AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069022

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069022.t1 MTR_7g069660 92.938 354 19 2 1 350 1 352 0.0 642
MS.gene069022.t1 MTR_2g084230 62.069 116 40 2 18 132 50 162 1.82e-37 137
MS.gene069022.t1 MTR_8g086410 57.983 119 43 2 21 132 56 174 3.89e-37 138
MS.gene069022.t1 MTR_8g086410 57.983 119 43 2 21 132 58 176 3.90e-37 138
MS.gene069022.t1 MTR_2g084230 62.069 116 40 2 18 132 50 162 4.01e-37 137
MS.gene069022.t1 MTR_2g023580 81.159 69 13 0 55 123 43 111 6.34e-35 128
MS.gene069022.t1 MTR_8g086410 54.762 126 43 3 21 132 58 183 1.68e-34 131
MS.gene069022.t1 MTR_2g016220 71.084 83 24 0 50 132 72 154 1.03e-33 128
MS.gene069022.t1 MTR_2g016220 71.084 83 24 0 50 132 72 154 1.06e-33 128
MS.gene069022.t1 MTR_2g016220 67.816 87 24 1 50 132 72 158 1.26e-31 122
MS.gene069022.t1 MTR_1g112370 72.727 66 18 0 58 123 13 78 2.06e-28 113
MS.gene069022.t1 MTR_0223s0040 65.278 72 25 0 52 123 3 74 4.69e-28 111
MS.gene069022.t1 MTR_6g071625 55.294 85 31 1 66 150 201 278 4.20e-23 99.0
MS.gene069022.t1 MTR_8g066310 44.144 111 58 1 35 141 137 247 1.73e-22 97.1
MS.gene069022.t1 MTR_1g021520 59.211 76 29 1 66 141 125 198 2.53e-22 95.9
MS.gene069022.t1 MTR_5g029470 56.098 82 35 1 61 141 212 293 6.48e-22 96.3
MS.gene069022.t1 MTR_3g450310 42.105 114 56 3 49 162 1 104 9.06e-22 92.4
MS.gene069022.t1 MTR_3g064840 64.179 67 23 1 61 126 267 333 2.82e-21 94.7
MS.gene069022.t1 MTR_7g098250 64.286 56 20 0 68 123 263 318 7.18e-19 87.8
MS.gene069022.t1 MTR_7g115530 62.500 56 21 0 68 123 219 274 1.11e-18 85.5
MS.gene069022.t1 MTR_7g093030 49.367 79 39 1 63 140 208 286 2.00e-18 84.7
MS.gene069022.t1 MTR_1g080330 62.500 56 21 0 68 123 176 231 2.11e-18 84.7
MS.gene069022.t1 MTR_6g032990 66.038 53 18 0 68 120 43 95 2.13e-18 85.9
MS.gene069022.t1 MTR_7g115530 62.500 56 21 0 68 123 219 274 2.44e-18 85.1
MS.gene069022.t1 MTR_1g080330 62.500 56 21 0 68 123 176 231 2.62e-18 85.5
MS.gene069022.t1 MTR_7g115530 62.500 56 21 0 68 123 219 274 3.07e-18 85.9
MS.gene069022.t1 MTR_2g086450 62.500 56 21 0 68 123 46 101 3.15e-18 85.5
MS.gene069022.t1 MTR_5g027440 62.069 58 22 0 63 120 21 78 3.26e-18 84.0
MS.gene069022.t1 MTR_7g093030 49.367 79 39 1 63 140 208 286 5.04e-18 84.7
MS.gene069022.t1 MTR_7g115530 62.500 56 21 0 68 123 219 274 6.19e-18 84.3
MS.gene069022.t1 MTR_7g088070 55.224 67 30 0 59 125 42 108 1.50e-17 82.0
MS.gene069022.t1 MTR_7g088070 55.224 67 30 0 59 125 42 108 1.61e-17 82.0
MS.gene069022.t1 MTR_1g090670 60.714 56 22 0 68 123 45 100 7.50e-17 80.1
MS.gene069022.t1 MTR_2g027800 60.714 56 22 0 68 123 40 95 8.79e-17 80.5
MS.gene069022.t1 MTR_7g115530 63.462 52 19 0 68 119 219 270 1.14e-16 79.7
MS.gene069022.t1 MTR_7g115530 60.714 56 22 0 68 123 219 274 1.37e-16 79.3
MS.gene069022.t1 MTR_2g027800 62.264 53 20 0 68 120 40 92 1.38e-16 79.7
MS.gene069022.t1 MTR_5g041350 56.604 53 23 0 68 120 16 68 1.83e-16 79.7
MS.gene069022.t1 MTR_2g027860 61.404 57 22 0 69 125 51 107 2.40e-16 79.3
MS.gene069022.t1 MTR_1g053830 56.364 55 24 0 69 123 20 74 2.51e-16 73.9
MS.gene069022.t1 MTR_1g053835 52.055 73 34 1 69 140 260 332 3.03e-16 79.7
MS.gene069022.t1 MTR_6g444980 55.357 56 25 0 68 123 36 91 3.40e-15 76.3
MS.gene069022.t1 MTR_6g444980 55.357 56 25 0 68 123 36 91 4.03e-15 75.9
MS.gene069022.t1 MTR_4g081710 55.357 56 25 0 68 123 18 73 5.14e-15 75.5
MS.gene069022.t1 MTR_7g068600 56.667 60 23 1 69 125 15 74 4.44e-13 68.6
MS.gene069022.t1 MTR_4g021790 51.786 56 26 1 65 120 166 220 1.49e-12 67.4
MS.gene069022.t1 MTR_1g053800 54.717 53 24 0 69 121 179 231 1.89e-12 67.8
MS.gene069022.t1 MTR_4g086835 45.205 73 31 1 57 120 255 327 3.17e-12 67.8
MS.gene069022.t1 MTR_4g064730 48.684 76 37 2 46 120 109 183 9.49e-12 65.5
MS.gene069022.t1 MTR_4g113140 55.769 52 23 0 69 120 237 288 1.20e-11 65.9
MS.gene069022.t1 MTR_2g450070 39.316 117 57 6 66 178 212 318 1.21e-11 66.2
MS.gene069022.t1 MTR_2g450070 39.316 117 57 6 66 178 212 318 1.23e-11 66.2
MS.gene069022.t1 MTR_7g093010 49.231 65 33 0 69 133 215 279 2.41e-11 64.7
MS.gene069022.t1 MTR_4g086835 45.205 73 30 2 57 120 255 326 7.15e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069022.t1 AT2G38300 42.025 326 153 14 44 350 32 340 1.55e-57 190
MS.gene069022.t1 AT2G40260 63.889 108 37 1 50 157 65 170 4.11e-39 143
MS.gene069022.t1 AT2G42660 78.788 66 14 0 59 124 42 107 2.00e-31 119
MS.gene069022.t1 AT2G02060 65.432 81 28 0 40 120 2 82 1.56e-29 114
MS.gene069022.t1 AT2G02060 65.432 81 28 0 40 120 2 82 1.56e-29 114
MS.gene069022.t1 AT4G04605 59.302 86 33 1 55 138 2 87 1.61e-28 110
MS.gene069022.t1 AT1G14600 68.657 67 21 0 59 125 15 81 1.97e-28 111
MS.gene069022.t1 AT4G04580 58.209 67 28 0 57 123 4 70 3.75e-23 94.7
MS.gene069022.t1 AT5G42630 67.213 61 20 0 66 126 104 164 2.09e-22 95.5
MS.gene069022.t1 AT5G42630 67.213 61 20 0 66 126 104 164 2.15e-22 94.4
MS.gene069022.t1 AT1G32240 54.878 82 36 1 61 141 206 287 9.24e-22 95.5
MS.gene069022.t1 AT1G32240 54.878 82 36 1 61 141 206 287 1.24e-21 95.1
MS.gene069022.t1 AT4G04555 60.000 65 26 0 59 123 6 70 1.70e-21 88.6
MS.gene069022.t1 AT5G16560 58.108 74 30 1 61 133 212 285 5.61e-21 93.6
MS.gene069022.t1 AT4G17695 62.295 61 23 0 66 126 163 223 4.09e-20 90.1
MS.gene069022.t1 AT5G45580 62.069 58 22 0 63 120 3 60 2.04e-18 84.3
MS.gene069022.t1 AT5G45580 62.069 58 22 0 63 120 19 76 2.45e-18 84.3
MS.gene069022.t1 AT3G04030 58.929 56 23 0 68 123 46 101 1.75e-17 83.2
MS.gene069022.t1 AT3G04030 58.929 56 23 0 68 123 46 101 2.06e-17 83.2
MS.gene069022.t1 AT3G04450 49.333 75 30 1 57 123 220 294 2.30e-17 82.0
MS.gene069022.t1 AT3G04450 49.333 75 30 1 57 123 180 254 2.53e-17 82.8
MS.gene069022.t1 AT3G04450 49.333 75 30 1 57 123 180 254 2.53e-17 82.8
MS.gene069022.t1 AT3G04450 49.333 75 30 1 57 123 220 294 2.69e-17 83.2
MS.gene069022.t1 AT5G29000 63.636 55 20 0 69 123 190 244 3.39e-17 82.4
MS.gene069022.t1 AT5G29000 63.636 55 20 0 69 123 190 244 3.39e-17 82.4
MS.gene069022.t1 AT5G18240 58.929 56 23 0 68 123 46 101 3.40e-17 82.4
MS.gene069022.t1 AT5G18240 58.929 56 23 0 68 123 46 101 3.40e-17 82.4
MS.gene069022.t1 AT4G28610 61.818 55 21 0 69 123 227 281 3.58e-17 82.4
MS.gene069022.t1 AT5G29000 63.636 55 20 0 69 123 233 287 3.75e-17 81.3
MS.gene069022.t1 AT5G18240 58.929 56 23 0 68 123 46 101 4.00e-17 82.4
MS.gene069022.t1 AT5G18240 58.929 56 23 0 68 123 46 101 4.16e-17 82.4
MS.gene069022.t1 AT5G18240 58.929 56 23 0 68 123 46 101 4.16e-17 82.4
MS.gene069022.t1 AT5G29000 63.636 55 20 0 69 123 233 287 4.41e-17 82.4
MS.gene069022.t1 AT2G01060 61.404 57 22 0 69 125 17 73 1.11e-16 79.7
MS.gene069022.t1 AT3G12730 57.143 56 24 0 68 123 24 79 1.41e-16 78.6
MS.gene069022.t1 AT4G13640 56.604 53 23 0 68 120 38 90 5.36e-16 77.8
MS.gene069022.t1 AT4G13640 56.604 53 23 0 68 120 38 90 5.71e-16 77.8
MS.gene069022.t1 AT3G24120 56.604 53 23 0 68 120 42 94 6.72e-16 77.4
MS.gene069022.t1 AT3G24120 56.604 53 23 0 68 120 42 94 6.95e-16 77.4
MS.gene069022.t1 AT3G13040 59.649 57 23 0 69 125 243 299 7.00e-16 79.0
MS.gene069022.t1 AT3G13040 59.649 57 23 0 69 125 243 299 7.00e-16 79.0
MS.gene069022.t1 AT3G13040 59.649 57 23 0 69 125 243 299 7.00e-16 79.0
MS.gene069022.t1 AT1G79430 55.357 56 25 0 68 123 35 90 1.98e-15 77.0
MS.gene069022.t1 AT2G20400 57.895 57 24 0 69 125 233 289 2.04e-15 77.0
MS.gene069022.t1 AT2G20400 57.895 57 24 0 69 125 233 289 2.07e-15 77.0
MS.gene069022.t1 AT5G06800 54.098 61 28 0 69 129 194 254 3.35e-15 75.5
MS.gene069022.t1 AT3G04030 57.143 56 23 1 68 123 46 100 5.12e-15 75.9
MS.gene069022.t1 AT1G69580 55.357 56 25 0 68 123 35 90 6.41e-15 75.1
MS.gene069022.t1 AT1G69580 55.357 56 25 0 68 123 35 90 7.03e-15 75.1
MS.gene069022.t1 AT5G06800 54.098 61 28 0 69 129 194 254 8.07e-15 75.1
MS.gene069022.t1 AT5G06800 54.098 61 28 0 69 129 194 254 8.37e-15 75.1
MS.gene069022.t1 AT2G06020 36.522 115 62 3 15 120 27 139 4.77e-14 72.4
MS.gene069022.t1 AT5G59570 45.455 88 44 3 35 120 108 193 3.49e-13 69.7
MS.gene069022.t1 AT5G59570 45.455 88 44 3 35 120 108 193 3.49e-13 69.7
MS.gene069022.t1 AT2G40260 58.929 56 21 1 102 157 1 54 1.91e-12 67.4
MS.gene069022.t1 AT1G25550 59.184 49 20 0 72 120 214 262 2.34e-12 67.8
MS.gene069022.t1 AT2G03500 57.143 49 21 0 72 120 238 286 1.12e-11 65.9
MS.gene069022.t1 AT1G25550 45.714 70 34 1 69 138 211 276 1.46e-11 64.7
MS.gene069022.t1 AT3G46640 54.545 55 24 1 66 120 143 196 2.02e-11 64.7
MS.gene069022.t1 AT3G46640 54.545 55 24 1 66 120 143 196 2.02e-11 64.7
MS.gene069022.t1 AT3G46640 54.545 55 24 1 66 120 143 196 3.22e-11 63.9
MS.gene069022.t1 AT3G62670 43.056 72 34 2 53 120 200 268 3.25e-11 64.7

Find 59 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTGAAGAACCAATTT+TGG 0.129269 7.2:-33870355 None:intergenic
TGTTGATAGTTCTCTAAAAT+TGG 0.214021 7.2:-33871434 None:intergenic
GATATTGATGTTGCTATTAT+TGG 0.220373 7.2:-33871380 None:intergenic
CTTCAATTGATGAATATAAA+AGG 0.228877 7.2:+33870367 MS.gene069022:CDS
GAAAGGAGTCAATATTTCTT+TGG 0.270906 7.2:+33871792 MS.gene069022:CDS
CTATACGATGATGTTTGATT+TGG 0.291302 7.2:-33870777 None:intergenic
GGAAATTATCATTTGGTTCA+TGG 0.310661 7.2:-33871465 None:intergenic
GAAAAGAAAAGCTTCAAATA+TGG 0.323316 7.2:+33871603 MS.gene069022:CDS
TCATGTGAAGAGTCATTTAC+AGG 0.340032 7.2:+33870402 MS.gene069022:CDS
TGTAGGAGCAACTCCAAAAT+TGG 0.369328 7.2:+33870342 MS.gene069022:intron
TAGAATATGTCTCATTCATA+TGG 0.376004 7.2:-33871821 None:intergenic
GCCTTGAAGCATGGGAAGTT+GGG 0.390047 7.2:-33870748 None:intergenic
ATTAATTGAAACACTTGCCT+TGG 0.400061 7.2:-33869836 None:intergenic
TATCACTAAAATTAAATTCA+AGG 0.404007 7.2:+33871641 MS.gene069022:CDS
GATCATCTCTTAAAGATTCA+TGG 0.404027 7.2:-33871501 None:intergenic
AATGAGAGGAAATTATCATT+TGG 0.404536 7.2:-33871472 None:intergenic
TAAAATTGGATGAATCCATT+TGG 0.405764 7.2:-33871420 None:intergenic
CTTCATGCTGTGCAAAGACT+TGG 0.407098 7.2:+33870036 MS.gene069022:CDS
AGAAGAACAAGATGGTTCTA+AGG 0.407367 7.2:+33871762 MS.gene069022:CDS
ACCCAACTTCCCATGCTTCA+AGG 0.422458 7.2:+33870747 MS.gene069022:CDS
CAAATCAAACATCATCGTAT+AGG 0.424909 7.2:+33870778 MS.gene069022:CDS
GAATCTAGAGCTGAGTTCTA+TGG 0.429313 7.2:+33871340 MS.gene069022:CDS
TTTACAGATGTGGATCATAT+GGG 0.447788 7.2:+33871266 MS.gene069022:intron
TAACAGTGTTGGCTGATCAT+AGG 0.450325 7.2:+33870685 MS.gene069022:intron
TAATAGCAACATCAATATCC+AGG 0.451694 7.2:+33871384 MS.gene069022:CDS
GAAATGAGATCTTGTGCTCT+TGG 0.453092 7.2:-33871535 None:intergenic
AATCATCTTATGTTAGCAAA+AGG 0.454129 7.2:+33871734 MS.gene069022:CDS
AGAAAACGAAAATGAAGATC+AGG 0.462194 7.2:-33870015 None:intergenic
CCAACGTAGCCTAGGCAACT+TGG 0.470061 7.2:-33869989 None:intergenic
AGCCTTGAAGCATGGGAAGT+TGG 0.470813 7.2:-33870749 None:intergenic
GGAGTATAGCCTTGAAGCAT+GGG 0.488714 7.2:-33870756 None:intergenic
ATGAGAGAGGAAGAAACATA+TGG 0.490280 7.2:+33869802 MS.gene069022:CDS
TTCAAATATGGATCTTGAGT+TGG 0.495575 7.2:+33871615 MS.gene069022:CDS
CATGCTGTGCAAAGACTTGG+TGG 0.512111 7.2:+33870039 MS.gene069022:CDS
TGGAGTATAGCCTTGAAGCA+TGG 0.512500 7.2:-33870757 None:intergenic
GGCAACTTGGATCTAACATA+AGG 0.518664 7.2:-33869976 None:intergenic
ATGTTAGATCCAAGTTGCCT+AGG 0.523365 7.2:+33869980 MS.gene069022:CDS
GGTTCTAAGGAGCAAGAGAA+AGG 0.533531 7.2:+33871775 MS.gene069022:CDS
AAAGTAGTTGACACAAATCA+AGG 0.545661 7.2:+33870558 MS.gene069022:CDS
TGGTGATCATAAATGTATAG+AGG 0.550152 7.2:+33871669 MS.gene069022:CDS
TTTGGAAAATACTATGACCC+TGG 0.552012 7.2:-33871402 None:intergenic
TCAGGAGTCCAACGTAGCCT+AGG 0.559435 7.2:-33869997 None:intergenic
CCAAGTTGCCTAGGCTACGT+TGG 0.561524 7.2:+33869989 MS.gene069022:CDS
TCTTGCCATGTATGAAAACA+TGG 0.579727 7.2:+33871297 MS.gene069022:CDS
CATAGGCTTCTTGTAGACAA+TGG 0.581433 7.2:+33870702 MS.gene069022:CDS
CTAACATAAGGCCTCACTGA+TGG 0.585574 7.2:-33869964 None:intergenic
TTACAGATGTGGATCATATG+GGG 0.594097 7.2:+33871267 MS.gene069022:intron
AGGATTAAAGAAGAACAAGA+TGG 0.602292 7.2:+33871754 MS.gene069022:CDS
AAATTAAATTCAAGGAGCAA+TGG 0.605129 7.2:+33871649 MS.gene069022:CDS
TAACTTGCCTGAAAATCAAG+AGG 0.607982 7.2:+33871564 MS.gene069022:CDS
ATTCATGGCCACAAAATGAG+AGG 0.620365 7.2:-33871486 None:intergenic
GATGTGCAAAAGAACAACAA+TGG 0.621747 7.2:+33869892 MS.gene069022:CDS
AATAGCAACATCAATATCCA+GGG 0.624382 7.2:+33871385 MS.gene069022:CDS
GATGATTGTGAAATTAGTGA+AGG 0.638841 7.2:+33869862 MS.gene069022:CDS
ATATGGATCAGAATGTTCCA+AGG 0.643313 7.2:+33869819 MS.gene069022:CDS
GTGCAAAAGAACAACAATGG+AGG 0.658548 7.2:+33869895 MS.gene069022:CDS
TAGCTAGATGAATATGAGAG+AGG 0.659511 7.2:+33869789 None:intergenic
ATGCTGTGCAAAGACTTGGT+GGG 0.679037 7.2:+33870040 MS.gene069022:CDS
GTGAGAAGAAACCATCAGTG+AGG 0.735513 7.2:+33869953 MS.gene069022:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTAATTTTATTTTT+TGG - chr7.2:33871084-33871103 None:intergenic 0.0%
!!! TTAACCTTTTTTTTTTTTTA+TGG + chr7.2:33870820-33870839 MS.gene069022:intron 10.0%
!! AATAAGTGATTACATAATTA+GGG + chr7.2:33870620-33870639 MS.gene069022:intron 15.0%
!! TAAAAAGTCATAGATAAATA+TGG + chr7.2:33870425-33870444 MS.gene069022:intron 15.0%
!! TATCACTAAAATTAAATTCA+AGG + chr7.2:33871641-33871660 MS.gene069022:CDS 15.0%
!! TTCTCCATAAAAAAAAAAAA+AGG - chr7.2:33870827-33870846 None:intergenic 15.0%
!!! TTTTTTTTTTTTTACAGATG+TGG + chr7.2:33871256-33871275 MS.gene069022:intron 15.0%
!! CAATAAGTGATTACATAATT+AGG + chr7.2:33870619-33870638 MS.gene069022:intron 20.0%
!! CTTCAATTGATGAATATAAA+AGG + chr7.2:33870367-33870386 MS.gene069022:CDS 20.0%
!! GAAAAATTGAAATCTAGAAA+AGG - chr7.2:33870203-33870222 None:intergenic 20.0%
!!! AAGACCTTTTTTTATTCATA+GGG + chr7.2:33870972-33870991 MS.gene069022:intron 20.0%
!!! CTAGATTTCAATTTTTCATA+GGG + chr7.2:33870206-33870225 MS.gene069022:intron 20.0%
!!! TAGATTTCAATTTTTCATAG+GGG + chr7.2:33870207-33870226 MS.gene069022:intron 20.0%
!!! TCTAGATTTCAATTTTTCAT+AGG + chr7.2:33870205-33870224 MS.gene069022:intron 20.0%
!!! TTTTAAACGTAAATGACTTA+AGG - chr7.2:33871159-33871178 None:intergenic 20.0%
!!! TTTTATTTTTTGGTCAAGTT+CGG - chr7.2:33871074-33871093 None:intergenic 20.0%
! AAATTAAATTCAAGGAGCAA+TGG + chr7.2:33871649-33871668 MS.gene069022:CDS 25.0%
! AATCATCTTATGTTAGCAAA+AGG + chr7.2:33871734-33871753 MS.gene069022:CDS 25.0%
! AATGAGAGGAAATTATCATT+TGG - chr7.2:33871475-33871494 None:intergenic 25.0%
! AGTTATCAAAACAAGTACAA+AGG + chr7.2:33871031-33871050 MS.gene069022:intron 25.0%
! ATACATATATGTTATGTGTG+TGG - chr7.2:33870080-33870099 None:intergenic 25.0%
! GAAAAGAAAAGCTTCAAATA+TGG + chr7.2:33871603-33871622 MS.gene069022:CDS 25.0%
! GTAAATGACTTAAGGAAATT+TGG - chr7.2:33871151-33871170 None:intergenic 25.0%
! GTTATCAAAACAAGTACAAA+GGG + chr7.2:33871032-33871051 MS.gene069022:intron 25.0%
! TAAAAAAAGGTCTTCTTAAC+CGG - chr7.2:33870966-33870985 None:intergenic 25.0%
! TAAAATTGGATGAATCCATT+TGG - chr7.2:33871423-33871442 None:intergenic 25.0%
! TGATCCCTATGAATAAAAAA+AGG - chr7.2:33870979-33870998 None:intergenic 25.0%
! TGTTATTGTCTTAGAATTGA+AGG + chr7.2:33871232-33871251 MS.gene069022:intron 25.0%
! TTGTATATATGTAACAGTGT+TGG + chr7.2:33870674-33870693 MS.gene069022:intron 25.0%
!! ATCAATTGAAGAACCAATTT+TGG - chr7.2:33870358-33870377 None:intergenic 25.0%
!! GATATTGATGTTGCTATTAT+TGG - chr7.2:33871383-33871402 None:intergenic 25.0%
!! TTAATGATTTTCTTGTGTGT+AGG + chr7.2:33870325-33870344 MS.gene069022:intron 25.0%
!!! GAAGACCTTTTTTTATTCAT+AGG + chr7.2:33870971-33870990 MS.gene069022:intron 25.0%
!!! TGTTGATAGTTCTCTAAAAT+TGG - chr7.2:33871437-33871456 None:intergenic 25.0%
AAAGCTAGCTAGCTATATAT+AGG - chr7.2:33870457-33870476 None:intergenic 30.0%
AAAGTAGTTGACACAAATCA+AGG + chr7.2:33870558-33870577 MS.gene069022:CDS 30.0%
AATAGCAACATCAATATCCA+GGG + chr7.2:33871385-33871404 MS.gene069022:CDS 30.0%
ACACAAATCAAGGTACAATA+AGG + chr7.2:33870568-33870587 MS.gene069022:intron 30.0%
AGAAAACGAAAATGAAGATC+AGG - chr7.2:33870018-33870037 None:intergenic 30.0%
AGGATTAAAGAAGAACAAGA+TGG + chr7.2:33871754-33871773 MS.gene069022:CDS 30.0%
ATCTATGTGTTTGATCATCA+TGG - chr7.2:33870166-33870185 None:intergenic 30.0%
ATTAATTGAAACACTTGCCT+TGG - chr7.2:33869839-33869858 None:intergenic 30.0%
ATTCTTATCGAAAAACGAGA+AGG - chr7.2:33871009-33871028 None:intergenic 30.0%
CAAATCAAACATCATCGTAT+AGG + chr7.2:33870778-33870797 MS.gene069022:CDS 30.0%
CTATACGATGATGTTTGATT+TGG - chr7.2:33870780-33870799 None:intergenic 30.0%
GAAAGGAGTCAATATTTCTT+TGG + chr7.2:33871792-33871811 MS.gene069022:CDS 30.0%
GATCATCTCTTAAAGATTCA+TGG - chr7.2:33871504-33871523 None:intergenic 30.0%
GATGATTGTGAAATTAGTGA+AGG + chr7.2:33869862-33869881 MS.gene069022:CDS 30.0%
GTAACCTAGAATTTACAACA+TGG + chr7.2:33870134-33870153 MS.gene069022:intron 30.0%
TAATAGCAACATCAATATCC+AGG + chr7.2:33871384-33871403 MS.gene069022:CDS 30.0%
TCAATATCAAGTTAGTCCTA+AGG + chr7.2:33870233-33870252 MS.gene069022:intron 30.0%
TGAATTGATTAACCTACCTT+AGG - chr7.2:33870252-33870271 None:intergenic 30.0%
TGGTGATCATAAATGTATAG+AGG + chr7.2:33871669-33871688 MS.gene069022:CDS 30.0%
TTCAAATATGGATCTTGAGT+TGG + chr7.2:33871615-33871634 MS.gene069022:CDS 30.0%
TTCTTATCGAAAAACGAGAA+GGG - chr7.2:33871008-33871027 None:intergenic 30.0%
TTTACAGATGTGGATCATAT+GGG + chr7.2:33871266-33871285 MS.gene069022:intron 30.0%
! AAGGAAATTTGGAACAAAGT+TGG - chr7.2:33871140-33871159 None:intergenic 30.0%
! AGTAATTTTACAACTGTCGT+TGG - chr7.2:33871213-33871232 None:intergenic 30.0%
! CGTTTAAAATTGTAACCTCA+AGG + chr7.2:33871170-33871189 MS.gene069022:intron 30.0%
! GATAATTTCCTCTCATTTTG+TGG + chr7.2:33871478-33871497 MS.gene069022:CDS 30.0%
! GATTTGAAGTTTAAACCTTG+AGG - chr7.2:33871188-33871207 None:intergenic 30.0%
! GGAAATTATCATTTGGTTCA+TGG - chr7.2:33871468-33871487 None:intergenic 30.0%
! TTGTACCATGTTTTCATACA+TGG - chr7.2:33871305-33871324 None:intergenic 30.0%
! TTTTACAGATGTGGATCATA+TGG + chr7.2:33871265-33871284 MS.gene069022:intron 30.0%
ATATGGATCAGAATGTTCCA+AGG + chr7.2:33869819-33869838 MS.gene069022:CDS 35.0%
ATCTTTAACCATTACCCTTG+AGG + chr7.2:33870937-33870956 MS.gene069022:intron 35.0%
ATGAGAGAGGAAGAAACATA+TGG + chr7.2:33869802-33869821 MS.gene069022:CDS 35.0%
CACACCATGTTGTAAATTCT+AGG - chr7.2:33870141-33870160 None:intergenic 35.0%
CTAGAATTTACAACATGGTG+TGG + chr7.2:33870139-33870158 MS.gene069022:intron 35.0%
CTTTCTTGCTTCTATACATC+TGG - chr7.2:33870542-33870561 None:intergenic 35.0%
GATGTGCAAAAGAACAACAA+TGG + chr7.2:33869892-33869911 MS.gene069022:CDS 35.0%
TATCAAGTTAGTCCTAAGGT+AGG + chr7.2:33870237-33870256 MS.gene069022:intron 35.0%
TCATGTGAAGAGTCATTTAC+AGG + chr7.2:33870402-33870421 MS.gene069022:CDS 35.0%
TCTTGCCATGTATGAAAACA+TGG + chr7.2:33871297-33871316 MS.gene069022:CDS 35.0%
TCTTTAACCATTACCCTTGA+GGG + chr7.2:33870938-33870957 MS.gene069022:intron 35.0%
TTACAGATGTGGATCATATG+GGG + chr7.2:33871267-33871286 MS.gene069022:intron 35.0%
TTTGGAAAATACTATGACCC+TGG - chr7.2:33871405-33871424 None:intergenic 35.0%
! AATTTTACAACTGTCGTTGG+AGG - chr7.2:33871210-33871229 None:intergenic 35.0%
! AGAAGAACAAGATGGTTCTA+AGG + chr7.2:33871762-33871781 MS.gene069022:CDS 35.0%
! AGTTCTTCCTCTTGATTTTC+AGG - chr7.2:33871574-33871593 None:intergenic 35.0%
! GGGTCATAGTATTTTCCAAA+TGG + chr7.2:33871405-33871424 MS.gene069022:CDS 35.0%
! TAACTTGCCTGAAAATCAAG+AGG + chr7.2:33871564-33871583 MS.gene069022:CDS 35.0%
ATGTTAGATCCAAGTTGCCT+AGG + chr7.2:33869980-33869999 MS.gene069022:CDS 40.0%
ATTCATGGCCACAAAATGAG+AGG - chr7.2:33871489-33871508 None:intergenic 40.0%
CATAGGCTTCTTGTAGACAA+TGG + chr7.2:33870702-33870721 MS.gene069022:CDS 40.0%
GAAATGAGATCTTGTGCTCT+TGG - chr7.2:33871538-33871557 None:intergenic 40.0%
GGCAACTTGGATCTAACATA+AGG - chr7.2:33869979-33869998 None:intergenic 40.0%
GTGCAAAAGAACAACAATGG+AGG + chr7.2:33869895-33869914 MS.gene069022:CDS 40.0%
TGTAGGAGCAACTCCAAAAT+TGG + chr7.2:33870342-33870361 MS.gene069022:intron 40.0%
! GAATCTAGAGCTGAGTTCTA+TGG + chr7.2:33871340-33871359 MS.gene069022:CDS 40.0%
!! TAACAGTGTTGGCTGATCAT+AGG + chr7.2:33870685-33870704 MS.gene069022:intron 40.0%
AATGCTAACTAGTGCCCCAA+GGG + chr7.2:33870845-33870864 MS.gene069022:intron 45.0%
CTAACATAAGGCCTCACTGA+TGG - chr7.2:33869967-33869986 None:intergenic 45.0%
CTTAACCAATGCATGCCCTT+GGG - chr7.2:33870863-33870882 None:intergenic 45.0%
CTTCATGCTGTGCAAAGACT+TGG + chr7.2:33870036-33870055 MS.gene069022:CDS 45.0%
GTGAGAAGAAACCATCAGTG+AGG + chr7.2:33869953-33869972 MS.gene069022:CDS 45.0%
TTAACCAATGCATGCCCTTG+GGG - chr7.2:33870862-33870881 None:intergenic 45.0%
! ATGCTGTGCAAAGACTTGGT+GGG + chr7.2:33870040-33870059 MS.gene069022:CDS 45.0%
! GGAGTATAGCCTTGAAGCAT+GGG - chr7.2:33870759-33870778 None:intergenic 45.0%
! TGGAGTATAGCCTTGAAGCA+TGG - chr7.2:33870760-33870779 None:intergenic 45.0%
!! GGTTCTAAGGAGCAAGAGAA+AGG + chr7.2:33871775-33871794 MS.gene069022:CDS 45.0%
ACCCAACTTCCCATGCTTCA+AGG + chr7.2:33870747-33870766 MS.gene069022:CDS 50.0%
AGCCTTGAAGCATGGGAAGT+TGG - chr7.2:33870752-33870771 None:intergenic 50.0%
CATGCTGTGCAAAGACTTGG+TGG + chr7.2:33870039-33870058 MS.gene069022:CDS 50.0%
GAATGCTAACTAGTGCCCCA+AGG + chr7.2:33870844-33870863 MS.gene069022:intron 50.0%
GCCTTGAAGCATGGGAAGTT+GGG - chr7.2:33870751-33870770 None:intergenic 50.0%
GCTTAACCAATGCATGCCCT+TGG - chr7.2:33870864-33870883 None:intergenic 50.0%
TTCTTAACCGGTGCCCTCAA+GGG - chr7.2:33870954-33870973 None:intergenic 50.0%
CCAACGTAGCCTAGGCAACT+TGG - chr7.2:33869992-33870011 None:intergenic 55.0%
CCAAGTTGCCTAGGCTACGT+TGG + chr7.2:33869989-33870008 MS.gene069022:CDS 55.0%
CTTCTTAACCGGTGCCCTCA+AGG - chr7.2:33870955-33870974 None:intergenic 55.0%
TCAGGAGTCCAACGTAGCCT+AGG - chr7.2:33870000-33870019 None:intergenic 55.0%
! ACCATTACCCTTGAGGGCAC+CGG + chr7.2:33870944-33870963 MS.gene069022:intron 55.0%
ACCGGTGCCCTCAAGGGTAA+TGG - chr7.2:33870948-33870967 None:intergenic 60.0%
! AGTGCCCCAAGGGCATGCAT+TGG + chr7.2:33870855-33870874 MS.gene069022:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 33869796 33871828 33869796 ID=MS.gene069022
chr7.2 mRNA 33869796 33871828 33869796 ID=MS.gene069022.t1;Parent=MS.gene069022
chr7.2 exon 33869796 33870069 33869796 ID=MS.gene069022.t1.exon1;Parent=MS.gene069022.t1
chr7.2 CDS 33869796 33870069 33869796 ID=cds.MS.gene069022.t1;Parent=MS.gene069022.t1
chr7.2 exon 33870347 33870423 33870347 ID=MS.gene069022.t1.exon2;Parent=MS.gene069022.t1
chr7.2 CDS 33870347 33870423 33870347 ID=cds.MS.gene069022.t1;Parent=MS.gene069022.t1
chr7.2 exon 33870543 33870579 33870543 ID=MS.gene069022.t1.exon3;Parent=MS.gene069022.t1
chr7.2 CDS 33870543 33870579 33870543 ID=cds.MS.gene069022.t1;Parent=MS.gene069022.t1
chr7.2 exon 33870691 33870799 33870691 ID=MS.gene069022.t1.exon4;Parent=MS.gene069022.t1
chr7.2 CDS 33870691 33870799 33870691 ID=cds.MS.gene069022.t1;Parent=MS.gene069022.t1
chr7.2 exon 33871273 33871828 33871273 ID=MS.gene069022.t1.exon5;Parent=MS.gene069022.t1
chr7.2 CDS 33871273 33871828 33871273 ID=cds.MS.gene069022.t1;Parent=MS.gene069022.t1
Gene Sequence

>MS.gene069022

ATGAATATGAGAGAGGAAGAAACATATGGATCAGAATGTTCCAAGGCAAGTGTTTCAATTAATGAAGATGATTGTGAAATTAGTGAAGGAAATGAAGATGTGCAAAAGAACAACAATGGAGGAATAAGCTCAAGCAATAGTACTATAGAAGAGAATTGTGAGAAGAAACCATCAGTGAGGCCTTATGTTAGATCCAAGTTGCCTAGGCTACGTTGGACTCCTGATCTTCATTTTCGTTTTCTTCATGCTGTGCAAAGACTTGGTGGGCAAGAGAGTAAGTTCCACACACATAACATATATGTATATTTTTCTTATAATTATTAGCTAAGAATTGAAAAGTAACCTAGAATTTACAACATGGTGTGGACCATGATGATCAAACACATAGATATAGCTTCTTTTTGCCTTTTCTAGATTTCAATTTTTCATAGGGGATTTCAATATCAAGTTAGTCCTAAGGTAGGTTAATCAATTCAACAATATGATTATTCTTGTTATTTTAATTTTAATTTTAATTTTGTATGTATTGTTAATGATTTTCTTGTGTGTAGGAGCAACTCCAAAATTGGTTCTTCAATTGATGAATATAAAAGGTTTAAGTATTGCTCATGTGAAGAGTCATTTACAGGTAAAAAGTCATAGATAAATATGGTTGCAACCTATATATAGCTAGCTAGCTTTCAATATTTCTTAAGATTTATAATTGTTTAATTAATTTCTTTTCTTTCACATATATTTCTTTTCCAGATGTATAGAAGCAAGAAAGTAGTTGACACAAATCAAGGTACAATAAGGTTTTTCTTTTTTGTATGAATTCAACTATCAATAAGTGATTACATAATTAGGGTTTGTGCTTGCAAGTCACTAATTATTTATGATTGTATATATGTAACAGTGTTGGCTGATCATAGGCTTCTTGTAGACAATGGAGACAGAAATGTTTATAATCTCACCCAACTTCCCATGCTTCAAGGCTATACTCCAAATCAAACATCATCGTATAGGTATACATATACTACTTGAATTAACCTTTTTTTTTTTTTATGGAGAATGCTAACTAGTGCCCCAAGGGCATGCATTGGTTAAGCATCTAATCAAAAGTAACATCTTATATTTCAAAGACAAAAATTCTATTTGTAGAATCTTTAACCATTACCCTTGAGGGCACCGGTTAAGAAGACCTTTTTTTATTCATAGGGATCATATAAACCCTTCTCGTTTTTCGATAAGAATAAAGTTATCAAAACAAGTACAAAGGGTACTAAAATCGAGTTACCGAACTTGACCAAAAAATAAAATTAAAAAAATCGAGTTACACAAGAACAAAATACGAGTTGCTAACCAACTTTGTTCCAAATTTCCTTAAGTCATTTACGTTTAAAATTGTAACCTCAAGGTTTAAACTTCAAATCCTCCAACGACAGTTGTAAAATTACTGTTATTGTCTTAGAATTGAAGGTTTTTTTTTTTTTTACAGATGTGGATCATATGGGGATGCTTCTCTTGCCATGTATGAAAACATGGTACAAATGAGTTCAATAAGTGAATCTAGAGCTGAGTTCTATGGCAAAATGATTGAGAGAGCCAATAATAGCAACATCAATATCCAGGGTCATAGTATTTTCCAAATGGATTCATCCAATTTTAGAGAACTATCAACAACTAAAGTCCATGAACCAAATGATAATTTCCTCTCATTTTGTGGCCATGAATCTTTAAGAGATGATCTACAAGTTCAGCCAAGAGCACAAGATCTCATTTCGAACGATAACTTGCCTGAAAATCAAGAGGAAGAACTGAAGACAATGAAAAGAAAAGCTTCAAATATGGATCTTGAGTTGGATCTATCACTAAAATTAAATTCAAGGAGCAATGGTGATCATAAATGTATAGAGGAGCATGAAATTGATAGCAATTTATCACTCTCTTTGTATTCTCAATCATCTTATGTTAGCAAAAGGATTAAAGAAGAACAAGATGGTTCTAAGGAGCAAGAGAAAGGAGTCAATATTTCTTTGGATCTAACCATATGA
Protein sequence

>MS.gene069022.t1

MNMREEETYGSECSKASVSINEDDCEISEGNEDVQKNNNGGISSSNSTIEENCEKKPSVRPYVRSKLPRLRWTPDLHFRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVVDTNQVLADHRLLVDNGDRNVYNLTQLPMLQGYTPNQTSSYRCGSYGDASLAMYENMVQMSSISESRAEFYGKMIERANNSNINIQGHSIFQMDSSNFRELSTTKVHEPNDNFLSFCGHESLRDDLQVQPRAQDLISNDNLPENQEEELKTMKRKASNMDLELDLSLKLNSRSNGDHKCIEEHEIDSNLSLSLYSQSSYVSKRIKEEQDGSKEQEKGVNISLDLTI