AlfalfaGEDB | MS.gene069811

M. sativa cultivar XinJiangDaYe / MS.gene069811

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069811.t1	XP_003619794.1	94.3	474	27	0	12	485	142	615	4.30E-255	890.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069811.t1	Q9SJQ1	35.0	468	265	12	44	477	183	645	9.0e-68	259.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069811.t1	G7KPP5	94.3	474	27	0	12	485	142	615	3.1e-255	890.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069811.t1	MTR_6g069030	94.304	474	27	0	12	485	142	615	0.0	925
MS.gene069811.t1	MTR_1g110280	36.820	478	263	12	30	478	171	638	2.67e-92	294
MS.gene069811.t1	MTR_1g061590	35.644	505	284	13	9	478	149	647	2.17e-90	290
MS.gene069811.t1	MTR_3g062500	36.831	486	284	13	9	485	163	634	1.02e-89	287
MS.gene069811.t1	MTR_3g062500	36.831	486	284	13	9	485	173	644	1.59e-89	287
MS.gene069811.t1	MTR_3g093710	35.307	473	292	8	9	478	154	615	2.54e-87	280
MS.gene069811.t1	MTR_5g009660	35.417	480	271	14	13	485	133	580	1.46e-85	275
MS.gene069811.t1	MTR_5g055470	36.646	483	269	13	9	477	148	607	5.89e-85	274
MS.gene069811.t1	MTR_4g113100	36.025	483	283	10	12	483	156	623	1.43e-84	274
MS.gene069811.t1	MTR_8g107470	34.517	507	285	12	13	485	161	654	1.88e-83	271

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069811.t1	AT1G48480	35.700	493	272	13	17	478	165	643	2.75e-89	286
MS.gene069811.t1	AT2G26730	37.888	483	270	14	12	479	154	621	2.70e-87	281
MS.gene069811.t1	AT2G36570	34.990	503	283	13	13	478	151	646	1.80e-86	279
MS.gene069811.t1	AT3G08680	36.100	482	280	13	9	478	150	615	6.79e-86	277
MS.gene069811.t1	AT3G08680	36.100	482	280	13	9	478	150	615	6.79e-86	277
MS.gene069811.t1	AT5G05160	34.232	482	285	11	9	480	160	619	1.81e-85	276
MS.gene069811.t1	AT1G68400	37.320	485	252	18	29	478	170	637	2.94e-85	276
MS.gene069811.t1	AT5G58300	36.179	492	265	15	13	485	174	635	1.99e-84	273
MS.gene069811.t1	AT5G58300	36.179	492	265	15	13	485	174	635	1.99e-84	273
MS.gene069811.t1	AT5G58300	36.179	492	265	15	13	485	174	635	1.99e-84	273

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Find 66 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATGTATATTGTTT+TGG	0.290554	6.2:+72322499	MS.gene069811:CDS
AAAATTCCAGGTCATATATT+AGG	0.379743	6.2:+72322550	MS.gene069811:CDS
AACAACCTTAGTATATGGTT+TGG	0.438759	6.2:+72319071	None:intergenic
AAGTAATGATCTTTCAGATT+GGG	0.411640	6.2:+72322591	MS.gene069811:CDS
AATCAGCAGATGCAATTGCT+AGG	0.544928	6.2:+72320641	MS.gene069811:CDS
AATGATGGTTGATCAAAAGG+TGG	0.640246	6.2:-72319377	None:intergenic
ACATTGAAACTTATCAATGA+TGG	0.514961	6.2:-72319392	None:intergenic
ACTTTGTCTGAGCTCCTACA+TGG	0.507620	6.2:+72320755	MS.gene069811:CDS
AGGGCATCAGCAGAAGTACT+AGG	0.541778	6.2:+72320515	MS.gene069811:CDS
AGTCACCAGAATTTGTTAAA+AGG	0.267899	6.2:+72322461	MS.gene069811:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAAACCTGTAAGATT+TGG	-	chr6.2:72319239-72319258	None:intergenic	30.0%
ATAAGAAGAGGATTCATGTT+TGG	+	chr6.2:72319591-72319610	MS.gene069811:CDS	30.0%
ATATATGAACTTGTCTCTGA+TGG	+	chr6.2:72320731-72320750	MS.gene069811:CDS	30.0%
ATCAATGATGGTTGATCAAA+AGG	-	chr6.2:72319383-72319402	None:intergenic	30.0%
ATGGTATTCACATAATTTGG+TGG	-	chr6.2:72321487-72321506	None:intergenic	30.0%
CAAGTAATGATCTTTCAGAT+TGG	+	chr6.2:72322590-72322609	MS.gene069811:CDS	30.0%
CAATGGAAACAAATAAGAAG+AGG	+	chr6.2:72319579-72319598	MS.gene069811:CDS	30.0%
CGAAACCAAAAAGTAACTTA+AGG	+	chr6.2:72321886-72321905	MS.gene069811:intron	30.0%
CGAAACCAAAAAGTAACTTA+AGG	-	chr6.2:72321905-72321886	None:intergenic	30.0%
CTGCAAGAAAATTATTTGGA+TGG	+	chr6.2:72319347-72319366	MS.gene069811:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	72319085	72322816	72319085	ID=MS.gene069811
chr6.2	mRNA	72319085	72322816	72319085	ID=MS.gene069811.t1;Parent=MS.gene069811
chr6.2	exon	72319085	72319115	72319085	ID=MS.gene069811.t1.exon1;Parent=MS.gene069811.t1
chr6.2	CDS	72319085	72319115	72319085	ID=cds.MS.gene069811.t1;Parent=MS.gene069811.t1
chr6.2	exon	72319297	72319728	72319297	ID=MS.gene069811.t1.exon2;Parent=MS.gene069811.t1
chr6.2	CDS	72319297	72319728	72319297	ID=cds.MS.gene069811.t1;Parent=MS.gene069811.t1
chr6.2	exon	72320387	72320776	72320387	ID=MS.gene069811.t1.exon3;Parent=MS.gene069811.t1
chr6.2	CDS	72320387	72320776	72320387	ID=cds.MS.gene069811.t1;Parent=MS.gene069811.t1
chr6.2	exon	72322212	72322816	72322212	ID=MS.gene069811.t1.exon4;Parent=MS.gene069811.t1
chr6.2	CDS	72322212	72322816	72322212	ID=cds.MS.gene069811.t1;Parent=MS.gene069811.t1

Gene Sequence

>MS.gene069811

ATGGTTTGGTATCACTTGTTCAAATTGGCATGTTGTTCATATTACAATTCAAGGAGTCAACCTTAGTGGCTATTTACCTTCCACATTTCTTCAAAACATAACTTTCTTGAGGCAAATTGATTTTAGAAACAATGCACTTTTTGGATTATTGCCAAATCTTACAGGTTTGGTTTTCTTAGAAGTAGTTAAGCTTTCATTTAATCATTTCTCAGGTTCAATACCTTTGGAATATGTTGAATTGCATAGTCTTAAAGTTTTGGAGCTGCAAGAAAATTATTTGGATGGTGAAATTCCACCTTTTGATCAACCATCATTGATAAGTTTCAATGTGTCATATAATCATTTGGTAGGGAAAATTCCTGAAACTTCTTTGCTTCAAAGGTTTCCAAAGAGTTCTTTTGATGATAATTCTGATCTTTGTGGAAAACCATTGGATAAGTCATGTACTGCTGAATCTCCTGCACCACCACCTTTTGCTATTGCACCTAGTTCTTCAATGGAAACAAATAAGAAGAGGATTCATGTTTGGATTATTGCTTTGATTGCTATTGTTGCTGCTTTGTGTCTTTTTCTTGTGATTATTGCTTTCTTGTTTTGTAAAAGACAAGCTAGAGGAAATGAAACAAGAATAAATGATTCAGCAAGTAAGATATTTCTTTCTTATAAATTCATTTATTCTTCTTCTTCTTTTTGGATTGACTTATTTGAGCTTTTCTGCTACCATAAGCACTTGTGGGACGATTTGTCTGTTTGGATTGACTTATTTGAGTTTATCGATTAGTATAAGCACTGTGTGAGAGAGCGTACACAAATAGCTTAATTGTGTTATGTCCAAAAGATGTTTTTAGCTTATCTTTATACACTCTTTAGAATAGTTTTTGAAAATAACTTATATGATAAGTGTTTATGTTATAAGGTCTTAATTATGTTATTTATCCAGACAAGGCCTATTTAGGAGAGTTATGGAAACAGATTATAACATGTCCATAAGTTGTTTTCAGCTTATTCACATATGCTCTTCAAGATAGTTTACGAAAACAACTTTTGGTTATATGAAAACAATTTGACTTTACGATAAGCACTTATGATGTAATCACCTAACTAAACTGCTTATCCAAACAGGGCCTAAAGTCATACCTTTATTTTTTATGAAAACTTATCATTATGATATTTATCTAAACTTTCTAAGAAAAATGTAAAAAAATTAGGTTTATTATATATTCAGAATGTTAATAAAATTATGTTTCATAGACTTATTCAGAATTTCTAAATATTTTAAACTTCTTTTGATTTTTCTTATAGGGTATGTTTTTGGAGCATGGGCAAAGAAGATGGTATCTAATGTAGCAAACAATGAAGATTCTGAAAAATTAGGCCAATTAGAATTTTCCAACAAGAAATTTCAAGTTTTTGATATGGATGATTTGTTAAGGGCATCAGCAGAAGTACTAGGAAGAGGAGATTTTGGTGTTACATATAAAGCAACACTTGAAAGCGGTAATGTTGTTGCAGTAAAGAGACTTAGCTACATGAATGAATTGAGCAAGAAGGAATTTAATCAGCAGATGCAATTGCTAGGAGAGATAAAGCATGAAAATGTAGCTGAAATTATCTCCTTTTATCATTCAGAAGATCAAAAGCTTGTCATATATGAACTTGTCTCTGATGGCACTTTGTCTGAGCTCCTACATGGTTAGTTTTTTTTATTTTTAAGTAAATGATGATTTTTGTCTCTAAATATGTGAATGACTGTCGCTATAATCCTCGAATGTATTGAAATTATAAAAGCATCTCTAATGATGCGTTTGATCTGCAAAACAGTAAGTACTTGACAGAACAGTACAAGACAGAACATCACAACACAAATCAGACCAACACATGACAAATTTTTATGATATTGAATAATTGATGGTCTTATACAATTTTTGGTGGACAAAATATTATTTTGTTATTTTAGACAACTTGTACGTGGGACCAAAAGTTGTGCTATGGTTTGGTGAGGGACAAATTTTTTTTATCTGTTCTGTCCCTGATACAATTTTACAAATCAAATACCGTACAACTTGAGTTGTCATGTCTTGTCCTTCATTTTTTAGCAAATCAAACGCACAGTAAGTGTGTCTTTTATTAGTAATTTTATAGACTAAATTGACTAGCGAAAGACATGATTGAAGAAGAAAGTAACTAATGAAAATAATATTTTTTAGGTATGTCATTGAAATTTTAATACACTCAGAGACTATTTTGACATGGTCTTACACATTTACGCATCAAAATAACTATTTACTCTATTTGTTTTTTTATTCCTTAAATTTCGGGTAAGAATAATGTTAGGGACACACTCTCTAAGACATATATTCCGACATACTCTTTTCTATTGGTTGAAATTCATACGACTCCCACCAAATTATGTGAATACCATATAAATTTTGTGGGCTTAATTATTCTTTTGGTCCCTTAAGTTATTTGTTGGTTACATTTTGGTCCCATAAGTTATTAACGTTACAATTTGGTCCCTTAAGTTACTTTTTGGTTTCGTTTTGGTACCTTAACTATTAAAAGTTTCGTTTTGGTCCCTTAACTTATTTTTTGGTTTCGTTTTGGTCCCTTAACTTATTTTTTGGTTTCGTTTTGGTCCCTTAACTCTAATACATTCATTCTAACGTAAAGGACCAAAGTGGTTGACGGAGGAAGAGTTAAGGGACCAAAACGAAACCAAAAAATAAGTTAAGGGACCAAAACGAAACCAAAAAATAAGTTAAGGGACCAAAACGAAACTTTTAATAGTTAAGGGACCAAAACGAAACCAAAAAGTAACTTAAGGGACCAAATTGTAACGTCAATAACTTATGGGACCAAAATGTAACCAACAAATAACTTAAGGGACCAAATCATTAATTAAGCCAATTTTGTGGATCTGCATAAATTTTAACCAGCAGAAGAGATGATAGTGTGTTAAAGAGTGTGTTAGCACTCTTCTTCCAGGTAAACAGTCACTTTGGTATTGAATTTGTAAGACAATGTCACAAAAGTCATTAAATGTATCAAAATAACAAAATATGTTTTTGTTAGTCATTTTGATCTTTGAATGAGTCTCACACTAACATTCATTATGCCTTGGTGATAGAGGGTAGAGGAATTGGAAGAATACCTCTTGATTGGACAACAAGACTTGCCATTATCAAAGACATAGCAAAAGGTCTTGATTTCCTTCACCAATTTTTGTCTACTCACAAAGTTCCACATGCAAATCTCAAGTCATCAAATGTTCTAATCCATCAAGACAACCAAGGCTACCATTCCAAGCTCACTGACTATGGATTCTTACCTTTACTCTCATCATCTATGAAAAATGCAGAAAAGTTATCAATAAGCAAGTCACCAGAATTTGTTAAAAGGAAAAAGTTGACACACAAAACTGATGTATATTGTTTTGGTATCATTATGCTAGAGATTATAACAGGAAAAATTCCAGGTCATATATTAGGCAATGAAGTTGAAGAAACAAGTAATGATCTTTCAGATTGGGTTAGAACTGTGGTGAATAATGATTGGTCTACAGATATATTTGATTTGGAAATATTAGCAGAAAGAGAAGGACATGATGCAATGTTGAATTTAACTGAGATAGCATTGGAGTGTACTGATATGATGCCTGAGAATAGGCCTAAAATGAGTTTAGTGTTGAAGAGAATTGAAGAGATAGAGCAAATGATAAAAGACAATGAGTGA

Protein sequence

>MS.gene069811.t1

MVWYHLFKLACSIPLEYVELHSLKVLELQENYLDGEIPPFDQPSLISFNVSYNHLVGKIPETSLLQRFPKSSFDDNSDLCGKPLDKSCTAESPAPPPFAIAPSSSMETNKKRIHVWIIALIAIVAALCLFLVIIAFLFCKRQARGNETRINDSARYVFGAWAKKMVSNVANNEDSEKLGQLEFSNKKFQVFDMDDLLRASAEVLGRGDFGVTYKATLESGNVVAVKRLSYMNELSKKEFNQQMQLLGEIKHENVAEIISFYHSEDQKLVIYELVSDGTLSELLHEGRGIGRIPLDWTTRLAIIKDIAKGLDFLHQFLSTHKVPHANLKSSNVLIHQDNQGYHSKLTDYGFLPLLSSSMKNAEKLSISKSPEFVKRKKLTHKTDVYCFGIIMLEIITGKIPGHILGNEVEETSNDLSDWVRTVVNNDWSTDIFDLEILAEREGHDAMLNLTEIALECTDMMPENRPKMSLVLKRIEEIEQMIKDNE