AlfalfaGEDB | MS.gene069022

M. sativa cultivar XinJiangDaYe / MS.gene069022

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069022.t1	XP_003623331.2	92.4	354	21	2	1	350	1	352	1.40E-170	609

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069022.t1	Q700D9	69.7	66	20	0	59	124	15	80	3.5e-21	104.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069022.t1	G7KSC8	92.4	354	21	2	1	350	1	352	1.0e-170	609.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene069022.t1	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069022.t1	MTR_7g069660	92.938	354	19	2	1	350	1	352	0.0	642
MS.gene069022.t1	MTR_2g084230	62.069	116	40	2	18	132	50	162	1.82e-37	137
MS.gene069022.t1	MTR_8g086410	57.983	119	43	2	21	132	56	174	3.89e-37	138
MS.gene069022.t1	MTR_8g086410	57.983	119	43	2	21	132	58	176	3.90e-37	138
MS.gene069022.t1	MTR_2g084230	62.069	116	40	2	18	132	50	162	4.01e-37	137
MS.gene069022.t1	MTR_2g023580	81.159	69	13	0	55	123	43	111	6.34e-35	128
MS.gene069022.t1	MTR_8g086410	54.762	126	43	3	21	132	58	183	1.68e-34	131
MS.gene069022.t1	MTR_2g016220	71.084	83	24	0	50	132	72	154	1.03e-33	128
MS.gene069022.t1	MTR_2g016220	71.084	83	24	0	50	132	72	154	1.06e-33	128
MS.gene069022.t1	MTR_2g016220	67.816	87	24	1	50	132	72	158	1.26e-31	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069022.t1	AT2G38300	42.025	326	153	14	44	350	32	340	1.55e-57	190
MS.gene069022.t1	AT2G40260	63.889	108	37	1	50	157	65	170	4.11e-39	143
MS.gene069022.t1	AT2G42660	78.788	66	14	0	59	124	42	107	2.00e-31	119
MS.gene069022.t1	AT2G02060	65.432	81	28	0	40	120	2	82	1.56e-29	114
MS.gene069022.t1	AT2G02060	65.432	81	28	0	40	120	2	82	1.56e-29	114
MS.gene069022.t1	AT4G04605	59.302	86	33	1	55	138	2	87	1.61e-28	110
MS.gene069022.t1	AT1G14600	68.657	67	21	0	59	125	15	81	1.97e-28	111
MS.gene069022.t1	AT4G04580	58.209	67	28	0	57	123	4	70	3.75e-23	94.7
MS.gene069022.t1	AT5G42630	67.213	61	20	0	66	126	104	164	2.09e-22	95.5
MS.gene069022.t1	AT5G42630	67.213	61	20	0	66	126	104	164	2.15e-22	94.4

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Find 59 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAGTTGACACAAATCA+AGG	0.545661	7.2:+33870558	MS.gene069022:CDS
AAATTAAATTCAAGGAGCAA+TGG	0.605129	7.2:+33871649	MS.gene069022:CDS
AATAGCAACATCAATATCCA+GGG	0.624382	7.2:+33871385	MS.gene069022:CDS
AATCATCTTATGTTAGCAAA+AGG	0.454129	7.2:+33871734	MS.gene069022:CDS
AATGAGAGGAAATTATCATT+TGG	0.404536	7.2:-33871472	None:intergenic
ACCCAACTTCCCATGCTTCA+AGG	0.422458	7.2:+33870747	MS.gene069022:CDS
AGAAAACGAAAATGAAGATC+AGG	0.462194	7.2:-33870015	None:intergenic
AGAAGAACAAGATGGTTCTA+AGG	0.407367	7.2:+33871762	MS.gene069022:CDS
AGCCTTGAAGCATGGGAAGT+TGG	0.470813	7.2:-33870749	None:intergenic
AGGATTAAAGAAGAACAAGA+TGG	0.602292	7.2:+33871754	MS.gene069022:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCTAGCTAGCTATATAT+AGG	-	chr7.2:33870457-33870476	None:intergenic	30.0%
AAAGTAGTTGACACAAATCA+AGG	+	chr7.2:33870558-33870577	MS.gene069022:CDS	30.0%
AATAGCAACATCAATATCCA+GGG	+	chr7.2:33871385-33871404	MS.gene069022:CDS	30.0%
ACACAAATCAAGGTACAATA+AGG	+	chr7.2:33870568-33870587	MS.gene069022:intron	30.0%
AGAAAACGAAAATGAAGATC+AGG	-	chr7.2:33870018-33870037	None:intergenic	30.0%
AGGATTAAAGAAGAACAAGA+TGG	+	chr7.2:33871754-33871773	MS.gene069022:CDS	30.0%
ATCTATGTGTTTGATCATCA+TGG	-	chr7.2:33870166-33870185	None:intergenic	30.0%
ATTAATTGAAACACTTGCCT+TGG	-	chr7.2:33869839-33869858	None:intergenic	30.0%
ATTCTTATCGAAAAACGAGA+AGG	-	chr7.2:33871009-33871028	None:intergenic	30.0%
CAAATCAAACATCATCGTAT+AGG	+	chr7.2:33870778-33870797	MS.gene069022:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	33869796	33871828	33869796	ID=MS.gene069022
chr7.2	mRNA	33869796	33871828	33869796	ID=MS.gene069022.t1;Parent=MS.gene069022
chr7.2	exon	33869796	33870069	33869796	ID=MS.gene069022.t1.exon1;Parent=MS.gene069022.t1
chr7.2	CDS	33869796	33870069	33869796	ID=cds.MS.gene069022.t1;Parent=MS.gene069022.t1
chr7.2	exon	33870347	33870423	33870347	ID=MS.gene069022.t1.exon2;Parent=MS.gene069022.t1
chr7.2	CDS	33870347	33870423	33870347	ID=cds.MS.gene069022.t1;Parent=MS.gene069022.t1
chr7.2	exon	33870543	33870579	33870543	ID=MS.gene069022.t1.exon3;Parent=MS.gene069022.t1
chr7.2	CDS	33870543	33870579	33870543	ID=cds.MS.gene069022.t1;Parent=MS.gene069022.t1
chr7.2	exon	33870691	33870799	33870691	ID=MS.gene069022.t1.exon4;Parent=MS.gene069022.t1
chr7.2	CDS	33870691	33870799	33870691	ID=cds.MS.gene069022.t1;Parent=MS.gene069022.t1
chr7.2	exon	33871273	33871828	33871273	ID=MS.gene069022.t1.exon5;Parent=MS.gene069022.t1
chr7.2	CDS	33871273	33871828	33871273	ID=cds.MS.gene069022.t1;Parent=MS.gene069022.t1

Gene Sequence

>MS.gene069022

ATGAATATGAGAGAGGAAGAAACATATGGATCAGAATGTTCCAAGGCAAGTGTTTCAATTAATGAAGATGATTGTGAAATTAGTGAAGGAAATGAAGATGTGCAAAAGAACAACAATGGAGGAATAAGCTCAAGCAATAGTACTATAGAAGAGAATTGTGAGAAGAAACCATCAGTGAGGCCTTATGTTAGATCCAAGTTGCCTAGGCTACGTTGGACTCCTGATCTTCATTTTCGTTTTCTTCATGCTGTGCAAAGACTTGGTGGGCAAGAGAGTAAGTTCCACACACATAACATATATGTATATTTTTCTTATAATTATTAGCTAAGAATTGAAAAGTAACCTAGAATTTACAACATGGTGTGGACCATGATGATCAAACACATAGATATAGCTTCTTTTTGCCTTTTCTAGATTTCAATTTTTCATAGGGGATTTCAATATCAAGTTAGTCCTAAGGTAGGTTAATCAATTCAACAATATGATTATTCTTGTTATTTTAATTTTAATTTTAATTTTGTATGTATTGTTAATGATTTTCTTGTGTGTAGGAGCAACTCCAAAATTGGTTCTTCAATTGATGAATATAAAAGGTTTAAGTATTGCTCATGTGAAGAGTCATTTACAGGTAAAAAGTCATAGATAAATATGGTTGCAACCTATATATAGCTAGCTAGCTTTCAATATTTCTTAAGATTTATAATTGTTTAATTAATTTCTTTTCTTTCACATATATTTCTTTTCCAGATGTATAGAAGCAAGAAAGTAGTTGACACAAATCAAGGTACAATAAGGTTTTTCTTTTTTGTATGAATTCAACTATCAATAAGTGATTACATAATTAGGGTTTGTGCTTGCAAGTCACTAATTATTTATGATTGTATATATGTAACAGTGTTGGCTGATCATAGGCTTCTTGTAGACAATGGAGACAGAAATGTTTATAATCTCACCCAACTTCCCATGCTTCAAGGCTATACTCCAAATCAAACATCATCGTATAGGTATACATATACTACTTGAATTAACCTTTTTTTTTTTTTATGGAGAATGCTAACTAGTGCCCCAAGGGCATGCATTGGTTAAGCATCTAATCAAAAGTAACATCTTATATTTCAAAGACAAAAATTCTATTTGTAGAATCTTTAACCATTACCCTTGAGGGCACCGGTTAAGAAGACCTTTTTTTATTCATAGGGATCATATAAACCCTTCTCGTTTTTCGATAAGAATAAAGTTATCAAAACAAGTACAAAGGGTACTAAAATCGAGTTACCGAACTTGACCAAAAAATAAAATTAAAAAAATCGAGTTACACAAGAACAAAATACGAGTTGCTAACCAACTTTGTTCCAAATTTCCTTAAGTCATTTACGTTTAAAATTGTAACCTCAAGGTTTAAACTTCAAATCCTCCAACGACAGTTGTAAAATTACTGTTATTGTCTTAGAATTGAAGGTTTTTTTTTTTTTTACAGATGTGGATCATATGGGGATGCTTCTCTTGCCATGTATGAAAACATGGTACAAATGAGTTCAATAAGTGAATCTAGAGCTGAGTTCTATGGCAAAATGATTGAGAGAGCCAATAATAGCAACATCAATATCCAGGGTCATAGTATTTTCCAAATGGATTCATCCAATTTTAGAGAACTATCAACAACTAAAGTCCATGAACCAAATGATAATTTCCTCTCATTTTGTGGCCATGAATCTTTAAGAGATGATCTACAAGTTCAGCCAAGAGCACAAGATCTCATTTCGAACGATAACTTGCCTGAAAATCAAGAGGAAGAACTGAAGACAATGAAAAGAAAAGCTTCAAATATGGATCTTGAGTTGGATCTATCACTAAAATTAAATTCAAGGAGCAATGGTGATCATAAATGTATAGAGGAGCATGAAATTGATAGCAATTTATCACTCTCTTTGTATTCTCAATCATCTTATGTTAGCAAAAGGATTAAAGAAGAACAAGATGGTTCTAAGGAGCAAGAGAAAGGAGTCAATATTTCTTTGGATCTAACCATATGA

Protein sequence

>MS.gene069022.t1

MNMREEETYGSECSKASVSINEDDCEISEGNEDVQKNNNGGISSSNSTIEENCEKKPSVRPYVRSKLPRLRWTPDLHFRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVVDTNQVLADHRLLVDNGDRNVYNLTQLPMLQGYTPNQTSSYRCGSYGDASLAMYENMVQMSSISESRAEFYGKMIERANNSNINIQGHSIFQMDSSNFRELSTTKVHEPNDNFLSFCGHESLRDDLQVQPRAQDLISNDNLPENQEEELKTMKRKASNMDLELDLSLKLNSRSNGDHKCIEEHEIDSNLSLSLYSQSSYVSKRIKEEQDGSKEQEKGVNISLDLTI