AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069457

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069457.t1 MTR_6g078850 88.586 403 42 2 1 399 1 403 0.0 715
MS.gene069457.t1 MTR_8g068750 69.761 377 110 3 1 377 1 373 0.0 541
MS.gene069457.t1 MTR_7g118320 71.348 356 98 3 22 377 7 358 0.0 526
MS.gene069457.t1 MTR_0591s0010 66.313 377 123 3 1 377 1 373 0.0 514
MS.gene069457.t1 MTR_8g068690 67.109 377 119 4 1 377 1 372 0.0 513
MS.gene069457.t1 MTR_8g068870 67.723 347 110 2 31 377 15 359 8.93e-175 497
MS.gene069457.t1 MTR_8g068730 61.804 377 108 4 1 377 1 341 1.22e-158 455
MS.gene069457.t1 MTR_8g068570 62.751 349 99 4 1 349 1 318 7.50e-147 424
MS.gene069457.t1 MTR_7g118300 54.278 374 157 4 4 377 12 371 4.18e-146 424
MS.gene069457.t1 MTR_3g092900 51.862 349 164 2 29 377 15 359 4.70e-130 383
MS.gene069457.t1 MTR_8g068690 67.483 286 88 4 1 286 1 281 3.23e-129 378
MS.gene069457.t1 MTR_5g098170 48.753 361 182 1 17 377 2 359 2.91e-128 378
MS.gene069457.t1 MTR_8g024160 47.278 349 139 2 29 377 21 324 3.89e-118 351
MS.gene069457.t1 MTR_8g068740 61.616 297 78 4 1 297 1 261 2.25e-116 345
MS.gene069457.t1 MTR_8g068600 70.306 229 66 2 56 284 28 254 2.54e-110 329
MS.gene069457.t1 MTR_1g036460 39.826 344 196 6 31 369 19 356 2.37e-82 261
MS.gene069457.t1 MTR_1g036490 39.244 344 198 6 31 369 19 356 3.69e-80 255
MS.gene069457.t1 MTR_3g021430 40.057 352 201 7 25 373 4 348 9.94e-80 253
MS.gene069457.t1 MTR_3g021440 40.401 349 194 6 30 373 22 361 6.54e-79 252
MS.gene069457.t1 MTR_1g036510 40.290 345 193 7 31 369 33 370 8.34e-78 249
MS.gene069457.t1 MTR_7g012020 38.356 365 209 8 13 373 8 360 2.06e-77 248
MS.gene069457.t1 MTR_7g011900 37.067 375 220 7 1 373 1 361 5.16e-76 244
MS.gene069457.t1 MTR_7g011990 38.017 363 212 6 14 373 6 358 1.83e-75 243
MS.gene069457.t1 MTR_7g012040 37.151 358 214 6 13 369 8 355 7.59e-74 238
MS.gene069457.t1 MTR_2g055940 36.571 350 214 6 26 373 11 354 1.84e-73 237
MS.gene069457.t1 MTR_7g012090 39.481 347 198 6 30 369 21 362 4.16e-73 237
MS.gene069457.t1 MTR_1g096310 36.164 365 224 6 14 373 3 363 4.53e-73 236
MS.gene069457.t1 MTR_7g012070 38.298 376 211 8 1 369 1 362 5.43e-73 236
MS.gene069457.t1 MTR_7g117590 74.194 155 25 2 381 521 19 172 1.33e-72 228
MS.gene069457.t1 MTR_2g072790 34.254 362 220 6 24 382 3 349 3.37e-66 218
MS.gene069457.t1 MTR_0017s0100 34.670 349 204 12 20 362 19 349 7.34e-61 204
MS.gene069457.t1 MTR_3g096050 33.432 338 214 5 32 366 14 343 7.11e-60 202
MS.gene069457.t1 MTR_4g038440 34.770 348 205 11 20 362 19 349 2.64e-59 201
MS.gene069457.t1 MTR_0079s0070 35.423 319 189 9 49 362 9 315 9.60e-59 198
MS.gene069457.t1 MTR_7g012020 39.350 277 157 6 13 287 8 275 9.96e-55 186
MS.gene069457.t1 MTR_3g083620 34.375 320 192 8 50 365 40 345 3.32e-54 187
MS.gene069457.t1 MTR_1g036510 42.248 258 139 5 31 283 33 285 7.33e-54 184
MS.gene069457.t1 MTR_8g068620 74.107 112 29 0 175 286 2 113 2.19e-53 176
MS.gene069457.t1 MTR_1g050220 34.328 335 159 9 34 362 5 284 4.95e-52 179
MS.gene069457.t1 MTR_3g096070 32.938 337 192 7 29 362 11 316 4.30e-51 177
MS.gene069457.t1 MTR_8g068590 65.891 129 42 2 31 159 8 134 1.19e-48 165
MS.gene069457.t1 MTR_8g068760 66.929 127 40 2 33 159 18 142 1.44e-45 160
MS.gene069457.t1 MTR_8g068760 67.368 95 31 0 283 377 135 229 4.09e-43 153
MS.gene069457.t1 MTR_7g012020 38.189 254 146 6 13 264 8 252 6.00e-45 159
MS.gene069457.t1 MTR_5g074680 30.124 322 206 10 48 362 32 341 6.42e-44 159
MS.gene069457.t1 MTR_1g036510 40.506 237 131 5 31 262 33 264 3.20e-43 154
MS.gene069457.t1 MTR_5g074600 30.368 326 208 10 48 366 31 344 4.72e-43 157
MS.gene069457.t1 MTR_5g074580 30.675 326 207 11 48 366 32 345 1.22e-40 150
MS.gene069457.t1 MTR_3g096050 34.252 254 157 4 32 283 14 259 1.32e-39 145
MS.gene069457.t1 MTR_1g054470 57.692 130 29 4 381 510 30 133 7.82e-39 139
MS.gene069457.t1 MTR_4g038440 33.582 268 158 9 20 283 19 270 7.70e-38 140
MS.gene069457.t1 MTR_5g074540 30.061 326 191 11 48 366 31 326 3.20e-37 140
MS.gene069457.t1 MTR_1g076940 28.000 325 219 8 48 366 31 346 3.96e-36 138
MS.gene069457.t1 MTR_7g014570 27.301 326 211 10 48 366 31 337 2.79e-34 132
MS.gene069457.t1 MTR_4g079160 29.538 325 209 9 48 366 30 340 4.68e-34 132
MS.gene069457.t1 MTR_8g068580 61.628 86 33 0 292 377 44 129 8.15e-34 125
MS.gene069457.t1 MTR_4g088340 27.523 327 215 10 47 366 7 318 1.85e-33 130
MS.gene069457.t1 MTR_7g014510 26.606 327 217 10 48 366 31 342 2.22e-31 124
MS.gene069457.t1 MTR_4g088345 26.380 326 220 9 47 366 30 341 2.38e-31 124
MS.gene069457.t1 MTR_7g024500 25.836 329 221 9 43 366 25 335 3.97e-31 124
MS.gene069457.t1 MTR_7g024520 26.647 334 212 11 43 366 25 335 5.23e-31 123
MS.gene069457.t1 MTR_5g074610 38.961 154 90 2 216 366 159 311 1.08e-30 122
MS.gene069457.t1 MTR_4g088200 27.874 348 229 9 31 366 9 346 5.14e-30 121
MS.gene069457.t1 MTR_4g033150 29.333 300 198 8 48 340 31 323 1.77e-28 116
MS.gene069457.t1 MTR_4g033015 28.205 351 232 9 28 366 6 348 8.82e-28 114
MS.gene069457.t1 MTR_4g088190 28.775 351 231 9 28 366 6 349 9.50e-28 114
MS.gene069457.t1 MTR_4g033200 27.635 351 234 9 28 366 6 348 2.29e-26 110
MS.gene069457.t1 MTR_2g012700 38.318 107 65 1 415 520 13 119 6.48e-25 100
MS.gene069457.t1 MTR_4g033170 25.784 287 191 7 28 305 6 279 1.89e-24 105
MS.gene069457.t1 MTR_2g062330 39.655 116 65 3 406 520 27 138 4.76e-24 98.6
MS.gene069457.t1 MTR_4g033085 25.175 286 192 7 28 304 6 278 3.42e-22 98.6
MS.gene069457.t1 MTR_7g118310 45.918 98 37 3 179 260 2 99 6.06e-18 80.1
MS.gene069457.t1 MTR_1g076930 25.726 241 165 6 47 283 7 237 4.68e-17 81.3
MS.gene069457.t1 MTR_5g071400 74.468 47 10 2 381 427 15 59 3.86e-15 71.2
MS.gene069457.t1 MTR_0010s0310 34.043 94 59 1 421 511 147 240 8.32e-14 71.6
MS.gene069457.t1 MTR_6g477950 37.255 102 60 3 420 520 46 144 6.06e-13 70.1
MS.gene069457.t1 MTR_4g025570 41.463 82 44 3 285 364 122 201 8.36e-13 68.2
MS.gene069457.t1 MTR_5g071400 73.684 38 8 2 390 427 1 36 1.36e-11 60.5
MS.gene069457.t1 MTR_6g060290 28.934 197 111 8 1 195 1 170 1.97e-11 63.2
MS.gene069457.t1 MTR_5g078270 33.708 89 56 1 426 511 210 298 2.07e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069457.t1 AT5G54160 51.003 349 165 3 29 377 15 357 8.42e-126 372
MS.gene069457.t1 AT1G77520 42.740 365 202 5 20 380 19 380 2.42e-103 315
MS.gene069457.t1 AT1G77530 43.288 365 200 5 20 380 19 380 3.84e-91 284
MS.gene069457.t1 AT1G51990 39.946 373 207 6 23 392 5 363 1.09e-90 282
MS.gene069457.t1 AT1G51990 39.410 373 209 6 23 392 5 363 1.44e-89 279
MS.gene069457.t1 AT1G21100 41.509 371 203 7 14 377 6 369 1.31e-86 272
MS.gene069457.t1 AT1G21130 40.811 370 205 7 15 377 7 369 1.92e-86 271
MS.gene069457.t1 AT1G21120 40.811 370 205 7 15 377 7 369 6.33e-86 270
MS.gene069457.t1 AT1G21110 40.270 370 207 7 15 377 7 369 2.06e-85 269
MS.gene069457.t1 AT1G33030 42.216 334 183 6 36 366 9 335 2.22e-85 268
MS.gene069457.t1 AT1G21120 40.811 370 205 7 15 377 55 417 3.75e-85 270
MS.gene069457.t1 AT1G63140 41.530 366 205 6 20 380 19 380 1.12e-84 267
MS.gene069457.t1 AT1G63140 41.530 366 205 6 20 380 39 400 1.56e-84 267
MS.gene069457.t1 AT5G53810 42.560 336 188 4 47 377 39 374 3.13e-84 266
MS.gene069457.t1 AT1G76790 40.331 362 194 7 28 377 10 361 1.70e-79 253
MS.gene069457.t1 AT3G53140 36.212 359 200 8 13 362 2 340 9.48e-69 225
MS.gene069457.t1 AT5G37170 35.989 364 180 9 21 380 19 333 6.34e-66 217
MS.gene069457.t1 AT5G37170 41.277 235 134 3 148 380 1 233 2.55e-57 191
MS.gene069457.t1 AT1G62900 46.798 203 107 1 179 380 2 204 1.04e-56 188
MS.gene069457.t1 AT1G33030 43.028 251 133 6 36 283 9 252 7.87e-56 188
MS.gene069457.t1 AT1G33030 43.028 251 133 6 36 283 9 252 1.23e-55 188
MS.gene069457.t1 AT1G63140 42.910 268 145 5 20 283 39 302 7.48e-55 187
MS.gene069457.t1 AT5G37170 45.946 185 98 2 198 380 1 185 1.77e-54 182
MS.gene069457.t1 AT1G21130 40.364 275 151 6 15 283 7 274 1.28e-52 181
MS.gene069457.t1 AT1G77530 41.129 248 140 4 20 264 19 263 1.70e-46 164
MS.gene069457.t1 AT4G35160 32.239 335 199 10 49 368 45 366 4.10e-44 160
MS.gene069457.t1 AT1G63140 40.562 249 140 5 20 264 39 283 7.91e-43 154
MS.gene069457.t1 AT4G35150 38.350 206 116 4 172 368 106 309 8.17e-43 155

Find 100 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATCAACTATTCGAATTT+TGG 0.090848 6.4:+52872011 None:intergenic
TACAGGTAATGGGTGAAAAT+TGG 0.209416 6.4:+52872299 None:intergenic
TGCCTAAGAATGAAGTTTCT+TGG 0.237552 6.4:-52873546 MS.gene069457:CDS
ACTTCATTCTTAGGCATATT+AGG 0.238319 6.4:+52873553 None:intergenic
TTCAAAATACACTCATATTC+AGG 0.241239 6.4:-52874770 MS.gene069457:CDS
CCATCGACTTCTTCTTCATT+TGG 0.245009 6.4:+52872267 None:intergenic
GTGGATGGTTTGAGTTTGTT+AGG 0.256057 6.4:-52871921 MS.gene069457:CDS
TACTTTGAATTGCAATCTTC+CGG 0.260223 6.4:+52872049 None:intergenic
CATGCTATAGTGTCTCTTAA+AGG 0.269867 6.4:+52875999 None:intergenic
AATTCTGATGGTGTTTCATT+AGG 0.271958 6.4:-52875949 MS.gene069457:CDS
TTCCAAGAAACTTCATTCTT+AGG 0.283690 6.4:+52873544 None:intergenic
AATGAAACACCATCAGAATT+AGG 0.300158 6.4:+52875952 None:intergenic
TGATGGAAAGGTGATAGTTT+TGG 0.330917 6.4:-52873587 MS.gene069457:CDS
TACAACTATAGTCATGAAAA+AGG 0.338283 6.4:-52874878 MS.gene069457:CDS
TACATCCCTAAAACCTTTGT+AGG 0.347489 6.4:+52874846 None:intergenic
CTGCCATGAACCTTGTTAAA+TGG 0.347812 6.4:+52874970 None:intergenic
TATAGTGGATACTTCATGAT+TGG 0.348192 6.4:-52873663 MS.gene069457:intron
GCGAACTAAGCAAGAGTTCA+TGG 0.353760 6.4:-52873467 MS.gene069457:CDS
GGCTGTTGGACGGAGTGTTC+TGG 0.356206 6.4:-52872169 MS.gene069457:intron
CGAATAGTTGATGATGAAAC+TGG 0.373610 6.4:-52872003 MS.gene069457:CDS
GAATGTGAAGTTCGTGATAA+AGG 0.381874 6.4:-52871970 MS.gene069457:CDS
TAAGATCTTATCATTATTCA+AGG 0.384318 6.4:+52875915 None:intergenic
ACTTTGAATTGCAATCTTCC+GGG 0.386700 6.4:+52872050 None:intergenic
AAGTTCGTGATAAAGGAAAT+TGG 0.388847 6.4:-52871963 MS.gene069457:CDS
ACCTCTCGGCCGACGACATC+GGG 0.392167 6.4:-52876146 MS.gene069457:CDS
TAAGCAAGAGTTCATGGATA+TGG 0.393360 6.4:-52873461 MS.gene069457:CDS
TCATCATGACAATATCCATT+TGG 0.397171 6.4:+52873512 None:intergenic
TGAGATTCTTTGAATTAGAA+AGG 0.399297 6.4:+52876346 None:intergenic
CATCATGACAATATCCATTT+GGG 0.399737 6.4:+52873513 None:intergenic
ACAGGTAATGGGTGAAAATT+GGG 0.407202 6.4:+52872300 None:intergenic
TTTGCAGGAGTGGAGCATAT+TGG 0.422592 6.4:-52873978 MS.gene069457:intron
ACTCCATTTAACAAGGTTCA+TGG 0.426607 6.4:-52874973 MS.gene069457:CDS
CTACAATCTGCAATTGATCT+TGG 0.427901 6.4:-52876207 MS.gene069457:CDS
CCTCAATTGCAACTTTAAGC+TGG 0.429635 6.4:+52875004 None:intergenic
ACTATCACCTTTCCATCATC+AGG 0.437965 6.4:+52873592 None:intergenic
CAACATGCCCCTTCCTATCC+TGG 0.440979 6.4:-52874718 MS.gene069457:intron
TTGGAAATCTATCTCCCAAA+TGG 0.442242 6.4:-52873527 MS.gene069457:CDS
ATCATTATTCAAGGCAATCA+AGG 0.447063 6.4:+52875924 None:intergenic
CTCAATTGCAACTTTAAGCT+GGG 0.449587 6.4:+52875005 None:intergenic
ATGGATATGGCAACTAAAGC+TGG 0.453775 6.4:-52873448 MS.gene069457:CDS
TGCTTCTGGGTTATTAATGT+TGG 0.461922 6.4:+52876113 None:intergenic
TATGATGCCATTCCTGATGA+TGG 0.463654 6.4:-52873604 MS.gene069457:CDS
TACCTCTCGGCCGACGACAT+CGG 0.466857 6.4:-52876147 MS.gene069457:CDS
ATTAGTTCTGCTACGGCTGT+TGG 0.467637 6.4:-52872183 MS.gene069457:CDS
TTTGAAGTGTTGCAGAAAGC+TGG 0.474544 6.4:-52876180 MS.gene069457:CDS
GTGGATGTAGGTGGTGGCCT+TGG 0.475195 6.4:-52874814 MS.gene069457:CDS
TGGATGGTTTGAGTTTGTTA+GGG 0.477462 6.4:-52871920 MS.gene069457:CDS
GTTATTAATGTTGGAAAGAC+GGG 0.481912 6.4:+52876122 None:intergenic
TTGAACCTCAAGTCTAAGCT+TGG 0.492567 6.4:+52874931 None:intergenic
ATAAGATCTTATTAGCTAGC+TGG 0.499460 6.4:-52875903 MS.gene069457:intron
CCAGCTTAAAGTTGCAATTG+AGG 0.501181 6.4:-52875004 MS.gene069457:CDS
TCAAAATACACTCATATTCA+GGG 0.502739 6.4:-52874769 MS.gene069457:CDS
CTGCAGCCATGTAATTGATC+CGG 0.509939 6.4:-52872340 MS.gene069457:intron
TTTGAAATTGTGCAGATACT+GGG 0.510532 6.4:+52872244 None:intergenic
GCAACTAAAGCTGGATTTCG+TGG 0.514987 6.4:-52873439 MS.gene069457:CDS
ATTATCCAAGCTTAGACTTG+AGG 0.529630 6.4:-52874936 MS.gene069457:CDS
CGTGAAGGTCATACCAGGAT+AGG 0.531431 6.4:+52874705 None:intergenic
ATGGAGAAATACGTTGGTAG+TGG 0.538951 6.4:-52871940 MS.gene069457:CDS
GGTTATTAATGTTGGAAAGA+CGG 0.542521 6.4:+52876121 None:intergenic
TCATGTTAATGTTCATTCCA+AGG 0.544625 6.4:+52874797 None:intergenic
CCATGTAATTGATCCGGAGT+TGG 0.545499 6.4:-52872334 MS.gene069457:CDS
ACAATTAAGCAGTGAGTGAG+AGG 0.545594 6.4:+52876056 None:intergenic
GGCATCAATTCGTCCAACTC+CGG 0.549037 6.4:+52872321 None:intergenic
CCAACTCCGGATCAATTACA+TGG 0.550497 6.4:+52872334 None:intergenic
AGAAATACGTTGGTAGTGGA+TGG 0.551017 6.4:-52871936 MS.gene069457:CDS
CACCTTTCCATCATCAGGAA+TGG 0.553528 6.4:+52873597 None:intergenic
CTTAAAGTTGCAATTGAGGA+AGG 0.553880 6.4:-52875000 MS.gene069457:CDS
ATGATGACTCATTGTTCAGA+AGG 0.554029 6.4:-52873496 MS.gene069457:CDS
AATTGCAGATTGTAGTGCCA+TGG 0.558622 6.4:+52876215 None:intergenic
AATCTCTATTGCACTTCCCA+TGG 0.561784 6.4:-52876232 MS.gene069457:CDS
TCGTGATAAAGGAAATTGGA+TGG 0.565929 6.4:-52871959 MS.gene069457:CDS
GCAGGAGTGGAGCATATTGG+CGG 0.567541 6.4:-52873975 MS.gene069457:intron
TGAATGTGTAGCATATTCCC+CGG 0.571619 6.4:-52872068 MS.gene069457:intron
TCATTATTCAAGGCAATCAA+GGG 0.575942 6.4:+52875925 None:intergenic
GCATAGTATTAGTTCTGCTA+CGG 0.580120 6.4:-52872190 MS.gene069457:CDS
AAGGTTCTTGAATCCTACAA+AGG 0.582215 6.4:-52874859 MS.gene069457:CDS
GTCTCTTAAAGGAATTGAGG+TGG 0.583341 6.4:+52876010 None:intergenic
AGGGCAAAAGAACTCAAAGA+AGG 0.584629 6.4:-52871901 MS.gene069457:CDS
ATTGCAGATTGTAGTGCCAT+GGG 0.593277 6.4:+52876216 None:intergenic
GATACAAATAATTTGTGTGG+AGG 0.593345 6.4:+52871850 None:intergenic
AGTGTCTCTTAAAGGAATTG+AGG 0.593730 6.4:+52876007 None:intergenic
GTTCTGCTACGGCTGTTGGA+CGG 0.598239 6.4:-52872179 MS.gene069457:CDS
CTTTGAATTGCAATCTTCCG+GGG 0.600541 6.4:+52872051 None:intergenic
AAGGTCATACCAGGATAGGA+AGG 0.602588 6.4:+52874709 None:intergenic
AATTGGATGGAGAAATACGT+TGG 0.604235 6.4:-52871946 MS.gene069457:CDS
ACTGATACAAATAATTTGTG+TGG 0.607437 6.4:+52871847 None:intergenic
TGGTAAAGGTGCTTACCTCT+CGG 0.612930 6.4:-52876160 MS.gene069457:CDS
GGTCATACCAGGATAGGAAG+GGG 0.620341 6.4:+52874711 None:intergenic
AGCTTGGATAATCAAAGAGA+TGG 0.623607 6.4:+52874947 None:intergenic
AAAGTTGCAATTGAGGAAGG+AGG 0.625322 6.4:-52874997 MS.gene069457:CDS
TGCCATTCCTGATGATGGAA+AGG 0.628022 6.4:-52873599 MS.gene069457:CDS
AGGAGGTACTCCATTTAACA+AGG 0.632791 6.4:-52874980 MS.gene069457:CDS
GTGTTGCAGAAAGCTGGTAA+AGG 0.632798 6.4:-52876174 MS.gene069457:CDS
AGGTCATACCAGGATAGGAA+GGG 0.634526 6.4:+52874710 None:intergenic
AAGACGGGACCCGATGTCGT+CGG 0.636177 6.4:+52876137 None:intergenic
AGACTTGTGGATGTAGGTGG+TGG 0.653419 6.4:-52874820 MS.gene069457:CDS
CCAAATGAAGAAGAAGTCGA+TGG 0.658231 6.4:-52872267 MS.gene069457:CDS
ACCCGATGTCGTCGGCCGAG+AGG 0.660593 6.4:+52876145 None:intergenic
GGGGCATGTTGTATGACATG+AGG 0.663809 6.4:+52874730 None:intergenic
AAAAGACTTGTGGATGTAGG+TGG 0.678488 6.4:-52874823 MS.gene069457:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTTAAAAATAAAAAT+TGG + chr6.4:52873791-52873810 None:intergenic 0.0%
!!! AAAAAAAATTATATATTTTA+TGG - chr6.4:52875380-52875399 MS.gene069457:intron 0.0%
!! AATAAAACTAAGAAATTAAA+CGG - chr6.4:52872522-52872541 MS.gene069457:intron 10.0%
!! ATAATAAACATTTAATTCTA+AGG - chr6.4:52874355-52874374 MS.gene069457:intron 10.0%
!! ATTGTTTAATATTTAATCAA+TGG + chr6.4:52875058-52875077 None:intergenic 10.0%
!! CAAATTCAAATAAAATTATT+TGG - chr6.4:52872980-52872999 MS.gene069457:intron 10.0%
!! TAATATATTCATCTTTAATT+AGG - chr6.4:52873162-52873181 MS.gene069457:intron 10.0%
!! TATACCAAAAAAAAAAAAAA+AGG + chr6.4:52872479-52872498 None:intergenic 10.0%
!! TTAAATATTAAACAATTCAA+TGG - chr6.4:52875062-52875081 MS.gene069457:intron 10.0%
!!! TAATTTTAATTACTTTAATG+TGG + chr6.4:52875159-52875178 None:intergenic 10.0%
!!! TATTTTTTTGGTAAATTTTT+AGG - chr6.4:52872714-52872733 MS.gene069457:intron 10.0%
!!! TTAAATTATTGCAATTTTTT+TGG + chr6.4:52874053-52874072 None:intergenic 10.0%
!!! TTAACTAAATTTTTATATAG+TGG - chr6.4:52874513-52874532 MS.gene069457:intron 10.0%
!!! TTTTACTTTTTTTTTTTTGA+AGG + chr6.4:52874179-52874198 None:intergenic 10.0%
!!! TTTTTTTTTTTGGTATAAAA+AGG - chr6.4:52872482-52872501 MS.gene069457:intron 10.0%
!! CAATTTCAAAAATTTCAAAA+CGG - chr6.4:52875960-52875979 MS.gene069457:CDS 15.0%
!! TTTAATTACATTAATGTGAA+AGG + chr6.4:52875198-52875217 None:intergenic 15.0%
!!! AGTTTTAATTTTATTTTTGC+TGG - chr6.4:52876047-52876066 MS.gene069457:CDS 15.0%
!!! ATATTACTTTTTTTTTTCGA+AGG - chr6.4:52875320-52875339 MS.gene069457:intron 15.0%
!!! GAAATTTTACAATATAAGAA+TGG + chr6.4:52873677-52873696 None:intergenic 15.0%
!!! TATTTTAAATGTTGCATTTT+GGG - chr6.4:52872426-52872445 MS.gene069457:intron 15.0%
!!! TTATTTTAAATGTTGCATTT+TGG - chr6.4:52872425-52872444 MS.gene069457:intron 15.0%
!!! TTGATTATTGTTTTTGTTTA+AGG - chr6.4:52874952-52874971 MS.gene069457:CDS 15.0%
!!! TTTTTGTTTTTTTAATCTTC+TGG - chr6.4:52875805-52875824 MS.gene069457:intron 15.0%
!! ATATAGTTGTATATAGAACA+TGG + chr6.4:52874486-52874505 None:intergenic 20.0%
!! ATATATCTAATATTGTTTGC+AGG - chr6.4:52874198-52874217 MS.gene069457:intron 20.0%
!! CATATTAGATGTGTTTAATA+TGG + chr6.4:52873750-52873769 None:intergenic 20.0%
!! TAAGATCTTATCATTATTCA+AGG + chr6.4:52872279-52872298 None:intergenic 20.0%
!! TTAAAATTTCTTCTTTGTTG+TGG + chr6.4:52873012-52873031 None:intergenic 20.0%
!! TTTAATTACTTTAATGTGGA+AGG + chr6.4:52875155-52875174 None:intergenic 20.0%
!! TTTAGCTAAGTTTAAATATG+TGG + chr6.4:52872687-52872706 None:intergenic 20.0%
!!! AATGTTGCATCTATAATTTT+TGG - chr6.4:52874786-52874805 MS.gene069457:CDS 20.0%
!!! ACCTTTTAAAAATGGTTTAA+AGG + chr6.4:52873727-52873746 None:intergenic 20.0%
!!! CTTAGTTTTATTTTCTCTTT+GGG + chr6.4:52872514-52872533 None:intergenic 20.0%
!!! GAGTCCTTTTTTTTTTTTTT+TGG - chr6.4:52872472-52872491 MS.gene069457:intron 20.0%
!!! TAAAATTTCTTCTTTGTTGT+GGG + chr6.4:52873011-52873030 None:intergenic 20.0%
!!! TAATATGGACCTTTTAAAAA+TGG + chr6.4:52873735-52873754 None:intergenic 20.0%
!!! TACTTTTTTTTTTTTGAAGG+AGG + chr6.4:52874176-52874195 None:intergenic 20.0%
!!! TCAAACATGAGTAAATTTTA+TGG - chr6.4:52874008-52874027 MS.gene069457:intron 20.0%
!!! TCTTAGTTTTATTTTCTCTT+TGG + chr6.4:52872515-52872534 None:intergenic 20.0%
!!! TTGAATGAATTTTGCATATA+TGG + chr6.4:52872768-52872787 None:intergenic 20.0%
! AAACAAACACTTTCAAAAAG+TGG + chr6.4:52873831-52873850 None:intergenic 25.0%
! ACCTATAACTTTCATATGAA+TGG - chr6.4:52874891-52874910 MS.gene069457:CDS 25.0%
! ATGTTTATTATTCCATCAAG+AGG + chr6.4:52874346-52874365 None:intergenic 25.0%
! CTTAAAATAGCCTTCTAAAT+GGG + chr6.4:52875680-52875699 None:intergenic 25.0%
! GAACGTTGTAATATTTCAAT+CGG - chr6.4:52874974-52874993 MS.gene069457:CDS 25.0%
! TAAATCTACAAACTGCAATA+TGG - chr6.4:52874821-52874840 MS.gene069457:CDS 25.0%
! TACAACTATAGTCATGAAAA+AGG - chr6.4:52873313-52873332 MS.gene069457:intron 25.0%
! TATGGAGTTAAAACAAACTA+AGG - chr6.4:52874026-52874045 MS.gene069457:intron 25.0%
! TCAAAATACACTCATATTCA+GGG - chr6.4:52873422-52873441 MS.gene069457:CDS 25.0%
! TCCATTCATATGAAAGTTAT+AGG + chr6.4:52874895-52874914 None:intergenic 25.0%
! TGAGATTCTTTGAATTAGAA+AGG + chr6.4:52871848-52871867 None:intergenic 25.0%
! TTCAAAATACACTCATATTC+AGG - chr6.4:52873421-52873440 MS.gene069457:CDS 25.0%
!! ACTGATACAAATAATTTGTG+TGG + chr6.4:52876347-52876366 None:intergenic 25.0%
!! ATCATCAACTATTCGAATTT+TGG + chr6.4:52876183-52876202 None:intergenic 25.0%
!! TGTCTAAACCTTTTAGATTT+AGG - chr6.4:52873097-52873116 MS.gene069457:intron 25.0%
!!! AAGATTGGGTTTTTAGTTAT+GGG - chr6.4:52875629-52875648 MS.gene069457:intron 25.0%
!!! AGGTATCTTGAATTTTGATT+GGG - chr6.4:52872734-52872753 MS.gene069457:intron 25.0%
!!! CATTTAGAAGGCTATTTTAA+GGG - chr6.4:52875679-52875698 MS.gene069457:intron 25.0%
!!! GCCTTTAAACCATTTTTAAA+AGG - chr6.4:52873723-52873742 MS.gene069457:intron 25.0%
!!! TAAGATTGGGTTTTTAGTTA+TGG - chr6.4:52875628-52875647 MS.gene069457:intron 25.0%
!!! TAGGTATCTTGAATTTTGAT+TGG - chr6.4:52872733-52872752 MS.gene069457:intron 25.0%
AAAAAGACTCATCATTGAAC+CGG + chr6.4:52873615-52873634 None:intergenic 30.0%
AAAATGCATCTTCTTTGGTA+TGG - chr6.4:52875013-52875032 MS.gene069457:intron 30.0%
AAGATATATATGTGAGCAGA+AGG + chr6.4:52872326-52872345 None:intergenic 30.0%
AAGTTCGTGATAAAGGAAAT+TGG - chr6.4:52876228-52876247 MS.gene069457:CDS 30.0%
AATGAAACACCATCAGAATT+AGG + chr6.4:52872242-52872261 None:intergenic 30.0%
ACTCGAAAAATACTTACTTG+GGG + chr6.4:52873128-52873147 None:intergenic 30.0%
ACTTCATTCTTAGGCATATT+AGG + chr6.4:52874641-52874660 None:intergenic 30.0%
ATAAAAATGGCATCACAACT+AGG + chr6.4:52874261-52874280 None:intergenic 30.0%
ATAAGATCTTATTAGCTAGC+TGG - chr6.4:52872288-52872307 MS.gene069457:CDS 30.0%
ATAATGCTACCATGAAATGT+GGG + chr6.4:52872863-52872882 None:intergenic 30.0%
ATATACATACCCACATTTCA+TGG - chr6.4:52872851-52872870 MS.gene069457:intron 30.0%
ATCATTATTCAAGGCAATCA+AGG + chr6.4:52872270-52872289 None:intergenic 30.0%
CATCATGACAATATCCATTT+GGG + chr6.4:52874681-52874700 None:intergenic 30.0%
CCTTAAAATAGCCTTCTAAA+TGG + chr6.4:52875681-52875700 None:intergenic 30.0%
CGAGTTGTTTAATATTGATC+CGG - chr6.4:52873593-52873612 MS.gene069457:CDS 30.0%
CTCCAATACATACCATATAA+GGG + chr6.4:52873945-52873964 None:intergenic 30.0%
CTTATATGGTATGTATTGGA+GGG - chr6.4:52873944-52873963 MS.gene069457:CDS 30.0%
CTTCATCGTTCATTGTTAAA+GGG + chr6.4:52875487-52875506 None:intergenic 30.0%
GAATGAGTACATGAATATGT+AGG + chr6.4:52873990-52874009 None:intergenic 30.0%
GACTCGAAAAATACTTACTT+GGG + chr6.4:52873129-52873148 None:intergenic 30.0%
GGTTATTAATGTTGGAAAGA+CGG + chr6.4:52872073-52872092 None:intergenic 30.0%
GTTATTAATGTTGGAAAGAC+GGG + chr6.4:52872072-52872091 None:intergenic 30.0%
TACACAATCGTTGTATGAAT+AGG - chr6.4:52872560-52872579 MS.gene069457:intron 30.0%
TACTTTGAATTGCAATCTTC+CGG + chr6.4:52876145-52876164 None:intergenic 30.0%
TATTGTTCATGGTTGTAGAA+AGG - chr6.4:52874301-52874320 MS.gene069457:intron 30.0%
TCATCATGACAATATCCATT+TGG + chr6.4:52874682-52874701 None:intergenic 30.0%
TCATGTTAATGTTCATTCCA+AGG + chr6.4:52873397-52873416 None:intergenic 30.0%
TCATTATTCAAGGCAATCAA+GGG + chr6.4:52872269-52872288 None:intergenic 30.0%
TCTTCATCGTTCATTGTTAA+AGG + chr6.4:52875488-52875507 None:intergenic 30.0%
TTAACAATGAACGATGAAGA+TGG - chr6.4:52875488-52875507 MS.gene069457:intron 30.0%
TTCATCGTTCATTGTTAAAG+GGG + chr6.4:52875486-52875505 None:intergenic 30.0%
TTCCAAGAAACTTCATTCTT+AGG + chr6.4:52874650-52874669 None:intergenic 30.0%
! AAAACGGTGATCATACTTTT+TGG - chr6.4:52875976-52875995 MS.gene069457:CDS 30.0%
! AATTCTGATGGTGTTTCATT+AGG - chr6.4:52872242-52872261 MS.gene069457:CDS 30.0%
! ACGATTGTGTACGTAATTTT+TGG + chr6.4:52872551-52872570 None:intergenic 30.0%
! ATACCAAAGAAGATGCATTT+TGG + chr6.4:52875014-52875033 None:intergenic 30.0%
! CTAACATTTTGAATGCTTCT+GGG + chr6.4:52872094-52872113 None:intergenic 30.0%
! GATACAAATAATTTGTGTGG+AGG + chr6.4:52876344-52876363 None:intergenic 30.0%
! TCTAACATTTTGAATGCTTC+TGG + chr6.4:52872095-52872114 None:intergenic 30.0%
! TGAATCCTACAAAGGTTTTA+GGG - chr6.4:52873340-52873359 MS.gene069457:intron 30.0%
! TTGAATCCTACAAAGGTTTT+AGG - chr6.4:52873339-52873358 MS.gene069457:intron 30.0%
! TTTGAAATTGTGCAGATACT+GGG + chr6.4:52875950-52875969 None:intergenic 30.0%
!! CCATTTAGAAGGCTATTTTA+AGG - chr6.4:52875678-52875697 MS.gene069457:intron 30.0%
!! TATAGTGGATACTTCATGAT+TGG - chr6.4:52874528-52874547 MS.gene069457:intron 30.0%
!! TATTCGTTTTAGCCCTTATA+TGG - chr6.4:52873930-52873949 MS.gene069457:CDS 30.0%
!!! TTGTGATGCCATTTTTATGA+AGG - chr6.4:52874263-52874282 MS.gene069457:intron 30.0%
!!! TTTTGAAATTGTGCAGATAC+TGG + chr6.4:52875951-52875970 None:intergenic 30.0%
!!! TTTTTTGCTCCTAATTCTGA+TGG - chr6.4:52872230-52872249 MS.gene069457:CDS 30.0%
!!! TTTTTTTGAAGGAGGAATGA+TGG + chr6.4:52874168-52874187 None:intergenic 30.0%
AAATGTCTTCTTCTAGTAGC+AGG - chr6.4:52875761-52875780 MS.gene069457:intron 35.0%
AAGAATCGGGTCATTTGATT+GGG - chr6.4:52875581-52875600 MS.gene069457:intron 35.0%
AAGGTTCTTGAATCCTACAA+AGG - chr6.4:52873332-52873351 MS.gene069457:intron 35.0%
AATTGGATGGAGAAATACGT+TGG - chr6.4:52876245-52876264 MS.gene069457:CDS 35.0%
ACGAAGACAAGATGAAGAAT+CGG - chr6.4:52875567-52875586 MS.gene069457:intron 35.0%
ACGTCTGAGAAGAAAATTCT+AGG - chr6.4:52875726-52875745 MS.gene069457:intron 35.0%
ACTCCATTTAACAAGGTTCA+TGG - chr6.4:52873218-52873237 MS.gene069457:intron 35.0%
ACTTTGAATTGCAATCTTCC+GGG + chr6.4:52876144-52876163 None:intergenic 35.0%
AGCCCTTATATGGTATGTAT+TGG - chr6.4:52873940-52873959 MS.gene069457:CDS 35.0%
AGCTTGGATAATCAAAGAGA+TGG + chr6.4:52873247-52873266 None:intergenic 35.0%
AGTGTCTCTTAAAGGAATTG+AGG + chr6.4:52872187-52872206 None:intergenic 35.0%
AGTTGTAGTAGTAGTAGTGT+AGG + chr6.4:52872354-52872373 None:intergenic 35.0%
ATGATGACTCATTGTTCAGA+AGG - chr6.4:52874695-52874714 MS.gene069457:intron 35.0%
ATGCCAAAATGCATCTTCTT+TGG - chr6.4:52875008-52875027 MS.gene069457:CDS 35.0%
ATTATCCAAGCTTAGACTTG+AGG - chr6.4:52873255-52873274 MS.gene069457:intron 35.0%
CAATCTTATTGCCGTCAAAA+CGG + chr6.4:52875616-52875635 None:intergenic 35.0%
CATAATGCTACCATGAAATG+TGG + chr6.4:52872864-52872883 None:intergenic 35.0%
CATGCTATAGTGTCTCTTAA+AGG + chr6.4:52872195-52872214 None:intergenic 35.0%
CCTCCAATACATACCATATA+AGG + chr6.4:52873946-52873965 None:intergenic 35.0%
CCTTATATGGTATGTATTGG+AGG - chr6.4:52873943-52873962 MS.gene069457:CDS 35.0%
CGACTCGAAAAATACTTACT+TGG + chr6.4:52873130-52873149 None:intergenic 35.0%
CGTCTGAGAAGAAAATTCTA+GGG - chr6.4:52875727-52875746 MS.gene069457:intron 35.0%
CGTTGTAATATTTCAATCGG+TGG - chr6.4:52874977-52874996 MS.gene069457:CDS 35.0%
CTACAATCTGCAATTGATCT+TGG - chr6.4:52871984-52872003 MS.gene069457:CDS 35.0%
CTCAATTGCAACTTTAAGCT+GGG + chr6.4:52873189-52873208 None:intergenic 35.0%
CTTAAAGTTGCAATTGAGGA+AGG - chr6.4:52873191-52873210 MS.gene069457:intron 35.0%
GAATAGGTAGTTTGACTCAT+TGG - chr6.4:52872576-52872595 MS.gene069457:intron 35.0%
GAATGTGAAGTTCGTGATAA+AGG - chr6.4:52876221-52876240 MS.gene069457:CDS 35.0%
GAGAACAAATAACCTCTTGA+TGG - chr6.4:52874331-52874350 MS.gene069457:intron 35.0%
GGGACAAACCTAAATCTAAA+AGG + chr6.4:52873108-52873127 None:intergenic 35.0%
GTAAAAAGACTTGTGGATGT+AGG - chr6.4:52873365-52873384 MS.gene069457:intron 35.0%
TAAGCAAGAGTTCATGGATA+TGG - chr6.4:52874730-52874749 MS.gene069457:CDS 35.0%
TACATCCCTAAAACCTTTGT+AGG + chr6.4:52873348-52873367 None:intergenic 35.0%
TAGGGATGTAAAAAGACTTG+TGG - chr6.4:52873358-52873377 MS.gene069457:intron 35.0%
TCCACTCACCTTCATAAAAA+TGG + chr6.4:52874274-52874293 None:intergenic 35.0%
TCGTGATAAAGGAAATTGGA+TGG - chr6.4:52876232-52876251 MS.gene069457:CDS 35.0%
TCTAATATTGTTTGCAGGAG+TGG - chr6.4:52874203-52874222 MS.gene069457:intron 35.0%
TGCCTAAGAATGAAGTTTCT+TGG - chr6.4:52874645-52874664 MS.gene069457:intron 35.0%
TGCTTCTGGGTTATTAATGT+TGG + chr6.4:52872081-52872100 None:intergenic 35.0%
TTAAGGGTTGTTGTGAATCT+TGG - chr6.4:52875695-52875714 MS.gene069457:intron 35.0%
TTGGAAATCTATCTCCCAAA+TGG - chr6.4:52874664-52874683 MS.gene069457:intron 35.0%
! GATTTTCGTCTACAGGTAAT+GGG + chr6.4:52875905-52875924 None:intergenic 35.0%
! TCATTTGGATTTTCGTCTAC+AGG + chr6.4:52875912-52875931 None:intergenic 35.0%
! TGATGGAAAGGTGATAGTTT+TGG - chr6.4:52874604-52874623 MS.gene069457:intron 35.0%
! TGGATGTGCTTTATTGTTCA+TGG - chr6.4:52874290-52874309 MS.gene069457:intron 35.0%
!! ACAGGTAATGGGTGAAAATT+GGG + chr6.4:52875894-52875913 None:intergenic 35.0%
!! ATGTTGCATTTTGGGAGAAA+TGG - chr6.4:52872434-52872453 MS.gene069457:intron 35.0%
!! CGAATAGTTGATGATGAAAC+TGG - chr6.4:52876188-52876207 MS.gene069457:CDS 35.0%
!! GCATAGTATTAGTTCTGCTA+CGG - chr6.4:52876001-52876020 MS.gene069457:CDS 35.0%
!! GTTTTGACGGCAATAAGATT+GGG - chr6.4:52875615-52875634 MS.gene069457:intron 35.0%
!! TACAGGTAATGGGTGAAAAT+TGG + chr6.4:52875895-52875914 None:intergenic 35.0%
!! TGGATGGTTTGAGTTTGTTA+GGG - chr6.4:52876271-52876290 MS.gene069457:CDS 35.0%
AAAAGACTTGTGGATGTAGG+TGG - chr6.4:52873368-52873387 MS.gene069457:intron 40.0%
AAAGTTGCAATTGAGGAAGG+AGG - chr6.4:52873194-52873213 MS.gene069457:intron 40.0%
AATCTCTATTGCACTTCCCA+TGG - chr6.4:52871959-52871978 MS.gene069457:CDS 40.0%
AATTGCAGATTGTAGTGCCA+TGG + chr6.4:52871979-52871998 None:intergenic 40.0%
ACAATTAAGCAGTGAGTGAG+AGG + chr6.4:52872138-52872157 None:intergenic 40.0%
ACATGTATTCCTATGCGTGA+AGG + chr6.4:52873504-52873523 None:intergenic 40.0%
ACTATCACCTTTCCATCATC+AGG + chr6.4:52874602-52874621 None:intergenic 40.0%
AGGGCAAAAGAACTCAAAGA+AGG - chr6.4:52876290-52876309 MS.gene069457:CDS 40.0%
ATACCTGCTATTCAAGTACC+AGG + chr6.4:52875101-52875120 None:intergenic 40.0%
ATGGATATGGCAACTAAAGC+TGG - chr6.4:52874743-52874762 MS.gene069457:CDS 40.0%
ATGGTGATCGATGAAATGAG+CGG - chr6.4:52875507-52875526 MS.gene069457:intron 40.0%
ATGGTTGTAGAAAGGTAGCT+AGG - chr6.4:52874309-52874328 MS.gene069457:intron 40.0%
ATTGCAGATTGTAGTGCCAT+GGG + chr6.4:52871978-52871997 None:intergenic 40.0%
CCAAATGAAGAAGAAGTCGA+TGG - chr6.4:52875924-52875943 MS.gene069457:CDS 40.0%
CCAGCTTAAAGTTGCAATTG+AGG - chr6.4:52873187-52873206 MS.gene069457:intron 40.0%
CCTCAATTGCAACTTTAAGC+TGG + chr6.4:52873190-52873209 None:intergenic 40.0%
CGAAGACAAGATGAAGAATC+GGG - chr6.4:52875568-52875587 MS.gene069457:intron 40.0%
CTGCCATGAACCTTGTTAAA+TGG + chr6.4:52873224-52873243 None:intergenic 40.0%
CTTTGAATTGCAATCTTCCG+GGG + chr6.4:52876143-52876162 None:intergenic 40.0%
CTTTGGTATGGTGCACAAAT+AGG - chr6.4:52875025-52875044 MS.gene069457:intron 40.0%
GAAGAATCGGGTCATTTGAT+TGG - chr6.4:52875580-52875599 MS.gene069457:intron 40.0%
GGAGCAAAAAACTTTGCAAC+AGG + chr6.4:52872221-52872240 None:intergenic 40.0%
GTCTCTTAAAGGAATTGAGG+TGG + chr6.4:52872184-52872203 None:intergenic 40.0%
TATGATGCCATTCCTGATGA+TGG - chr6.4:52874587-52874606 MS.gene069457:intron 40.0%
TGAATGTGTAGCATATTCCC+CGG - chr6.4:52876123-52876142 MS.gene069457:CDS 40.0%
TGTCTTCGTCCATCTCAAAA+CGG + chr6.4:52875556-52875575 None:intergenic 40.0%
TTATTGCCGTCAAAACGGTT+CGG + chr6.4:52875611-52875630 None:intergenic 40.0%
TTGAACCTCAAGTCTAAGCT+TGG + chr6.4:52873263-52873282 None:intergenic 40.0%
TTGCTGGATTATTTGCGCAT+GGG - chr6.4:52876063-52876082 MS.gene069457:CDS 40.0%
TTTGCTGGATTATTTGCGCA+TGG - chr6.4:52876062-52876081 MS.gene069457:CDS 40.0%
! ATGGAGAAATACGTTGGTAG+TGG - chr6.4:52876251-52876270 MS.gene069457:CDS 40.0%
! GGATTTTCGTCTACAGGTAA+TGG + chr6.4:52875906-52875925 None:intergenic 40.0%
! GTGGATGGTTTGAGTTTGTT+AGG - chr6.4:52876270-52876289 MS.gene069457:CDS 40.0%
!! AGAAATACGTTGGTAGTGGA+TGG - chr6.4:52876255-52876274 MS.gene069457:CDS 40.0%
!! AGGAGGTACTCCATTTAACA+AGG - chr6.4:52873211-52873230 MS.gene069457:intron 40.0%
!! CCATCGACTTCTTCTTCATT+TGG + chr6.4:52875927-52875946 None:intergenic 40.0%
!! CGTTTTGACGGCAATAAGAT+TGG - chr6.4:52875614-52875633 MS.gene069457:intron 40.0%
!! TTTGAAGTGTTGCAGAAAGC+TGG - chr6.4:52872011-52872030 MS.gene069457:CDS 40.0%
!!! CTTGAATTTTGATTGGGTGC+TGG - chr6.4:52872740-52872759 MS.gene069457:intron 40.0%
!!! GCCATTTTTATGAAGGTGAG+TGG - chr6.4:52874270-52874289 MS.gene069457:intron 40.0%
!!! TGGAAAGGTGATAGTTTTGG+AGG - chr6.4:52874607-52874626 MS.gene069457:intron 40.0%
!!! TTGAGGTGGTTTTGTTCATG+AGG + chr6.4:52872170-52872189 None:intergenic 40.0%
!!! TTGGGTTTTTAGTTATGGGC+CGG - chr6.4:52875633-52875652 MS.gene069457:intron 40.0%
AAGGTCATACCAGGATAGGA+AGG + chr6.4:52873485-52873504 None:intergenic 45.0%
AAGTACCAGGTGTGCAATCT+TGG + chr6.4:52875088-52875107 None:intergenic 45.0%
ACACCTGGTACTTGAATAGC+AGG - chr6.4:52875095-52875114 MS.gene069457:intron 45.0%
AGGTCATACCAGGATAGGAA+GGG + chr6.4:52873484-52873503 None:intergenic 45.0%
ATGGGCCGGGAAAAAATGAT+CGG - chr6.4:52875647-52875666 MS.gene069457:intron 45.0%
CACCTTTCCATCATCAGGAA+TGG + chr6.4:52874597-52874616 None:intergenic 45.0%
CCAACTCCGGATCAATTACA+TGG + chr6.4:52875860-52875879 None:intergenic 45.0%
CCATGTAATTGATCCGGAGT+TGG - chr6.4:52875857-52875876 MS.gene069457:intron 45.0%
CTGCAGCCATGTAATTGATC+CGG - chr6.4:52875851-52875870 MS.gene069457:intron 45.0%
GCAACTAAAGCTGGATTTCG+TGG - chr6.4:52874752-52874771 MS.gene069457:CDS 45.0%
GCGAACTAAGCAAGAGTTCA+TGG - chr6.4:52874724-52874743 MS.gene069457:CDS 45.0%
GGGAAAAAATGATCGGGTCA+CGG - chr6.4:52875654-52875673 MS.gene069457:intron 45.0%
GTGTTGCAGAAAGCTGGTAA+AGG - chr6.4:52872017-52872036 MS.gene069457:CDS 45.0%
TTTGCAGGAGTGGAGCATAT+TGG - chr6.4:52874213-52874232 MS.gene069457:intron 45.0%
! GGTTTTCCGAACCGTTTTGA+CGG - chr6.4:52875602-52875621 MS.gene069457:intron 45.0%
!! ATTAGTTCTGCTACGGCTGT+TGG - chr6.4:52876008-52876027 MS.gene069457:CDS 45.0%
!! TGCCATTCCTGATGATGGAA+AGG - chr6.4:52874592-52874611 MS.gene069457:intron 45.0%
!! TGGTAAAGGTGCTTACCTCT+CGG - chr6.4:52872031-52872050 MS.gene069457:CDS 45.0%
!!! GGTGGTTTTGTTCATGAGGA+AGG + chr6.4:52872166-52872185 None:intergenic 45.0%
!!! GTGACCCGATCATTTTTTCC+CGG + chr6.4:52875655-52875674 None:intergenic 45.0%
!!! TGGGTTTTTAGTTATGGGCC+GGG - chr6.4:52875634-52875653 MS.gene069457:intron 45.0%
!! AAATTCAAATAAAATTATTT+GGG - chr6.4:52872981-52873000 MS.gene069457:intron 5.0%
!! ACTATTATTAAAAAAAAATT+AGG - chr6.4:52872384-52872403 MS.gene069457:intron 5.0%
!! CTATTATTAAAAAAAAATTA+GGG - chr6.4:52872385-52872404 MS.gene069457:intron 5.0%
!! TATTATTAAAAAAAAATTAG+GGG - chr6.4:52872386-52872405 MS.gene069457:intron 5.0%
!!! CTAAAAATTTAATATTTTTT+TGG - chr6.4:52872702-52872721 MS.gene069457:intron 5.0%
AATGGCCAAGATTGCACACC+TGG - chr6.4:52875080-52875099 MS.gene069457:intron 50.0%
AGACTTGTGGATGTAGGTGG+TGG - chr6.4:52873371-52873390 MS.gene069457:intron 50.0%
CGTGAAGGTCATACCAGGAT+AGG + chr6.4:52873489-52873508 None:intergenic 50.0%
CTATGCGTGAAGGTCATACC+AGG + chr6.4:52873494-52873513 None:intergenic 50.0%
CTGGATTATTTGCGCATGGG+TGG - chr6.4:52876066-52876085 MS.gene069457:CDS 50.0%
CTGGTATGACCTTCACGCAT+AGG - chr6.4:52873492-52873511 MS.gene069457:CDS 50.0%
GATTATTTGCGCATGGGTGG+TGG - chr6.4:52876069-52876088 MS.gene069457:CDS 50.0%
GGCATCAATTCGTCCAACTC+CGG + chr6.4:52875873-52875892 None:intergenic 50.0%
GGGGCATGTTGTATGACATG+AGG + chr6.4:52873464-52873483 None:intergenic 50.0%
GGTCATACCAGGATAGGAAG+GGG + chr6.4:52873483-52873502 None:intergenic 50.0%
GTGATCGATGAAATGAGCGG+CGG - chr6.4:52875510-52875529 MS.gene069457:intron 50.0%
TGGGCCGGGAAAAAATGATC+GGG - chr6.4:52875648-52875667 MS.gene069457:intron 50.0%
ATGAAATGAGCGGCGGATGC+AGG - chr6.4:52875517-52875536 MS.gene069457:intron 55.0%
CAACATGCCCCTTCCTATCC+TGG - chr6.4:52873473-52873492 MS.gene069457:CDS 55.0%
CCATCTCAAAACGGCGACGA+TGG + chr6.4:52875547-52875566 None:intergenic 55.0%
GCAGGAGTGGAGCATATTGG+CGG - chr6.4:52874216-52874235 MS.gene069457:intron 55.0%
GTTCTGCTACGGCTGTTGGA+CGG - chr6.4:52876012-52876031 MS.gene069457:CDS 55.0%
!!! CCATCGTCGCCGTTTTGAGA+TGG - chr6.4:52875544-52875563 MS.gene069457:intron 55.0%
AAGACGGGACCCGATGTCGT+CGG + chr6.4:52872057-52872076 None:intergenic 60.0%
CGGGTCACGGCCCATTTAGA+AGG - chr6.4:52875667-52875686 MS.gene069457:intron 60.0%
TACCTCTCGGCCGACGACAT+CGG - chr6.4:52872044-52872063 MS.gene069457:CDS 60.0%
! GGCTGTTGGACGGAGTGTTC+TGG - chr6.4:52876022-52876041 MS.gene069457:CDS 60.0%
! GTGGATGTAGGTGGTGGCCT+TGG - chr6.4:52873377-52873396 MS.gene069457:intron 60.0%
ACCTCTCGGCCGACGACATC+GGG - chr6.4:52872045-52872064 MS.gene069457:CDS 65.0%
! GCGCATGGGTGGTGGCTTTG+TGG - chr6.4:52876077-52876096 MS.gene069457:CDS 65.0%
ACCCGATGTCGTCGGCCGAG+AGG + chr6.4:52872049-52872068 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 52871837 52876376 52871837 ID=MS.gene069457
chr6.4 mRNA 52871837 52876376 52871837 ID=MS.gene069457.t1;Parent=MS.gene069457
chr6.4 exon 52875904 52876376 52875904 ID=MS.gene069457.t1.exon1;Parent=MS.gene069457.t1
chr6.4 CDS 52875904 52876376 52875904 ID=cds.MS.gene069457.t1;Parent=MS.gene069457.t1
chr6.4 exon 52874719 52875029 52874719 ID=MS.gene069457.t1.exon2;Parent=MS.gene069457.t1
chr6.4 CDS 52874719 52875029 52874719 ID=cds.MS.gene069457.t1;Parent=MS.gene069457.t1
chr6.4 exon 52873929 52873993 52873929 ID=MS.gene069457.t1.exon3;Parent=MS.gene069457.t1
chr6.4 CDS 52873929 52873993 52873929 ID=cds.MS.gene069457.t1;Parent=MS.gene069457.t1
chr6.4 exon 52873394 52873680 52873394 ID=MS.gene069457.t1.exon4;Parent=MS.gene069457.t1
chr6.4 CDS 52873394 52873680 52873394 ID=cds.MS.gene069457.t1;Parent=MS.gene069457.t1
chr6.4 exon 52872170 52872356 52872170 ID=MS.gene069457.t1.exon5;Parent=MS.gene069457.t1
chr6.4 CDS 52872170 52872356 52872170 ID=cds.MS.gene069457.t1;Parent=MS.gene069457.t1
chr6.4 exon 52871837 52872079 52871837 ID=MS.gene069457.t1.exon6;Parent=MS.gene069457.t1
chr6.4 CDS 52871837 52872079 52871837 ID=cds.MS.gene069457.t1;Parent=MS.gene069457.t1
Gene Sequence

>MS.gene069457

ATGGCAAGCCTTTCTAATTCAAAGAATCTCATTTGTGAGAATGAGAGCATAGAGAAAAGAGAAGAGCAAGAAACATTAGAAGATAATGATGATGAAAGCTTCATGTATGCAATGCAGCTTGCAATCTCTATTGCACTTCCCATGGCACTACAATCTGCAATTGATCTTGGCGTTTTTGAAGTGTTGCAGAAAGCTGGTAAAGGTGCTTACCTCTCGGCCGACGACATCGGGTCCCGTCTTTCCAACATTAATAACCCAGAAGCATTCAAAATGTTAGATCGCATTCTTGCTCTTCTTGCCTCTCACTCACTGCTTAATTGTTCTATCCTTCCTCATGAACAAAACCACCTCAATTCCTTTAAGAGACACTATAGCATGACTCCTGTTGCAAAGTTTTTTGCTCCTAATTCTGATGGTGTTTCATTAGGACCCTTGATTGCCTTGAATAATGATAAGATCTTATTAGCTAGCTGGTCAGTCATTACTCCTTCTGCTCACATATATATCTTAAATACCTACACTACTACTACTACAACTTGTTATACGTACTATTATTAAAAAAAAATTAGGGGACTACGTACTATAATTTTATTTTAAATGTTGCATTTTGGGAGAAATGGTCTAATCTAATTGTAGAGTCCTTTTTTTTTTTTTTTGGTATAAAAAGGACAAAGCCCAAAGAGAAAATAAAACTAAGAAATTAAACGGAGACCAAAAATTACGTACACAATCGTTGTATGAATAGGTAGTTTGACTCATTGGCAATTTTTTTTACTTTCAAATATAGAAGATTCATACTTCACAATCGTTGTATTTTTTTTAATTATAATTTGCTAGACATAGTTAACCACATATTTAAACTTAGCTAAAAATTTAATATTTTTTTGGTAAATTTTTAGGTATCTTGAATTTTGATTGGGTGCTGGTACCATATATGCAAAATTCATTCAAAATTTATTTTAATTTTTGAATAAATTAATACAAAAATATGACATATCATTGAAAATTTTGATGATATACATACCCACATTTCATGGTAGCATTATGTTCAATTTTTTTTTATTTTCAAAATTTGATCACAACTTTTTTAAAGTATTGAGAAACACATAAGTAAGAGTTGAACAAGATAGTCTTGCATAGACACAAATTCAAATAAAATTATTTGGGCACACCCACAACAAAGAAGAAATTTTAATGATAATTAAATTAGTCACATCATTCAACGTCATTCTTTAAAAAAAAGCATCAATTGTGTGAGTGTGTCTAAACCTTTTAGATTTAGGTTTGTCCCCAAGTAAGTATTTTTCGAGTCGAACACTATTGTTTAATATATTCATCTTTAATTAGGTCCCAGCTTAAAGTTGCAATTGAGGAAGGAGGTACTCCATTTAACAAGGTTCATGGCAGCCATCTCTTTGATTATCCAAGCTTAGACTTGAGGTTCAATCAAATTCTCAATACAGCGATGAGCAATCATACAACTATAGTCATGAAAAAGGTTCTTGAATCCTACAAAGGTTTTAGGGATGTAAAAAGACTTGTGGATGTAGGTGGTGGCCTTGGAATGAACATTAACATGATCACTTCAAAATACACTCATATTCAGGGTATCAATTTTGACTTGCCTCATGTCATACAACATGCCCCTTCCTATCCTGGTATGACCTTCACGCATAGGAATACATGTTTGTGTATTTTGACGCATATAAAAATTATTTAAAATTTATAGTTTCTATTTGTTTGTAATAATATGAATCGAGTTGTTTAATATTGATCCGGTTCAATGATGAGTCTTTTTTATGTTTAGTAAACTTTTATAAAATATTATTTTTATTCTCCATTCTTATATTGTAAAATTTCATTTTTACTAAAAATGATAAAGTTCTGCCTTTAAACCATTTTTAAAAGGTCCATATTAAACACATCTAATATGAATATCTAATTATTTGCACCAATTTTTATTTTTAAATATATTTGTTTTTGCAAATATACCACTTTTTGAAAGTGTTTGTTTTTGTTTTAATCTTTGTAATGTACAACTTCGTTATTTTTGTTTTTTATTATTTTGTTTTAGTCTCTCTTAATAAATATAATATTCGTTTTAGCCCTTATATGGTATGTATTGGAGGGACTATAATCAAATCAAATAACCTACATATTCATGTACTCATTCAAACATGAGTAAATTTTATGGAGTTAAAACAAACTAAGGACCAAAAAAATTGCAATAATTTAAAAATAAAATACAAGAACTAAAAATAAAAAGTATAAATATTTGTAAGAATTGAATATACATTAAAATCTAATACAAAATATTATATCAGTTTTCCATCATTCCTCCTTCAAAAAAAAAAAAGTAAAATATATCTAATATTGTTTGCAGGAGTGGAGCATATTGGCGGAGATATGTTTGAAAGTGTGCCTAGTTGTGATGCCATTTTTATGAAGGTGAGTGGATGTGCTTTATTGTTCATGGTTGTAGAAAGGTAGCTAGGAGAACAAATAACCTCTTGATGGAATAATAAACATTTAATTCTAAGGAAAAATCGTTAAAATTATGAAGAAAAAATATATTTAAAATTCAATTATCAATATTAACTATATATGTGTGTGTAATTAAGTTATTAAAATTTCAGCAACTATCATCCATGTTCTATATACAACTATATTAATAGTTTAACTAAATTTTTATATAGTGGATACTTCATGATTGGAGTCATGAAAATTGCATGAAACTTATGAAGAATTGTTATGATGCCATTCCTGATGATGGAAAGGTGATAGTTTTGGAGGCAATTCTACCTAATATGCCTAAGAATGAAGTTTCTTGGAAATCTATCTCCCAAATGGATATTGTCATGATGACTCATTGTTCAGAAGGAAAAGAGCGAACTAAGCAAGAGTTCATGGATATGGCAACTAAAGCTGGATTTCGTGGCATCAAATATGAATGTTGCATCTATAATTTTTGGATTATATTCAAGTAAATCTACAAACTGCAATATGGAATTGTAATTGTACTATTTAGTGTTACTTTTTTTACAATATGCTTTCACCTATAACTTTCATATGAATGGAGTACTCAAACGCTTAGATGATTATTGTTTTCGTTTATTTGATTATTGTTTTTGTTTAAGGAACGTTGTAATATTTCAATCGGTGGCATCTAGCATGCCAAAATGCATCTTCTTTGGTATGGTGCACAAATAGGTTAATTACCATTGATTAAATATTAAACAATTCAATGGCCAAGATTGCACACCTGGTACTTGAATAGCAGGTATTTTCGAATATTGTTCAGAATTGCAGAAATATCCTTCCACATTAAAGTAATTAAAATTATAAATTGCAGAAATGTCCTTTCACATTAATGTAATTAAATTTGTAAATTGCAGAAATATACTTTGACATTAATATAATTAAATTTGCAAGTTAATAAAAAATTAATATTTTATTTTTAAATAAATAAAAAAAATGTATTTTATATTACTTTTTTTTTTCGAAGGAGTATTTTATATTACATATAATTTTTTTTTACTTGTAAAAAAAAATTATATATTTTATGGACAAATTTTTGAAAACGAAGTCATTATTTTTCATTATTCATATCTTGAAACAATTTTTTAAAACGAAGTCATTATTTATTCCCCTTTAACAATGAACGATGAAGATGGTGATCGATGAAATGAGCGGCGGATGCAGGTCTGCCATCGTCGCCGTTTTGAGATGGACGAAGACAAGATGAAGAATCGGGTCATTTGATTGGGTTTTCCGAACCGTTTTGACGGCAATAAGATTGGGTTTTTAGTTATGGGCCGGGAAAAAATGATCGGGTCACGGCCCATTTAGAAGGCTATTTTAAGGGTTGTTGTGAATCTTGGCATTATCGACGTCTGAGAAGAAAATTCTAGGGTTTGAATTTGAAAATGTCTTCTTCTAGTAGCAGGTAACTTCAATGTTTGAGTTGTTTTTTGTTTTTTTAATCTTCTGGTTATTTATTAGATTTTGTTGAAACTGCAGCCATGTAATTGATCCGGAGTTGGACGAATTGATGCCCAATTTTCACCCATTACCTGTAGACGAAAATCCAAATGAAGAAGAAGTCGATGGCCCAGTATCTGCACAATTTCAAAAATTTCAAAACGGTGATCATACTTTTTGGATGCATAGTATTAGTTCTGCTACGGCTGTTGGACGGAGTGTTCTGGTTAGTTTTAATTTTATTTTTGCTGGATTATTTGCGCATGGGTGGTGGCTTTGTGGTTGAAAAGTAATATTATTTGTTTTGAATGTGTAGCATATTCCCCGGAAGATTGCAATTCAAAGTATGTATGTGAATCAATCCAAAATTCGAATAGTTGATGATGAAACTGGAGAAGAATATGAATGTGAAGTTCGTGATAAAGGAAATTGGATGGAGAAATACGTTGGTAGTGGATGGTTTGAGTTTGTTAGGGCAAAAGAACTCAAAGAAGGAGATTCGTTGTTCTTCACTATTGATAATCCTCCACACAAATTATTTGTATCAGTGATTAGATAG
Protein sequence

>MS.gene069457.t1

MASLSNSKNLICENESIEKREEQETLEDNDDESFMYAMQLAISIALPMALQSAIDLGVFEVLQKAGKGAYLSADDIGSRLSNINNPEAFKMLDRILALLASHSLLNCSILPHEQNHLNSFKRHYSMTPVAKFFAPNSDGVSLGPLIALNNDKILLASWSQLKVAIEEGGTPFNKVHGSHLFDYPSLDLRFNQILNTAMSNHTTIVMKKVLESYKGFRDVKRLVDVGGGLGMNINMITSKYTHIQGINFDLPHVIQHAPSYPGVEHIGGDMFESVPSCDAIFMKWILHDWSHENCMKLMKNCYDAIPDDGKVIVLEAILPNMPKNEVSWKSISQMDIVMMTHCSEGKERTKQEFMDMATKAGFRGIKYECCIYNFWIIFNHVIDPELDELMPNFHPLPVDENPNEEEVDGPVSAQFQKFQNGDHTFWMHSISSATAVGRSVLHIPRKIAIQSMYVNQSKIRIVDDETGEEYECEVRDKGNWMEKYVGSGWFEFVRAKELKEGDSLFFTIDNPPHKLFVSVIR