Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06905.t1 | AES72521.1 | 62.5 | 301 | 72 | 4 | 1 | 300 | 1 | 261 | 1.20E-93 | 353.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06905.t1 | Q9LVU8 | 52.8 | 108 | 51 | 0 | 187 | 294 | 142 | 249 | 2.6e-25 | 117.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06905.t1 | G7J7G0 | 62.5 | 301 | 72 | 4 | 1 | 300 | 1 | 261 | 8.5e-94 | 353.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06905.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06905.t1 | MTR_3g091700 | 64.784 | 301 | 65 | 4 | 1 | 300 | 1 | 261 | 1.61e-135 | 384 |
| MS.gene06905.t1 | MTR_3g435550 | 47.321 | 112 | 53 | 1 | 193 | 298 | 59 | 170 | 4.40e-29 | 110 |
| MS.gene06905.t1 | MTR_5g024070 | 37.719 | 114 | 58 | 1 | 193 | 293 | 201 | 314 | 1.68e-19 | 87.4 |
| MS.gene06905.t1 | MTR_3g091720 | 75.000 | 52 | 6 | 1 | 249 | 300 | 19 | 63 | 1.63e-17 | 75.5 |
| MS.gene06905.t1 | MTR_0140s0010 | 28.652 | 178 | 107 | 6 | 138 | 299 | 65 | 238 | 4.15e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06905.t1 | AT5G53040 | 52.381 | 105 | 50 | 0 | 193 | 297 | 148 | 252 | 2.33e-32 | 120 |
| MS.gene06905.t1 | AT5G66990 | 49.550 | 111 | 45 | 1 | 198 | 297 | 164 | 274 | 1.60e-31 | 119 |
| MS.gene06905.t1 | AT1G18790 | 44.094 | 127 | 54 | 2 | 178 | 294 | 120 | 239 | 4.82e-28 | 109 |
| MS.gene06905.t1 | AT1G74480 | 43.443 | 122 | 59 | 1 | 179 | 290 | 121 | 242 | 3.55e-27 | 107 |
| MS.gene06905.t1 | AT4G35590 | 33.824 | 136 | 70 | 2 | 179 | 294 | 171 | 306 | 2.08e-17 | 81.6 |
| MS.gene06905.t1 | AT4G35590 | 33.824 | 136 | 70 | 2 | 179 | 294 | 221 | 356 | 2.99e-17 | 81.6 |
| MS.gene06905.t1 | AT5G16100 | 38.462 | 91 | 48 | 1 | 187 | 269 | 348 | 438 | 2.26e-12 | 67.4 |
Find 56 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTAAAGCAACATTTA+AGG | 0.169846 | 3.2:+77137088 | None:intergenic |
| CATTGCAATTTGATGATATA+AGG | 0.198698 | 3.2:-77136767 | MS.gene06905:CDS |
| TCGGTGTAATGCCCCATTTC+AGG | 0.239025 | 3.2:+77137071 | None:intergenic |
| AAATGTTGCTTTACCTGAAA+TGG | 0.239415 | 3.2:-77137084 | MS.gene06905:CDS |
| TCTTCATTCAATTCCATTTC+AGG | 0.242189 | 3.2:+77136281 | None:intergenic |
| TTGTAGCCTTGAGCGATTTC+AGG | 0.264499 | 3.2:+77137690 | None:intergenic |
| GCCTTGAGCGATTTCAGGTT+GGG | 0.343692 | 3.2:+77137695 | None:intergenic |
| AACTACTTTGATCAAGGTAT+TGG | 0.343714 | 3.2:+77137129 | None:intergenic |
| TCAGGTAAAGCAACATTTAA+GGG | 0.355156 | 3.2:+77137089 | None:intergenic |
| AATGTTGCTTTACCTGAAAT+GGG | 0.356567 | 3.2:-77137083 | MS.gene06905:CDS |
| TTGTGAACAAACAAGAGAAA+TGG | 0.359147 | 3.2:-77136977 | MS.gene06905:CDS |
| ATGATTTCATTGAGTTTGAT+TGG | 0.364629 | 3.2:-77137235 | MS.gene06905:CDS |
| TGACCTCTTCCTTATGATAC+TGG | 0.365686 | 3.2:+77136794 | None:intergenic |
| GCTTACTTGTCTGTGTTGTT+TGG | 0.372451 | 3.2:+77137642 | None:intergenic |
| AGCAATACTCTTCCCTTTGT+CGG | 0.387658 | 3.2:+77137052 | None:intergenic |
| GTTGAGGCTTCCAAGAAAAC+AGG | 0.393183 | 3.2:-77137017 | MS.gene06905:CDS |
| CCCTGCATCTATTCTTCAAA+AGG | 0.394587 | 3.2:+77136688 | None:intergenic |
| GTTAGAGAAACTTCCTGAAA+TGG | 0.395826 | 3.2:-77136294 | MS.gene06905:CDS |
| GAGTGGATTTGTTGAAGCTT+CGG | 0.430431 | 3.2:-77136913 | MS.gene06905:CDS |
| TGTTGTGTGATGCAGGAAAT+GGG | 0.433682 | 3.2:-77136359 | MS.gene06905:intron |
| GGCAAACGAGGTTGCTATGA+TGG | 0.435987 | 3.2:-77136333 | MS.gene06905:CDS |
| TGTGAACAAACAAGAGAAAT+GGG | 0.437906 | 3.2:-77136976 | MS.gene06905:CDS |
| TGTACTCATCGACAACCTTA+AGG | 0.442882 | 3.2:-77136619 | MS.gene06905:intron |
| AACTCAATGAAATCATCAAA+TGG | 0.477184 | 3.2:+77137242 | None:intergenic |
| AAATCGCTCAAGGCTACAAC+TGG | 0.479818 | 3.2:-77137686 | MS.gene06905:CDS |
| CTGCTACTTGGCAATGGTAG+TGG | 0.480934 | 3.2:+77136825 | None:intergenic |
| CTGGTACTAGTACTGCTACT+TGG | 0.482625 | 3.2:+77136813 | None:intergenic |
| TGATTTCATTGAGTTTGATT+GGG | 0.486276 | 3.2:-77137234 | MS.gene06905:CDS |
| AGGTTGAAGCTCAAGGGTTG+AGG | 0.489859 | 3.2:+77136198 | None:intergenic |
| TGTGATGCAGGAAATGGGTT+TGG | 0.499818 | 3.2:-77136354 | MS.gene06905:intron |
| GTACTAGTACCAGTATCATA+AGG | 0.506441 | 3.2:-77136803 | MS.gene06905:CDS |
| TTGTGAAGAAAGAGGTTGAA+GGG | 0.507686 | 3.2:-77136863 | MS.gene06905:CDS |
| TCTCAAAACTACTTTGATCA+AGG | 0.511922 | 3.2:+77137123 | None:intergenic |
| CTATGATGGAGAAGAAGAAA+AGG | 0.520048 | 3.2:-77136319 | MS.gene06905:CDS |
| AAGATCATTGAACCACCCAT+TGG | 0.537266 | 3.2:+77137175 | None:intergenic |
| AGCCTTGAGCGATTTCAGGT+TGG | 0.544838 | 3.2:+77137694 | None:intergenic |
| TTTGTGAAGAAAGAGGTTGA+AGG | 0.545050 | 3.2:-77136864 | MS.gene06905:CDS |
| GGTTGAAGCTCAAGGGTTGA+GGG | 0.549829 | 3.2:+77136199 | None:intergenic |
| TGTGAAGAAAGAGGTTGAAG+GGG | 0.555743 | 3.2:-77136862 | MS.gene06905:CDS |
| ATGGGGCATTACACCGACAA+AGG | 0.558093 | 3.2:-77137065 | MS.gene06905:CDS |
| TGGGGCATTACACCGACAAA+GGG | 0.567564 | 3.2:-77137064 | MS.gene06905:CDS |
| CCTGCATCTATTCTTCAAAA+GGG | 0.589493 | 3.2:+77136689 | None:intergenic |
| ACATTGAGTGCTGCTGAGAG+TGG | 0.594289 | 3.2:-77136930 | MS.gene06905:CDS |
| GTACCAGTATCATAAGGAAG+AGG | 0.604409 | 3.2:-77136797 | MS.gene06905:CDS |
| GGGAAGAGTATTGCTGAGAG+TGG | 0.605279 | 3.2:-77137044 | MS.gene06905:CDS |
| GGAAATGGGTTTGGCAAACG+AGG | 0.606744 | 3.2:-77136345 | MS.gene06905:CDS |
| CTAGTACTGCTACTTGGCAA+TGG | 0.610956 | 3.2:+77136819 | None:intergenic |
| ACCCAACCTGAAATCGCTCA+AGG | 0.612787 | 3.2:-77137696 | MS.gene06905:CDS |
| ATGTTGCTTTACCTGAAATG+GGG | 0.616338 | 3.2:-77137082 | MS.gene06905:CDS |
| GCAGGGAGCTCAACATCACT+AGG | 0.620032 | 3.2:-77136671 | MS.gene06905:CDS |
| GGTGGCCTCACAGAAAATTG+AGG | 0.625800 | 3.2:-77136650 | MS.gene06905:CDS |
| ATGAAGAAATCAAGAAGCTG+AGG | 0.626377 | 3.2:-77136265 | MS.gene06905:CDS |
| GCTGCTAAGAAAATGAATGT+TGG | 0.631864 | 3.2:-77136717 | MS.gene06905:CDS |
| GCACTCAATGTCAATGACAA+TGG | 0.653270 | 3.2:+77136942 | None:intergenic |
| AGGTTGGGTGAAGAACTCCA+TGG | 0.704568 | 3.2:+77137710 | None:intergenic |
| GGGAGCTCAACATCACTAGG+TGG | 0.707852 | 3.2:-77136668 | MS.gene06905:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGTTAAAAAAG+GGG | + | chr3.2:77136612-77136631 | None:intergenic | 10.0% |
| !! | ACAAAAAAAAAAGTTAAAAA+AGG | + | chr3.2:77136614-77136633 | None:intergenic | 10.0% |
| !! | CAAAAAAAAAAGTTAAAAAA+GGG | + | chr3.2:77136613-77136632 | None:intergenic | 10.0% |
| !!! | ATAAATAATTTTTTATCAAC+TGG | - | chr3.2:77137514-77137533 | MS.gene06905:intron | 10.0% |
| !! | AACATAAAGAATATACCTTA+AGG | + | chr3.2:77137315-77137334 | None:intergenic | 20.0% |
| !! | TAAAAATTGAATAAGAACAG+AGG | + | chr3.2:77136413-77136432 | None:intergenic | 20.0% |
| !! | TTTATCTATTACTTTGACTA+TGG | - | chr3.2:77136429-77136448 | MS.gene06905:intron | 20.0% |
| !!! | TTTTGATGTTCCTTTAAAAA+TGG | - | chr3.2:77137177-77137196 | MS.gene06905:CDS | 20.0% |
| ! | AAAGTTAAAAAAGGGGAAAA+CGG | + | chr3.2:77136605-77136624 | None:intergenic | 25.0% |
| ! | AACTCAATGAAATCATCAAA+TGG | + | chr3.2:77136677-77136696 | None:intergenic | 25.0% |
| ! | ATCCAAACAAAGATAATGTT+AGG | + | chr3.2:77137376-77137395 | None:intergenic | 25.0% |
| ! | ATGATTTCATTGAGTTTGAT+TGG | - | chr3.2:77136681-77136700 | MS.gene06905:CDS | 25.0% |
| ! | ATTTCAATTGTCATTCAAAG+TGG | + | chr3.2:77137435-77137454 | None:intergenic | 25.0% |
| ! | GTAAAAAACAGAACAAGTTA+GGG | + | chr3.2:77136391-77136410 | None:intergenic | 25.0% |
| ! | TGATTTCATTGAGTTTGATT+GGG | - | chr3.2:77136682-77136701 | MS.gene06905:CDS | 25.0% |
| ! | TGGTGTAAAAATGATTACTT+TGG | + | chr3.2:77136724-77136743 | None:intergenic | 25.0% |
| ! | TTCCTAACATTATCTTTGTT+TGG | - | chr3.2:77137371-77137390 | MS.gene06905:intron | 25.0% |
| ! | TTTCAATTGTCATTCAAAGT+GGG | + | chr3.2:77137434-77137453 | None:intergenic | 25.0% |
| !! | CATTGCAATTTGATGATATA+AGG | - | chr3.2:77137149-77137168 | MS.gene06905:CDS | 25.0% |
| !! | TTTGAAGTACTTAACAATGT+GGG | + | chr3.2:77137350-77137369 | None:intergenic | 25.0% |
| !! | TTTTAATGTGTACAGAATCA+TGG | - | chr3.2:77136643-77136662 | MS.gene06905:CDS | 25.0% |
| !!! | AGTAATCATTTTTACACCAA+TGG | - | chr3.2:77136725-77136744 | MS.gene06905:CDS | 25.0% |
| !!! | ATTTTTTATCAACTGGTCAT+AGG | - | chr3.2:77137521-77137540 | MS.gene06905:intron | 25.0% |
| !!! | GTAATCATTTTTACACCAAT+GGG | - | chr3.2:77136726-77136745 | MS.gene06905:CDS | 25.0% |
| !!! | TTTTGAAGTACTTAACAATG+TGG | + | chr3.2:77137351-77137370 | None:intergenic | 25.0% |
| AAAGAATGAACATCGAATCA+TGG | + | chr3.2:77136322-77136341 | None:intergenic | 30.0% | |
| AACTACTTTGATCAAGGTAT+TGG | + | chr3.2:77136790-77136809 | None:intergenic | 30.0% | |
| AATCATGGTTGAAATGAAAC+TGG | + | chr3.2:77136307-77136326 | None:intergenic | 30.0% | |
| ATTCATAACAGCCAACAAAA+AGG | + | chr3.2:77137493-77137512 | None:intergenic | 30.0% | |
| GAAACTTGAAACTGTAGTTT+GGG | - | chr3.2:77137462-77137481 | MS.gene06905:intron | 30.0% | |
| GGTAAAAAACAGAACAAGTT+AGG | + | chr3.2:77136392-77136411 | None:intergenic | 30.0% | |
| TCAGGTAAAGCAACATTTAA+GGG | + | chr3.2:77136830-77136849 | None:intergenic | 30.0% | |
| TCTCAAAACTACTTTGATCA+AGG | + | chr3.2:77136796-77136815 | None:intergenic | 30.0% | |
| TCTTCATTCAATTCCATTTC+AGG | + | chr3.2:77137638-77137657 | None:intergenic | 30.0% | |
| TGAAACTTGAAACTGTAGTT+TGG | - | chr3.2:77137461-77137480 | MS.gene06905:intron | 30.0% | |
| TGTGAACAAACAAGAGAAAT+GGG | - | chr3.2:77136940-77136959 | MS.gene06905:CDS | 30.0% | |
| TTCAGGTAAAGCAACATTTA+AGG | + | chr3.2:77136831-77136850 | None:intergenic | 30.0% | |
| TTGTGAACAAACAAGAGAAA+TGG | - | chr3.2:77136939-77136958 | MS.gene06905:CDS | 30.0% | |
| ! | TTGAAGTACTTAACAATGTG+GGG | + | chr3.2:77137349-77137368 | None:intergenic | 30.0% |
| !! | AAACTGATTTCCTGTTTTCT+TGG | + | chr3.2:77136912-77136931 | None:intergenic | 30.0% |
| !! | AAATGTTGCTTTACCTGAAA+TGG | - | chr3.2:77136832-77136851 | MS.gene06905:CDS | 30.0% |
| !! | AATGTTGCTTTACCTGAAAT+GGG | - | chr3.2:77136833-77136852 | MS.gene06905:CDS | 30.0% |
| !! | ATTATTTTGTTGTGTGATGC+AGG | - | chr3.2:77137550-77137569 | MS.gene06905:intron | 30.0% |
| !!! | TTCTTAGCAGCCATTTTTAA+AGG | + | chr3.2:77137190-77137209 | None:intergenic | 30.0% |
| AATGTTCCACACATCATTCT+CGG | + | chr3.2:77136524-77136543 | None:intergenic | 35.0% | |
| AGTTAGGGTGATGTAGATTA+AGG | + | chr3.2:77136376-77136395 | None:intergenic | 35.0% | |
| ATGAAGAAATCAAGAAGCTG+AGG | - | chr3.2:77137651-77137670 | MS.gene06905:CDS | 35.0% | |
| CCTGCATCTATTCTTCAAAA+GGG | + | chr3.2:77137230-77137249 | None:intergenic | 35.0% | |
| GAGCATTAGACTCAAATTGT+AGG | - | chr3.2:77137401-77137420 | MS.gene06905:intron | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | - | chr3.2:77137199-77137218 | MS.gene06905:CDS | 35.0% | |
| GTACTAGTACCAGTATCATA+AGG | - | chr3.2:77137113-77137132 | MS.gene06905:CDS | 35.0% | |
| GTTAGAGAAACTTCCTGAAA+TGG | - | chr3.2:77137622-77137641 | MS.gene06905:intron | 35.0% | |
| TTGTGAAGAAAGAGGTTGAA+GGG | - | chr3.2:77137053-77137072 | MS.gene06905:CDS | 35.0% | |
| TTTGTGAAGAAAGAGGTTGA+AGG | - | chr3.2:77137052-77137071 | MS.gene06905:CDS | 35.0% | |
| ! | AAAAACTGAAAGTGGGTTTG+TGG | - | chr3.2:77137027-77137046 | MS.gene06905:CDS | 35.0% |
| ! | CTATGATGGAGAAGAAGAAA+AGG | - | chr3.2:77137597-77137616 | MS.gene06905:intron | 35.0% |
| ! | TGAAGTACTTAACAATGTGG+GGG | + | chr3.2:77137348-77137367 | None:intergenic | 35.0% |
| ! | TGTGGATTTTGTGAAGAAAG+AGG | - | chr3.2:77137045-77137064 | MS.gene06905:CDS | 35.0% |
| !! | ATCATTTTTACACCAATGGG+TGG | - | chr3.2:77136729-77136748 | MS.gene06905:CDS | 35.0% |
| !! | ATGTTGCTTTACCTGAAATG+GGG | - | chr3.2:77136834-77136853 | MS.gene06905:CDS | 35.0% |
| !! | CCTTTTGAAGAATAGATGCA+GGG | - | chr3.2:77137228-77137247 | MS.gene06905:CDS | 35.0% |
| AAGATCATTGAACCACCCAT+TGG | + | chr3.2:77136744-77136763 | None:intergenic | 40.0% | |
| ACTTGAAACTGTAGTTTGGG+TGG | - | chr3.2:77137465-77137484 | MS.gene06905:intron | 40.0% | |
| AGCAATACTCTTCCCTTTGT+CGG | + | chr3.2:77136867-77136886 | None:intergenic | 40.0% | |
| ATCAACCTCGAAAGTCGTAA+CGG | + | chr3.2:77136548-77136567 | None:intergenic | 40.0% | |
| CCCTGCATCTATTCTTCAAA+AGG | + | chr3.2:77137231-77137250 | None:intergenic | 40.0% | |
| CTTCGGCAAAAACTGAAAGT+GGG | - | chr3.2:77137020-77137039 | MS.gene06905:CDS | 40.0% | |
| GCACTCAATGTCAATGACAA+TGG | + | chr3.2:77136977-77136996 | None:intergenic | 40.0% | |
| GTACCAGTATCATAAGGAAG+AGG | - | chr3.2:77137119-77137138 | MS.gene06905:CDS | 40.0% | |
| TAGACTCAAATTGTAGGACC+AGG | - | chr3.2:77137407-77137426 | MS.gene06905:intron | 40.0% | |
| TGACCTCTTCCTTATGATAC+TGG | + | chr3.2:77137125-77137144 | None:intergenic | 40.0% | |
| TGTACTCATCGACAACCTTA+AGG | - | chr3.2:77137297-77137316 | MS.gene06905:intron | 40.0% | |
| TGTGAAGAAAGAGGTTGAAG+GGG | - | chr3.2:77137054-77137073 | MS.gene06905:CDS | 40.0% | |
| TGTTGTGTGATGCAGGAAAT+GGG | - | chr3.2:77137557-77137576 | MS.gene06905:intron | 40.0% | |
| TTGTTGTGTGATGCAGGAAA+TGG | - | chr3.2:77137556-77137575 | MS.gene06905:intron | 40.0% | |
| ! | AAGCTCCTCAATTTTCTGTG+AGG | + | chr3.2:77137274-77137293 | None:intergenic | 40.0% |
| ! | GAAGTACTTAACAATGTGGG+GGG | + | chr3.2:77137347-77137366 | None:intergenic | 40.0% |
| ! | GCTTACTTGTCTGTGTTGTT+TGG | + | chr3.2:77136277-77136296 | None:intergenic | 40.0% |
| !! | CCCTTTTGAAGAATAGATGC+AGG | - | chr3.2:77137227-77137246 | MS.gene06905:CDS | 40.0% |
| !! | GAGTGGATTTGTTGAAGCTT+CGG | - | chr3.2:77137003-77137022 | MS.gene06905:CDS | 40.0% |
| AAATCGCTCAAGGCTACAAC+TGG | - | chr3.2:77136230-77136249 | MS.gene06905:CDS | 45.0% | |
| AGTCTTCCGAGAATGATGTG+TGG | - | chr3.2:77136515-77136534 | MS.gene06905:intron | 45.0% | |
| CTGGTACTAGTACTGCTACT+TGG | + | chr3.2:77137106-77137125 | None:intergenic | 45.0% | |
| GCTTCGGCAAAAACTGAAAG+TGG | - | chr3.2:77137019-77137038 | MS.gene06905:CDS | 45.0% | |
| GTTGAGGCTTCCAAGAAAAC+AGG | - | chr3.2:77136899-77136918 | MS.gene06905:CDS | 45.0% | |
| TTGTCATTCAAAGTGGGTCC+TGG | + | chr3.2:77137428-77137447 | None:intergenic | 45.0% | |
| ! | CTAGTACTGCTACTTGGCAA+TGG | + | chr3.2:77137100-77137119 | None:intergenic | 45.0% |
| ! | TGTGATGCAGGAAATGGGTT+TGG | - | chr3.2:77137562-77137581 | MS.gene06905:intron | 45.0% |
| ! | TTGTAGCCTTGAGCGATTTC+AGG | + | chr3.2:77136229-77136248 | None:intergenic | 45.0% |
| ! | TTTGGGTGGAGCCTTTTTGT+TGG | - | chr3.2:77137479-77137498 | MS.gene06905:intron | 45.0% |
| !!! | TGCTGAGAGTGGTTTTGTTG+AGG | - | chr3.2:77136883-77136902 | MS.gene06905:CDS | 45.0% |
| ACCCAACCTGAAATCGCTCA+AGG | - | chr3.2:77136220-77136239 | MS.gene06905:CDS | 50.0% | |
| CATTGCCGTTACGACTTTCG+AGG | - | chr3.2:77136540-77136559 | MS.gene06905:intron | 50.0% | |
| GGCAAACGAGGTTGCTATGA+TGG | - | chr3.2:77137583-77137602 | MS.gene06905:intron | 50.0% | |
| GGTGGCCTCACAGAAAATTG+AGG | - | chr3.2:77137266-77137285 | MS.gene06905:intron | 50.0% | |
| TCGGTGTAATGCCCCATTTC+AGG | + | chr3.2:77136848-77136867 | None:intergenic | 50.0% | |
| ! | ACATTGAGTGCTGCTGAGAG+TGG | - | chr3.2:77136986-77137005 | MS.gene06905:CDS | 50.0% |
| ! | AGCCTTGAGCGATTTCAGGT+TGG | + | chr3.2:77136225-77136244 | None:intergenic | 50.0% |
| ! | ATGGGGCATTACACCGACAA+AGG | - | chr3.2:77136851-77136870 | MS.gene06905:CDS | 50.0% |
| ! | CTGCTACTTGGCAATGGTAG+TGG | + | chr3.2:77137094-77137113 | None:intergenic | 50.0% |
| ! | GGAAATGGGTTTGGCAAACG+AGG | - | chr3.2:77137571-77137590 | MS.gene06905:intron | 50.0% |
| ! | TGGGGCATTACACCGACAAA+GGG | - | chr3.2:77136852-77136871 | MS.gene06905:CDS | 50.0% |
| !! | GCCTTGAGCGATTTCAGGTT+GGG | + | chr3.2:77136224-77136243 | None:intergenic | 50.0% |
| !! | GGGAAGAGTATTGCTGAGAG+TGG | - | chr3.2:77136872-77136891 | MS.gene06905:CDS | 50.0% |
| GCAGGGAGCTCAACATCACT+AGG | - | chr3.2:77137245-77137264 | MS.gene06905:CDS | 55.0% | |
| GGGAGCTCAACATCACTAGG+TGG | - | chr3.2:77137248-77137267 | MS.gene06905:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 77136208 | 77137730 | 77136208 | ID=MS.gene06905 |
| chr3.2 | mRNA | 77136208 | 77137730 | 77136208 | ID=MS.gene06905.t1;Parent=MS.gene06905 |
| chr3.2 | exon | 77137648 | 77137730 | 77137648 | ID=MS.gene06905.t1.exon1;Parent=MS.gene06905.t1 |
| chr3.2 | CDS | 77137648 | 77137730 | 77137648 | ID=cds.MS.gene06905.t1;Parent=MS.gene06905.t1 |
| chr3.2 | exon | 77136620 | 77137280 | 77136620 | ID=MS.gene06905.t1.exon2;Parent=MS.gene06905.t1 |
| chr3.2 | CDS | 77136620 | 77137280 | 77136620 | ID=cds.MS.gene06905.t1;Parent=MS.gene06905.t1 |
| chr3.2 | exon | 77136208 | 77136366 | 77136208 | ID=MS.gene06905.t1.exon3;Parent=MS.gene06905.t1 |
| chr3.2 | CDS | 77136208 | 77136366 | 77136208 | ID=cds.MS.gene06905.t1;Parent=MS.gene06905.t1 |
| Gene Sequence |
| Protein sequence |
