Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069018.t1 | XP_003623338.1 | 89.8 | 589 | 56 | 2 | 1 | 589 | 1 | 585 | 3.10E-287 | 997.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069018.t1 | Q5NE24 | 26.4 | 311 | 202 | 10 | 286 | 587 | 207 | 499 | 1.1e-14 | 83.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069018.t1 | G7KSD5 | 89.8 | 589 | 56 | 2 | 1 | 589 | 1 | 585 | 2.2e-287 | 997.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene069018.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069018.t1 | MTR_7g069740 | 92.530 | 589 | 40 | 2 | 1 | 589 | 1 | 585 | 0.0 | 1099 |
| MS.gene069018.t1 | MTR_3g072710 | 25.679 | 405 | 246 | 15 | 218 | 587 | 115 | 499 | 3.67e-17 | 85.1 |
| MS.gene069018.t1 | MTR_7g027190 | 25.459 | 436 | 238 | 20 | 202 | 588 | 276 | 673 | 7.69e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069018.t1 | AT1G07520 | 22.166 | 397 | 265 | 13 | 218 | 587 | 313 | 692 | 8.21e-11 | 65.5 |
| MS.gene069018.t1 | AT1G07520 | 22.166 | 397 | 265 | 13 | 218 | 587 | 314 | 693 | 8.22e-11 | 65.5 |
Find 96 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCATGAATATTACCAATT+TGG | 0.125992 | 7.2:+33827537 | None:intergenic |
| ACCAATTTGGGGACTCAAAA+TGG | 0.187480 | 7.2:+33827550 | None:intergenic |
| CACATAATTGATTATTGTTT+TGG | 0.189427 | 7.2:-33826954 | MS.gene069018:CDS |
| TGAAATTGACATCAATTAAA+TGG | 0.209268 | 7.2:-33826875 | MS.gene069018:CDS |
| TTTCTTCATCAATTGGAAAT+TGG | 0.210829 | 7.2:+33827615 | None:intergenic |
| GGTGCATTATAAAGCCTTAT+TGG | 0.222002 | 7.2:-33826487 | MS.gene069018:CDS |
| TTCATGAATATTACCAATTT+GGG | 0.226150 | 7.2:+33827538 | None:intergenic |
| TACTTTGCCACAAGAAAATA+TGG | 0.244532 | 7.2:-33827303 | MS.gene069018:CDS |
| ACCTTGATAAAATACCTTAA+AGG | 0.261691 | 7.2:+33827058 | None:intergenic |
| AACTCCCTTCACTTTCTTCT+TGG | 0.266056 | 7.2:+33827504 | None:intergenic |
| CATTAGAGATGGAAGTTCTA+AGG | 0.276688 | 7.2:+33827592 | None:intergenic |
| ATCAAGGGAATTGTTACTTT+TGG | 0.291438 | 7.2:-33826576 | MS.gene069018:CDS |
| CTTGTATATCTTCTCTTGAT+TGG | 0.318337 | 7.2:-33826392 | MS.gene069018:CDS |
| ATACTCATATAGTTCCCTTT+TGG | 0.329361 | 7.2:+33826812 | None:intergenic |
| GATATGATCATTGGTGAATA+TGG | 0.332452 | 7.2:+33827637 | None:intergenic |
| TCTATGTGCTCATAGATTAA+TGG | 0.334847 | 7.2:+33827884 | None:intergenic |
| TCTAAGGTTTCTTCATCAAT+TGG | 0.336948 | 7.2:+33827608 | None:intergenic |
| CTTAGAACTTCCATCTCTAA+TGG | 0.346666 | 7.2:-33827591 | MS.gene069018:CDS |
| ATGAAAATTCTGAACGTGTT+TGG | 0.348685 | 7.2:-33826848 | MS.gene069018:CDS |
| AGACTCAATTGATTCCAATA+AGG | 0.348741 | 7.2:+33826473 | None:intergenic |
| AATGATAGGTCTTCCACATA+TGG | 0.349065 | 7.2:-33826673 | MS.gene069018:CDS |
| CCTCGGAGATGGTTGTAAAA+TGG | 0.359258 | 7.2:-33827432 | MS.gene069018:CDS |
| TCTTGTATGCCTCGCCTTTG+AGG | 0.374060 | 7.2:+33827093 | None:intergenic |
| TTGGCTTTCAATTTAATGAT+AGG | 0.377944 | 7.2:-33826687 | MS.gene069018:CDS |
| AGTGAGTCTTCCACACTTGA+TGG | 0.390562 | 7.2:-33827267 | MS.gene069018:CDS |
| CTCTTGATTGGTTACAAACA+TGG | 0.411194 | 7.2:-33826380 | MS.gene069018:CDS |
| AAAGGTGAGATTAGCTTAGA+AGG | 0.414505 | 7.2:-33826327 | MS.gene069018:CDS |
| ACTCATGTGGTTTGAAATTG+AGG | 0.416697 | 7.2:-33826785 | MS.gene069018:CDS |
| GAAATTGAGGGTAGAGGAAA+AGG | 0.420118 | 7.2:-33826772 | MS.gene069018:CDS |
| TCTGATTTCATTGAAAGTGT+TGG | 0.420317 | 7.2:+33827350 | None:intergenic |
| TCATATCATGCTAGAATTGA+AGG | 0.431395 | 7.2:-33826243 | MS.gene069018:CDS |
| ATGGATCATAGTTATCAATA+TGG | 0.431421 | 7.2:+33827795 | None:intergenic |
| TCAACCATGGTGAAGCTATA+CGG | 0.433516 | 7.2:+33827818 | None:intergenic |
| GAAACAGTCTCCAATAGAAA+AGG | 0.449571 | 7.2:+33826915 | None:intergenic |
| TGGAAATTGGATATGATCAT+TGG | 0.449728 | 7.2:+33827628 | None:intergenic |
| GAGGATTTGATCAAGAACTA+TGG | 0.452539 | 7.2:-33826600 | MS.gene069018:CDS |
| GATCAAGAACTATGGTATCA+AGG | 0.453234 | 7.2:-33826592 | MS.gene069018:CDS |
| TGTTGGACTCCGTGCATCAC+AGG | 0.453760 | 7.2:+33827367 | None:intergenic |
| AGTGATGGCTATCATCATAA+AGG | 0.457503 | 7.2:-33826345 | MS.gene069018:CDS |
| GTCTCAAGAGAGTCACCAAT+TGG | 0.467270 | 7.2:+33827161 | None:intergenic |
| GAGGGTAGAGGAAAAGGAGT+TGG | 0.469574 | 7.2:-33826766 | MS.gene069018:CDS |
| TCATCCATGATGAGACCATA+TGG | 0.470839 | 7.2:+33827776 | None:intergenic |
| CTATACCCTTCGAGGTTATG+TGG | 0.478048 | 7.2:+33827464 | None:intergenic |
| TGCATGTGAAGTGTTGTTTG+TGG | 0.478913 | 7.2:-33826418 | MS.gene069018:CDS |
| ATGATAGGTCTTCCACATAT+GGG | 0.481369 | 7.2:-33826672 | MS.gene069018:CDS |
| ATTGATAACTATGATCCATA+TGG | 0.484071 | 7.2:-33827791 | MS.gene069018:CDS |
| GCTCAAGAAGTGACAAATCA+TGG | 0.497130 | 7.2:-33827122 | MS.gene069018:CDS |
| CTTCTAACCATTCCCATATG+TGG | 0.507260 | 7.2:+33826660 | None:intergenic |
| TCATCCATGATGATGCCATA+TGG | 0.508726 | 7.2:+33827731 | None:intergenic |
| AAATGAGAATCAACTTGTGT+TGG | 0.511243 | 7.2:-33826217 | MS.gene069018:CDS |
| TGCTCATAGATTAATGGCCA+TGG | 0.515236 | 7.2:+33827890 | None:intergenic |
| CATGGTGAAGCCTTGGAGAA+AGG | 0.516575 | 7.2:-33827239 | MS.gene069018:CDS |
| GATTTGAACTATACCCTTCG+AGG | 0.518294 | 7.2:+33827456 | None:intergenic |
| GGAAGCACATGGTGAAGCCT+TGG | 0.523810 | 7.2:-33827246 | MS.gene069018:CDS |
| TGGTTTGAAATTGAGGGTAG+AGG | 0.527276 | 7.2:-33826778 | MS.gene069018:CDS |
| CTCATGTGGTTTGAAATTGA+GGG | 0.529548 | 7.2:-33826784 | MS.gene069018:CDS |
| GGTGAGATTAGCTTAGAAGG+TGG | 0.534203 | 7.2:-33826324 | MS.gene069018:CDS |
| TAAAGGGAAATGATCATAAG+TGG | 0.536816 | 7.2:+33827400 | None:intergenic |
| TATTTCATCAATTCTTGAAG+CGG | 0.538453 | 7.2:-33827003 | MS.gene069018:CDS |
| ATCAAGAACTATGGTATCAA+GGG | 0.539287 | 7.2:-33826591 | MS.gene069018:CDS |
| AGAATCAACTTGTGTTGGAA+TGG | 0.540696 | 7.2:-33826212 | MS.gene069018:CDS |
| AGTTCAAATCCCCTCGGAGA+TGG | 0.542639 | 7.2:-33827443 | MS.gene069018:CDS |
| GGTGATGACTATGTTCCATA+TGG | 0.543086 | 7.2:-33827746 | MS.gene069018:CDS |
| GAAGTCAGAGAAATGTTGAA+AGG | 0.546931 | 7.2:-33826276 | MS.gene069018:CDS |
| GAATCTAATTCCATTAGAGA+TGG | 0.557271 | 7.2:+33827581 | None:intergenic |
| GAAATGATCATAAGTGGCAC+TGG | 0.557550 | 7.2:+33827406 | None:intergenic |
| CAACTTGTGTTGGAATGGAA+AGG | 0.560463 | 7.2:-33826207 | MS.gene069018:CDS |
| TGTTCCATATGGCATCATCA+TGG | 0.566239 | 7.2:-33827735 | MS.gene069018:CDS |
| AAGAGATTCTTCACTCTCCA+TGG | 0.566385 | 7.2:-33827907 | MS.gene069018:CDS |
| TCTTGATTGGTTACAAACAT+GGG | 0.569487 | 7.2:-33826379 | MS.gene069018:CDS |
| TGATGATGATCAAAGGTTGA+TGG | 0.571392 | 7.2:+33827860 | None:intergenic |
| TGATCCATATGGTCTCATCA+TGG | 0.574218 | 7.2:-33827780 | MS.gene069018:CDS |
| GATGATGATCAAAGGTTGAT+GGG | 0.579359 | 7.2:+33827861 | None:intergenic |
| TCAAGTGTGGAAGACTCACT+TGG | 0.579458 | 7.2:+33827270 | None:intergenic |
| CAATCAAGAGAAGATATACA+AGG | 0.583066 | 7.2:+33826393 | None:intergenic |
| AGGTCTTCCACATATGGGAA+TGG | 0.588806 | 7.2:-33826667 | MS.gene069018:CDS |
| TATTACCAAGAAGAAAGTGA+AGG | 0.596617 | 7.2:-33827509 | MS.gene069018:CDS |
| AAAATTCTCCCTGTGATGCA+CGG | 0.606340 | 7.2:-33827376 | MS.gene069018:CDS |
| GTTGGACTCCGTGCATCACA+GGG | 0.606783 | 7.2:+33827368 | None:intergenic |
| TGGGAAGAGATGAAAAGTGA+TGG | 0.608114 | 7.2:-33826360 | MS.gene069018:CDS |
| CCATGTGCTTCCATCAAGTG+TGG | 0.618160 | 7.2:+33827257 | None:intergenic |
| ATTACCAAGAAGAAAGTGAA+GGG | 0.618537 | 7.2:-33827508 | MS.gene069018:CDS |
| TCATGAATATTACCAATTTG+GGG | 0.620776 | 7.2:+33827539 | None:intergenic |
| ATGTTGATGATGATGATCAA+AGG | 0.629471 | 7.2:+33827853 | None:intergenic |
| ATGATCATAAGTGGCACTGG+CGG | 0.631598 | 7.2:+33827409 | None:intergenic |
| TATGAGTATGCTAACTCATG+TGG | 0.632716 | 7.2:-33826798 | MS.gene069018:CDS |
| AAAATAATGAACGAAACCTG+TGG | 0.638753 | 7.2:-33826723 | MS.gene069018:CDS |
| GTTATCAATATGGTCAACCA+TGG | 0.646189 | 7.2:+33827805 | None:intergenic |
| GGGTATAGTTCAAATCCCCT+CGG | 0.648026 | 7.2:-33827449 | MS.gene069018:CDS |
| CTCATCATGGATGATCATGT+TGG | 0.654247 | 7.2:-33827767 | MS.gene069018:CDS |
| CCACACTTGATGGAAGCACA+TGG | 0.654957 | 7.2:-33827257 | MS.gene069018:CDS |
| ATTCATAATCATATTCAACA+TGG | 0.661377 | 7.2:+33827708 | None:intergenic |
| AATCATGGAGAATACCTCAA+AGG | 0.661739 | 7.2:-33827107 | MS.gene069018:CDS |
| AAGAGAGTCACCAATTGGAG+TGG | 0.663623 | 7.2:+33827166 | None:intergenic |
| TGGAGAATACCTCAAAGGCG+AGG | 0.686092 | 7.2:-33827102 | MS.gene069018:CDS |
| TGAGCCGTATAGCTTCACCA+TGG | 0.723365 | 7.2:-33827822 | MS.gene069018:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATAATCATATTCAACA+TGG | + | chr7.2:33826382-33826401 | None:intergenic | 20.0% |
| !! | TGAAATTGACATCAATTAAA+TGG | - | chr7.2:33827212-33827231 | MS.gene069018:CDS | 20.0% |
| !! | TTCATGAATATTACCAATTT+GGG | + | chr7.2:33826552-33826571 | None:intergenic | 20.0% |
| !!! | AATTTCAAGTCATTTTTTGA+AGG | - | chr7.2:33827571-33827590 | MS.gene069018:CDS | 20.0% |
| !!! | ATTGATTATTGTTTTGGAAA+TGG | - | chr7.2:33827139-33827158 | MS.gene069018:CDS | 20.0% |
| !!! | ATTTCAAGTCATTTTTTGAA+GGG | - | chr7.2:33827572-33827591 | MS.gene069018:CDS | 20.0% |
| !!! | CACATAATTGATTATTGTTT+TGG | - | chr7.2:33827133-33827152 | MS.gene069018:CDS | 20.0% |
| ! | ACCTTGATAAAATACCTTAA+AGG | + | chr7.2:33827032-33827051 | None:intergenic | 25.0% |
| ! | ATGGATCATAGTTATCAATA+TGG | + | chr7.2:33826295-33826314 | None:intergenic | 25.0% |
| ! | GTTCATGAATATTACCAATT+TGG | + | chr7.2:33826553-33826572 | None:intergenic | 25.0% |
| ! | TATTTCATCAATTCTTGAAG+CGG | - | chr7.2:33827084-33827103 | MS.gene069018:CDS | 25.0% |
| ! | TCATGAATATTACCAATTTG+GGG | + | chr7.2:33826551-33826570 | None:intergenic | 25.0% |
| ! | TTTCTTCATCAATTGGAAAT+TGG | + | chr7.2:33826475-33826494 | None:intergenic | 25.0% |
| !! | AAATGCTTATGAGTTTTTGA+AGG | - | chr7.2:33827459-33827478 | MS.gene069018:CDS | 25.0% |
| !! | AACTGTTGAGATTTTCTATT+TGG | - | chr7.2:33827908-33827927 | MS.gene069018:CDS | 25.0% |
| !! | ATTGATAACTATGATCCATA+TGG | - | chr7.2:33826296-33826315 | MS.gene069018:CDS | 25.0% |
| !! | GGTATTTTATCAAGGTAATT+TGG | - | chr7.2:33827036-33827055 | MS.gene069018:CDS | 25.0% |
| !! | TATGTGGAAAATTTTGTGAA+GGG | + | chr7.2:33826610-33826629 | None:intergenic | 25.0% |
| !! | TCAATTTCCATATTTTCTTG+TGG | + | chr7.2:33826794-33826813 | None:intergenic | 25.0% |
| !! | TTATGTGGAAAATTTTGTGA+AGG | + | chr7.2:33826611-33826630 | None:intergenic | 25.0% |
| !! | TTGGCTTTCAATTTAATGAT+AGG | - | chr7.2:33827400-33827419 | MS.gene069018:CDS | 25.0% |
| !! | TTTTATCAAGGTAATTTGGT+TGG | - | chr7.2:33827040-33827059 | MS.gene069018:CDS | 25.0% |
| !!! | ATTGAGCAAAAATGTTTTGA+TGG | - | chr7.2:33827789-33827808 | MS.gene069018:CDS | 25.0% |
| AAAATAATGAACGAAACCTG+TGG | - | chr7.2:33827364-33827383 | MS.gene069018:CDS | 30.0% | |
| AAATGAGAATCAACTTGTGT+TGG | - | chr7.2:33827870-33827889 | MS.gene069018:CDS | 30.0% | |
| ATCAAGAACTATGGTATCAA+GGG | - | chr7.2:33827496-33827515 | MS.gene069018:CDS | 30.0% | |
| ATGAAAATTCTGAACGTGTT+TGG | - | chr7.2:33827239-33827258 | MS.gene069018:CDS | 30.0% | |
| ATTACCAAGAAGAAAGTGAA+GGG | - | chr7.2:33826579-33826598 | MS.gene069018:CDS | 30.0% | |
| CAATCAAGAGAAGATATACA+AGG | + | chr7.2:33827697-33827716 | None:intergenic | 30.0% | |
| CTTGTATATCTTCTCTTGAT+TGG | - | chr7.2:33827695-33827714 | MS.gene069018:CDS | 30.0% | |
| GAATCTAATTCCATTAGAGA+TGG | + | chr7.2:33826509-33826528 | None:intergenic | 30.0% | |
| GATATGATCATTGGTGAATA+TGG | + | chr7.2:33826453-33826472 | None:intergenic | 30.0% | |
| TAAAGGGAAATGATCATAAG+TGG | + | chr7.2:33826690-33826709 | None:intergenic | 30.0% | |
| TACTTTGCCACAAGAAAATA+TGG | - | chr7.2:33826784-33826803 | MS.gene069018:CDS | 30.0% | |
| TATTACCAAGAAGAAAGTGA+AGG | - | chr7.2:33826578-33826597 | MS.gene069018:CDS | 30.0% | |
| TCATATCATGCTAGAATTGA+AGG | - | chr7.2:33827844-33827863 | MS.gene069018:CDS | 30.0% | |
| TCTATGTGCTCATAGATTAA+TGG | + | chr7.2:33826206-33826225 | None:intergenic | 30.0% | |
| TGGAAATTGGATATGATCAT+TGG | + | chr7.2:33826462-33826481 | None:intergenic | 30.0% | |
| ! | AGACTCAATTGATTCCAATA+AGG | + | chr7.2:33827617-33827636 | None:intergenic | 30.0% |
| ! | ATACTCATATAGTTCCCTTT+TGG | + | chr7.2:33827278-33827297 | None:intergenic | 30.0% |
| ! | TCTAAGGTTTCTTCATCAAT+TGG | + | chr7.2:33826482-33826501 | None:intergenic | 30.0% |
| ! | TCTGATTTCATTGAAAGTGT+TGG | + | chr7.2:33826740-33826759 | None:intergenic | 30.0% |
| ! | TCTTGATTGGTTACAAACAT+GGG | - | chr7.2:33827708-33827727 | MS.gene069018:CDS | 30.0% |
| ! | TGAGACACTTGCATTTTATT+TGG | - | chr7.2:33826943-33826962 | MS.gene069018:CDS | 30.0% |
| !! | ATGTTGATGATGATGATCAA+AGG | + | chr7.2:33826237-33826256 | None:intergenic | 30.0% |
| !!! | ATCAAGGGAATTGTTACTTT+TGG | - | chr7.2:33827511-33827530 | MS.gene069018:CDS | 30.0% |
| !!! | GCCTTTAAGGTATTTTATCA+AGG | - | chr7.2:33827028-33827047 | MS.gene069018:CDS | 30.0% |
| !!! | GTCATTTTTTGAAGGGAATT+TGG | - | chr7.2:33827579-33827598 | MS.gene069018:CDS | 30.0% |
| AATCATGGAGAATACCTCAA+AGG | - | chr7.2:33826980-33826999 | MS.gene069018:CDS | 35.0% | |
| AATGATAGGTCTTCCACATA+TGG | - | chr7.2:33827414-33827433 | MS.gene069018:CDS | 35.0% | |
| AGAATCAACTTGTGTTGGAA+TGG | - | chr7.2:33827875-33827894 | MS.gene069018:CDS | 35.0% | |
| AGTGATGGCTATCATCATAA+AGG | - | chr7.2:33827742-33827761 | MS.gene069018:CDS | 35.0% | |
| ATGATAGGTCTTCCACATAT+GGG | - | chr7.2:33827415-33827434 | MS.gene069018:CDS | 35.0% | |
| CAAAAACTCTTTCTTTCCAC+AGG | + | chr7.2:33827383-33827402 | None:intergenic | 35.0% | |
| CAAAAAGTTACCACTCCAAT+TGG | - | chr7.2:33826911-33826930 | MS.gene069018:CDS | 35.0% | |
| CATTAGAGATGGAAGTTCTA+AGG | + | chr7.2:33826498-33826517 | None:intergenic | 35.0% | |
| CTTAGAACTTCCATCTCTAA+TGG | - | chr7.2:33826496-33826515 | MS.gene069018:CDS | 35.0% | |
| GAAACAGTCTCCAATAGAAA+AGG | + | chr7.2:33827175-33827194 | None:intergenic | 35.0% | |
| GAAGTCAGAGAAATGTTGAA+AGG | - | chr7.2:33827811-33827830 | MS.gene069018:CDS | 35.0% | |
| GAGGATTTGATCAAGAACTA+TGG | - | chr7.2:33827487-33827506 | MS.gene069018:CDS | 35.0% | |
| GATCAAGAACTATGGTATCA+AGG | - | chr7.2:33827495-33827514 | MS.gene069018:CDS | 35.0% | |
| GTTATCAATATGGTCAACCA+TGG | + | chr7.2:33826285-33826304 | None:intergenic | 35.0% | |
| TATGAGTATGCTAACTCATG+TGG | - | chr7.2:33827289-33827308 | MS.gene069018:CDS | 35.0% | |
| ! | AATTTTCCACATAACCTCGA+AGG | - | chr7.2:33826617-33826636 | MS.gene069018:CDS | 35.0% |
| ! | ACTCATGTGGTTTGAAATTG+AGG | - | chr7.2:33827302-33827321 | MS.gene069018:CDS | 35.0% |
| ! | ATTTTCCACATAACCTCGAA+GGG | - | chr7.2:33826618-33826637 | MS.gene069018:CDS | 35.0% |
| ! | CAATTGGAGTGGTAACTTTT+TGG | + | chr7.2:33826913-33826932 | None:intergenic | 35.0% |
| ! | CACAGGGAGAATTTTGTAAA+GGG | + | chr7.2:33826706-33826725 | None:intergenic | 35.0% |
| ! | CTCATGTGGTTTGAAATTGA+GGG | - | chr7.2:33827303-33827322 | MS.gene069018:CDS | 35.0% |
| ! | CTCTTGATTGGTTACAAACA+TGG | - | chr7.2:33827707-33827726 | MS.gene069018:CDS | 35.0% |
| ! | CTGTGGAAAGAAAGAGTTTT+TGG | - | chr7.2:33827381-33827400 | MS.gene069018:CDS | 35.0% |
| ! | GATGATGATCAAAGGTTGAT+GGG | + | chr7.2:33826229-33826248 | None:intergenic | 35.0% |
| ! | GGTGCATTATAAAGCCTTAT+TGG | - | chr7.2:33827600-33827619 | MS.gene069018:CDS | 35.0% |
| ! | TCACAGGGAGAATTTTGTAA+AGG | + | chr7.2:33826707-33826726 | None:intergenic | 35.0% |
| ! | TGATGATGATCAAAGGTTGA+TGG | + | chr7.2:33826230-33826249 | None:intergenic | 35.0% |
| ! | TGTTCAATGGCCTTTTCTAT+TGG | - | chr7.2:33827162-33827181 | MS.gene069018:CDS | 35.0% |
| !! | AAAGGTGAGATTAGCTTAGA+AGG | - | chr7.2:33827760-33827779 | MS.gene069018:CDS | 35.0% |
| !! | GAATTTTGAGGATGCCAAAA+GGG | - | chr7.2:33827261-33827280 | MS.gene069018:CDS | 35.0% |
| !! | TGAACGTGTTTGGAATTTTG+AGG | - | chr7.2:33827249-33827268 | MS.gene069018:CDS | 35.0% |
| !!! | GGAATTGTTACTTTTGGTGA+TGG | - | chr7.2:33827517-33827536 | MS.gene069018:CDS | 35.0% |
| !!! | GTTTTGGAAATGGTGTTCAA+TGG | - | chr7.2:33827149-33827168 | MS.gene069018:CDS | 35.0% |
| AAAATTCTCCCTGTGATGCA+CGG | - | chr7.2:33826711-33826730 | MS.gene069018:CDS | 40.0% | |
| AACTCCCTTCACTTTCTTCT+TGG | + | chr7.2:33826586-33826605 | None:intergenic | 40.0% | |
| AAGAGATTCTTCACTCTCCA+TGG | - | chr7.2:33826180-33826199 | MS.gene069018:CDS | 40.0% | |
| ACCAATTTGGGGACTCAAAA+TGG | + | chr7.2:33826540-33826559 | None:intergenic | 40.0% | |
| CAACTTGTGTTGGAATGGAA+AGG | - | chr7.2:33827880-33827899 | MS.gene069018:CDS | 40.0% | |
| CTCATCATGGATGATCATGT+TGG | - | chr7.2:33826320-33826339 | MS.gene069018:CDS | 40.0% | |
| CTTCTAACCATTCCCATATG+TGG | + | chr7.2:33827430-33827449 | None:intergenic | 40.0% | |
| GAAATGATCATAAGTGGCAC+TGG | + | chr7.2:33826684-33826703 | None:intergenic | 40.0% | |
| GAAATTGAGGGTAGAGGAAA+AGG | - | chr7.2:33827315-33827334 | MS.gene069018:CDS | 40.0% | |
| GATTTGAACTATACCCTTCG+AGG | + | chr7.2:33826634-33826653 | None:intergenic | 40.0% | |
| GCTCAAGAAGTGACAAATCA+TGG | - | chr7.2:33826965-33826984 | MS.gene069018:CDS | 40.0% | |
| GGTGATGACTATGTTCCATA+TGG | - | chr7.2:33826341-33826360 | MS.gene069018:CDS | 40.0% | |
| TCAACCATGGTGAAGCTATA+CGG | + | chr7.2:33826272-33826291 | None:intergenic | 40.0% | |
| TCATCCATGATGAGACCATA+TGG | + | chr7.2:33826314-33826333 | None:intergenic | 40.0% | |
| TGATCCATATGGTCTCATCA+TGG | - | chr7.2:33826307-33826326 | MS.gene069018:CDS | 40.0% | |
| TGCTCATAGATTAATGGCCA+TGG | + | chr7.2:33826200-33826219 | None:intergenic | 40.0% | |
| TGGGAAGAGATGAAAAGTGA+TGG | - | chr7.2:33827727-33827746 | MS.gene069018:CDS | 40.0% | |
| TGTTCCATATGGCATCATCA+TGG | - | chr7.2:33826352-33826371 | MS.gene069018:CDS | 40.0% | |
| ! | ATTTTACAACCATCTCCGAG+GGG | + | chr7.2:33826656-33826675 | None:intergenic | 40.0% |
| ! | CATTTTACAACCATCTCCGA+GGG | + | chr7.2:33826657-33826676 | None:intergenic | 40.0% |
| ! | CGAGGCATACAAGAATTTTC+AGG | - | chr7.2:33827003-33827022 | MS.gene069018:CDS | 40.0% |
| ! | TCATCCATGATGATGCCATA+TGG | + | chr7.2:33826359-33826378 | None:intergenic | 40.0% |
| ! | TGGTTTGAAATTGAGGGTAG+AGG | - | chr7.2:33827309-33827328 | MS.gene069018:CDS | 40.0% |
| !! | GAATTTTCAGGCTGCCTTTA+AGG | - | chr7.2:33827015-33827034 | MS.gene069018:CDS | 40.0% |
| !! | GGAATTTTGAGGATGCCAAA+AGG | - | chr7.2:33827260-33827279 | MS.gene069018:CDS | 40.0% |
| !! | TCCATTTTGAGTCCCCAAAT+TGG | - | chr7.2:33826536-33826555 | MS.gene069018:CDS | 40.0% |
| !! | TGAGTTTTTGAAGGTAGCAG+AGG | - | chr7.2:33827468-33827487 | MS.gene069018:CDS | 40.0% |
| !! | TGCATGTGAAGTGTTGTTTG+TGG | - | chr7.2:33827669-33827688 | MS.gene069018:CDS | 40.0% |
| !! | TGCTTTTTGTCCTTTCTCCA+AGG | + | chr7.2:33826861-33826880 | None:intergenic | 40.0% |
| AAGAGAGTCACCAATTGGAG+TGG | + | chr7.2:33826924-33826943 | None:intergenic | 45.0% | |
| AGGTCTTCCACATATGGGAA+TGG | - | chr7.2:33827420-33827439 | MS.gene069018:CDS | 45.0% | |
| AGTGAGTCTTCCACACTTGA+TGG | - | chr7.2:33826820-33826839 | MS.gene069018:CDS | 45.0% | |
| CCTCGGAGATGGTTGTAAAA+TGG | - | chr7.2:33826655-33826674 | MS.gene069018:CDS | 45.0% | |
| CTATACCCTTCGAGGTTATG+TGG | + | chr7.2:33826626-33826645 | None:intergenic | 45.0% | |
| GGGTATAGTTCAAATCCCCT+CGG | - | chr7.2:33826638-33826657 | MS.gene069018:CDS | 45.0% | |
| GTCTCAAGAGAGTCACCAAT+TGG | + | chr7.2:33826929-33826948 | None:intergenic | 45.0% | |
| TCAAGTGTGGAAGACTCACT+TGG | + | chr7.2:33826820-33826839 | None:intergenic | 45.0% | |
| ! | ATGATCATAAGTGGCACTGG+CGG | + | chr7.2:33826681-33826700 | None:intergenic | 45.0% |
| ! | CCATTTTACAACCATCTCCG+AGG | + | chr7.2:33826658-33826677 | None:intergenic | 45.0% |
| !! | GGTGAGATTAGCTTAGAAGG+TGG | - | chr7.2:33827763-33827782 | MS.gene069018:CDS | 45.0% |
| AGTTCAAATCCCCTCGGAGA+TGG | - | chr7.2:33826644-33826663 | MS.gene069018:CDS | 50.0% | |
| CATGGTGAAGCCTTGGAGAA+AGG | - | chr7.2:33826848-33826867 | MS.gene069018:CDS | 50.0% | |
| CCATGTGCTTCCATCAAGTG+TGG | + | chr7.2:33826833-33826852 | None:intergenic | 50.0% | |
| GAGGGTAGAGGAAAAGGAGT+TGG | - | chr7.2:33827321-33827340 | MS.gene069018:CDS | 50.0% | |
| TCTTGTATGCCTCGCCTTTG+AGG | + | chr7.2:33826997-33827016 | None:intergenic | 50.0% | |
| TGAGCCGTATAGCTTCACCA+TGG | - | chr7.2:33826265-33826284 | MS.gene069018:CDS | 50.0% | |
| TGGAGAATACCTCAAAGGCG+AGG | - | chr7.2:33826985-33827004 | MS.gene069018:CDS | 50.0% | |
| ! | CCACACTTGATGGAAGCACA+TGG | - | chr7.2:33826830-33826849 | MS.gene069018:CDS | 50.0% |
| GTTGGACTCCGTGCATCACA+GGG | + | chr7.2:33826722-33826741 | None:intergenic | 55.0% | |
| TGTTGGACTCCGTGCATCAC+AGG | + | chr7.2:33826723-33826742 | None:intergenic | 55.0% | |
| ! | GGAAGCACATGGTGAAGCCT+TGG | - | chr7.2:33826841-33826860 | MS.gene069018:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 33826170 | 33827939 | 33826170 | ID=MS.gene069018 |
| chr7.2 | mRNA | 33826170 | 33827939 | 33826170 | ID=MS.gene069018.t1;Parent=MS.gene069018 |
| chr7.2 | exon | 33826170 | 33827939 | 33826170 | ID=MS.gene069018.t1.exon1;Parent=MS.gene069018.t1 |
| chr7.2 | CDS | 33826170 | 33827939 | 33826170 | ID=cds.MS.gene069018.t1;Parent=MS.gene069018.t1 |
| Gene Sequence |
| Protein sequence |
