Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069224.t1 | XP_013444869.1 | 98.1 | 209 | 4 | 0 | 5 | 213 | 89 | 297 | 4.20E-85 | 324.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069224.t1 | Q9M2D9 | 47.4 | 213 | 87 | 6 | 5 | 213 | 87 | 278 | 3.3e-38 | 159.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069224.t1 | A0A072TN47 | 98.1 | 209 | 4 | 0 | 5 | 213 | 89 | 297 | 3.0e-85 | 324.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene069224.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069224.t1 | MTR_8g031360 | 98.086 | 209 | 4 | 0 | 5 | 213 | 89 | 297 | 2.23e-150 | 419 |
| MS.gene069224.t1 | MTR_7g076740 | 62.264 | 212 | 71 | 6 | 6 | 212 | 89 | 296 | 5.18e-78 | 236 |
| MS.gene069224.t1 | MTR_1g100653 | 38.914 | 221 | 93 | 8 | 6 | 212 | 88 | 280 | 1.21e-36 | 130 |
| MS.gene069224.t1 | MTR_7g011170 | 60.976 | 82 | 31 | 1 | 6 | 87 | 88 | 168 | 1.07e-25 | 101 |
| MS.gene069224.t1 | MTR_4g082290 | 59.770 | 87 | 23 | 3 | 6 | 85 | 88 | 169 | 1.04e-24 | 100 |
| MS.gene069224.t1 | MTR_4g082230 | 59.770 | 87 | 23 | 3 | 6 | 85 | 88 | 169 | 1.10e-24 | 100 |
| MS.gene069224.t1 | MTR_6g012690 | 52.727 | 110 | 38 | 4 | 6 | 111 | 88 | 187 | 1.56e-24 | 99.4 |
| MS.gene069224.t1 | MTR_5g042030 | 54.667 | 75 | 29 | 1 | 6 | 80 | 83 | 152 | 1.43e-19 | 84.7 |
| MS.gene069224.t1 | MTR_4g102380 | 78.571 | 42 | 9 | 0 | 6 | 47 | 88 | 129 | 1.39e-16 | 76.6 |
| MS.gene069224.t1 | MTR_3g077110 | 41.880 | 117 | 49 | 4 | 6 | 107 | 88 | 200 | 1.88e-16 | 77.0 |
| MS.gene069224.t1 | MTR_5g078140 | 73.333 | 45 | 12 | 0 | 6 | 50 | 88 | 132 | 4.47e-16 | 75.5 |
| MS.gene069224.t1 | MTR_4g091490 | 75.610 | 41 | 10 | 0 | 6 | 46 | 89 | 129 | 4.77e-16 | 75.9 |
| MS.gene069224.t1 | MTR_5g007370 | 73.171 | 41 | 11 | 0 | 6 | 46 | 88 | 128 | 6.28e-16 | 75.1 |
| MS.gene069224.t1 | MTR_3g074520 | 73.171 | 41 | 11 | 0 | 6 | 46 | 88 | 128 | 6.57e-16 | 75.5 |
| MS.gene069224.t1 | MTR_1g112760 | 72.093 | 43 | 12 | 0 | 5 | 47 | 88 | 130 | 8.42e-16 | 73.6 |
| MS.gene069224.t1 | MTR_2g011660 | 73.171 | 41 | 11 | 0 | 6 | 46 | 89 | 129 | 1.02e-15 | 74.7 |
| MS.gene069224.t1 | MTR_4g105130 | 65.217 | 46 | 16 | 0 | 6 | 51 | 88 | 133 | 1.68e-15 | 74.3 |
| MS.gene069224.t1 | MTR_4g478180 | 70.732 | 41 | 12 | 0 | 6 | 46 | 89 | 129 | 3.06e-15 | 73.6 |
| MS.gene069224.t1 | MTR_4g073420 | 39.000 | 100 | 56 | 1 | 6 | 105 | 88 | 182 | 4.15e-15 | 72.4 |
| MS.gene069224.t1 | MTR_2g064160 | 65.217 | 46 | 16 | 0 | 6 | 51 | 87 | 132 | 8.23e-15 | 72.0 |
| MS.gene069224.t1 | MTR_3g083540 | 69.048 | 42 | 13 | 0 | 6 | 47 | 117 | 158 | 1.02e-14 | 71.6 |
| MS.gene069224.t1 | MTR_1g085640 | 72.093 | 43 | 12 | 0 | 6 | 48 | 88 | 130 | 1.04e-14 | 72.4 |
| MS.gene069224.t1 | MTR_1g085040 | 72.093 | 43 | 12 | 0 | 6 | 48 | 88 | 130 | 1.20e-14 | 72.0 |
| MS.gene069224.t1 | MTR_2g089620 | 59.259 | 54 | 21 | 1 | 6 | 59 | 88 | 140 | 2.08e-14 | 70.9 |
| MS.gene069224.t1 | MTR_5g029840 | 65.854 | 41 | 14 | 0 | 6 | 46 | 88 | 128 | 3.07e-14 | 70.5 |
| MS.gene069224.t1 | MTR_7g110830 | 69.767 | 43 | 13 | 0 | 6 | 48 | 88 | 130 | 4.00e-14 | 70.5 |
| MS.gene069224.t1 | MTR_6g009430 | 62.791 | 43 | 16 | 0 | 6 | 48 | 88 | 130 | 4.13e-14 | 70.1 |
| MS.gene069224.t1 | MTR_3g461490 | 53.247 | 77 | 26 | 4 | 6 | 82 | 88 | 154 | 7.45e-14 | 69.3 |
| MS.gene069224.t1 | MTR_8g095390 | 61.364 | 44 | 17 | 0 | 6 | 49 | 88 | 131 | 7.63e-14 | 69.3 |
| MS.gene069224.t1 | MTR_3g065440 | 66.667 | 45 | 15 | 0 | 6 | 50 | 88 | 132 | 9.78e-14 | 68.9 |
| MS.gene069224.t1 | MTR_3g045430 | 67.442 | 43 | 14 | 0 | 6 | 48 | 89 | 131 | 1.15e-13 | 68.6 |
| MS.gene069224.t1 | MTR_5g079670 | 65.000 | 40 | 14 | 0 | 6 | 45 | 87 | 126 | 2.94e-13 | 66.2 |
| MS.gene069224.t1 | MTR_3g097450 | 48.387 | 62 | 28 | 1 | 6 | 63 | 88 | 149 | 5.66e-13 | 66.6 |
| MS.gene069224.t1 | MTR_4g485530 | 55.102 | 49 | 19 | 1 | 6 | 54 | 88 | 133 | 1.53e-12 | 63.9 |
| MS.gene069224.t1 | MTR_7g111290 | 69.767 | 43 | 13 | 0 | 6 | 48 | 46 | 88 | 2.00e-11 | 62.4 |
| MS.gene069224.t1 | MTR_5g007310 | 80.645 | 31 | 6 | 0 | 16 | 46 | 6 | 36 | 2.39e-11 | 61.2 |
| MS.gene069224.t1 | MTR_7g111290 | 69.767 | 43 | 13 | 0 | 6 | 48 | 88 | 130 | 3.50e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069224.t1 | AT3G61250 | 50.704 | 213 | 78 | 7 | 6 | 213 | 88 | 278 | 1.48e-57 | 184 |
| MS.gene069224.t1 | AT5G15310 | 56.471 | 85 | 37 | 0 | 5 | 89 | 8 | 92 | 3.96e-28 | 106 |
| MS.gene069224.t1 | AT5G15310 | 57.143 | 84 | 36 | 0 | 6 | 89 | 88 | 171 | 5.11e-27 | 103 |
| MS.gene069224.t1 | AT3G01140 | 56.383 | 94 | 35 | 1 | 6 | 93 | 88 | 181 | 5.40e-27 | 105 |
| MS.gene069224.t1 | AT5G15310 | 57.143 | 84 | 36 | 0 | 6 | 89 | 88 | 171 | 5.67e-27 | 105 |
| MS.gene069224.t1 | AT5G15310 | 57.143 | 84 | 36 | 0 | 6 | 89 | 88 | 171 | 6.31e-27 | 105 |
| MS.gene069224.t1 | AT3G01140 | 56.383 | 94 | 35 | 1 | 6 | 93 | 131 | 224 | 1.36e-26 | 105 |
| MS.gene069224.t1 | AT1G22640 | 36.296 | 135 | 77 | 4 | 5 | 134 | 15 | 145 | 6.71e-17 | 75.9 |
| MS.gene069224.t1 | AT5G10280 | 39.815 | 108 | 40 | 2 | 6 | 92 | 88 | 191 | 1.43e-16 | 77.4 |
| MS.gene069224.t1 | AT5G61420 | 71.111 | 45 | 13 | 0 | 6 | 50 | 9 | 53 | 3.12e-16 | 75.9 |
| MS.gene069224.t1 | AT4G28110 | 70.732 | 41 | 12 | 0 | 6 | 46 | 4 | 44 | 4.78e-16 | 73.6 |
| MS.gene069224.t1 | AT5G65230 | 75.610 | 41 | 10 | 0 | 6 | 46 | 88 | 128 | 5.13e-16 | 75.5 |
| MS.gene069224.t1 | AT5G07700 | 66.000 | 50 | 17 | 0 | 6 | 55 | 88 | 137 | 6.53e-16 | 75.5 |
| MS.gene069224.t1 | AT5G07700 | 66.000 | 50 | 17 | 0 | 6 | 55 | 88 | 137 | 6.53e-16 | 75.5 |
| MS.gene069224.t1 | AT1G22640 | 37.607 | 117 | 66 | 3 | 6 | 119 | 31 | 143 | 6.83e-16 | 73.2 |
| MS.gene069224.t1 | AT4G22680 | 71.429 | 42 | 12 | 0 | 6 | 47 | 88 | 129 | 8.99e-16 | 74.3 |
| MS.gene069224.t1 | AT3G13540 | 69.048 | 42 | 13 | 0 | 6 | 47 | 99 | 140 | 1.53e-15 | 73.2 |
| MS.gene069224.t1 | AT5G61420 | 71.111 | 45 | 13 | 0 | 6 | 50 | 88 | 132 | 1.60e-15 | 74.3 |
| MS.gene069224.t1 | AT4G05100 | 70.732 | 41 | 12 | 0 | 6 | 46 | 89 | 129 | 1.85e-15 | 73.9 |
| MS.gene069224.t1 | AT3G02940 | 73.171 | 41 | 11 | 0 | 6 | 46 | 88 | 128 | 2.19e-15 | 73.6 |
| MS.gene069224.t1 | AT1G22640 | 37.607 | 117 | 66 | 4 | 6 | 119 | 88 | 200 | 2.54e-15 | 72.8 |
| MS.gene069224.t1 | AT4G21440 | 68.293 | 41 | 13 | 0 | 6 | 46 | 88 | 128 | 2.60e-15 | 73.9 |
| MS.gene069224.t1 | AT3G02940 | 73.171 | 41 | 11 | 0 | 6 | 46 | 88 | 128 | 2.94e-15 | 73.6 |
| MS.gene069224.t1 | AT3G02940 | 73.171 | 41 | 11 | 0 | 6 | 46 | 88 | 128 | 2.94e-15 | 73.6 |
| MS.gene069224.t1 | AT5G16770 | 73.171 | 41 | 11 | 0 | 6 | 46 | 88 | 128 | 3.18e-15 | 73.6 |
| MS.gene069224.t1 | AT5G16770 | 73.171 | 41 | 11 | 0 | 6 | 46 | 88 | 128 | 3.18e-15 | 73.6 |
| MS.gene069224.t1 | AT5G16770 | 73.171 | 41 | 11 | 0 | 6 | 46 | 88 | 128 | 4.26e-15 | 73.2 |
| MS.gene069224.t1 | AT5G16770 | 73.171 | 41 | 11 | 0 | 6 | 46 | 88 | 128 | 4.26e-15 | 73.2 |
| MS.gene069224.t1 | AT4G17785 | 70.732 | 41 | 12 | 0 | 6 | 46 | 89 | 129 | 4.29e-15 | 73.2 |
| MS.gene069224.t1 | AT5G16600 | 72.093 | 43 | 12 | 0 | 6 | 48 | 88 | 130 | 4.30e-15 | 73.2 |
| MS.gene069224.t1 | AT4G17785 | 70.732 | 41 | 12 | 0 | 6 | 46 | 89 | 129 | 4.86e-15 | 73.2 |
| MS.gene069224.t1 | AT1G34670 | 73.171 | 41 | 11 | 0 | 6 | 46 | 88 | 128 | 7.71e-15 | 72.4 |
| MS.gene069224.t1 | AT4G12350 | 69.048 | 42 | 13 | 0 | 6 | 47 | 88 | 129 | 8.93e-15 | 71.6 |
| MS.gene069224.t1 | AT5G54230 | 65.306 | 49 | 12 | 1 | 3 | 46 | 80 | 128 | 1.02e-14 | 72.0 |
| MS.gene069224.t1 | AT1G18570 | 68.889 | 45 | 14 | 0 | 6 | 50 | 89 | 133 | 1.23e-14 | 72.0 |
| MS.gene069224.t1 | AT5G62320 | 46.575 | 73 | 28 | 1 | 5 | 66 | 95 | 167 | 1.44e-14 | 70.5 |
| MS.gene069224.t1 | AT1G09540 | 64.583 | 48 | 17 | 0 | 6 | 53 | 88 | 135 | 2.12e-14 | 71.2 |
| MS.gene069224.t1 | AT4G28110 | 68.293 | 41 | 13 | 0 | 6 | 46 | 88 | 128 | 2.62e-14 | 70.5 |
| MS.gene069224.t1 | AT4G09460 | 64.444 | 45 | 16 | 0 | 6 | 50 | 88 | 132 | 3.12e-14 | 69.7 |
| MS.gene069224.t1 | AT4G34990 | 66.667 | 42 | 14 | 0 | 6 | 47 | 88 | 129 | 3.54e-14 | 70.1 |
| MS.gene069224.t1 | AT5G07690 | 69.767 | 43 | 13 | 0 | 6 | 48 | 88 | 130 | 5.20e-14 | 70.1 |
| MS.gene069224.t1 | AT1G57560 | 65.116 | 43 | 15 | 0 | 6 | 48 | 88 | 130 | 6.15e-14 | 69.7 |
| MS.gene069224.t1 | AT4G38620 | 62.222 | 45 | 17 | 0 | 6 | 50 | 88 | 132 | 6.22e-14 | 69.3 |
| MS.gene069224.t1 | AT2G16720 | 50.000 | 58 | 29 | 0 | 6 | 63 | 88 | 145 | 6.62e-14 | 68.9 |
| MS.gene069224.t1 | AT1G57560 | 65.116 | 43 | 15 | 0 | 6 | 48 | 88 | 130 | 8.33e-14 | 68.9 |
| MS.gene069224.t1 | AT1G74430 | 64.444 | 45 | 16 | 0 | 6 | 50 | 19 | 63 | 1.20e-13 | 67.4 |
| MS.gene069224.t1 | AT5G56110 | 67.442 | 43 | 14 | 0 | 6 | 48 | 88 | 130 | 1.29e-13 | 68.9 |
| MS.gene069224.t1 | AT1G35515 | 64.286 | 42 | 15 | 0 | 6 | 47 | 88 | 129 | 3.36e-13 | 66.2 |
| MS.gene069224.t1 | AT5G26660 | 63.636 | 44 | 16 | 0 | 6 | 49 | 57 | 100 | 3.96e-13 | 67.4 |
| MS.gene069224.t1 | AT4G01680 | 72.500 | 40 | 11 | 0 | 6 | 45 | 88 | 127 | 5.57e-13 | 66.2 |
| MS.gene069224.t1 | AT1G74430 | 64.444 | 45 | 16 | 0 | 6 | 50 | 88 | 132 | 5.67e-13 | 66.6 |
| MS.gene069224.t1 | AT5G26660 | 63.636 | 44 | 16 | 0 | 6 | 49 | 88 | 131 | 6.55e-13 | 67.0 |
| MS.gene069224.t1 | AT4G01680 | 72.500 | 40 | 11 | 0 | 6 | 45 | 88 | 127 | 7.95e-13 | 66.6 |
| MS.gene069224.t1 | AT4G01680 | 72.500 | 40 | 11 | 0 | 6 | 45 | 100 | 139 | 8.53e-13 | 66.6 |
| MS.gene069224.t1 | AT5G60890 | 65.217 | 46 | 16 | 0 | 5 | 50 | 87 | 132 | 1.28e-12 | 65.9 |
| MS.gene069224.t1 | AT5G14340 | 59.524 | 42 | 17 | 0 | 6 | 47 | 10 | 51 | 1.40e-11 | 61.2 |
| MS.gene069224.t1 | AT3G28470 | 49.383 | 81 | 29 | 2 | 6 | 74 | 88 | 168 | 2.22e-11 | 62.4 |
| MS.gene069224.t1 | AT3G12720 | 61.538 | 39 | 15 | 0 | 6 | 44 | 98 | 136 | 3.36e-11 | 61.6 |
| MS.gene069224.t1 | AT1G18710 | 64.286 | 42 | 15 | 0 | 6 | 47 | 88 | 129 | 7.47e-11 | 60.5 |
| MS.gene069224.t1 | AT1G74080 | 59.524 | 42 | 17 | 0 | 6 | 47 | 88 | 129 | 7.68e-11 | 60.8 |
Find 36 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACGAATTTGATTTGGAAAT+TGG | 0.082125 | 8.2:+66986099 | None:intergenic |
| CAATAACAACATTCCTTCTT+TGG | 0.206897 | 8.2:-66985992 | MS.gene069224:CDS |
| CTGACTATTTCCTTAAGATA+TGG | 0.244127 | 8.2:-66985951 | MS.gene069224:CDS |
| ACAATGAGATCAAGAATTTA+TGG | 0.255794 | 8.2:-66986203 | MS.gene069224:CDS |
| CACTGCACTGCAACTCTTGT+TGG | 0.308906 | 8.2:-66985677 | MS.gene069224:CDS |
| GGCGATAGACGAATTTGATT+TGG | 0.316330 | 8.2:+66986092 | None:intergenic |
| ATCTCATTGTCAGTTCTTCC+TGG | 0.339461 | 8.2:+66986216 | None:intergenic |
| CTTCAGAGTTCCATATCTTA+AGG | 0.345177 | 8.2:+66985941 | None:intergenic |
| ACGAATTTGATTTGGAAATT+GGG | 0.374944 | 8.2:+66986100 | None:intergenic |
| CACGCGCCACATGGCTCAAT+GGG | 0.396446 | 8.2:-66986070 | MS.gene069224:CDS |
| CCACGCGCCACATGGCTCAA+TGG | 0.417264 | 8.2:-66986071 | MS.gene069224:CDS |
| CTTCTTGAGACATTGAACTT+TGG | 0.418411 | 8.2:+66985854 | None:intergenic |
| AAGCTCATGTCATTGTTAGA+AGG | 0.433035 | 8.2:+66985649 | None:intergenic |
| AACAAATGAAACAATTTCAC+AGG | 0.493206 | 8.2:-66986263 | None:intergenic |
| AAGATATGGAACTCTGAAGT+TGG | 0.497165 | 8.2:-66985937 | MS.gene069224:CDS |
| GCTATTGGTTCATGAGTTTG+TGG | 0.511715 | 8.2:+66986138 | None:intergenic |
| GTCTATCGCCACGCGCCACA+TGG | 0.519701 | 8.2:-66986079 | MS.gene069224:CDS |
| AAAGAAACGTCTCATATGCA+TGG | 0.523969 | 8.2:-66986169 | MS.gene069224:CDS |
| TCAATTGCCTCTCAGCTACC+AGG | 0.524112 | 8.2:-66986234 | MS.gene069224:CDS |
| CACTTTCCCATTGAGCCATG+TGG | 0.525677 | 8.2:+66986064 | None:intergenic |
| CAAAGTTCAATGTCTCAAGA+AGG | 0.548341 | 8.2:-66985853 | MS.gene069224:CDS |
| AACTACAAGTCATTTGATGT+AGG | 0.555746 | 8.2:-66985745 | MS.gene069224:CDS |
| CTCGTCGTCTGATTTGCGAC+CGG | 0.558757 | 8.2:+66985900 | None:intergenic |
| TGTAATAACAACAACAAATG+TGG | 0.560142 | 8.2:-66985823 | MS.gene069224:CDS |
| TACTACAACAAGCAATGTGA+TGG | 0.566980 | 8.2:-66985785 | MS.gene069224:CDS |
| AAGAAACGTCTCATATGCAT+GGG | 0.571800 | 8.2:-66986168 | MS.gene069224:CDS |
| AAGTAATGTGATGAGGCTAT+TGG | 0.582396 | 8.2:+66986123 | None:intergenic |
| CAAGACTTGAAGCAGAAGCA+AGG | 0.585545 | 8.2:-66986041 | MS.gene069224:CDS |
| AAATGAAACAATTTCACAGG+TGG | 0.587041 | 8.2:-66986260 | MS.gene069224:CDS |
| AAAGTTCAATGTCTCAAGAA+GGG | 0.602530 | 8.2:-66985852 | MS.gene069224:CDS |
| CCATTGAGCCATGTGGCGCG+TGG | 0.604740 | 8.2:+66986071 | None:intergenic |
| AATGAAACAATTTCACAGGT+GGG | 0.617428 | 8.2:-66986259 | MS.gene069224:CDS |
| TACAACAAGCAATGTGATGG+AGG | 0.620346 | 8.2:-66985782 | MS.gene069224:CDS |
| AGTTCTTCCTGGTAGCTGAG+AGG | 0.678055 | 8.2:+66986227 | None:intergenic |
| CGGTCGCAAATCAGACGACG+AGG | 0.685981 | 8.2:-66985899 | MS.gene069224:CDS |
| AATTGGGAAGTAATGTGATG+AGG | 0.686160 | 8.2:+66986116 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACAATGAGATCAAGAATTTA+TGG | - | chr8.2:66985694-66985713 | MS.gene069224:CDS | 25.0% |
| ! | TGTAATAACAACAACAAATG+TGG | - | chr8.2:66986074-66986093 | MS.gene069224:CDS | 25.0% |
| !!! | ACGAATTTGATTTGGAAATT+GGG | + | chr8.2:66985800-66985819 | None:intergenic | 25.0% |
| AAAGTTCAATGTCTCAAGAA+GGG | - | chr8.2:66986045-66986064 | MS.gene069224:CDS | 30.0% | |
| AACTACAAGTCATTTGATGT+AGG | - | chr8.2:66986152-66986171 | MS.gene069224:CDS | 30.0% | |
| CAATAACAACATTCCTTCTT+TGG | - | chr8.2:66985905-66985924 | MS.gene069224:CDS | 30.0% | |
| CTGACTATTTCCTTAAGATA+TGG | - | chr8.2:66985946-66985965 | MS.gene069224:CDS | 30.0% | |
| !! | GACGAATTTGATTTGGAAAT+TGG | + | chr8.2:66985801-66985820 | None:intergenic | 30.0% |
| AAAGAAACGTCTCATATGCA+TGG | - | chr8.2:66985728-66985747 | MS.gene069224:CDS | 35.0% | |
| AAGAAACGTCTCATATGCAT+GGG | - | chr8.2:66985729-66985748 | MS.gene069224:CDS | 35.0% | |
| AAGCTCATGTCATTGTTAGA+AGG | + | chr8.2:66986251-66986270 | None:intergenic | 35.0% | |
| AAGTAATGTGATGAGGCTAT+TGG | + | chr8.2:66985777-66985796 | None:intergenic | 35.0% | |
| AATTGGGAAGTAATGTGATG+AGG | + | chr8.2:66985784-66985803 | None:intergenic | 35.0% | |
| CAAAGTTCAATGTCTCAAGA+AGG | - | chr8.2:66986044-66986063 | MS.gene069224:CDS | 35.0% | |
| CTTCAGAGTTCCATATCTTA+AGG | + | chr8.2:66985959-66985978 | None:intergenic | 35.0% | |
| CTTCTTGAGACATTGAACTT+TGG | + | chr8.2:66986046-66986065 | None:intergenic | 35.0% | |
| TACTACAACAAGCAATGTGA+TGG | - | chr8.2:66986112-66986131 | MS.gene069224:CDS | 35.0% | |
| !! | AAGATATGGAACTCTGAAGT+TGG | - | chr8.2:66985960-66985979 | MS.gene069224:CDS | 35.0% |
| !! | ATGTGATGGAGGATTTTGAA+TGG | - | chr8.2:66986126-66986145 | MS.gene069224:CDS | 35.0% |
| ATCTCATTGTCAGTTCTTCC+TGG | + | chr8.2:66985684-66985703 | None:intergenic | 40.0% | |
| GGCGATAGACGAATTTGATT+TGG | + | chr8.2:66985808-66985827 | None:intergenic | 40.0% | |
| TACAACAAGCAATGTGATGG+AGG | - | chr8.2:66986115-66986134 | MS.gene069224:CDS | 40.0% | |
| !! | GCTATTGGTTCATGAGTTTG+TGG | + | chr8.2:66985762-66985781 | None:intergenic | 40.0% |
| !! | GTTTTGTTGCTTGCCAAAGA+AGG | + | chr8.2:66985921-66985940 | None:intergenic | 40.0% |
| CAAGACTTGAAGCAGAAGCA+AGG | - | chr8.2:66985856-66985875 | MS.gene069224:CDS | 45.0% | |
| ! | GTTGGACAATCTTTTCGCAC+CGG | - | chr8.2:66985978-66985997 | MS.gene069224:CDS | 45.0% |
| AGTTCTTCCTGGTAGCTGAG+AGG | + | chr8.2:66985673-66985692 | None:intergenic | 50.0% | |
| CACTGCACTGCAACTCTTGT+TGG | - | chr8.2:66986220-66986239 | MS.gene069224:CDS | 50.0% | |
| CACTTTCCCATTGAGCCATG+TGG | + | chr8.2:66985836-66985855 | None:intergenic | 50.0% | |
| TCAATTGCCTCTCAGCTACC+AGG | - | chr8.2:66985663-66985682 | MS.gene069224:CDS | 50.0% | |
| ! | CTCGTCGTCTGATTTGCGAC+CGG | + | chr8.2:66986000-66986019 | None:intergenic | 55.0% |
| CACGCGCCACATGGCTCAAT+GGG | - | chr8.2:66985827-66985846 | MS.gene069224:CDS | 60.0% | |
| CGGTCGCAAATCAGACGACG+AGG | - | chr8.2:66985998-66986017 | MS.gene069224:CDS | 60.0% | |
| CCACGCGCCACATGGCTCAA+TGG | - | chr8.2:66985826-66985845 | MS.gene069224:CDS | 65.0% | |
| CCATTGAGCCATGTGGCGCG+TGG | + | chr8.2:66985829-66985848 | None:intergenic | 65.0% | |
| GTCTATCGCCACGCGCCACA+TGG | - | chr8.2:66985818-66985837 | MS.gene069224:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 66985639 | 66986280 | 66985639 | ID=MS.gene069224 |
| chr8.2 | mRNA | 66985639 | 66986280 | 66985639 | ID=MS.gene069224.t1;Parent=MS.gene069224 |
| chr8.2 | exon | 66985639 | 66986280 | 66985639 | ID=MS.gene069224.t1.exon1;Parent=MS.gene069224.t1 |
| chr8.2 | CDS | 66985639 | 66986280 | 66985639 | ID=cds.MS.gene069224.t1;Parent=MS.gene069224.t1 |
| Gene Sequence |
| Protein sequence |
