AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069382

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069382.t1 MTR_0036s0260 86.765 68 9 0 74 141 28 95 5.72e-39 131
MS.gene069382.t1 MTR_2g090305 82.353 68 12 0 74 141 28 95 2.64e-35 121
MS.gene069382.t1 MTR_4g100630 71.014 69 20 0 73 141 94 162 1.27e-31 115
MS.gene069382.t1 MTR_2g100930 57.955 88 37 0 54 141 89 176 1.99e-31 115
MS.gene069382.t1 MTR_5g037080 80.556 72 14 0 73 144 101 172 2.30e-31 114
MS.gene069382.t1 MTR_6g092540 72.727 66 18 0 73 138 96 161 2.98e-31 113
MS.gene069382.t1 MTR_4g107230 90.141 71 7 0 73 143 83 153 2.11e-30 111
MS.gene069382.t1 MTR_8g101650 69.697 66 19 1 73 138 104 168 1.09e-28 106
MS.gene069382.t1 MTR_4g111975 66.176 68 23 0 73 140 137 204 5.26e-28 105
MS.gene069382.t1 MTR_1g111830 63.235 68 25 0 73 140 123 190 1.66e-26 100
MS.gene069382.t1 MTR_3g462790 63.235 68 25 0 73 140 146 213 1.03e-25 99.8
MS.gene069382.t1 MTR_5g069710 63.235 68 25 0 73 140 131 198 1.47e-25 99.0
MS.gene069382.t1 MTR_7g067080 62.687 67 25 0 73 139 139 205 5.66e-25 97.4
MS.gene069382.t1 MTR_4g064933 81.667 60 2 1 17 67 75 134 1.27e-24 93.2
MS.gene069382.t1 MTR_5g081860 57.534 73 29 1 73 143 124 196 1.30e-22 90.5
MS.gene069382.t1 MTR_3g104370 57.971 69 26 1 73 138 90 158 2.25e-22 89.0
MS.gene069382.t1 MTR_8g063600 50.602 83 37 2 61 139 91 173 9.17e-20 83.2
MS.gene069382.t1 MTR_5g027570 47.059 68 34 1 74 139 92 159 5.69e-18 77.4
MS.gene069382.t1 MTR_8g063870 48.148 81 35 2 61 139 84 159 5.83e-18 78.2
MS.gene069382.t1 MTR_1g048660 50.000 64 32 0 75 138 13 76 8.61e-18 73.6
MS.gene069382.t1 MTR_5g088010 41.463 82 42 2 73 148 59 140 1.56e-16 73.9
MS.gene069382.t1 MTR_1g033620 61.538 52 20 0 89 140 20 71 5.70e-16 72.4
MS.gene069382.t1 MTR_4g015130 55.357 56 25 0 84 139 3 58 6.43e-16 68.6
MS.gene069382.t1 MTR_5g088060 43.038 79 39 2 76 148 274 352 8.55e-16 73.6
MS.gene069382.t1 MTR_5g488160 43.038 79 39 2 76 148 274 352 8.55e-16 73.6
MS.gene069382.t1 MTR_5g027550 44.156 77 37 2 74 144 77 153 9.64e-15 68.9
MS.gene069382.t1 MTR_4g019800 60.000 60 15 1 17 67 75 134 2.01e-14 67.0
MS.gene069382.t1 MTR_7g065770 55.000 60 18 1 17 67 75 134 6.43e-13 62.8
MS.gene069382.t1 MTR_1g083180 44.286 70 35 2 76 142 63 131 1.12e-11 60.1
MS.gene069382.t1 MTR_5g075760 46.269 67 33 2 76 140 107 172 3.15e-11 59.3
MS.gene069382.t1 MTR_5g077130 46.970 66 26 1 12 68 70 135 7.87e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069382.t1 AT5G47390 71.831 71 20 0 73 143 95 165 6.70e-33 119
MS.gene069382.t1 AT1G70000 76.000 75 18 0 73 147 97 171 1.78e-29 108
MS.gene069382.t1 AT1G70000 76.000 75 18 0 73 147 97 171 1.78e-29 108
MS.gene069382.t1 AT1G49010 67.647 68 22 0 73 140 133 200 1.62e-28 107
MS.gene069382.t1 AT1G74840 80.556 72 14 0 73 144 95 166 3.87e-27 101
MS.gene069382.t1 AT1G74840 80.556 72 14 0 73 144 95 166 5.44e-27 102
MS.gene069382.t1 AT2G38090 63.235 68 25 0 73 140 140 207 1.27e-26 101
MS.gene069382.t1 AT5G04760 63.235 68 25 0 73 140 98 165 1.37e-26 99.8
MS.gene069382.t1 AT1G19000 75.000 76 19 0 73 148 101 176 1.48e-26 101
MS.gene069382.t1 AT1G19000 75.000 76 19 0 73 148 101 176 1.48e-26 101
MS.gene069382.t1 AT5G56840 62.319 69 25 1 73 140 90 158 1.84e-26 99.8
MS.gene069382.t1 AT5G08520 63.235 68 25 0 73 140 117 184 2.38e-26 100
MS.gene069382.t1 AT3G16350 66.667 72 24 0 73 144 136 207 3.79e-26 101
MS.gene069382.t1 AT5G58900 63.235 68 25 0 73 140 140 207 4.24e-26 100
MS.gene069382.t1 AT5G61620 64.706 68 22 2 73 139 107 173 1.12e-25 99.4
MS.gene069382.t1 AT5G01200 58.824 68 28 0 73 140 145 212 3.28e-23 92.0
MS.gene069382.t1 AT5G05790 51.948 77 37 0 73 149 130 206 1.21e-22 90.9
MS.gene069382.t1 AT5G05790 51.948 77 37 0 73 149 130 206 1.21e-22 90.9
MS.gene069382.t1 AT3G11280 54.167 72 33 0 73 144 126 197 1.56e-22 90.1
MS.gene069382.t1 AT3G11280 54.167 72 33 0 73 144 126 197 1.56e-22 90.1
MS.gene069382.t1 AT3G10580 55.224 67 28 1 73 139 94 158 3.29e-20 84.0
MS.gene069382.t1 AT3G10580 55.224 67 28 1 73 139 94 158 4.12e-20 84.3
MS.gene069382.t1 AT4G09450 48.611 72 37 0 73 144 90 161 1.06e-18 79.0
MS.gene069382.t1 AT5G23650 38.938 113 65 2 27 139 77 185 1.10e-18 80.9
MS.gene069382.t1 AT3G10590 47.826 69 35 1 75 143 112 179 7.57e-16 71.6
MS.gene069382.t1 AT3G53990 56.667 60 17 1 17 67 75 134 1.51e-13 64.3

Find 34 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAACCTGATGCTGAGGTTT+TGG 0.305007 2.3:+17820281 MS.gene069382:CDS
GGTTATGGGTAGCAGAGGTT+TGG 0.337295 2.3:+17820552 MS.gene069382:CDS
GAAGCTTGATGCTTTGGTTA+TGG 0.340692 2.3:+17820537 MS.gene069382:CDS
AAGCTTGATGCTTTGGTTAT+GGG 0.345992 2.3:+17820538 MS.gene069382:CDS
ATACAAAGCTACTACTACTT+TGG 0.349422 2.3:+17820580 MS.gene069382:CDS
GTTATGGGTAGCAGAGGTTT+GGG 0.355817 2.3:+17820553 MS.gene069382:CDS
GGATTTGAAGCTTGATGCTT+TGG 0.359554 2.3:+17820531 MS.gene069382:CDS
TACTGCTTCTAGACAGAAAC+AGG 0.372801 2.3:+17820314 MS.gene069382:CDS
GAGAAGATTGTTGATTCTGC+TGG 0.387065 2.3:+17820508 MS.gene069382:CDS
TTGGTTGGATTGGAGAAAGT+GGG 0.463944 2.3:+17822283 MS.gene069382:CDS
AGAAAGTGGGAAAAGGTGAT+TGG 0.482958 2.3:+17822296 MS.gene069382:CDS
ATGTCCAAAACCTCAGCATC+AGG 0.483455 2.3:-17820285 None:intergenic
TGCATGTTGCAAGTCATGTT+CGG 0.492853 2.3:+17822359 MS.gene069382:CDS
AGAAGATTGTTGATTCTGCT+GGG 0.498696 2.3:+17820509 MS.gene069382:CDS
TTTCAAGACCTTCGATCCCT+CGG 0.505836 2.3:+17820106 MS.gene069382:CDS
AACGCATACCGAGGGATCGA+AGG 0.511646 2.3:-17820114 None:intergenic
AAAGTAGTAGTAGCTTTGTA+TGG 0.511830 2.3:-17820578 None:intergenic
TTTGGTTGGATTGGAGAAAG+TGG 0.531455 2.3:+17822282 MS.gene069382:CDS
GGTGGTGATATCAAAGAGAC+TGG 0.540239 2.3:-17822428 None:intergenic
ACATGACTTGCAACATGCAT+AGG 0.550350 2.3:-17822355 None:intergenic
GCTTTGGTTATGGGTAGCAG+AGG 0.552540 2.3:+17820547 MS.gene069382:CDS
GGATTGGAGAAAGTGGGAAA+AGG 0.562648 2.3:+17822289 MS.gene069382:CDS
TTGTGCTCTTCCTCAGTCCA+CGG 0.578432 2.3:-17822253 None:intergenic
TATCAAAGAGACTGGATCTA+CGG 0.592657 2.3:-17822420 None:intergenic
TGGTGCGCACCAGTATGAAG+TGG 0.601581 2.3:+17820260 MS.gene069382:intron
GTCTTGAAAATGATGTTGCA+TGG 0.601638 2.3:-17820092 None:intergenic
GTGATTGGAGAGGAATCTCA+AGG 0.619264 2.3:+17822311 MS.gene069382:CDS
GTGGGAAAAGGTGATTGGAG+AGG 0.624127 2.3:+17822301 MS.gene069382:CDS
TGAATGGATCAGGGATTCCG+TGG 0.626840 2.3:+17822236 MS.gene069382:intron
GAAGATTGTTGATTCTGCTG+GGG 0.634414 2.3:+17820510 MS.gene069382:CDS
CTTTGATATCACCACCGACA+CGG 0.638033 2.3:+17822435 MS.gene069382:CDS
ATCAGGGATTCCGTGGACTG+AGG 0.660333 2.3:+17822243 MS.gene069382:intron
GACGACGATTGAGATTACTT+CGG 0.683656 2.3:-17822396 None:intergenic
TGAAGTGGAACCTGATGCTG+AGG 0.704528 2.3:+17820275 MS.gene069382:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAATATAATAGTTTAA+GGG - chr2.3:17821524-17821543 None:intergenic 10.0%
!! AAAGAATATAATAGTTTAAG+GGG - chr2.3:17821523-17821542 None:intergenic 15.0%
!! AACTAAAAAGAAAAAAATAC+AGG - chr2.3:17820990-17821009 None:intergenic 15.0%
!! ATAATTCCAATGTATAATAA+TGG - chr2.3:17820906-17820925 None:intergenic 15.0%
!! CAAAAATAATAAAAATTGGA+TGG - chr2.3:17821678-17821697 None:intergenic 15.0%
!! GAAAAGAATATAATAGTTTA+AGG - chr2.3:17821525-17821544 None:intergenic 15.0%
!! GATTAATTAATGTTTGAATT+TGG + chr2.3:17820384-17820403 MS.gene069382:intron 15.0%
!! TAATCATATAAATGAGTATT+TGG - chr2.3:17820838-17820857 None:intergenic 15.0%
!! TTCGTTACAAAATAAAATAT+CGG + chr2.3:17820651-17820670 MS.gene069382:intron 15.0%
!!! TTTTTTAATTATCGATTAGT+GGG + chr2.3:17820341-17820360 MS.gene069382:intron 15.0%
!!! TTTTTTTAATTATCGATTAG+TGG + chr2.3:17820340-17820359 MS.gene069382:intron 15.0%
!! ATTACCTAGATATGAAATTA+TGG - chr2.3:17820725-17820744 None:intergenic 20.0%
!! ATTTCAATCAATTCAAACAA+AGG - chr2.3:17822186-17822205 None:intergenic 20.0%
!! CTGGCAAAAATAATAAAAAT+TGG - chr2.3:17821682-17821701 None:intergenic 20.0%
!! TATTGAAGCAAAAATATTCA+TGG - chr2.3:17821623-17821642 None:intergenic 20.0%
!! TTAAACTTATAAAGAAAAGC+TGG - chr2.3:17821701-17821720 None:intergenic 20.0%
!!! ACATTCAATTATGTATTTTC+CGG + chr2.3:17821105-17821124 MS.gene069382:intron 20.0%
!!! TTGATTTTTTCCTTTTTGAT+TGG + chr2.3:17820208-17820227 MS.gene069382:intron 20.0%
!!! TTTTTATAAGATGTTTGTTG+AGG + chr2.3:17820420-17820439 MS.gene069382:intron 20.0%
! AAAAAATCACACAAACACAA+AGG - chr2.3:17820614-17820633 None:intergenic 25.0%
! AAAAGAATGATCTTGAATAG+AGG - chr2.3:17821198-17821217 None:intergenic 25.0%
! AAAATCAATCAAAACAACAC+CGG - chr2.3:17820196-17820215 None:intergenic 25.0%
! AATATCTACTTAAAATCCTG+AGG - chr2.3:17822035-17822054 None:intergenic 25.0%
! ACAAATATCTCCAATCAAAA+AGG - chr2.3:17820221-17820240 None:intergenic 25.0%
! ATCAAGCCATTATTATACAT+TGG + chr2.3:17820897-17820916 MS.gene069382:intron 25.0%
! CAACATTAATCCAATATATC+TGG + chr2.3:17821149-17821168 MS.gene069382:intron 25.0%
! GATGTAGTTATTCCAATTAA+AGG - chr2.3:17821965-17821984 None:intergenic 25.0%
! GGAAAATACATAATTGAATG+TGG - chr2.3:17821106-17821125 None:intergenic 25.0%
! TAAGCCATAATTTCATATCT+AGG + chr2.3:17820718-17820737 MS.gene069382:intron 25.0%
!! TTGTTATTAACAGCATAAAG+TGG + chr2.3:17821290-17821309 MS.gene069382:intron 25.0%
!!! ACTTAAGTTGAATTGTGTAT+AGG + chr2.3:17820447-17820466 MS.gene069382:intron 25.0%
!!! TGTCATTGATTTTCTTTGAA+TGG + chr2.3:17822220-17822239 MS.gene069382:intron 25.0%
!!! TTTTGATTGGAGATATTTGT+TGG + chr2.3:17820221-17820240 MS.gene069382:intron 25.0%
!!! TTTTTTCTTCATATTTGACG+AGG + chr2.3:17820786-17820805 MS.gene069382:intron 25.0%
AATCAAATGAAGTTGAATGG+TGG + chr2.3:17821313-17821332 MS.gene069382:intron 30.0%
AATGCAGCACAATTCAAAAT+TGG - chr2.3:17821887-17821906 None:intergenic 30.0%
ATAACTACATCTTATGCAAG+AGG + chr2.3:17821974-17821993 MS.gene069382:intron 30.0%
ATACAAAGCTACTACTACTT+TGG + chr2.3:17820580-17820599 MS.gene069382:CDS 30.0%
ATCAAATGAAGTTGAATGGT+GGG + chr2.3:17821314-17821333 MS.gene069382:intron 30.0%
CAAATTCACAAAAAACACAC+AGG - chr2.3:17821821-17821840 None:intergenic 30.0%
GCTTCAATATTAATTGTGTC+TGG + chr2.3:17821634-17821653 MS.gene069382:intron 30.0%
TGGAATCAAATGAAGTTGAA+TGG + chr2.3:17821310-17821329 MS.gene069382:intron 30.0%
TGTGCTGCATTATTCATTTA+GGG + chr2.3:17821896-17821915 MS.gene069382:intron 30.0%
TTCATATCTAGGTAATCAAC+AGG + chr2.3:17820729-17820748 MS.gene069382:intron 30.0%
TTGAGCAGTGTGTATAATAA+TGG - chr2.3:17820940-17820959 None:intergenic 30.0%
TTGTGCTGCATTATTCATTT+AGG + chr2.3:17821895-17821914 MS.gene069382:intron 30.0%
TTTAATCTTTCATCTCTAGC+AGG + chr2.3:17821716-17821735 MS.gene069382:intron 30.0%
! GATTTTCTTTGAATGGATCA+GGG + chr2.3:17822227-17822246 MS.gene069382:intron 30.0%
! TCTCACGTTTAAATGGTTTT+TGG + chr2.3:17822091-17822110 MS.gene069382:intron 30.0%
! TGATTTTCTTTGAATGGATC+AGG + chr2.3:17822226-17822245 MS.gene069382:intron 30.0%
!! AAAGTAGTAGTAGCTTTGTA+TGG - chr2.3:17820581-17820600 None:intergenic 30.0%
!! CGATTTTGATATCGCAATTA+GGG + chr2.3:17820159-17820178 MS.gene069382:intron 30.0%
!! TCGATTTTGATATCGCAATT+AGG + chr2.3:17820158-17820177 MS.gene069382:intron 30.0%
!!! ACTCAGCAACAAACATTTTT+TGG - chr2.3:17821767-17821786 None:intergenic 30.0%
AAACTAAAAACGCATACCGA+GGG - chr2.3:17820125-17820144 None:intergenic 35.0%
AAGCTTGATGCTTTGGTTAT+GGG + chr2.3:17820538-17820557 MS.gene069382:CDS 35.0%
ACAAAAAACACACAGGATAG+GGG - chr2.3:17821814-17821833 None:intergenic 35.0%
ACATGTGCACAACCTTTAAT+TGG + chr2.3:17821950-17821969 MS.gene069382:intron 35.0%
AGCAGCAAAAAAGAGTTATG+GGG + chr2.3:17821364-17821383 MS.gene069382:intron 35.0%
ATAATAGTTTAAGGGGAGTG+TGG - chr2.3:17821516-17821535 None:intergenic 35.0%
CACAAAAAACACACAGGATA+GGG - chr2.3:17821815-17821834 None:intergenic 35.0%
CATTAAAGGTTGTTTACCTC+AGG + chr2.3:17822016-17822035 MS.gene069382:intron 35.0%
CTACATGTCTCACGTTTAAA+TGG + chr2.3:17822084-17822103 MS.gene069382:intron 35.0%
GAATGATCTTGAATAGAGGA+TGG - chr2.3:17821194-17821213 None:intergenic 35.0%
GAGCAGCAAAAAAGAGTTAT+GGG + chr2.3:17821363-17821382 MS.gene069382:intron 35.0%
GATCAAATGAAGTTGAATGG+TGG + chr2.3:17821336-17821355 MS.gene069382:intron 35.0%
GATGGAGCAAATTGAAACAA+AGG - chr2.3:17821660-17821679 None:intergenic 35.0%
GTCTTGAAAATGATGTTGCA+TGG - chr2.3:17820095-17820114 None:intergenic 35.0%
GTGCTGCATTATTCATTTAG+GGG + chr2.3:17821897-17821916 MS.gene069382:intron 35.0%
TAACAACAACATATTGTCGC+CGG - chr2.3:17821127-17821146 None:intergenic 35.0%
TATCAAAGAGACTGGATCTA+CGG - chr2.3:17822423-17822442 None:intergenic 35.0%
TCAAATGAAGTTGAATGGTG+GGG + chr2.3:17821315-17821334 MS.gene069382:intron 35.0%
TCACAAAAAACACACAGGAT+AGG - chr2.3:17821816-17821835 None:intergenic 35.0%
TCACTTGGATTGAGCATTAA+AGG + chr2.3:17822002-17822021 MS.gene069382:intron 35.0%
TGAGCAGCAAAAAAGAGTTA+TGG + chr2.3:17821362-17821381 MS.gene069382:intron 35.0%
TGGGATCAAATGAAGTTGAA+TGG + chr2.3:17821333-17821352 MS.gene069382:intron 35.0%
TTGGTTTCGTGAGAAGAATA+TGG + chr2.3:17820240-17820259 MS.gene069382:intron 35.0%
TTTGGCACAAAGTTCAGATT+AGG - chr2.3:17820820-17820839 None:intergenic 35.0%
! AATTAGGGTTTTTGTATCGC+CGG + chr2.3:17820174-17820193 MS.gene069382:intron 35.0%
!! AGAAGATTGTTGATTCTGCT+GGG + chr2.3:17820509-17820528 MS.gene069382:CDS 35.0%
!! TAGCAGGTTTGTTACTTACA+AGG + chr2.3:17821857-17821876 MS.gene069382:intron 35.0%
!!! CAAGATGTTTTTGGTTGGAT+TGG + chr2.3:17822273-17822292 MS.gene069382:CDS 35.0%
!!! GGTGGTCTATTGATTCTTTT+GGG - chr2.3:17821431-17821450 None:intergenic 35.0%
!!! GTGGTCTATTGATTCTTTTG+GGG - chr2.3:17821430-17821449 None:intergenic 35.0%
!!! GTTTTTTGTGAATTTGCTCC+TGG + chr2.3:17821825-17821844 MS.gene069382:intron 35.0%
AAAGAGTAATGCAACCGTAC+AGG - chr2.3:17820696-17820715 None:intergenic 40.0%
AAGAGTAATGCAACCGTACA+GGG - chr2.3:17820695-17820714 None:intergenic 40.0%
AGAAAGTGGGAAAAGGTGAT+TGG + chr2.3:17822296-17822315 MS.gene069382:CDS 40.0%
ATGCAAGAGGAACTTTCACT+TGG + chr2.3:17821987-17822006 MS.gene069382:intron 40.0%
CAAAAAACACACAGGATAGG+GGG - chr2.3:17821813-17821832 None:intergenic 40.0%
CATGTCATCAGAATCGATCA+CGG - chr2.3:17821452-17821471 None:intergenic 40.0%
CATTCTCTCTGAGCAAACAA+TGG + chr2.3:17822061-17822080 MS.gene069382:intron 40.0%
GAAACTAAAAACGCATACCG+AGG - chr2.3:17820126-17820145 None:intergenic 40.0%
GAAGCTTGATGCTTTGGTTA+TGG + chr2.3:17820537-17820556 MS.gene069382:CDS 40.0%
GAATTGTGTATAGGTGACTG+TGG + chr2.3:17820456-17820475 MS.gene069382:intron 40.0%
GACGACGATTGAGATTACTT+CGG - chr2.3:17822399-17822418 None:intergenic 40.0%
TACTGCTTCTAGACAGAAAC+AGG + chr2.3:17820314-17820333 MS.gene069382:CDS 40.0%
TCGATTCTGATGACATGGAA+TGG + chr2.3:17821455-17821474 MS.gene069382:intron 40.0%
TGCATGTTGCAAGTCATGTT+CGG + chr2.3:17822359-17822378 MS.gene069382:CDS 40.0%
TGCCGAAAAAATTACCGTGT+CGG - chr2.3:17822452-17822471 None:intergenic 40.0%
! ACATGACTTGCAACATGCAT+AGG - chr2.3:17822358-17822377 None:intergenic 40.0%
! GAATTTGCTCCTGGTTTGTA+AGG + chr2.3:17821834-17821853 MS.gene069382:intron 40.0%
! GGATTTGAAGCTTGATGCTT+TGG + chr2.3:17820531-17820550 MS.gene069382:CDS 40.0%
! TTGGTTGGATTGGAGAAAGT+GGG + chr2.3:17822283-17822302 MS.gene069382:CDS 40.0%
! TTTGGTTGGATTGGAGAAAG+TGG + chr2.3:17822282-17822301 MS.gene069382:CDS 40.0%
!! GAAGATTGTTGATTCTGCTG+GGG + chr2.3:17820510-17820529 MS.gene069382:CDS 40.0%
!! GAGAAGATTGTTGATTCTGC+TGG + chr2.3:17820508-17820527 MS.gene069382:CDS 40.0%
!! GGAAGAGCACAAGATGTTTT+TGG + chr2.3:17822264-17822283 MS.gene069382:CDS 40.0%
!!! CACCGACACGGTAATTTTTT+CGG + chr2.3:17822447-17822466 MS.gene069382:CDS 40.0%
!!! CGGTGGTCTATTGATTCTTT+TGG - chr2.3:17821432-17821451 None:intergenic 40.0%
!!! GAGCACAAGATGTTTTTGGT+TGG + chr2.3:17822268-17822287 MS.gene069382:CDS 40.0%
AACCTGCTACCTTACAAACC+AGG - chr2.3:17821846-17821865 None:intergenic 45.0%
ATGTCCAAAACCTCAGCATC+AGG - chr2.3:17820288-17820307 None:intergenic 45.0%
CATCAGGTTCCACTTCATAC+TGG - chr2.3:17820272-17820291 None:intergenic 45.0%
CGAAAAAATTACCGTGTCGG+TGG - chr2.3:17822449-17822468 None:intergenic 45.0%
CTTGCAGAACTATCCCTGTA+CGG + chr2.3:17820679-17820698 MS.gene069382:intron 45.0%
CTTTGATATCACCACCGACA+CGG + chr2.3:17822435-17822454 MS.gene069382:CDS 45.0%
GAAGAAAGTTGACGCAGAGA+TGG - chr2.3:17821082-17821101 None:intergenic 45.0%
GGATTGGAGAAAGTGGGAAA+AGG + chr2.3:17822289-17822308 MS.gene069382:CDS 45.0%
GGTGGTGATATCAAAGAGAC+TGG - chr2.3:17822431-17822450 None:intergenic 45.0%
GTGATTGGAGAGGAATCTCA+AGG + chr2.3:17822311-17822330 MS.gene069382:CDS 45.0%
GTTATGGGTAGCAGAGGTTT+GGG + chr2.3:17820553-17820572 MS.gene069382:CDS 45.0%
TTACATGATCGGGGGATTGA+TGG - chr2.3:17821492-17821511 None:intergenic 45.0%
TTTCAAGACCTTCGATCCCT+CGG + chr2.3:17820106-17820125 MS.gene069382:CDS 45.0%
! CGTGATCGATTCTGATGACA+TGG + chr2.3:17821450-17821469 MS.gene069382:intron 45.0%
! GTGGTAGCGAAGGTATACTA+GGG + chr2.3:17820475-17820494 MS.gene069382:intron 45.0%
! TGTGGTAGCGAAGGTATACT+AGG + chr2.3:17820474-17820493 MS.gene069382:intron 45.0%
!! TGACATGGAATGGTGTTGCT+TGG + chr2.3:17821465-17821484 MS.gene069382:intron 45.0%
AGTGTGGCTTACATGATCGG+GGG - chr2.3:17821500-17821519 None:intergenic 50.0%
GAGGATGGACACATTGTTGC+TGG - chr2.3:17821179-17821198 None:intergenic 50.0%
GAGTGTGGCTTACATGATCG+GGG - chr2.3:17821501-17821520 None:intergenic 50.0%
GAGTTATGGGGTTCAAAGCC+AGG + chr2.3:17821376-17821395 MS.gene069382:intron 50.0%
GCTTTGGTTATGGGTAGCAG+AGG + chr2.3:17820547-17820566 MS.gene069382:CDS 50.0%
GGAGTGTGGCTTACATGATC+GGG - chr2.3:17821502-17821521 None:intergenic 50.0%
GGCTGAGAAGAGACTGCTAT+TGG + chr2.3:17821918-17821937 MS.gene069382:intron 50.0%
GGTTATGGGTAGCAGAGGTT+TGG + chr2.3:17820552-17820571 MS.gene069382:CDS 50.0%
GTCATCAGAATCGATCACGG+TGG - chr2.3:17821449-17821468 None:intergenic 50.0%
GTGGGAAAAGGTGATTGGAG+AGG + chr2.3:17822301-17822320 MS.gene069382:CDS 50.0%
TGAAGTGGAACCTGATGCTG+AGG + chr2.3:17820275-17820294 MS.gene069382:CDS 50.0%
TGAATGGATCAGGGATTCCG+TGG + chr2.3:17822236-17822255 MS.gene069382:intron 50.0%
TGCTGGTGCGCCAGATATAT+TGG - chr2.3:17821162-17821181 None:intergenic 50.0%
TTGTGCTCTTCCTCAGTCCA+CGG - chr2.3:17822256-17822275 None:intergenic 50.0%
! ATAGGTGACTGTGGTAGCGA+AGG + chr2.3:17820465-17820484 MS.gene069382:intron 50.0%
! CTCCTGGTTTGTAAGGTAGC+AGG + chr2.3:17821841-17821860 MS.gene069382:intron 50.0%
! GGAACCTGATGCTGAGGTTT+TGG + chr2.3:17820281-17820300 MS.gene069382:CDS 50.0%
! GGGAGTGTGGCTTACATGAT+CGG - chr2.3:17821503-17821522 None:intergenic 50.0%
AACGCATACCGAGGGATCGA+AGG - chr2.3:17820117-17820136 None:intergenic 55.0%
TGGGGTTCAAAGCCAGGAAG+CGG + chr2.3:17821382-17821401 MS.gene069382:intron 55.0%
TGGTGCGCACCAGTATGAAG+TGG + chr2.3:17820260-17820279 MS.gene069382:intron 55.0%
! ATCAGGGATTCCGTGGACTG+AGG + chr2.3:17822243-17822262 MS.gene069382:intron 55.0%
!!! CTTTTGGGGCTGCAGTGAGA+TGG - chr2.3:17821416-17821435 None:intergenic 55.0%
ATGGCAGCACAACCGCTTCC+TGG - chr2.3:17821397-17821416 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 17820080 17822480 17820080 ID=MS.gene069382
chr2.3 mRNA 17820080 17822480 17820080 ID=MS.gene069382.t1;Parent=MS.gene069382
chr2.3 exon 17820080 17820127 17820080 ID=MS.gene069382.t1.exon1;Parent=MS.gene069382.t1
chr2.3 CDS 17820080 17820127 17820080 ID=cds.MS.gene069382.t1;Parent=MS.gene069382.t1
chr2.3 exon 17820273 17820335 17820273 ID=MS.gene069382.t1.exon2;Parent=MS.gene069382.t1
chr2.3 CDS 17820273 17820335 17820273 ID=cds.MS.gene069382.t1;Parent=MS.gene069382.t1
chr2.3 exon 17820496 17820601 17820496 ID=MS.gene069382.t1.exon3;Parent=MS.gene069382.t1
chr2.3 CDS 17820496 17820601 17820496 ID=cds.MS.gene069382.t1;Parent=MS.gene069382.t1
chr2.3 exon 17822248 17822480 17822248 ID=MS.gene069382.t1.exon4;Parent=MS.gene069382.t1
chr2.3 CDS 17822248 17822480 17822248 ID=cds.MS.gene069382.t1;Parent=MS.gene069382.t1
Gene Sequence

>MS.gene069382

ATGAGAATGCTTCCATGCAACATCATTTTCAAGACCTTCGATCCCTCGGTATGCGTTTTTAGTTTCGTTACGTTTTGATCGATTTTGATATCGCAATTAGGGTTTTTGTATCGCCGGTGTTGTTTTGATTGATTTTTTCCTTTTTGATTGGAGATATTTGTTGGTTTCGTGAGAAGAATATGGTGCGCACCAGTATGAAGTGGAACCTGATGCTGAGGTTTTGGACATACTTGATACTGCTTCTAGACAGAAACAGGTTTTTTTTTTAATTATCGATTAGTGGGTTGTTTTTTTTTAATGTTTTGATTAATTAATGTTTGAATTTGGTTAAGTTAACATTTTTTTATAAGATGTTTGTTGAGGTTTCACTTAAGTTGAATTGTGTATAGGTGACTGTGGTAGCGAAGGTATACTAGGGTGATGCAAGAGAGAAGATTGTTGATTCTGCTGGGGATTTGAAGCTTGATGCTTTGGTTATGGGTAGCAGAGGTTTGGGTGCCATACAAAGCTACTACTACTTTGGTTTGTTTTCCTTTGTGTTTGTGTGATTTTTTCTTTATTGAAATATGATTTCGTTACAAAATAAAATATCGGAATTGCTTGCAGAACTATCCCTGTACGGTTGCATTACTCTTTTCTAAGCCATAATTTCATATCTAGGTAATCAACAGGTTGTTTGATTTAATTGTAACTGCATTTTATTCTTTTTTTTCTTCATATTTGACGAGGCTAACTAACCTAATCTGAACTTTGTGCCAAATACTCATTTATATGATTACTCAAAAAAAAATTGACTTTAAAACTTCATATATGTGTAATCAAGCCATTATTATACATTGGAATTATGTGTAATCAAGCCATTATTATACACACTGCTCAAACACGACTTTATTTTGAGACTTGAATTCCTGTATTTTTTTCTTTTTAGTTCATGCGCAGTGTATATTTGAAAGTTGTAAATTGATCAGTTTTTGACAGCTTAGATTTAGATTGAGACTTCCATCTCTGCGTCAACTTTCTTCTCCACATTCAATTATGTATTTTCCGGCGACAATATGTTGTTGTTAAGCAACATTAATCCAATATATCTGGCGCACCAGCAACAATGTGTCCATCCTCTATTCAAGATCATTCTTTTCTATGACTAATTCACATTGTTTTCTAACTTATAGATGAAATTTTATATATTTATTCTGAATTTCATATAAAATTGTTATTAACAGCATAAAGTGGAATCAAATGAAGTTGAATGGTGGGATCAAATGAAGTTGAATGGTGGGGCTGAGCAGCAAAAAAGAGTTATGGGGTTCAAAGCCAGGAAGCGGTTGTGCTGCCATCTCACTGCAGCCCCAAAAGAATCAATAGACCACCGTGATCGATTCTGATGACATGGAATGGTGTTGCTTGGTCCATCAATCCCCCGATCATGTAAGCCACACTCCCCTTAAACTATTATATTCTTTTCAATTTTCAACATTTTATATCAGATATCACAACACTTATGAATAGAGTAATTATATTTAACATATGAAATTATAGACCATGAATATTTTTGCTTCAATATTAATTGTGTCTGGCCTTTGTTTCAATTTGCTCCATCCAATTTTTATTATTTTTGCCAGCTTTTCTTTATAAGTTTAATCTTTCATCTCTAGCAGGCAATGTCTATCATGAAGATTCAAAACCAAAAAATGTTTGTTGCTGAGTTTTTGAGAGCTGTTTTTTGTGTGCCCCCTATCCTGTGTGTTTTTTGTGAATTTGCTCCTGGTTTGTAAGGTAGCAGGTTTGTTACTTACAAGGATGTCCAATTTTGAATTGTGCTGCATTATTCATTTAGGGGCTGAGAAGAGACTGCTATTGGAGTTAACATACATGTGCACAACCTTTAATTGGAATAACTACATCTTATGCAAGAGGAACTTTCACTTGGATTGAGCATTAAAGGTTGTTTACCTCAGGATTTTAAGTAGATATTTGACTACATTCTCTCTGAGCAAACAATGGCTACATGTCTCACGTTTAAATGGTTTTTGGCTATTGTTTAAAAGAGATTCTATAAATTAACTAAAACTTGAAATTAACTTGATAATTTTTGTGTTTCTTCCTTTGTTTGAATTGATTGAAATTGAAAAGTAATTATTGTCATTGATTTTCTTTGAATGGATCAGGGATTCCGTGGACTGAGGAAGAGCACAAGATGTTTTTGGTTGGATTGGAGAAAGTGGGAAAAGGTGATTGGAGAGGAATCTCAAGGAACTATGTGAAAACAAGAACGCCTATGCATGTTGCAAGTCATGTTCGGAAGTACTTTCTCTGCCGAAGTAATCTCAATCGTCGTCGCCGTAGATCCAGTCTCTTTGATATCACCACCGACACGGTAATTTTTTCGGCAATCTCTTAA
Protein sequence

>MS.gene069382.t1

MRMLPCNIIFKTFDPSYEVEPDAEVLDILDTASRQKQGDAREKIVDSAGDLKLDALVMGSRGLGAIQSYYYFGIPWTEEEHKMFLVGLEKVGKGDWRGISRNYVKTRTPMHVASHVRKYFLCRSNLNRRRRRSSLFDITTDTVIFSAIS