Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069695.t1 | XP_024642081.1 | 91.6 | 238 | 20 | 0 | 118 | 355 | 25 | 262 | 1.10E-117 | 433.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069695.t1 | Q568K5 | 35.4 | 212 | 111 | 4 | 129 | 338 | 29 | 216 | 3.0e-20 | 100.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069695.t1 | A0A396HG85 | 91.6 | 238 | 20 | 0 | 118 | 355 | 25 | 262 | 7.7e-118 | 433.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene069695.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069695.t1 | MTR_6g072100 | 91.453 | 234 | 20 | 0 | 117 | 350 | 24 | 257 | 1.24e-157 | 442 |
| MS.gene069695.t1 | MTR_6g072100 | 84.507 | 71 | 11 | 0 | 3 | 73 | 15 | 85 | 7.74e-34 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069695.t1 | AT1G18335 | 52.766 | 235 | 103 | 2 | 117 | 350 | 35 | 262 | 9.07e-72 | 225 |
| MS.gene069695.t1 | AT1G18335 | 52.766 | 235 | 103 | 2 | 117 | 350 | 35 | 262 | 9.07e-72 | 225 |
| MS.gene069695.t1 | AT1G18335 | 52.991 | 234 | 102 | 2 | 117 | 349 | 35 | 261 | 1.66e-71 | 224 |
Find 73 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGTATATATTGTTTAAC+AGG | 0.263897 | 6.1:-66742463 | None:intergenic |
| CTCTGAATATATTGTTTAAC+AGG | 0.272563 | 6.1:-66743725 | None:intergenic |
| TGTACATTACTGCTTTGTTT+TGG | 0.323853 | 6.1:+66746848 | MS.gene069695:CDS |
| ATTTCGAAGCAGCGATAAAC+AGG | 0.379110 | 6.1:-66741323 | None:intergenic |
| ATTTCGAAGCAGCGATAAAC+AGG | 0.379110 | 6.1:-66744664 | None:intergenic |
| CTTAACATGGAAGGGCCATA+TGG | 0.380703 | 6.1:+66746651 | MS.gene069695:CDS |
| TATCGCTGCTTCGAAATTAA+CGG | 0.393702 | 6.1:+66741329 | MS.gene069695:CDS |
| TATCGCTGCTTCGAAATTAA+CGG | 0.393702 | 6.1:+66744670 | MS.gene069695:CDS |
| CGTGGCCAGGGGAAAGGATT+GGG | 0.393909 | 6.1:+66746918 | MS.gene069695:CDS |
| TCTTGCCACTCAGCCCCATA+TGG | 0.400551 | 6.1:-66746666 | None:intergenic |
| CACAAATATATAGAGTGCTT+CGG | 0.401762 | 6.1:-66746724 | None:intergenic |
| CAAATCAGCTTATAGCATAA+AGG | 0.405600 | 6.1:+66741283 | MS.gene069695:CDS |
| ATATATTCAGAGACTTCTTA+AGG | 0.424597 | 6.1:+66743736 | MS.gene069695:CDS |
| ATAGCTGATACATTCACCTT+TGG | 0.425037 | 6.1:-66747316 | None:intergenic |
| TGCTTTGATGAGTTGTTCAT+TGG | 0.428415 | 6.1:-66744608 | None:intergenic |
| CAAAGCAGCATATAGCATAA+AGG | 0.436019 | 6.1:+66744624 | MS.gene069695:CDS |
| AAGATAGTGGTCCCTTGGTT+GGG | 0.436841 | 6.1:+66746823 | MS.gene069695:CDS |
| ACAGCTTGAGTCTCGTGGCC+AGG | 0.448135 | 6.1:+66746905 | MS.gene069695:CDS |
| AAAGGTGAAGCGTATAGAAA+TGG | 0.455948 | 6.1:+66746695 | MS.gene069695:CDS |
| ATATATACAGAGACTTCTTA+AGG | 0.474613 | 6.1:+66745794 | MS.gene069695:CDS |
| AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6.1:+66746932 | MS.gene069695:CDS |
| GAAGATAGTGGTCCCTTGGT+TGG | 0.475267 | 6.1:+66746822 | MS.gene069695:CDS |
| TCTTCTTGACGACTAGTTGA+AGG | 0.475356 | 6.1:-66746804 | None:intergenic |
| TGATTTGATGAGTTGTTCAT+TGG | 0.476653 | 6.1:-66741267 | None:intergenic |
| ATATATACAGAGACTTCTTA+AGG | 0.487032 | 6.1:+66742474 | MS.gene069695:CDS |
| TTAACATGGAAGGGCCATAT+GGG | 0.490128 | 6.1:+66746652 | MS.gene069695:CDS |
| GCTTTCCCAATCCTTTCCCC+TGG | 0.495357 | 6.1:-66746923 | None:intergenic |
| TATTGAGCTTATCGCCCAAA+AGG | 0.500241 | 6.1:+66746959 | MS.gene069695:CDS |
| GAGTCTCGTGGCCAGGGGAA+AGG | 0.501909 | 6.1:+66746912 | MS.gene069695:CDS |
| TCGTGGCCAGGGGAAAGGAT+TGG | 0.504530 | 6.1:+66746917 | MS.gene069695:CDS |
| CAATGAACTCTGAGAGAAGA+AGG | 0.509758 | 6.1:+66741143 | None:intergenic |
| ACAAATATATAGAGTGCTTC+GGG | 0.510555 | 6.1:-66746723 | None:intergenic |
| CTATCAGTGTGCTTAAAGTC+AGG | 0.516924 | 6.1:+66743680 | MS.gene069695:CDS |
| CTCACAGTGTGTTTAAAGTC+AGG | 0.518976 | 6.1:+66745738 | MS.gene069695:CDS |
| ATCTACAGCTTAACATGGAA+GGG | 0.529467 | 6.1:+66746643 | MS.gene069695:intron |
| CAGCTTGAGTCTCGTGGCCA+GGG | 0.534061 | 6.1:+66746906 | MS.gene069695:CDS |
| ACCTTCTGAAGTTTATCCAA+TGG | 0.539075 | 6.1:+66748100 | MS.gene069695:CDS |
| CTCACAGTGTGTTTAAAGTC+AGG | 0.541232 | 6.1:+66742418 | MS.gene069695:CDS |
| AATCTACAGCTTAACATGGA+AGG | 0.544882 | 6.1:+66746642 | MS.gene069695:intron |
| TATATATTGTTTAACAGGAG+AGG | 0.556533 | 6.1:-66742458 | None:intergenic |
| TGAGTGGCAAGAGGAAGAAA+AGG | 0.556815 | 6.1:+66746677 | MS.gene069695:CDS |
| TCAAGAAGATAGTGGTCCCT+TGG | 0.557490 | 6.1:+66746818 | MS.gene069695:CDS |
| ATATATTGTTTAACAGGAGA+GGG | 0.557871 | 6.1:-66743719 | None:intergenic |
| AATATATTGTTTAACAGGAG+AGG | 0.560895 | 6.1:-66743720 | None:intergenic |
| CTTCTTGACGACTAGTTGAA+GGG | 0.589404 | 6.1:-66746803 | None:intergenic |
| ACTAGTCGTCAAGAAGATAG+TGG | 0.589965 | 6.1:+66746810 | MS.gene069695:CDS |
| ACCATTGGATAAACTTCAGA+AGG | 0.593452 | 6.1:-66748101 | None:intergenic |
| CATTCCTAGGGATATGACTA+CGG | 0.599881 | 6.1:+66742709 | MS.gene069695:intron |
| TCTACGAGAGTTGAGAGTGA+GGG | 0.617410 | 6.1:+66742732 | MS.gene069695:CDS |
| AGTTCATACACATAAAGTAC+CGG | 0.630714 | 6.1:-66746882 | None:intergenic |
| AGCTTGAGTCTCGTGGCCAG+GGG | 0.632554 | 6.1:+66746907 | MS.gene069695:CDS |
| AAGGGCCATATGGGGCTGAG+TGG | 0.635636 | 6.1:+66746661 | MS.gene069695:CDS |
| CTACGAGAGTTGAGAGTGAG+GGG | 0.641881 | 6.1:+66742733 | MS.gene069695:CDS |
| GATAAACAGGAAAATAAGTG+AGG | 0.644557 | 6.1:-66744651 | None:intergenic |
| GTGTGCTTAAAGTCAGGACA+TGG | 0.647300 | 6.1:+66743686 | MS.gene069695:CDS |
| ACCCCTAAACTGTACCATGA+GGG | 0.649411 | 6.1:-66742762 | None:intergenic |
| ATATGGGGCTGAGTGGCAAG+AGG | 0.653218 | 6.1:+66746668 | MS.gene069695:CDS |
| TCTAAATCTACAGCTTAACA+TGG | 0.653637 | 6.1:+66746638 | MS.gene069695:intron |
| TAACATGGAAGGGCCATATG+GGG | 0.654689 | 6.1:+66746653 | MS.gene069695:CDS |
| CAATCTAACGGTGCACTGAG+TGG | 0.655477 | 6.1:-66748265 | None:intergenic |
| ACTCTATATATTTGTGCACG+AGG | 0.656432 | 6.1:+66746731 | MS.gene069695:CDS |
| GTAATGTACAAACCCAACCA+AGG | 0.656995 | 6.1:-66746835 | None:intergenic |
| TGTCGTGCTAACTGTTCCAA+AGG | 0.658426 | 6.1:+66747300 | MS.gene069695:CDS |
| GAACTACAGCTTGAGTCTCG+TGG | 0.665967 | 6.1:+66746900 | MS.gene069695:CDS |
| GTCTACGAGAGTTGAGAGTG+AGG | 0.667387 | 6.1:+66742731 | MS.gene069695:CDS |
| TAATGTACAAACCCAACCAA+GGG | 0.673224 | 6.1:-66746834 | None:intergenic |
| ATAAACTTCAGAAGGTGACG+TGG | 0.682865 | 6.1:-66748093 | None:intergenic |
| GTGTGTTTAAAGTCAGGACA+TGG | 0.688181 | 6.1:+66742424 | MS.gene069695:CDS |
| GTGTGTTTAAAGTCAGGACA+TGG | 0.688181 | 6.1:+66745744 | MS.gene069695:CDS |
| GATAAACAGGAAAAGAAGCG+AGG | 0.692635 | 6.1:-66741310 | None:intergenic |
| TACGAGAGTTGAGAGTGAGG+GGG | 0.703123 | 6.1:+66742734 | MS.gene069695:CDS |
| CTGACTTTAAACACACTGTG+AGG | 0.735036 | 6.1:-66745737 | None:intergenic |
| GAAGACAACATTGTTCACTG+AGG | 0.772166 | 6.1:+66746776 | MS.gene069695:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 66741145 | 66748283 | 66741145 | ID=MS.gene069695 |
| chr6.1 | mRNA | 66741145 | 66748283 | 66741145 | ID=MS.gene069695.t1;Parent=MS.gene069695 |
| chr6.1 | exon | 66741145 | 66741180 | 66741145 | ID=MS.gene069695.t1.exon1;Parent=MS.gene069695.t1 |
| chr6.1 | CDS | 66741145 | 66741180 | 66741145 | ID=cds.MS.gene069695.t1;Parent=MS.gene069695.t1 |
| chr6.1 | exon | 66741248 | 66741350 | 66741248 | ID=MS.gene069695.t1.exon2;Parent=MS.gene069695.t1 |
| chr6.1 | CDS | 66741248 | 66741350 | 66741248 | ID=cds.MS.gene069695.t1;Parent=MS.gene069695.t1 |
| chr6.1 | exon | 66742416 | 66742495 | 66742416 | ID=MS.gene069695.t1.exon3;Parent=MS.gene069695.t1 |
| chr6.1 | CDS | 66742416 | 66742495 | 66742416 | ID=cds.MS.gene069695.t1;Parent=MS.gene069695.t1 |
| chr6.1 | exon | 66742718 | 66742769 | 66742718 | ID=MS.gene069695.t1.exon4;Parent=MS.gene069695.t1 |
| chr6.1 | CDS | 66742718 | 66742769 | 66742718 | ID=cds.MS.gene069695.t1;Parent=MS.gene069695.t1 |
| chr6.1 | exon | 66743678 | 66743757 | 66743678 | ID=MS.gene069695.t1.exon5;Parent=MS.gene069695.t1 |
| chr6.1 | CDS | 66743678 | 66743757 | 66743678 | ID=cds.MS.gene069695.t1;Parent=MS.gene069695.t1 |
| chr6.1 | exon | 66744589 | 66744691 | 66744589 | ID=MS.gene069695.t1.exon6;Parent=MS.gene069695.t1 |
| chr6.1 | CDS | 66744589 | 66744691 | 66744589 | ID=cds.MS.gene069695.t1;Parent=MS.gene069695.t1 |
| chr6.1 | exon | 66745736 | 66745815 | 66745736 | ID=MS.gene069695.t1.exon7;Parent=MS.gene069695.t1 |
| chr6.1 | CDS | 66745736 | 66745815 | 66745736 | ID=cds.MS.gene069695.t1;Parent=MS.gene069695.t1 |
| chr6.1 | exon | 66746651 | 66746980 | 66746651 | ID=MS.gene069695.t1.exon8;Parent=MS.gene069695.t1 |
| chr6.1 | CDS | 66746651 | 66746980 | 66746651 | ID=cds.MS.gene069695.t1;Parent=MS.gene069695.t1 |
| chr6.1 | exon | 66747286 | 66747362 | 66747286 | ID=MS.gene069695.t1.exon9;Parent=MS.gene069695.t1 |
| chr6.1 | CDS | 66747286 | 66747362 | 66747286 | ID=cds.MS.gene069695.t1;Parent=MS.gene069695.t1 |
| chr6.1 | exon | 66748079 | 66748121 | 66748079 | ID=MS.gene069695.t1.exon10;Parent=MS.gene069695.t1 |
| chr6.1 | CDS | 66748079 | 66748121 | 66748079 | ID=cds.MS.gene069695.t1;Parent=MS.gene069695.t1 |
| chr6.1 | exon | 66748197 | 66748283 | 66748197 | ID=MS.gene069695.t1.exon11;Parent=MS.gene069695.t1 |
| chr6.1 | CDS | 66748197 | 66748283 | 66748197 | ID=cds.MS.gene069695.t1;Parent=MS.gene069695.t1 |
| Gene Sequence |
| Protein sequence |