Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069308.t1 | XP_024632961.1 | 83.2 | 579 | 36 | 3 | 37 | 554 | 1 | 579 | 1.60E-270 | 941.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069308.t1 | Q9SZL8 | 24.8 | 464 | 296 | 7 | 71 | 498 | 72 | 518 | 7.5e-40 | 166.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069308.t1 | D3YBB9 | 73.6 | 561 | 106 | 2 | 32 | 554 | 47 | 603 | 7.8e-232 | 812.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene069308.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069308.t1 | MTR_0558s0020 | 93.581 | 296 | 19 | 0 | 37 | 332 | 1 | 296 | 0.0 | 581 |
| MS.gene069308.t1 | MTR_1g083640 | 89.860 | 286 | 14 | 1 | 37 | 307 | 1 | 286 | 0.0 | 532 |
| MS.gene069308.t1 | MTR_8g446020 | 80.405 | 296 | 18 | 2 | 37 | 332 | 1 | 256 | 8.97e-166 | 473 |
| MS.gene069308.t1 | MTR_6g090505 | 90.295 | 237 | 23 | 0 | 102 | 338 | 1 | 237 | 1.40e-153 | 446 |
| MS.gene069308.t1 | MTR_6g090505 | 71.000 | 100 | 6 | 2 | 395 | 494 | 230 | 306 | 1.08e-35 | 138 |
| MS.gene069308.t1 | MTR_2g014100 | 87.755 | 245 | 22 | 1 | 37 | 273 | 1 | 245 | 8.27e-153 | 439 |
| MS.gene069308.t1 | MTR_0337s0040 | 78.927 | 261 | 16 | 1 | 37 | 297 | 1 | 222 | 4.85e-141 | 408 |
| MS.gene069308.t1 | MTR_3g008240 | 91.626 | 203 | 17 | 0 | 37 | 239 | 1 | 203 | 9.40e-134 | 389 |
| MS.gene069308.t1 | MTR_4g040430 | 90.640 | 203 | 14 | 2 | 37 | 239 | 1 | 198 | 9.84e-128 | 373 |
| MS.gene069308.t1 | MTR_5g071590 | 83.978 | 181 | 17 | 1 | 37 | 205 | 1 | 181 | 3.47e-105 | 315 |
| MS.gene069308.t1 | MTR_0019s0290 | 88.816 | 152 | 17 | 0 | 119 | 270 | 9 | 160 | 7.36e-95 | 288 |
| MS.gene069308.t1 | MTR_1g055240 | 93.706 | 143 | 9 | 0 | 127 | 269 | 2 | 144 | 5.81e-94 | 285 |
| MS.gene069308.t1 | MTR_1281s0010 | 92.661 | 109 | 8 | 0 | 56 | 164 | 1 | 109 | 1.06e-66 | 213 |
| MS.gene069308.t1 | MTR_0337s0060 | 80.315 | 127 | 20 | 1 | 424 | 550 | 4 | 125 | 3.25e-63 | 208 |
| MS.gene069308.t1 | MTR_4g008820 | 90.323 | 93 | 9 | 0 | 24 | 116 | 112 | 204 | 4.52e-47 | 176 |
| MS.gene069308.t1 | MTR_8g046060 | 84.091 | 88 | 6 | 2 | 37 | 116 | 91 | 178 | 2.03e-36 | 135 |
| MS.gene069308.t1 | MTR_6g051425 | 30.154 | 325 | 182 | 8 | 77 | 378 | 22 | 324 | 5.49e-36 | 138 |
| MS.gene069308.t1 | MTR_1g070355 | 24.370 | 357 | 248 | 6 | 38 | 391 | 38 | 375 | 3.67e-20 | 94.7 |
| MS.gene069308.t1 | MTR_0337s0050 | 80.556 | 36 | 7 | 0 | 296 | 331 | 14 | 49 | 7.76e-13 | 64.7 |
| MS.gene069308.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 86 | 270 | 40 | 205 | 1.11e-12 | 70.9 |
| MS.gene069308.t1 | MTR_1g013060 | 27.854 | 219 | 139 | 6 | 77 | 293 | 29 | 230 | 1.36e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069308.t1 | AT4G38180 | 25.690 | 471 | 283 | 11 | 71 | 498 | 72 | 518 | 1.83e-42 | 164 |
| MS.gene069308.t1 | AT3G06250 | 22.622 | 473 | 268 | 9 | 60 | 497 | 178 | 587 | 4.57e-28 | 120 |
| MS.gene069308.t1 | AT3G06250 | 22.622 | 473 | 268 | 9 | 60 | 497 | 178 | 587 | 4.57e-28 | 120 |
| MS.gene069308.t1 | AT3G06250 | 22.622 | 473 | 268 | 9 | 60 | 497 | 178 | 587 | 4.57e-28 | 120 |
| MS.gene069308.t1 | AT4G15090 | 23.542 | 463 | 285 | 9 | 87 | 506 | 66 | 502 | 1.12e-27 | 119 |
| MS.gene069308.t1 | AT4G15090 | 23.542 | 463 | 285 | 9 | 87 | 506 | 66 | 502 | 1.12e-27 | 119 |
| MS.gene069308.t1 | AT4G15090 | 23.542 | 463 | 285 | 9 | 87 | 506 | 66 | 502 | 1.12e-27 | 119 |
| MS.gene069308.t1 | AT4G15090 | 23.542 | 463 | 285 | 9 | 87 | 506 | 66 | 502 | 1.12e-27 | 119 |
| MS.gene069308.t1 | AT4G15090 | 23.542 | 463 | 285 | 9 | 87 | 506 | 66 | 502 | 1.12e-27 | 119 |
| MS.gene069308.t1 | AT5G28530 | 26.994 | 326 | 208 | 7 | 77 | 390 | 60 | 367 | 2.97e-27 | 117 |
| MS.gene069308.t1 | AT5G28530 | 26.994 | 326 | 208 | 7 | 77 | 390 | 60 | 367 | 3.07e-27 | 117 |
| MS.gene069308.t1 | AT5G28530 | 26.994 | 326 | 208 | 7 | 77 | 390 | 60 | 367 | 3.07e-27 | 117 |
| MS.gene069308.t1 | AT3G22170 | 22.222 | 558 | 356 | 13 | 6 | 522 | 6 | 526 | 1.02e-26 | 116 |
| MS.gene069308.t1 | AT3G22170 | 22.222 | 558 | 356 | 13 | 6 | 522 | 6 | 526 | 1.02e-26 | 116 |
| MS.gene069308.t1 | AT4G38170 | 23.630 | 292 | 173 | 5 | 272 | 522 | 24 | 306 | 5.49e-26 | 112 |
| MS.gene069308.t1 | AT1G10240 | 22.267 | 494 | 317 | 11 | 86 | 535 | 62 | 532 | 2.29e-25 | 111 |
| MS.gene069308.t1 | AT1G10240 | 22.267 | 494 | 317 | 11 | 86 | 535 | 62 | 532 | 2.29e-25 | 111 |
| MS.gene069308.t1 | AT1G76320 | 23.276 | 464 | 276 | 13 | 76 | 495 | 1 | 428 | 7.41e-25 | 109 |
| MS.gene069308.t1 | AT1G76320 | 23.276 | 464 | 276 | 13 | 76 | 495 | 1 | 428 | 1.08e-24 | 109 |
| MS.gene069308.t1 | AT1G76320 | 23.276 | 464 | 276 | 13 | 76 | 495 | 1 | 428 | 1.08e-24 | 109 |
| MS.gene069308.t1 | AT1G76320 | 23.276 | 464 | 276 | 13 | 76 | 495 | 1 | 428 | 1.12e-24 | 109 |
| MS.gene069308.t1 | AT1G80010 | 26.513 | 347 | 184 | 12 | 75 | 394 | 98 | 400 | 9.87e-24 | 106 |
| MS.gene069308.t1 | AT1G52520 | 21.336 | 539 | 335 | 15 | 75 | 560 | 88 | 590 | 6.52e-23 | 103 |
| MS.gene069308.t1 | AT5G18960 | 21.967 | 478 | 272 | 12 | 58 | 497 | 197 | 611 | 9.86e-22 | 100 |
| MS.gene069308.t1 | AT5G18960 | 21.967 | 478 | 272 | 12 | 58 | 497 | 197 | 611 | 9.86e-22 | 100 |
| MS.gene069308.t1 | AT2G32250 | 25.061 | 407 | 233 | 12 | 40 | 443 | 8 | 345 | 1.45e-21 | 99.8 |
| MS.gene069308.t1 | AT2G32250 | 25.061 | 407 | 233 | 12 | 40 | 443 | 8 | 345 | 1.46e-21 | 99.8 |
| MS.gene069308.t1 | AT2G32250 | 25.061 | 407 | 233 | 12 | 40 | 443 | 8 | 345 | 1.46e-21 | 99.8 |
| MS.gene069308.t1 | AT2G32250 | 25.061 | 407 | 233 | 12 | 40 | 443 | 8 | 345 | 1.63e-21 | 99.8 |
| MS.gene069308.t1 | AT2G32250 | 25.061 | 407 | 233 | 12 | 40 | 443 | 8 | 345 | 1.63e-21 | 99.8 |
| MS.gene069308.t1 | AT2G32250 | 25.061 | 407 | 233 | 12 | 40 | 443 | 8 | 345 | 1.63e-21 | 99.8 |
| MS.gene069308.t1 | AT2G27110 | 28.230 | 209 | 134 | 3 | 188 | 394 | 131 | 325 | 2.15e-21 | 99.4 |
| MS.gene069308.t1 | AT2G27110 | 28.230 | 209 | 134 | 3 | 188 | 394 | 131 | 325 | 2.15e-21 | 99.4 |
| MS.gene069308.t1 | AT2G27110 | 31.034 | 145 | 100 | 0 | 250 | 394 | 36 | 180 | 2.83e-21 | 99.0 |
| MS.gene069308.t1 | AT2G32250 | 25.745 | 369 | 204 | 11 | 78 | 443 | 3 | 304 | 3.11e-21 | 99.0 |
| MS.gene069308.t1 | AT2G32250 | 25.745 | 369 | 204 | 11 | 78 | 443 | 3 | 304 | 3.57e-21 | 98.6 |
| MS.gene069308.t1 | AT4G19990 | 22.422 | 446 | 259 | 11 | 78 | 482 | 27 | 426 | 1.91e-19 | 93.2 |
| MS.gene069308.t1 | AT4G19990 | 22.422 | 446 | 259 | 11 | 78 | 482 | 41 | 440 | 2.16e-19 | 92.8 |
| MS.gene069308.t1 | AT4G19990 | 22.422 | 446 | 259 | 11 | 78 | 482 | 27 | 426 | 2.18e-19 | 92.8 |
| MS.gene069308.t1 | AT4G19990 | 22.422 | 446 | 259 | 11 | 78 | 482 | 27 | 426 | 2.18e-19 | 92.8 |
| MS.gene069308.t1 | AT4G19990 | 22.422 | 446 | 259 | 11 | 78 | 482 | 27 | 426 | 2.32e-19 | 92.8 |
| MS.gene069308.t1 | AT4G19990 | 22.422 | 446 | 259 | 11 | 78 | 482 | 27 | 426 | 2.32e-19 | 92.8 |
| MS.gene069308.t1 | AT4G19990 | 26.119 | 268 | 153 | 5 | 256 | 482 | 106 | 369 | 3.13e-19 | 92.4 |
Find 85 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3.3:+8508068 | MS.gene069308:CDS |
| TATCGTCTGTGGTTTCTTAT+TGG | 0.203510 | 3.3:-8507648 | None:intergenic |
| TACATTTCAGCTGCCTTTAT+TGG | 0.203801 | 3.3:+8507521 | MS.gene069308:intron |
| AGGTGGCTTGTCCAAACTTA+TGG | 0.226903 | 3.3:+8507913 | MS.gene069308:CDS |
| GCATAAGATTTCCATAAGTT+TGG | 0.282382 | 3.3:-8507924 | None:intergenic |
| TCTGATGTTGGCCTGTTGTT+AGG | 0.302249 | 3.3:-8506340 | None:intergenic |
| CGATCATGATCTTCAAAACT+TGG | 0.305714 | 3.3:-8508414 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 3.3:+8507842 | MS.gene069308:CDS |
| ACAAAATAAGAAATCAAATA+AGG | 0.334199 | 3.3:+8506258 | MS.gene069308:CDS |
| ATGATTGTCAAAACCAATAA+AGG | 0.364908 | 3.3:-8507534 | None:intergenic |
| GAAGGCCTACTTCAGACTTT+AGG | 0.375686 | 3.3:+8507893 | MS.gene069308:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.376102 | 3.3:+8507942 | MS.gene069308:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 3.3:+8506606 | MS.gene069308:CDS |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3.3:+8508242 | MS.gene069308:CDS |
| TCATGCTGAGTTGGACTTCA+AGG | 0.402098 | 3.3:+8508110 | MS.gene069308:CDS |
| TCCGATATTGATTGTTTGTT+CGG | 0.406345 | 3.3:-8506897 | None:intergenic |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 3.3:+8508490 | MS.gene069308:CDS |
| TTATGCATTGGTCTTCAGCT+TGG | 0.417102 | 3.3:+8507941 | MS.gene069308:CDS |
| AACAATCAATATCGGACATT+AGG | 0.418137 | 3.3:+8506904 | MS.gene069308:CDS |
| GATCTTCAAAACTTGGGAAA+AGG | 0.421455 | 3.3:-8508407 | None:intergenic |
| ACCGAACAAACAATCAATAT+CGG | 0.423267 | 3.3:+8506896 | MS.gene069308:CDS |
| ATGTCTATAAGATATATAGA+TGG | 0.423693 | 3.3:+8506461 | MS.gene069308:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 3.3:+8506619 | MS.gene069308:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3.3:+8506544 | MS.gene069308:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3.3:+8506409 | MS.gene069308:CDS |
| AACCGCATCAGTTGACTGTT+GGG | 0.451336 | 3.3:-8508162 | None:intergenic |
| ATATTGATTGTTTGTTCGGT+AGG | 0.452465 | 3.3:-8506893 | None:intergenic |
| CTTGCTTTGCATTTATTCAC+AGG | 0.460988 | 3.3:+8508208 | MS.gene069308:CDS |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 3.3:+8506607 | MS.gene069308:CDS |
| GTCTGCTTAATCCTAACAAC+AGG | 0.466827 | 3.3:+8506329 | MS.gene069308:CDS |
| TCTAATGACGATTCGTCAAA+AGG | 0.472809 | 3.3:+8506687 | MS.gene069308:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 3.3:-8506658 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3.3:-8508244 | None:intergenic |
| TTACTTCTCGAAATGATCTC+AGG | 0.488412 | 3.3:-8506531 | None:intergenic |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3.3:+8508258 | MS.gene069308:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 3.3:+8507843 | MS.gene069308:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3.3:+8508082 | MS.gene069308:CDS |
| CTCAGGTAACACAAATGCTC+TGG | 0.496027 | 3.3:-8506514 | None:intergenic |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 3.3:-8506792 | None:intergenic |
| ATCACATCGGAGCGCGAGCA+AGG | 0.504097 | 3.3:-8505659 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 3.3:-8506403 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3.3:+8508101 | MS.gene069308:CDS |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 3.3:+8506303 | MS.gene069308:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.514358 | 3.3:-8506502 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 3.3:-8508050 | None:intergenic |
| GAACCGCATCAGTTGACTGT+TGG | 0.521951 | 3.3:-8508163 | None:intergenic |
| TCATGATCGACTTGATGAAA+GGG | 0.522852 | 3.3:+8508428 | MS.gene069308:CDS |
| CTTATGGAAATCTTATGCAT+TGG | 0.523473 | 3.3:+8507929 | MS.gene069308:CDS |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 3.3:+8506196 | MS.gene069308:CDS |
| TGTCTATAAGATATATAGAT+GGG | 0.523615 | 3.3:+8506462 | MS.gene069308:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3.3:-8508239 | None:intergenic |
| ATCATGATCGACTTGATGAA+AGG | 0.531340 | 3.3:+8508427 | MS.gene069308:CDS |
| TTCACAAACTCAATAACCAC+TGG | 0.531770 | 3.3:-8506367 | None:intergenic |
| AATTCAACAACGCACTAGCC+TGG | 0.534735 | 3.3:-8507679 | None:intergenic |
| GGCCTACTTCAGACTTTAGG+TGG | 0.536366 | 3.3:+8507896 | MS.gene069308:CDS |
| AAATGCAGTACGAATGTCGC+TGG | 0.539104 | 3.3:-8505686 | None:intergenic |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3.3:-8508045 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3.3:+8508259 | MS.gene069308:CDS |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 3.3:+8506304 | MS.gene069308:CDS |
| CGTCAAAAGGAGATGGTGGT+TGG | 0.556443 | 3.3:+8506700 | MS.gene069308:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 3.3:+8508491 | MS.gene069308:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.567659 | 3.3:+8506468 | MS.gene069308:CDS |
| TGAAATTCGTGCAACCTCGC+CGG | 0.571032 | 3.3:-8505635 | None:intergenic |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 3.3:+8506622 | MS.gene069308:CDS |
| GATCATGATCTTCAAAACTT+GGG | 0.579469 | 3.3:-8508413 | None:intergenic |
| TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 3.3:+8506613 | MS.gene069308:CDS |
| TGTTATGTTTGTAACAAACA+AGG | 0.584617 | 3.3:+8506292 | MS.gene069308:CDS |
| GACGATTCGTCAAAAGGAGA+TGG | 0.586508 | 3.3:+8506693 | MS.gene069308:CDS |
| ACCACTGGACTGTCTGATGT+TGG | 0.589854 | 3.3:-8506352 | None:intergenic |
| TGAATAAATGCAAAGCAAGC+TGG | 0.591761 | 3.3:-8508204 | None:intergenic |
| TGATTGCGACATGATTTCAC+CGG | 0.603179 | 3.3:+8505616 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3.3:+8508245 | MS.gene069308:CDS |
| TCACATCGGAGCGCGAGCAA+GGG | 0.626724 | 3.3:-8505658 | None:intergenic |
| AGCCACCTAAAGTCTGAAGT+AGG | 0.626906 | 3.3:-8507898 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.637387 | 3.3:+8506627 | MS.gene069308:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3.3:+8508083 | MS.gene069308:CDS |
| GATTCGTCAAAAGGAGATGG+TGG | 0.644417 | 3.3:+8506696 | MS.gene069308:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.645542 | 3.3:+8506049 | MS.gene069308:CDS |
| TGGTCTGTATATATCGTCTG+TGG | 0.648431 | 3.3:-8507659 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 3.3:+8508492 | MS.gene069308:CDS |
| ATCCCAACAGTCAACTGATG+CGG | 0.661071 | 3.3:+8508160 | MS.gene069308:CDS |
| GCGACATGATTTCACCGGCG+AGG | 0.683680 | 3.3:+8505621 | None:intergenic |
| ACAGACGATATATACAGACC+AGG | 0.696353 | 3.3:+8507661 | MS.gene069308:CDS |
| GCCAACATCAGACAGTCCAG+TGG | 0.711751 | 3.3:+8506351 | MS.gene069308:CDS |
| TGTCGCTGGAGAAATCACAT+CGG | 0.764902 | 3.3:-8505672 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATGTAAGTTATATAT+AGG | + | chr3.3:8507471-8507490 | MS.gene069308:intron | 10.0% |
| !! | ACAAAATAAGAAATCAAATA+AGG | + | chr3.3:8506258-8506277 | MS.gene069308:CDS | 15.0% |
| !!! | ATATGATTTTTGTTGTATTT+AGG | + | chr3.3:8505726-8505745 | MS.gene069308:intron | 15.0% |
| !!! | ATGATGAAAAATTGTTTTAA+TGG | + | chr3.3:8507871-8507890 | MS.gene069308:CDS | 15.0% |
| !! | ATGTCTATAAGATATATAGA+TGG | + | chr3.3:8506461-8506480 | MS.gene069308:CDS | 20.0% |
| !! | TGTCTATAAGATATATAGAT+GGG | + | chr3.3:8506462-8506481 | MS.gene069308:CDS | 20.0% |
| !! | TTTCTATGAGTTAACTAATT+TGG | + | chr3.3:8507801-8507820 | MS.gene069308:intron | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr3.3:8506175-8506194 | MS.gene069308:CDS | 20.0% |
| !!! | TACAACTCAAAATTTTGAAA+TGG | - | chr3.3:8505933-8505952 | None:intergenic | 20.0% |
| !!! | TCAATTCAGAATATTTTTCT+AGG | + | chr3.3:8507701-8507720 | MS.gene069308:CDS | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | + | chr3.3:8507875-8507894 | MS.gene069308:CDS | 20.0% |
| !!! | TTAGGTTTTGATTCAAATTT+CGG | + | chr3.3:8505744-8505763 | MS.gene069308:intron | 20.0% |
| ! | ACATAAATGCATTCTAATTG+AGG | + | chr3.3:8507413-8507432 | MS.gene069308:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr3.3:8507537-8507556 | None:intergenic | 25.0% |
| ! | ATTTATGTTTAAGAGATCAG+TGG | + | chr3.3:8507113-8507132 | MS.gene069308:intron | 25.0% |
| ! | CATAAATGCATTCTAATTGA+GGG | + | chr3.3:8507414-8507433 | MS.gene069308:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr3.3:8508242-8508261 | None:intergenic | 25.0% |
| ! | CTCTTAAACATAAATGCATT+TGG | - | chr3.3:8507108-8507127 | None:intergenic | 25.0% |
| ! | CTTCAATTTATGATACCTAA+CGG | + | chr3.3:8505982-8506001 | MS.gene069308:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr3.3:8508068-8508087 | MS.gene069308:CDS | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | - | chr3.3:8506775-8506794 | None:intergenic | 25.0% |
| ! | TGTAGCAATTGAATATGTAA+AGG | + | chr3.3:8505949-8505968 | MS.gene069308:intron | 25.0% |
| ! | TGTTATGTTTGTAACAAACA+AGG | + | chr3.3:8506292-8506311 | MS.gene069308:CDS | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr3.3:8508242-8508261 | MS.gene069308:CDS | 25.0% |
| ! | TTTATGTTTAAGAGATCAGT+GGG | + | chr3.3:8507114-8507133 | MS.gene069308:intron | 25.0% |
| !! | AACTTTGAAAAACTTGTTCA+AGG | - | chr3.3:8508289-8508308 | None:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr3.3:8506209-8506228 | MS.gene069308:CDS | 25.0% |
| !! | ATTTTTCTAGGTGTTTTTCA+TGG | + | chr3.3:8507713-8507732 | MS.gene069308:intron | 25.0% |
| !! | CATTATGTTGTATTTTGTTC+TGG | + | chr3.3:8506972-8506991 | MS.gene069308:intron | 25.0% |
| !! | GATAAGGATCAATTTTTCTT+CGG | + | chr3.3:8505868-8505887 | MS.gene069308:intron | 25.0% |
| !! | GTTGTATTTTGTTCTGATTT+GGG | + | chr3.3:8507493-8507512 | MS.gene069308:intron | 25.0% |
| !! | TAGTATTTTGTACTTCTCTT+AGG | + | chr3.3:8506928-8506947 | MS.gene069308:intron | 25.0% |
| !! | TTTTTCTAGGTGTTTTTCAT+GGG | + | chr3.3:8507714-8507733 | MS.gene069308:intron | 25.0% |
| !!! | GCTGTAATAAATTTTAAAGC+TGG | + | chr3.3:8506574-8506593 | MS.gene069308:CDS | 25.0% |
| !!! | TCAAATTTCGGATTTGTTAA+TGG | + | chr3.3:8505756-8505775 | MS.gene069308:intron | 25.0% |
| !!! | TCCATGATTCTTTTTTACTA+GGG | - | chr3.3:8506132-8506151 | None:intergenic | 25.0% |
| !!! | TTCCATGATTCTTTTTTACT+AGG | - | chr3.3:8506133-8506152 | None:intergenic | 25.0% |
| AACAAACAAGGTTTCAAGAA+GGG | + | chr3.3:8506304-8506323 | MS.gene069308:CDS | 30.0% | |
| AACAATCAATATCGGACATT+AGG | + | chr3.3:8506904-8506923 | MS.gene069308:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr3.3:8507842-8507861 | MS.gene069308:CDS | 30.0% | |
| ACCGAACAAACAATCAATAT+CGG | + | chr3.3:8506896-8506915 | MS.gene069308:CDS | 30.0% | |
| AGAACGTCTTATGAAGTTAT+GGG | + | chr3.3:8506607-8506626 | MS.gene069308:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr3.3:8507843-8507862 | MS.gene069308:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr3.3:8508247-8508266 | None:intergenic | 30.0% | |
| CTTATGGAAATCTTATGCAT+TGG | + | chr3.3:8507929-8507948 | MS.gene069308:CDS | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr3.3:8508245-8508264 | MS.gene069308:CDS | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr3.3:8507758-8507777 | MS.gene069308:intron | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | - | chr3.3:8508416-8508435 | None:intergenic | 30.0% | |
| GCATAAGATTTCCATAAGTT+TGG | - | chr3.3:8507927-8507946 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr3.3:8506196-8506215 | MS.gene069308:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr3.3:8508053-8508072 | None:intergenic | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | + | chr3.3:8506303-8506322 | MS.gene069308:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr3.3:8506468-8506487 | MS.gene069308:CDS | 30.0% | |
| TCAATTGTAGCAATTGGATA+AGG | + | chr3.3:8505852-8505871 | MS.gene069308:intron | 30.0% | |
| TGTAAGATTGATAAAGTTGC+AGG | + | chr3.3:8507146-8507165 | MS.gene069308:intron | 30.0% | |
| TTAGCTTCAATTGTAGCAAT+TGG | + | chr3.3:8505846-8505865 | MS.gene069308:intron | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | chr3.3:8506661-8506680 | None:intergenic | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr3.3:8506505-8506524 | None:intergenic | 30.0% |
| ! | ATATTGATTGTTTGTTCGGT+AGG | - | chr3.3:8506896-8506915 | None:intergenic | 30.0% |
| ! | ATGCTGATAATGATAATGAC+GGG | + | chr3.3:8508343-8508362 | MS.gene069308:intron | 30.0% |
| ! | GATGCTGATAATGATAATGA+CGG | + | chr3.3:8508342-8508361 | MS.gene069308:intron | 30.0% |
| ! | GGTTGTATTTTGTTCTGATT+TGG | + | chr3.3:8507492-8507511 | MS.gene069308:intron | 30.0% |
| ! | GTTAAGTTACATTTTACAGC+TGG | + | chr3.3:8507964-8507983 | MS.gene069308:CDS | 30.0% |
| ! | TCCGATATTGATTGTTTGTT+CGG | - | chr3.3:8506900-8506919 | None:intergenic | 30.0% |
| !! | AAAGAGCATTCTTATGATCA+AGG | - | chr3.3:8507190-8507209 | None:intergenic | 30.0% |
| !!! | AAGACATAGCTAGCATTTTT+TGG | + | chr3.3:8506809-8506828 | MS.gene069308:CDS | 30.0% |
| !!! | AGACATAGCTAGCATTTTTT+GGG | + | chr3.3:8506810-8506829 | MS.gene069308:CDS | 30.0% |
| !!! | CCATGATTCTTTTTTACTAG+GGG | - | chr3.3:8506131-8506150 | None:intergenic | 30.0% |
| AAAAATGCACTGTTTGCATG+AGG | - | chr3.3:8507784-8507803 | None:intergenic | 35.0% | |
| AATGCATTCTAATTGAGGGT+TGG | + | chr3.3:8507418-8507437 | MS.gene069308:intron | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr3.3:8508082-8508101 | MS.gene069308:CDS | 35.0% | |
| ACTAAGAACAAAGAACCGTT+AGG | - | chr3.3:8506000-8506019 | None:intergenic | 35.0% | |
| ATATCAACTTCATCTGAGAG+TGG | + | chr3.3:8506049-8506068 | MS.gene069308:CDS | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | + | chr3.3:8508491-8508510 | MS.gene069308:CDS | 35.0% | |
| CAAGATGTATCCTTGCTTAA+TGG | - | chr3.3:8507222-8507241 | None:intergenic | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr3.3:8508083-8508102 | MS.gene069308:CDS | 35.0% | |
| CCCCTAGTAAAAAAGAATCA+TGG | + | chr3.3:8506128-8506147 | MS.gene069308:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr3.3:8506544-8506563 | MS.gene069308:CDS | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | - | chr3.3:8508417-8508436 | None:intergenic | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | chr3.3:8508208-8508227 | MS.gene069308:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr3.3:8506393-8506412 | MS.gene069308:CDS | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr3.3:8506387-8506406 | MS.gene069308:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | chr3.3:8506606-8506625 | MS.gene069308:CDS | 35.0% | |
| GATCTCTTAAACTACAGACT+CGG | - | chr3.3:8507064-8507083 | None:intergenic | 35.0% | |
| GATCTTCAAAACTTGGGAAA+AGG | - | chr3.3:8508410-8508429 | None:intergenic | 35.0% | |
| GGATACATCTTGTATTGAAC+AGG | + | chr3.3:8507230-8507249 | MS.gene069308:intron | 35.0% | |
| TACATTTCAGCTGCCTTTAT+TGG | + | chr3.3:8507521-8507540 | MS.gene069308:intron | 35.0% | |
| TACTTAGCAACCATTAAGCA+AGG | + | chr3.3:8507209-8507228 | MS.gene069308:intron | 35.0% | |
| TATCGTCTGTGGTTTCTTAT+TGG | - | chr3.3:8507651-8507670 | None:intergenic | 35.0% | |
| TCCAAAACATCAACATTGGA+AGG | - | chr3.3:8508369-8508388 | None:intergenic | 35.0% | |
| TCTAATGACGATTCGTCAAA+AGG | + | chr3.3:8506687-8506706 | MS.gene069308:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | + | chr3.3:8506613-8506632 | MS.gene069308:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr3.3:8506392-8506411 | MS.gene069308:CDS | 35.0% | |
| TGAATAAATGCAAAGCAAGC+TGG | - | chr3.3:8508207-8508226 | None:intergenic | 35.0% | |
| TGCATCCAAAACATCAACAT+TGG | - | chr3.3:8508373-8508392 | None:intergenic | 35.0% | |
| TTACTTCTCGAAATGATCTC+AGG | - | chr3.3:8506534-8506553 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCAC+TGG | - | chr3.3:8506370-8506389 | None:intergenic | 35.0% | |
| ! | GTTAATGGTTTTCTGCTCTT+AGG | + | chr3.3:8505771-8505790 | MS.gene069308:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr3.3:8508012-8508031 | MS.gene069308:CDS | 35.0% |
| ! | TGTTGTATTTTGTTCTGGCA+TGG | + | chr3.3:8506977-8506996 | MS.gene069308:intron | 35.0% |
| !! | ATCATGATCGACTTGATGAA+AGG | + | chr3.3:8508427-8508446 | MS.gene069308:CDS | 35.0% |
| !! | ATTCGTACTGCATTTTGAAG+AGG | + | chr3.3:8505694-8505713 | MS.gene069308:CDS | 35.0% |
| !! | TCATGATCGACTTGATGAAA+GGG | + | chr3.3:8508428-8508447 | MS.gene069308:CDS | 35.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr3.3:8506021-8506040 | MS.gene069308:intron | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr3.3:8508048-8508067 | None:intergenic | 40.0% | |
| ACAGACGATATATACAGACC+AGG | + | chr3.3:8507661-8507680 | MS.gene069308:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr3.3:8508259-8508278 | MS.gene069308:CDS | 40.0% | |
| ATTGAGTTTACTCACTGCTG+AGG | + | chr3.3:8507338-8507357 | MS.gene069308:intron | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | + | chr3.3:8508490-8508509 | MS.gene069308:CDS | 40.0% | |
| GAGCATTCTTATGATCAAGG+CGG | - | chr3.3:8507187-8507206 | None:intergenic | 40.0% | |
| GTACTAAAGATCGATCACAC+AGG | - | chr3.3:8507269-8507288 | None:intergenic | 40.0% | |
| GTCTGCTTAATCCTAACAAC+AGG | + | chr3.3:8506329-8506348 | MS.gene069308:CDS | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr3.3:8508258-8508277 | MS.gene069308:CDS | 40.0% | |
| TGGTCTGTATATATCGTCTG+TGG | - | chr3.3:8507662-8507681 | None:intergenic | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | + | chr3.3:8508492-8508511 | MS.gene069308:CDS | 40.0% | |
| TGTTCTGGCATGGATAGTAT+AGG | + | chr3.3:8506987-8507006 | MS.gene069308:intron | 40.0% | |
| ! | GCCTTCCAATGTTGATGTTT+TGG | + | chr3.3:8508365-8508384 | MS.gene069308:intron | 40.0% |
| ! | TTTTGAACTGCCTAGTGTGT+AGG | + | chr3.3:8507020-8507039 | MS.gene069308:intron | 40.0% |
| ! | TTTTTCATGGGCTTTGCTCA+TGG | + | chr3.3:8507726-8507745 | MS.gene069308:intron | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr3.3:8507942-8507961 | MS.gene069308:CDS | 40.0% |
| !! | TTATGCATTGGTCTTCAGCT+TGG | + | chr3.3:8507941-8507960 | MS.gene069308:CDS | 40.0% |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | chr3.3:8507597-8507616 | MS.gene069308:CDS | 40.0% |
| !!! | CTAGCATTTTTTGGGCAGAT+GGG | + | chr3.3:8506818-8506837 | MS.gene069308:CDS | 40.0% |
| AAATGCAGTACGAATGTCGC+TGG | - | chr3.3:8505689-8505708 | None:intergenic | 45.0% | |
| AACCGCATCAGTTGACTGTT+GGG | - | chr3.3:8508165-8508184 | None:intergenic | 45.0% | |
| AATTCAACAACGCACTAGCC+TGG | - | chr3.3:8507682-8507701 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAACTGATG+CGG | + | chr3.3:8508160-8508179 | MS.gene069308:CDS | 45.0% | |
| CGATCACACAGGACAATTTC+TGG | - | chr3.3:8507258-8507277 | None:intergenic | 45.0% | |
| CTCAGGTAACACAAATGCTC+TGG | - | chr3.3:8506517-8506536 | None:intergenic | 45.0% | |
| CTGGCATGGATAGTATAGGT+AGG | + | chr3.3:8506991-8507010 | MS.gene069308:intron | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr3.3:8506397-8506416 | MS.gene069308:CDS | 45.0% | |
| GAAGGCCTACTTCAGACTTT+AGG | + | chr3.3:8507893-8507912 | MS.gene069308:CDS | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | + | chr3.3:8506619-8506638 | MS.gene069308:CDS | 45.0% | |
| GACGATTCGTCAAAAGGAGA+TGG | + | chr3.3:8506693-8506712 | MS.gene069308:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr3.3:8508101-8508120 | MS.gene069308:CDS | 45.0% | |
| GATTCGTCAAAAGGAGATGG+TGG | + | chr3.3:8506696-8506715 | MS.gene069308:CDS | 45.0% | |
| TGTCGCTGGAGAAATCACAT+CGG | - | chr3.3:8505675-8505694 | None:intergenic | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr3.3:8506795-8506814 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr3.3:8506406-8506425 | None:intergenic | 45.0% | |
| ! | AGCCACCTAAAGTCTGAAGT+AGG | - | chr3.3:8507901-8507920 | None:intergenic | 45.0% |
| ! | AGGTGGCTTGTCCAAACTTA+TGG | + | chr3.3:8507913-8507932 | MS.gene069308:CDS | 45.0% |
| ! | GCACGGAGAATCTTCCTTTT+CGG | + | chr3.3:8506644-8506663 | MS.gene069308:CDS | 45.0% |
| ! | TCATGCTGAGTTGGACTTCA+AGG | + | chr3.3:8508110-8508129 | MS.gene069308:CDS | 45.0% |
| ! | TCTGATGTTGGCCTGTTGTT+AGG | - | chr3.3:8506343-8506362 | None:intergenic | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr3.3:8506409-8506428 | MS.gene069308:CDS | 45.0% |
| !!! | GCTAGCATTTTTTGGGCAGA+TGG | + | chr3.3:8506817-8506836 | MS.gene069308:CDS | 45.0% |
| ACCACTGGACTGTCTGATGT+TGG | - | chr3.3:8506355-8506374 | None:intergenic | 50.0% | |
| GAACCGCATCAGTTGACTGT+TGG | - | chr3.3:8508166-8508185 | None:intergenic | 50.0% | |
| GACACACACACCTACACACT+AGG | - | chr3.3:8507033-8507052 | None:intergenic | 50.0% | |
| GGCCTACTTCAGACTTTAGG+TGG | + | chr3.3:8507896-8507915 | MS.gene069308:CDS | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | + | chr3.3:8506622-8506641 | MS.gene069308:CDS | 50.0% | |
| TGAAATTCGTGCAACCTCGC+CGG | - | chr3.3:8505638-8505657 | None:intergenic | 50.0% | |
| ! | CGTCAAAAGGAGATGGTGGT+TGG | + | chr3.3:8506700-8506719 | MS.gene069308:CDS | 50.0% |
| GCCAACATCAGACAGTCCAG+TGG | + | chr3.3:8506351-8506370 | MS.gene069308:CDS | 55.0% | |
| TGGGCTTTGCTCATGGCACA+TGG | + | chr3.3:8507733-8507752 | MS.gene069308:intron | 55.0% | |
| ATCACATCGGAGCGCGAGCA+AGG | - | chr3.3:8505662-8505681 | None:intergenic | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr3.3:8506627-8506646 | MS.gene069308:CDS | 60.0% | |
| TCACATCGGAGCGCGAGCAA+GGG | - | chr3.3:8505661-8505680 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 8505626 | 8508537 | 8505626 | ID=MS.gene069308 |
| chr3.3 | mRNA | 8505626 | 8508537 | 8505626 | ID=MS.gene069308.t1;Parent=MS.gene069308 |
| chr3.3 | exon | 8505626 | 8505715 | 8505626 | ID=MS.gene069308.t1.exon1;Parent=MS.gene069308.t1 |
| chr3.3 | CDS | 8505626 | 8505715 | 8505626 | ID=cds.MS.gene069308.t1;Parent=MS.gene069308.t1 |
| chr3.3 | exon | 8506022 | 8506925 | 8506022 | ID=MS.gene069308.t1.exon2;Parent=MS.gene069308.t1 |
| chr3.3 | CDS | 8506022 | 8506925 | 8506022 | ID=cds.MS.gene069308.t1;Parent=MS.gene069308.t1 |
| chr3.3 | exon | 8507531 | 8507722 | 8507531 | ID=MS.gene069308.t1.exon3;Parent=MS.gene069308.t1 |
| chr3.3 | CDS | 8507531 | 8507722 | 8507531 | ID=cds.MS.gene069308.t1;Parent=MS.gene069308.t1 |
| chr3.3 | exon | 8507836 | 8508305 | 8507836 | ID=MS.gene069308.t1.exon4;Parent=MS.gene069308.t1 |
| chr3.3 | CDS | 8507836 | 8508305 | 8507836 | ID=cds.MS.gene069308.t1;Parent=MS.gene069308.t1 |
| chr3.3 | exon | 8508394 | 8508537 | 8508394 | ID=MS.gene069308.t1.exon5;Parent=MS.gene069308.t1 |
| chr3.3 | CDS | 8508394 | 8508537 | 8508394 | ID=cds.MS.gene069308.t1;Parent=MS.gene069308.t1 |
| Gene Sequence |
| Protein sequence |
