Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069036.t1 | RHN76102.1 | 89.5 | 86 | 9 | 0 | 5 | 90 | 264 | 349 | 4.60E-33 | 151.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069036.t1 | O65015 | 77.8 | 54 | 12 | 0 | 171 | 224 | 154 | 207 | 3.6e-18 | 93.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069036.t1 | G7IRV1 | 89.5 | 86 | 9 | 0 | 5 | 90 | 336 | 421 | 3.3e-33 | 151.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene069036.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069036.t1 | MTR_2g097410 | 89.535 | 86 | 9 | 0 | 5 | 90 | 336 | 421 | 2.14e-44 | 159 |
| MS.gene069036.t1 | MTR_3g087300 | 90.909 | 55 | 5 | 0 | 5 | 59 | 154 | 208 | 4.69e-27 | 104 |
| MS.gene069036.t1 | MTR_2g089030 | 67.500 | 80 | 24 | 2 | 171 | 250 | 227 | 304 | 6.00e-27 | 109 |
| MS.gene069036.t1 | MTR_4g064150 | 61.039 | 77 | 30 | 0 | 14 | 90 | 335 | 411 | 2.25e-26 | 108 |
| MS.gene069036.t1 | MTR_4g064160 | 61.728 | 81 | 31 | 0 | 9 | 89 | 285 | 365 | 2.25e-24 | 102 |
| MS.gene069036.t1 | MTR_4g064120 | 62.857 | 70 | 26 | 0 | 21 | 90 | 235 | 304 | 2.91e-23 | 99.0 |
| MS.gene069036.t1 | MTR_4g064180 | 61.429 | 70 | 27 | 0 | 21 | 90 | 235 | 304 | 1.51e-22 | 97.1 |
| MS.gene069036.t1 | MTR_3g110530 | 93.478 | 46 | 3 | 0 | 126 | 171 | 208 | 253 | 1.93e-22 | 95.5 |
| MS.gene069036.t1 | MTR_7g062120 | 56.790 | 81 | 35 | 0 | 22 | 102 | 354 | 434 | 2.04e-22 | 96.7 |
| MS.gene069036.t1 | MTR_4g045667 | 58.904 | 73 | 27 | 1 | 155 | 224 | 135 | 207 | 1.64e-20 | 90.9 |
| MS.gene069036.t1 | MTR_2g097390 | 58.462 | 65 | 27 | 0 | 25 | 89 | 260 | 324 | 2.48e-19 | 87.4 |
| MS.gene069036.t1 | MTR_2g097350 | 57.812 | 64 | 27 | 0 | 26 | 89 | 260 | 323 | 1.11e-18 | 85.5 |
| MS.gene069036.t1 | MTR_2g097310 | 60.317 | 63 | 22 | 1 | 30 | 89 | 259 | 321 | 1.43e-17 | 82.4 |
| MS.gene069036.t1 | MTR_2g097463 | 55.556 | 72 | 30 | 1 | 20 | 89 | 268 | 339 | 1.68e-16 | 79.3 |
| MS.gene069036.t1 | MTR_4g064200 | 62.500 | 56 | 21 | 0 | 34 | 89 | 278 | 333 | 1.32e-15 | 76.6 |
| MS.gene069036.t1 | MTR_2g097467 | 50.649 | 77 | 31 | 2 | 20 | 89 | 262 | 338 | 3.58e-14 | 72.4 |
| MS.gene069036.t1 | MTR_2g097473 | 49.351 | 77 | 32 | 1 | 20 | 89 | 262 | 338 | 8.30e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069036.t1 | AT2G32290 | 75.926 | 54 | 13 | 0 | 171 | 224 | 219 | 272 | 2.40e-21 | 93.6 |
| MS.gene069036.t1 | AT1G07530 | 52.381 | 84 | 38 | 1 | 8 | 89 | 362 | 445 | 1.15e-20 | 91.7 |
| MS.gene069036.t1 | AT4G15210 | 66.667 | 54 | 18 | 0 | 171 | 224 | 103 | 156 | 1.22e-19 | 88.2 |
| MS.gene069036.t1 | AT4G15210 | 66.667 | 54 | 18 | 0 | 171 | 224 | 103 | 156 | 1.22e-19 | 88.2 |
| MS.gene069036.t1 | AT4G15210 | 66.667 | 54 | 18 | 0 | 171 | 224 | 156 | 209 | 1.25e-19 | 88.2 |
| MS.gene069036.t1 | AT4G15210 | 66.667 | 54 | 18 | 0 | 171 | 224 | 156 | 209 | 1.27e-19 | 87.8 |
| MS.gene069036.t1 | AT1G07520 | 54.545 | 88 | 38 | 1 | 4 | 89 | 280 | 367 | 3.68e-19 | 87.0 |
| MS.gene069036.t1 | AT1G07520 | 54.545 | 88 | 38 | 1 | 4 | 89 | 281 | 368 | 3.83e-19 | 87.0 |
| MS.gene069036.t1 | AT1G07520 | 50.943 | 106 | 40 | 3 | 4 | 100 | 116 | 218 | 3.91e-19 | 87.0 |
| MS.gene069036.t1 | AT1G07520 | 50.943 | 106 | 40 | 3 | 4 | 100 | 116 | 218 | 3.91e-19 | 87.0 |
| MS.gene069036.t1 | AT2G37650 | 52.703 | 74 | 35 | 0 | 28 | 101 | 335 | 408 | 2.01e-17 | 82.0 |
| MS.gene069036.t1 | AT2G37650 | 52.703 | 74 | 35 | 0 | 28 | 101 | 323 | 396 | 2.45e-17 | 81.6 |
| MS.gene069036.t1 | AT2G29060 | 48.718 | 78 | 40 | 0 | 20 | 97 | 264 | 341 | 3.62e-17 | 81.3 |
| MS.gene069036.t1 | AT2G29060 | 48.718 | 78 | 40 | 0 | 20 | 97 | 301 | 378 | 3.76e-17 | 81.3 |
| MS.gene069036.t1 | AT2G29065 | 62.500 | 56 | 21 | 0 | 34 | 89 | 246 | 301 | 4.76e-14 | 72.0 |
| MS.gene069036.t1 | AT5G59450 | 47.945 | 73 | 35 | 1 | 20 | 89 | 204 | 276 | 3.18e-13 | 69.7 |
| MS.gene069036.t1 | AT4G00490 | 53.704 | 54 | 25 | 0 | 171 | 224 | 236 | 289 | 4.18e-13 | 69.3 |
| MS.gene069036.t1 | AT3G46600 | 47.826 | 69 | 36 | 0 | 21 | 89 | 193 | 261 | 3.02e-12 | 66.6 |
| MS.gene069036.t1 | AT3G46600 | 47.826 | 69 | 36 | 0 | 21 | 89 | 161 | 229 | 3.03e-12 | 66.6 |
| MS.gene069036.t1 | AT2G45880 | 35.106 | 94 | 46 | 1 | 147 | 225 | 350 | 443 | 4.83e-12 | 66.2 |
| MS.gene069036.t1 | AT5G45300 | 46.296 | 54 | 29 | 0 | 171 | 224 | 410 | 463 | 3.10e-11 | 63.5 |
| MS.gene069036.t1 | AT5G45300 | 46.296 | 54 | 29 | 0 | 171 | 224 | 394 | 447 | 3.13e-11 | 63.5 |
| MS.gene069036.t1 | AT5G45300 | 46.296 | 54 | 29 | 0 | 171 | 224 | 396 | 449 | 3.17e-11 | 63.5 |
Find 60 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCGTCTTTCGCGGTTTCT+TGG | 0.271778 | 7.2:-34104825 | MS.gene069036:CDS |
| AGTGACTATGACAATGTAAT+TGG | 0.287106 | 7.2:-34106064 | MS.gene069036:CDS |
| GAAGAGTTATAGAGAGAATA+TGG | 0.309022 | 7.2:-34104282 | MS.gene069036:CDS |
| GGCTGGGTATTTCCTGGTAT+TGG | 0.319528 | 7.2:-34104167 | MS.gene069036:CDS |
| AGGAAGCATTCTTGTCCTTC+AGG | 0.331779 | 7.2:-34106628 | MS.gene069036:CDS |
| GTTATGTGGATTTCACTCTT+TGG | 0.332758 | 7.2:-34104859 | MS.gene069036:CDS |
| TCGCGGTTTCTTGGTAAAAC+AGG | 0.335407 | 7.2:-34104816 | MS.gene069036:CDS |
| TTTCTGTTTACTTTCAGATA+TGG | 0.360156 | 7.2:+34106034 | None:intergenic |
| TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 7.2:-34106716 | MS.gene069036:CDS |
| CTTTAGGTTCCTTTGTTATG+TGG | 0.393628 | 7.2:-34104873 | MS.gene069036:intron |
| CAGGTTCTACATGGTGCATC+TGG | 0.398474 | 7.2:-34106902 | None:intergenic |
| TGCCTAGGCTGGGTATTTCC+TGG | 0.407995 | 7.2:-34104173 | MS.gene069036:CDS |
| ACAGAGGTTGGTGAACTTGA+TGG | 0.421280 | 7.2:-34106781 | MS.gene069036:CDS |
| ATGAATTGTTGAAGCAGAAT+AGG | 0.424251 | 7.2:-34106648 | MS.gene069036:CDS |
| CTGTGTCTGCTAATGACAAT+AGG | 0.426533 | 7.2:-34106678 | MS.gene069036:CDS |
| AGAGGGATGTTGTGGATTTG+AGG | 0.451718 | 7.2:-34106726 | MS.gene069036:CDS |
| AAACAGCATCTCGTCTTTCG+CGG | 0.485483 | 7.2:-34104833 | MS.gene069036:CDS |
| GAGGTAGGACTTGGCCCTGC+TGG | 0.486945 | 7.2:-34104224 | MS.gene069036:CDS |
| CGAAGAAACAAGGGAGGAAG+AGG | 0.489890 | 7.2:-34106744 | MS.gene069036:CDS |
| CTTATAAGCGTGTACGTGGC+AGG | 0.500665 | 7.2:-34103972 | MS.gene069036:CDS |
| CGCGGTTTCTTGGTAAAACA+GGG | 0.510516 | 7.2:-34104815 | MS.gene069036:CDS |
| GCCACTTGAAGGTGGTCTCA+AGG | 0.522314 | 7.2:-34105876 | MS.gene069036:CDS |
| ACCTCCTCTTCTTCTCCAGA+TGG | 0.522445 | 7.2:-34104757 | MS.gene069036:intron |
| AAAGCTTAATGTAAGAATCT+CGG | 0.527749 | 7.2:+34104026 | None:intergenic |
| AGGGAGGAAGAGGGATGTTG+TGG | 0.530372 | 7.2:-34106734 | MS.gene069036:CDS |
| AGATATCTAAGTTCTCCAGC+AGG | 0.532605 | 7.2:+34104209 | None:intergenic |
| AGGTGATGCATCACAGAGAA+TGG | 0.535230 | 7.2:-34106608 | MS.gene069036:CDS |
| AAATTGGAAATGCAGGGGAC+AGG | 0.536511 | 7.2:-34103857 | MS.gene069036:intron |
| CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 7.2:+34106613 | None:intergenic |
| GTGGAGGGTAGAACAGAGGT+TGG | 0.546380 | 7.2:-34106793 | MS.gene069036:CDS |
| CTTGTGCACACAGAACCAAA+AGG | 0.550869 | 7.2:+34106701 | None:intergenic |
| AAAGGATGGATCAGTGGTGG+AGG | 0.552518 | 7.2:-34106809 | MS.gene069036:intron |
| TCCTTGAGACCACCTTCAAG+TGG | 0.557613 | 7.2:+34105875 | None:intergenic |
| CGAACCATCTGGAGAAGAAG+AGG | 0.566975 | 7.2:+34104753 | None:intergenic |
| GCTTTACTCATGATGCTGAA+AGG | 0.577029 | 7.2:-34104008 | MS.gene069036:CDS |
| TTGTGCACACAGAACCAAAA+GGG | 0.577974 | 7.2:+34106702 | None:intergenic |
| ATAGACATTGAGGTAGGACT+TGG | 0.597655 | 7.2:-34104233 | MS.gene069036:CDS |
| TGAGCTACTGATAGACATTG+AGG | 0.599509 | 7.2:-34104243 | MS.gene069036:CDS |
| TGGTGAACTTGATGGAGGGA+AGG | 0.605242 | 7.2:-34106773 | MS.gene069036:CDS |
| GAATGCGATTGAAGCGCGCA+TGG | 0.609128 | 7.2:-34106572 | MS.gene069036:intron |
| CAGTCTTATAAGCGTGTACG+TGG | 0.609552 | 7.2:-34103976 | MS.gene069036:CDS |
| AAGGCACGTTCGAAGAAACA+AGG | 0.620215 | 7.2:-34106754 | MS.gene069036:CDS |
| ACATTAAATTCTCCAATACC+AGG | 0.631717 | 7.2:+34104155 | None:intergenic |
| AGGTTGGTGAACTTGATGGA+GGG | 0.632020 | 7.2:-34106777 | MS.gene069036:CDS |
| GATATCTAAGTTCTCCAGCA+GGG | 0.632849 | 7.2:+34104210 | None:intergenic |
| GAGGTTGGTGAACTTGATGG+AGG | 0.633850 | 7.2:-34106778 | MS.gene069036:CDS |
| TGAAGGTGGTCTCAAGGACA+AGG | 0.634896 | 7.2:-34105870 | MS.gene069036:intron |
| TACCAGGAAATACCCAGCCT+AGG | 0.637604 | 7.2:+34104171 | None:intergenic |
| ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 7.2:-34106812 | MS.gene069036:intron |
| CTACTGATAGACATTGAGGT+AGG | 0.639731 | 7.2:-34104239 | MS.gene069036:CDS |
| ACCATCTGGAGAAGAAGAGG+AGG | 0.646740 | 7.2:+34104756 | None:intergenic |
| GAAGAAACAAGGGAGGAAGA+GGG | 0.647199 | 7.2:-34106743 | MS.gene069036:CDS |
| AAGGATGGATCAGTGGTGGA+GGG | 0.650271 | 7.2:-34106808 | MS.gene069036:CDS |
| GCAGGGGACAGGCTTCCAGT+AGG | 0.671994 | 7.2:-34103846 | None:intergenic |
| GAGTGAAATCCACATAACAA+AGG | 0.672556 | 7.2:+34104864 | None:intergenic |
| TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 7.2:-34106815 | MS.gene069036:intron |
| TGTACGTGGCAGGTTGACCG+AGG | 0.702164 | 7.2:-34103962 | MS.gene069036:intron |
| CACGTTCGAAGAAACAAGGG+AGG | 0.709283 | 7.2:-34106750 | MS.gene069036:CDS |
| AGTGGTGGAGGGTAGAACAG+AGG | 0.716395 | 7.2:-34106797 | MS.gene069036:CDS |
| AGGCACGTTCGAAGAAACAA+GGG | 0.717525 | 7.2:-34106753 | MS.gene069036:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAGATTGAAATA+TGG | + | chr7.2:34104524-34104543 | None:intergenic | 10.0% |
| !!! | TCAATCTTTTTTTTTATTTA+TGG | - | chr7.2:34104528-34104547 | MS.gene069036:intron | 10.0% |
| !! | AAAATAAAACAACTTTCAAA+TGG | + | chr7.2:34104820-34104839 | None:intergenic | 15.0% |
| !! | AAAGAAGTAATAATAAAAAG+TGG | + | chr7.2:34106332-34106351 | None:intergenic | 15.0% |
| !! | AAAGATATTAAATTCATGTA+AGG | - | chr7.2:34106016-34106035 | MS.gene069036:intron | 15.0% |
| !! | AAATTATTGAGAAATAATGT+TGG | - | chr7.2:34105026-34105045 | MS.gene069036:intron | 15.0% |
| !! | TGGAATATTTATATGAAAAT+TGG | - | chr7.2:34106866-34106885 | MS.gene069036:intron | 15.0% |
| !! | TTACATGAATTTAATATCTT+TGG | + | chr7.2:34106017-34106036 | None:intergenic | 15.0% |
| !!! | ATATATGTTGTTTTGTAAAT+AGG | - | chr7.2:34104556-34104575 | MS.gene069036:intron | 15.0% |
| !!! | CATAACAAATTTTAGTAAAA+TGG | + | chr7.2:34106833-34106852 | None:intergenic | 15.0% |
| !!! | TTTATTTTACAAATGAATTG+AGG | - | chr7.2:34104832-34104851 | MS.gene069036:CDS | 15.0% |
| !! | ACTATATGAATTTCAGAATT+TGG | - | chr7.2:34105309-34105328 | MS.gene069036:intron | 20.0% |
| !! | CAAAAATGAAAGCTAATATT+TGG | + | chr7.2:34104318-34104337 | None:intergenic | 20.0% |
| !! | CATATATAATATTTGTGTAC+TGG | + | chr7.2:34104205-34104224 | None:intergenic | 20.0% |
| !! | GTAGGTATTTATTGAATAAA+TGG | - | chr7.2:34104949-34104968 | MS.gene069036:intron | 20.0% |
| !! | GTATGTAACAAACAAAAATA+TGG | + | chr7.2:34105366-34105385 | None:intergenic | 20.0% |
| !! | TATTATATCTCTTTCTCTAT+AGG | - | chr7.2:34106116-34106135 | MS.gene069036:intron | 20.0% |
| !! | TGAACTAAAACAAAAGAATA+CGG | + | chr7.2:34106195-34106214 | None:intergenic | 20.0% |
| !! | TGTTATAATAATGAGTGAAT+AGG | - | chr7.2:34105053-34105072 | MS.gene069036:intron | 20.0% |
| !! | TGTTATGTAATGTTTAATGT+TGG | - | chr7.2:34106846-34106865 | MS.gene069036:intron | 20.0% |
| !!! | AAATGTGCAAATTTTTTGAA+AGG | + | chr7.2:34104291-34104310 | None:intergenic | 20.0% |
| !!! | AAGCATTTATTTTTATCTGA+TGG | - | chr7.2:34105947-34105966 | MS.gene069036:intron | 20.0% |
| !!! | AATGTGCAAATTTTTTGAAA+GGG | + | chr7.2:34104290-34104309 | None:intergenic | 20.0% |
| !!! | ACATACATCTTTAAAAAACA+TGG | + | chr7.2:34104392-34104411 | None:intergenic | 20.0% |
| !!! | ATATAGTTAGTATCACTTTT+AGG | - | chr7.2:34105447-34105466 | MS.gene069036:intron | 20.0% |
| !!! | GTTTTTTAAAGATGTATGTT+TGG | - | chr7.2:34104393-34104412 | MS.gene069036:intron | 20.0% |
| !!! | TTTAAAAAACATGGCAATTT+TGG | + | chr7.2:34104383-34104402 | None:intergenic | 20.0% |
| ! | AAAGCTTAATGTAAGAATCT+CGG | + | chr7.2:34106716-34106735 | None:intergenic | 25.0% |
| ! | AATTCATATAGTTGAAGAAC+TGG | + | chr7.2:34105301-34105320 | None:intergenic | 25.0% |
| ! | AGAACACATATAATTGTGTT+TGG | - | chr7.2:34104900-34104919 | MS.gene069036:intron | 25.0% |
| ! | AGTTAGAGATGAGAAAATTA+AGG | + | chr7.2:34104619-34104638 | None:intergenic | 25.0% |
| ! | AGTTCCTGATGATTATATTT+AGG | - | chr7.2:34105110-34105129 | MS.gene069036:intron | 25.0% |
| ! | ATAATTGTGTTTGTTCATGA+AGG | - | chr7.2:34104461-34104480 | MS.gene069036:intron | 25.0% |
| ! | ATATGAAAATTGGAAATGCA+GGG | - | chr7.2:34106876-34106895 | MS.gene069036:intron | 25.0% |
| ! | CAAACCTAAATATAATCATC+AGG | + | chr7.2:34105117-34105136 | None:intergenic | 25.0% |
| ! | CATGTATATTATCTTGCATA+TGG | - | chr7.2:34104972-34104991 | MS.gene069036:intron | 25.0% |
| ! | GATAGTAATAGAATATGCAA+AGG | + | chr7.2:34106228-34106247 | None:intergenic | 25.0% |
| ! | GCAGACGTAATAAAATTAAT+AGG | + | chr7.2:34105565-34105584 | None:intergenic | 25.0% |
| ! | GTAACAAACAAAAATATGGT+GGG | + | chr7.2:34105362-34105381 | None:intergenic | 25.0% |
| ! | GTACAGAAATTTGAATTCAT+TGG | - | chr7.2:34103863-34103882 | MS.gene069036:intron | 25.0% |
| ! | GTTAGAGATGAGAAAATTAA+GGG | + | chr7.2:34104618-34104637 | None:intergenic | 25.0% |
| ! | GTTATTGAGGGTAATTAAAT+AGG | - | chr7.2:34105753-34105772 | MS.gene069036:intron | 25.0% |
| ! | TAGGAAACTTCTATTTGATT+AGG | - | chr7.2:34104575-34104594 | MS.gene069036:intron | 25.0% |
| ! | TATATGAAAATTGGAAATGC+AGG | - | chr7.2:34106875-34106894 | MS.gene069036:intron | 25.0% |
| ! | TGTAACAAACAAAAATATGG+TGG | + | chr7.2:34105363-34105382 | None:intergenic | 25.0% |
| ! | TTAAAGATGTATGTTTGGAT+TGG | - | chr7.2:34104398-34104417 | MS.gene069036:intron | 25.0% |
| ! | TTTCTGTTTACTTTCAGATA+TGG | + | chr7.2:34104708-34104727 | None:intergenic | 25.0% |
| !! | ATTTTACAAATGAATTGAGG+TGG | - | chr7.2:34104835-34104854 | MS.gene069036:CDS | 25.0% |
| !! | TATCTTCAATGATTTGTGTA+TGG | - | chr7.2:34105251-34105270 | MS.gene069036:intron | 25.0% |
| !! | TATGTTGTTTGTTCATGATT+TGG | + | chr7.2:34106091-34106110 | None:intergenic | 25.0% |
| !! | TCATTGAAGATATTTTGCAT+TGG | + | chr7.2:34105243-34105262 | None:intergenic | 25.0% |
| !! | TTTAACTTCTAATGCAAATC+AGG | - | chr7.2:34105485-34105504 | MS.gene069036:intron | 25.0% |
| !! | TTTGGAATTTCACATACTTT+AGG | - | chr7.2:34105850-34105869 | MS.gene069036:intron | 25.0% |
| !! | TTTGTTTGTTACATACTAGA+TGG | - | chr7.2:34105370-34105389 | MS.gene069036:intron | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | + | chr7.2:34103889-34103908 | None:intergenic | 25.0% |
| !!! | TCTCTAACTTTTGTTTATTG+TGG | - | chr7.2:34104630-34104649 | MS.gene069036:intron | 25.0% |
| !!! | TTCAAGTTTTGCTTATGTTT+AGG | + | chr7.2:34106296-34106315 | None:intergenic | 25.0% |
| AATTTCTGTCTCCTTTACTT+TGG | - | chr7.2:34105706-34105725 | MS.gene069036:intron | 30.0% | |
| ACATTAAATTCTCCAATACC+AGG | + | chr7.2:34106587-34106606 | None:intergenic | 30.0% | |
| AGTGACTATGACAATGTAAT+TGG | - | chr7.2:34104675-34104694 | MS.gene069036:intron | 30.0% | |
| ATGAATTGTTGAAGCAGAAT+AGG | - | chr7.2:34104091-34104110 | MS.gene069036:intron | 30.0% | |
| CGTGTATACATATATGTTCA+TGG | - | chr7.2:34106650-34106669 | MS.gene069036:CDS | 30.0% | |
| GAAGAGTTATAGAGAGAATA+TGG | - | chr7.2:34106457-34106476 | MS.gene069036:intron | 30.0% | |
| TATGAAAATTGGAAATGCAG+GGG | - | chr7.2:34106877-34106896 | MS.gene069036:intron | 30.0% | |
| TCATTTAAACTTACAGACAG+TGG | + | chr7.2:34106262-34106281 | None:intergenic | 30.0% | |
| TCTGAATTATGAATCTTGCA+CGG | - | chr7.2:34104754-34104773 | MS.gene069036:intron | 30.0% | |
| TGAACATATATGTATACACG+TGG | + | chr7.2:34106650-34106669 | None:intergenic | 30.0% | |
| ! | CAAATGGTGTAAAAGCATAT+TGG | + | chr7.2:34104804-34104823 | None:intergenic | 30.0% |
| ! | GAGTGTTTAGATTTGTTTGT+AGG | - | chr7.2:34104425-34104444 | MS.gene069036:intron | 30.0% |
| ! | GATTTGGTTTCTAAACCATA+AGG | + | chr7.2:34106075-34106094 | None:intergenic | 30.0% |
| ! | GGAATTTTGAACTTCATTGA+TGG | - | chr7.2:34104921-34104940 | MS.gene069036:intron | 30.0% |
| ! | TTCTCTATAGGTCTGTTTTA+CGG | - | chr7.2:34106128-34106147 | MS.gene069036:intron | 30.0% |
| !! | AAGCTAAGTTGATGTATCAT+AGG | + | chr7.2:34104501-34104520 | None:intergenic | 30.0% |
| !!! | ACAATTTTTTTCCTTACCCA+TGG | - | chr7.2:34105163-34105182 | MS.gene069036:intron | 30.0% |
| AACACCAATTAAGGGAACTA+AGG | + | chr7.2:34106412-34106431 | None:intergenic | 35.0% | |
| AACCATTCTGACTACCTAAA+AGG | + | chr7.2:34105402-34105421 | None:intergenic | 35.0% | |
| ACACCAATTAAGGGAACTAA+GGG | + | chr7.2:34106411-34106430 | None:intergenic | 35.0% | |
| AGACTTACAAATCCTTAGAC+AGG | + | chr7.2:34104781-34104800 | None:intergenic | 35.0% | |
| AGAGTAATCAGCCAAAGTAA+AGG | + | chr7.2:34105720-34105739 | None:intergenic | 35.0% | |
| CATATAGTTGAAGAACTGGT+AGG | + | chr7.2:34105297-34105316 | None:intergenic | 35.0% | |
| CATGTCATACTAATCTGTGT+TGG | - | chr7.2:34105807-34105826 | MS.gene069036:intron | 35.0% | |
| CTACAAGTGATGGTTATTGA+GGG | - | chr7.2:34105741-34105760 | MS.gene069036:intron | 35.0% | |
| CTGCATCAAACACCAATTAA+GGG | + | chr7.2:34106420-34106439 | None:intergenic | 35.0% | |
| GAAATTGTTCCATCATACCT+CGG | + | chr7.2:34106797-34106816 | None:intergenic | 35.0% | |
| GAGTGAAATCCACATAACAA+AGG | + | chr7.2:34105878-34105897 | None:intergenic | 35.0% | |
| GTATCCTGCATATTGTTTCA+GGG | - | chr7.2:34106679-34106698 | MS.gene069036:CDS | 35.0% | |
| GTCGTAACGAATATTTGCAT+AGG | + | chr7.2:34106173-34106192 | None:intergenic | 35.0% | |
| GTTATGTGGATTTCACTCTT+TGG | - | chr7.2:34105880-34105899 | MS.gene069036:CDS | 35.0% | |
| TCTGCATCAAACACCAATTA+AGG | + | chr7.2:34106421-34106440 | None:intergenic | 35.0% | |
| TGCAAATCAGGACAAACTAA+TGG | - | chr7.2:34105497-34105516 | MS.gene069036:intron | 35.0% | |
| TGTATCCTGCATATTGTTTC+AGG | - | chr7.2:34106678-34106697 | MS.gene069036:CDS | 35.0% | |
| TTGTGTTTGTTCATGAAGGT+TGG | - | chr7.2:34104465-34104484 | MS.gene069036:intron | 35.0% | |
| TTTCCCTTAGTTCCCTTAAT+TGG | - | chr7.2:34106405-34106424 | MS.gene069036:intron | 35.0% | |
| ! | AAAGCTTCATGACATGGTTT+TGG | - | chr7.2:34105832-34105851 | MS.gene069036:intron | 35.0% |
| ! | ACTTCATTGATGGTTGAAGT+AGG | - | chr7.2:34104931-34104950 | MS.gene069036:intron | 35.0% |
| ! | CAGCAGCATTAAACATCTTT+TGG | + | chr7.2:34104230-34104249 | None:intergenic | 35.0% |
| ! | CTTCAATGATTTGTGTATGG+AGG | - | chr7.2:34105254-34105273 | MS.gene069036:intron | 35.0% |
| ! | CTTTAGGTTCCTTTGTTATG+TGG | - | chr7.2:34105866-34105885 | MS.gene069036:intron | 35.0% |
| ! | GCATAAGCAGCTAATTCTTT+TGG | - | chr7.2:34105609-34105628 | MS.gene069036:intron | 35.0% |
| ! | TGATTTTCGCAACTTCCTTA+TGG | - | chr7.2:34106057-34106076 | MS.gene069036:CDS | 35.0% |
| !! | CACTTTTAGGTCATTGCTTT+AGG | - | chr7.2:34105460-34105479 | MS.gene069036:intron | 35.0% |
| !!! | CTTTCTTTTTCAGAATGCCT+AGG | - | chr7.2:34106551-34106570 | MS.gene069036:intron | 35.0% |
| AGATATCTAAGTTCTCCAGC+AGG | + | chr7.2:34106533-34106552 | None:intergenic | 40.0% | |
| AGTTATCACCAATCTGACCA+TGG | + | chr7.2:34105183-34105202 | None:intergenic | 40.0% | |
| ATAGACATTGAGGTAGGACT+TGG | - | chr7.2:34106506-34106525 | MS.gene069036:intron | 40.0% | |
| CTACTGATAGACATTGAGGT+AGG | - | chr7.2:34106500-34106519 | MS.gene069036:intron | 40.0% | |
| CTGTGTCTGCTAATGACAAT+AGG | - | chr7.2:34104061-34104080 | MS.gene069036:intron | 40.0% | |
| GAATATTTGCATAGGCAACG+CGG | + | chr7.2:34106165-34106184 | None:intergenic | 40.0% | |
| GATATCTAAGTTCTCCAGCA+GGG | + | chr7.2:34106532-34106551 | None:intergenic | 40.0% | |
| GATTACTCTGCTACAAGTGA+TGG | - | chr7.2:34105731-34105750 | MS.gene069036:intron | 40.0% | |
| GCTACAAGTGATGGTTATTG+AGG | - | chr7.2:34105740-34105759 | MS.gene069036:intron | 40.0% | |
| GCTTTACTCATGATGCTGAA+AGG | - | chr7.2:34106731-34106750 | MS.gene069036:CDS | 40.0% | |
| GGCAAGCAGAGATAAAAACT+TGG | + | chr7.2:34104269-34104288 | None:intergenic | 40.0% | |
| GTGAGTCTTCACATACACTA+AGG | + | chr7.2:34105145-34105164 | None:intergenic | 40.0% | |
| GTTATCACCAATCTGACCAT+GGG | + | chr7.2:34105182-34105201 | None:intergenic | 40.0% | |
| TGAACAAAAGGATGGATCAG+TGG | - | chr7.2:34103924-34103943 | MS.gene069036:intron | 40.0% | |
| TGAGCTACTGATAGACATTG+AGG | - | chr7.2:34106496-34106515 | MS.gene069036:intron | 40.0% | |
| TTGGTGAAAGCTTCATGACA+TGG | - | chr7.2:34105826-34105845 | MS.gene069036:intron | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | + | chr7.2:34104040-34104059 | None:intergenic | 40.0% | |
| ! | CTAGATGGCATTCACCTTTT+AGG | - | chr7.2:34105385-34105404 | MS.gene069036:intron | 40.0% |
| !! | CACCTTTTAGGTAGTCAGAA+TGG | - | chr7.2:34105397-34105416 | MS.gene069036:intron | 40.0% |
| !! | TTTTTCAGAATGCCTAGGCT+GGG | - | chr7.2:34106556-34106575 | MS.gene069036:intron | 40.0% |
| AAACAGCATCTCGTCTTTCG+CGG | - | chr7.2:34105906-34105925 | MS.gene069036:intron | 45.0% | |
| AAATTGGAAATGCAGGGGAC+AGG | - | chr7.2:34106882-34106901 | MS.gene069036:intron | 45.0% | |
| AAGGCACGTTCGAAGAAACA+AGG | - | chr7.2:34103985-34104004 | MS.gene069036:CDS | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | - | chr7.2:34103927-34103946 | MS.gene069036:intron | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | - | chr7.2:34104013-34104032 | MS.gene069036:CDS | 45.0% | |
| AGCACCCTGAAACAATATGC+AGG | + | chr7.2:34106686-34106705 | None:intergenic | 45.0% | |
| AGGCACGTTCGAAGAAACAA+GGG | - | chr7.2:34103986-34104005 | MS.gene069036:CDS | 45.0% | |
| AGGTGATGCATCACAGAGAA+TGG | - | chr7.2:34104131-34104150 | MS.gene069036:intron | 45.0% | |
| CGCGGTTTCTTGGTAAAACA+GGG | - | chr7.2:34105924-34105943 | MS.gene069036:intron | 45.0% | |
| CTTGTGCACACAGAACCAAA+AGG | + | chr7.2:34104041-34104060 | None:intergenic | 45.0% | |
| GAAGAAACAAGGGAGGAAGA+GGG | - | chr7.2:34103996-34104015 | MS.gene069036:CDS | 45.0% | |
| TCGCGGTTTCTTGGTAAAAC+AGG | - | chr7.2:34105923-34105942 | MS.gene069036:intron | 45.0% | |
| TTCCTTACCCATGGTCAGAT+TGG | - | chr7.2:34105172-34105191 | MS.gene069036:intron | 45.0% | |
| TTGCGTGCTGAACAAAAGGA+TGG | - | chr7.2:34103916-34103935 | MS.gene069036:intron | 45.0% | |
| ! | CAGTCTTATAAGCGTGTACG+TGG | - | chr7.2:34106763-34106782 | MS.gene069036:CDS | 45.0% |
| ! | TGTGGATTTGAGGACCCTTT+TGG | - | chr7.2:34104023-34104042 | MS.gene069036:CDS | 45.0% |
| !! | ACAGAGGTTGGTGAACTTGA+TGG | - | chr7.2:34103958-34103977 | MS.gene069036:intron | 45.0% |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | - | chr7.2:34104111-34104130 | MS.gene069036:intron | 45.0% |
| !! | AGGTGGTTTTTGCCACTTGA+AGG | - | chr7.2:34104852-34104871 | MS.gene069036:CDS | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | - | chr7.2:34103962-34103981 | MS.gene069036:intron | 45.0% |
| !! | TGGTTTTTGCCACTTGAAGG+TGG | - | chr7.2:34104855-34104874 | MS.gene069036:CDS | 45.0% |
| !!! | CTTTTTCAGAATGCCTAGGC+TGG | - | chr7.2:34106555-34106574 | MS.gene069036:intron | 45.0% |
| AAAGGATGGATCAGTGGTGG+AGG | - | chr7.2:34103930-34103949 | MS.gene069036:intron | 50.0% | |
| ACCATCTGGAGAAGAAGAGG+AGG | + | chr7.2:34105986-34106005 | None:intergenic | 50.0% | |
| ACCTCCTCTTCTTCTCCAGA+TGG | - | chr7.2:34105982-34106001 | MS.gene069036:intron | 50.0% | |
| ATAGGCAACGCGGAGTTTGA+AGG | + | chr7.2:34106155-34106174 | None:intergenic | 50.0% | |
| ATCTTGCACGGTCCTGTCTA+AGG | - | chr7.2:34104766-34104785 | MS.gene069036:CDS | 50.0% | |
| CACCAATCTGACCATGGGTA+AGG | + | chr7.2:34105177-34105196 | None:intergenic | 50.0% | |
| CACGTTCGAAGAAACAAGGG+AGG | - | chr7.2:34103989-34104008 | MS.gene069036:CDS | 50.0% | |
| CGAACCATCTGGAGAAGAAG+AGG | + | chr7.2:34105989-34106008 | None:intergenic | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | - | chr7.2:34103995-34104014 | MS.gene069036:CDS | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | + | chr7.2:34104129-34104148 | None:intergenic | 50.0% | |
| CTTATAAGCGTGTACGTGGC+AGG | - | chr7.2:34106767-34106786 | MS.gene069036:CDS | 50.0% | |
| GCTTATGCCCTCTACAACCA+AGG | + | chr7.2:34105597-34105616 | None:intergenic | 50.0% | |
| GGCTGGGTATTTCCTGGTAT+TGG | - | chr7.2:34106572-34106591 | MS.gene069036:intron | 50.0% | |
| GTCGTTGCGTGCTGAACAAA+AGG | - | chr7.2:34103912-34103931 | MS.gene069036:intron | 50.0% | |
| TACCAGGAAATACCCAGCCT+AGG | + | chr7.2:34106571-34106590 | None:intergenic | 50.0% | |
| TCCTTGAGACCACCTTCAAG+TGG | + | chr7.2:34104867-34104886 | None:intergenic | 50.0% | |
| TCTCGTCTTTCGCGGTTTCT+TGG | - | chr7.2:34105914-34105933 | MS.gene069036:intron | 50.0% | |
| TGAAGGTGGTCTCAAGGACA+AGG | - | chr7.2:34104869-34104888 | MS.gene069036:CDS | 50.0% | |
| TGGTGAACTTGATGGAGGGA+AGG | - | chr7.2:34103966-34103985 | MS.gene069036:CDS | 50.0% | |
| ! | AAGGATGGATCAGTGGTGGA+GGG | - | chr7.2:34103931-34103950 | MS.gene069036:intron | 50.0% |
| !! | CTTTGGAGTCACGAACCATC+TGG | + | chr7.2:34106000-34106019 | None:intergenic | 50.0% |
| !! | GAGGTTGGTGAACTTGATGG+AGG | - | chr7.2:34103961-34103980 | MS.gene069036:intron | 50.0% |
| AGCCAACAAGCTTGCAGGAC+TGG | - | chr7.2:34105537-34105556 | MS.gene069036:intron | 55.0% | |
| AGGGAGGAAGAGGGATGTTG+TGG | - | chr7.2:34104005-34104024 | MS.gene069036:CDS | 55.0% | |
| CTACCAGCCAACAAGCTTGC+AGG | - | chr7.2:34105532-34105551 | MS.gene069036:intron | 55.0% | |
| CTCCAGTCCTGCAAGCTTGT+TGG | + | chr7.2:34105542-34105561 | None:intergenic | 55.0% | |
| GAATGCGATTGAAGCGCGCA+TGG | - | chr7.2:34104167-34104186 | MS.gene069036:CDS | 55.0% | |
| GCCACTTGAAGGTGGTCTCA+AGG | - | chr7.2:34104863-34104882 | MS.gene069036:CDS | 55.0% | |
| GTGGAGGGTAGAACAGAGGT+TGG | - | chr7.2:34103946-34103965 | MS.gene069036:intron | 55.0% | |
| TGCCCTCTACAACCAAGGTG+CGG | + | chr7.2:34105592-34105611 | None:intergenic | 55.0% | |
| TGCCTAGGCTGGGTATTTCC+TGG | - | chr7.2:34106566-34106585 | MS.gene069036:intron | 55.0% | |
| ! | AGTGGTGGAGGGTAGAACAG+AGG | - | chr7.2:34103942-34103961 | MS.gene069036:intron | 55.0% |
| ! | GCAGGTTGACCGAGGTATGA+TGG | - | chr7.2:34106785-34106804 | MS.gene069036:CDS | 55.0% |
| !! | AGTCCTGCAAGCTTGTTGGC+TGG | + | chr7.2:34105538-34105557 | None:intergenic | 55.0% |
| ACGCCGCACCTTGGTTGTAG+AGG | - | chr7.2:34105586-34105605 | MS.gene069036:intron | 60.0% | |
| CGCCGCACCTTGGTTGTAGA+GGG | - | chr7.2:34105587-34105606 | MS.gene069036:intron | 60.0% | |
| GCGATTGAAGCGCGCATGGT+TGG | - | chr7.2:34104171-34104190 | MS.gene069036:CDS | 60.0% | |
| ! | TGTACGTGGCAGGTTGACCG+AGG | - | chr7.2:34106777-34106796 | MS.gene069036:CDS | 60.0% |
| ACGTCTGCAACGCCGCACCT+TGG | - | chr7.2:34105577-34105596 | MS.gene069036:intron | 65.0% | |
| GAGGTAGGACTTGGCCCTGC+TGG | - | chr7.2:34106515-34106534 | MS.gene069036:intron | 65.0% | |
| ! | GAAGCGCGCATGGTTGGTGC+TGG | - | chr7.2:34104177-34104196 | MS.gene069036:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 34103847 | 34106914 | 34103847 | ID=MS.gene069036 |
| chr7.2 | mRNA | 34103847 | 34106914 | 34103847 | ID=MS.gene069036.t1;Parent=MS.gene069036 |
| chr7.2 | exon | 34106903 | 34106914 | 34106903 | ID=MS.gene069036.t1.exon1;Parent=MS.gene069036.t1 |
| chr7.2 | CDS | 34106903 | 34106914 | 34106903 | ID=cds.MS.gene069036.t1;Parent=MS.gene069036.t1 |
| chr7.2 | exon | 34106573 | 34106827 | 34106573 | ID=MS.gene069036.t1.exon2;Parent=MS.gene069036.t1 |
| chr7.2 | CDS | 34106573 | 34106827 | 34106573 | ID=cds.MS.gene069036.t1;Parent=MS.gene069036.t1 |
| chr7.2 | exon | 34106028 | 34106101 | 34106028 | ID=MS.gene069036.t1.exon3;Parent=MS.gene069036.t1 |
| chr7.2 | CDS | 34106028 | 34106101 | 34106028 | ID=cds.MS.gene069036.t1;Parent=MS.gene069036.t1 |
| chr7.2 | exon | 34105871 | 34105907 | 34105871 | ID=MS.gene069036.t1.exon4;Parent=MS.gene069036.t1 |
| chr7.2 | CDS | 34105871 | 34105907 | 34105871 | ID=cds.MS.gene069036.t1;Parent=MS.gene069036.t1 |
| chr7.2 | exon | 34104758 | 34104889 | 34104758 | ID=MS.gene069036.t1.exon5;Parent=MS.gene069036.t1 |
| chr7.2 | CDS | 34104758 | 34104889 | 34104758 | ID=cds.MS.gene069036.t1;Parent=MS.gene069036.t1 |
| chr7.2 | exon | 34104157 | 34104321 | 34104157 | ID=MS.gene069036.t1.exon6;Parent=MS.gene069036.t1 |
| chr7.2 | CDS | 34104157 | 34104321 | 34104157 | ID=cds.MS.gene069036.t1;Parent=MS.gene069036.t1 |
| chr7.2 | exon | 34103963 | 34104061 | 34103963 | ID=MS.gene069036.t1.exon7;Parent=MS.gene069036.t1 |
| chr7.2 | CDS | 34103963 | 34104061 | 34103963 | ID=cds.MS.gene069036.t1;Parent=MS.gene069036.t1 |
| chr7.2 | exon | 34103847 | 34103864 | 34103847 | ID=MS.gene069036.t1.exon8;Parent=MS.gene069036.t1 |
| chr7.2 | CDS | 34103847 | 34103864 | 34103847 | ID=cds.MS.gene069036.t1;Parent=MS.gene069036.t1 |
| Gene Sequence |
| Protein sequence |
