AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069877

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069877.t1 MTR_2g100930 94.915 354 10 2 1 347 1 353 0.0 688
MS.gene069877.t1 MTR_4g100630 53.009 349 128 14 1 336 1 326 3.36e-100 299
MS.gene069877.t1 MTR_6g092540 55.233 172 63 4 1 168 1 162 2.86e-50 169
MS.gene069877.t1 MTR_5g037080 50.000 204 58 7 1 183 3 183 2.37e-48 165
MS.gene069877.t1 MTR_8g101650 50.289 173 72 4 3 168 4 169 2.33e-44 154
MS.gene069877.t1 MTR_4g107230 50.920 163 74 5 22 183 6 163 5.64e-33 124
MS.gene069877.t1 MTR_1g111830 61.538 91 34 1 97 187 118 207 8.02e-33 122
MS.gene069877.t1 MTR_4g111975 74.286 70 18 0 98 167 133 202 2.29e-32 123
MS.gene069877.t1 MTR_3g462790 47.651 149 60 5 98 245 142 273 2.98e-32 123
MS.gene069877.t1 MTR_5g069710 73.239 71 19 0 98 168 127 197 7.85e-32 121
MS.gene069877.t1 MTR_7g067080 74.648 71 18 0 98 168 135 205 4.52e-31 119
MS.gene069877.t1 MTR_5g081860 62.222 90 32 1 98 185 120 209 5.84e-30 115
MS.gene069877.t1 MTR_0036s0260 69.118 68 21 0 103 170 28 95 3.13e-28 109
MS.gene069877.t1 MTR_3g104370 42.529 174 77 5 1 168 3 159 7.21e-28 109
MS.gene069877.t1 MTR_2g090305 67.647 68 22 0 103 170 28 95 7.85e-27 105
MS.gene069877.t1 MTR_8g063600 62.195 82 25 2 88 167 95 172 1.20e-24 102
MS.gene069877.t1 MTR_5g027570 45.161 93 49 1 99 189 88 180 6.20e-21 90.5
MS.gene069877.t1 MTR_5g088010 52.113 71 31 1 99 166 56 126 2.38e-20 89.4
MS.gene069877.t1 MTR_4g015130 65.455 55 19 0 113 167 3 57 6.32e-20 83.6
MS.gene069877.t1 MTR_1g048660 54.688 64 29 0 104 167 13 76 1.07e-19 83.2
MS.gene069877.t1 MTR_5g088060 56.923 65 25 1 105 166 274 338 1.75e-18 86.7
MS.gene069877.t1 MTR_5g488160 56.923 65 25 1 105 166 274 338 1.75e-18 86.7
MS.gene069877.t1 MTR_8g063870 53.846 65 28 1 105 167 94 158 6.10e-18 82.8
MS.gene069877.t1 MTR_5g027550 57.895 57 24 0 99 155 73 129 3.33e-17 80.1
MS.gene069877.t1 MTR_1g033620 48.315 89 38 1 119 207 21 101 7.68e-17 79.3
MS.gene069877.t1 MTR_1g083180 53.846 65 25 2 105 165 63 126 4.84e-14 70.1
MS.gene069877.t1 MTR_5g075760 51.562 64 27 2 105 165 107 169 2.53e-13 68.6
MS.gene069877.t1 MTR_5g075790 50.000 64 28 2 105 165 115 177 7.89e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069877.t1 AT3G16350 54.476 391 130 14 1 347 1 387 2.56e-108 322
MS.gene069877.t1 AT5G47390 48.021 379 137 14 1 338 1 360 7.29e-90 274
MS.gene069877.t1 AT1G70000 54.315 197 62 8 1 186 1 180 1.65e-51 172
MS.gene069877.t1 AT1G70000 54.315 197 62 8 1 186 1 180 1.65e-51 172
MS.gene069877.t1 AT5G61620 39.370 254 116 8 1 247 8 230 6.40e-48 164
MS.gene069877.t1 AT5G56840 51.479 169 69 4 1 168 1 157 2.87e-47 160
MS.gene069877.t1 AT2G38090 65.625 96 33 0 80 175 118 213 4.32e-35 130
MS.gene069877.t1 AT5G58900 74.286 70 18 0 98 167 136 205 3.24e-32 122
MS.gene069877.t1 AT1G49010 74.286 70 18 0 98 167 129 198 8.20e-32 122
MS.gene069877.t1 AT1G74840 48.503 167 75 6 29 192 24 182 5.73e-30 115
MS.gene069877.t1 AT5G08520 70.000 70 21 0 98 167 113 182 6.93e-30 116
MS.gene069877.t1 AT5G04760 65.278 72 25 0 97 168 93 164 1.36e-29 113
MS.gene069877.t1 AT1G74840 48.503 167 75 6 29 192 24 182 1.85e-29 114
MS.gene069877.t1 AT3G11280 71.429 70 20 0 98 167 122 191 1.21e-28 112
MS.gene069877.t1 AT3G11280 71.429 70 20 0 98 167 122 191 1.21e-28 112
MS.gene069877.t1 AT5G01200 70.000 70 21 0 98 167 141 210 1.99e-28 111
MS.gene069877.t1 AT1G19000 46.629 178 66 8 29 191 22 185 4.59e-28 111
MS.gene069877.t1 AT1G19000 46.629 178 66 8 29 191 22 185 4.59e-28 111
MS.gene069877.t1 AT5G05790 46.491 114 55 1 98 211 126 233 5.38e-27 108
MS.gene069877.t1 AT5G05790 46.491 114 55 1 98 211 126 233 5.38e-27 108
MS.gene069877.t1 AT4G09450 51.613 93 45 0 80 172 68 160 3.30e-24 98.6
MS.gene069877.t1 AT3G10580 50.000 96 43 2 73 168 68 158 2.67e-23 97.4
MS.gene069877.t1 AT3G10580 58.667 75 29 1 94 168 86 158 3.82e-23 97.8
MS.gene069877.t1 AT5G23650 53.425 73 34 0 96 168 113 185 2.70e-20 90.9
MS.gene069877.t1 AT3G10590 45.349 86 44 2 85 168 91 175 1.29e-16 77.8

Find 107 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCTCCTTTGCCTAGCTTT+TGG 0.260546 2.1:-4001505 None:intergenic
GAAGCGCCGCCGCTGCCGGC+GGG 0.281178 2.1:+3999018 MS.gene069877:CDS
CATCAAGAAAAGTGCCAGTA+TGG 0.298362 2.1:+3999079 MS.gene069877:CDS
GGAAGAACATAGATTGTTCT+TGG 0.306357 2.1:+4001475 MS.gene069877:CDS
GGAAGTAGTATTTGCTCTTC+TGG 0.308188 2.1:-4002227 None:intergenic
GAAAATGAGGCAGGTAAATA+AGG 0.320772 2.1:-4002422 None:intergenic
GATGAAGAGCAGCGAGGTTT+AGG 0.321604 2.1:-3999106 None:intergenic
TCGAGAAGCGCCGCCGCTGC+CGG 0.338043 2.1:+3999014 MS.gene069877:CDS
TCCTTTGGAATGACTGGTAT+TGG 0.340477 2.1:-4002518 None:intergenic
CCCCTTTCCTTGAAGTTGTT+AGG 0.350389 2.1:+4002620 MS.gene069877:CDS
TCTGGCATCGAAGTTGAATC+TGG 0.363477 2.1:-4002209 None:intergenic
TGGAATGCTGATTGCCTTGA+GGG 0.363738 2.1:-4002647 None:intergenic
CTTCACCCCGCCGGCAGCGG+CGG 0.373251 2.1:-3999024 None:intergenic
TCAACATTGACAGGTTCCTT+TGG 0.380571 2.1:-4002533 None:intergenic
TTTAGATCAGAACCGCTAAC+TGG 0.381028 2.1:-4002680 None:intergenic
TCAAAGGGAGCTCCAATTGA+TGG 0.384606 2.1:-4002452 None:intergenic
TGATCCCATTGTAGTCTCAT+TGG 0.391511 2.1:-4002363 None:intergenic
GAATGTCTCATCTGAGCATT+GGG 0.393213 2.1:+4002567 MS.gene069877:CDS
TCCTTTGTTGACTTCTTCAA+AGG 0.400771 2.1:-4002468 None:intergenic
AGAAGCGCCGCCGCTGCCGG+CGG 0.417090 2.1:+3999017 MS.gene069877:CDS
AAAGCCTCAAACTGCTTGAA+TGG 0.420085 2.1:-4002720 None:intergenic
AAGCGCCGCCGCTGCCGGCG+GGG 0.428113 2.1:+3999019 MS.gene069877:CDS
GAGACTACAATGGGATCAAA+TGG 0.433570 2.1:+4002368 MS.gene069877:CDS
CCTTTGTTGACTTCTTCAAA+GGG 0.434334 2.1:-4002467 None:intergenic
CGGTTCAAAACAAGGTGAAC+CGG 0.438885 2.1:-3999153 None:intergenic
TCCTAACAACTTCAAGGAAA+GGG 0.440079 2.1:-4002621 None:intergenic
TCTTCAGATGTAGCTTCCAT+TGG 0.445737 2.1:-4002326 None:intergenic
AAAAGCTAGGCAAAGGAGAC+TGG 0.448710 2.1:+4001507 MS.gene069877:CDS
GGGAAGAATCCTTGCGTCAT+TGG 0.453748 2.1:-4002398 None:intergenic
ACAGGTTCCTTTGGAATGAC+TGG 0.453964 2.1:-4002524 None:intergenic
GAGGTTTAGGTTCCCCATAC+TGG 0.455596 2.1:-3999093 None:intergenic
AAAGCAGAAGAAGCATGAAC+CGG 0.455984 2.1:-3999209 None:intergenic
AAGCTTCACCCCGCCGGCAG+CGG 0.457103 2.1:-3999027 None:intergenic
GAACATAGATTGTTCTTGGT+TGG 0.461435 2.1:+4001479 MS.gene069877:CDS
CATGACTTGCTACTTGAGTA+GGG 0.462555 2.1:-4001565 None:intergenic
AACGCCATTCAAGCAGTTTG+AGG 0.463617 2.1:+4002716 MS.gene069877:CDS
GCATGACTTGCTACTTGAGT+AGG 0.464793 2.1:-4001566 None:intergenic
GAATGAATACTGACCACATC+AGG 0.481403 2.1:-4001659 None:intergenic
TTTCTTGATGATTGATCCAT+CGG 0.482732 2.1:-3999066 None:intergenic
AGCTCCAATTGATGGCCATA+TGG 0.483931 2.1:-4002444 None:intergenic
GGGCTCTCCTAACAACTTCA+AGG 0.485368 2.1:-4002627 None:intergenic
TCATCAGATAAATAACCATC+CGG 0.488271 2.1:-3999185 None:intergenic
CATGCAAATGCTCCAGTTAG+CGG 0.489459 2.1:+4002668 MS.gene069877:CDS
ACAAGTTCATCAACATTGAC+AGG 0.494176 2.1:-4002542 None:intergenic
ACGGACATGTCCGTGAGTTA+TGG 0.495840 2.1:-3998992 None:intergenic
TCTTCTTCGCCGCTGAACCC+CGG 0.498426 2.1:+3999134 MS.gene069877:CDS
GAGAACTCACAACCTTGTAA+TGG 0.500646 2.1:+4002257 MS.gene069877:CDS
TTTCGACATGGCTCCTGATG+TGG 0.516858 2.1:+4001646 MS.gene069877:CDS
CCTAACAACTTCAAGGAAAG+GGG 0.517543 2.1:-4002620 None:intergenic
GCAGCGGCGGCGCTTCTCGA+CGG 0.517789 2.1:-3999011 None:intergenic
CTATGTTCTTCCTCAGTCCA+TGG 0.518156 2.1:-4001464 None:intergenic
GGTTCAAAACAAGGTGAACC+GGG 0.521484 2.1:-3999152 None:intergenic
TGATGGCCATATGGAAAATG+AGG 0.522407 2.1:-4002435 None:intergenic
AGGAGAGACATCGTATCATC+AGG 0.522529 2.1:+4002487 MS.gene069877:CDS
AGGAGCCATGTCGAAAAGAC+TGG 0.523291 2.1:-4001639 None:intergenic
ATCAAGAAAAGTGCCAGTAT+GGG 0.525026 2.1:+3999080 MS.gene069877:CDS
CGCTAACTGGAGCATTTGCA+TGG 0.525907 2.1:-4002667 None:intergenic
GGAATGTCTCATCTGAGCAT+TGG 0.531337 2.1:+4002566 MS.gene069877:CDS
TTGGTTGGTCTCCAAAAGCT+AGG 0.538073 2.1:+4001494 MS.gene069877:CDS
ATCTGAAGAAAATGTAGAAG+AGG 0.540720 2.1:+4002340 MS.gene069877:CDS
ATGAGGCAGGTAAATAAGGT+GGG 0.541274 2.1:-4002418 None:intergenic
CTCCTAACAACTTCAAGGAA+AGG 0.542864 2.1:-4002622 None:intergenic
TCCTGGTAGCATTACTCTGT+CGG 0.543171 2.1:-4001604 None:intergenic
GGCCATATGGAAAATGAGGC+AGG 0.543383 2.1:-4002431 None:intergenic
ATGGAATGCTGATTGCCTTG+AGG 0.546697 2.1:-4002648 None:intergenic
GGCGGCGATTCGTGATGACT+CGG 0.556358 2.1:+3998943 None:intergenic
CAAGTCAGAATATGAACCAA+TGG 0.562551 2.1:+4002310 MS.gene069877:CDS
CAAGGTGAACCGGGGTTCAG+CGG 0.568397 2.1:-3999143 None:intergenic
CAAGGTTGTGAGTTCTCAGA+AGG 0.569930 2.1:-4002251 None:intergenic
GAATGACTGGTATTGGCTTG+AGG 0.572196 2.1:-4002511 None:intergenic
AAATAACCATCCGGGTCATG+CGG 0.572298 2.1:-3999176 None:intergenic
GAGGCCAATGAGACTACAAT+GGG 0.576022 2.1:+4002359 MS.gene069877:CDS
ACTGGAACGTCTCTTCCTCC+TGG 0.576071 2.1:-4001621 None:intergenic
TGGTTATTTATCTGATGACC+CGG 0.576739 2.1:+3999190 MS.gene069877:CDS
TCTGAGCATTGGGGAAACAC+AGG 0.576890 2.1:+4002577 MS.gene069877:CDS
AGTTGTTAGGAGAGCCCTCA+AGG 0.579322 2.1:+4002633 MS.gene069877:CDS
AAGCAGAAGAAGCATGAACC+GGG 0.580723 2.1:-3999208 None:intergenic
AATGAGGCAGGTAAATAAGG+TGG 0.582975 2.1:-4002419 None:intergenic
TCATGCGGCGGTTCAAAACA+AGG 0.584178 2.1:-3999161 None:intergenic
GTCAATGTTGATGAACTTGT+GGG 0.584457 2.1:+4002545 MS.gene069877:CDS
TTTGGTGTTAGATTAACCGA+TGG 0.592133 2.1:+3999050 MS.gene069877:CDS
TGTCAATGTTGATGAACTTG+TGG 0.593101 2.1:+4002544 MS.gene069877:CDS
TGCTCTCACTGCAGCAACAA+CGG 0.601199 2.1:+3998969 MS.gene069877:CDS
GGTTGTGAGTTCTCAGAAGG+TGG 0.602477 2.1:-4002248 None:intergenic
GAACCGCCGCATGACCCGGA+TGG 0.608961 2.1:+3999170 MS.gene069877:CDS
GGTCTCCAAAAGCTAGGCAA+AGG 0.614877 2.1:+4001500 MS.gene069877:CDS
AGAGGCCAATGAGACTACAA+TGG 0.616526 2.1:+4002358 MS.gene069877:CDS
GCAACAACGGCCATAACTCA+CGG 0.617037 2.1:+3998982 MS.gene069877:CDS
CTAACAACTTCAAGGAAAGG+GGG 0.629370 2.1:-4002619 None:intergenic
CTAGGCAAAGGAGACTGGCG+AGG 0.631792 2.1:+4001512 MS.gene069877:CDS
TCAAGAAAAGTGCCAGTATG+GGG 0.632856 2.1:+3999081 MS.gene069877:CDS
CCCTTTGAAGAAGTCAACAA+AGG 0.636313 2.1:+4002467 MS.gene069877:CDS
TTGAGAGACAGATTTAGTGA+TGG 0.636747 2.1:-4002290 None:intergenic
TAACCATCCGGGTCATGCGG+CGG 0.638437 2.1:-3999173 None:intergenic
CATCAGATAAATAACCATCC+GGG 0.638735 2.1:-3999184 None:intergenic
TCCGACAGAGTAATGCTACC+AGG 0.640061 2.1:+4001603 MS.gene069877:CDS
GCCAATACCAGTCATTCCAA+AGG 0.641238 2.1:+4002517 MS.gene069877:CDS
ATGACTTGCTACTTGAGTAG+GGG 0.646346 2.1:-4001564 None:intergenic
GGATTCACACCAATGACGCA+AGG 0.652345 2.1:+4002389 MS.gene069877:CDS
TAGGCAAAGGAGACTGGCGA+GGG 0.653435 2.1:+4001513 MS.gene069877:CDS
TAACAACTTCAAGGAAAGGG+GGG 0.654354 2.1:-4002618 None:intergenic
TTTAGGTGTTCCATGGACTG+AGG 0.681364 2.1:+4001454 MS.gene069877:intron
AGCGGTTCTGATCTAAACAG+TGG 0.708017 2.1:+4002686 MS.gene069877:CDS
GTTCAAAACAAGGTGAACCG+GGG 0.719453 2.1:-3999151 None:intergenic
AATGTCTCATCTGAGCATTG+GGG 0.733687 2.1:+4002568 MS.gene069877:CDS
AAGAATGATGAAGAGCAGCG+AGG 0.735471 2.1:-3999112 None:intergenic
GACAGAGTAATGCTACCAGG+AGG 0.755723 2.1:+4001606 MS.gene069877:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTATTTTATTT+TGG + chr2.1:3999521-3999540 MS.gene069877:intron 0.0%
!! AATAAAAAAGTTAATAAGAT+AGG - chr2.1:4002167-4002186 None:intergenic 10.0%
!! TAAAGAATAACAAAATTTAA+TGG - chr2.1:4000306-4000325 None:intergenic 10.0%
!! TTAAAAATTACAAATATTTG+TGG - chr2.1:4001085-4001104 None:intergenic 10.0%
!! CATAGATAAAAAATATGTTA+TGG - chr2.1:4001833-4001852 None:intergenic 15.0%
!! TAAAAATGTTGTTAATAACT+TGG + chr2.1:3999328-3999347 MS.gene069877:intron 15.0%
!! TAGTTTACTAGAAAAATTAA+GGG + chr2.1:4001052-4001071 MS.gene069877:intron 15.0%
!! TTAGTTTACTAGAAAAATTA+AGG + chr2.1:4001051-4001070 MS.gene069877:intron 15.0%
!!! TGTTAAGTTTTTATAAAATG+TGG + chr2.1:4000840-4000859 MS.gene069877:intron 15.0%
!! AAAAAAAACTTAGTGTAACA+GGG + chr2.1:4000936-4000955 MS.gene069877:intron 20.0%
!! AATCTAATCAACAAGAAAAA+AGG - chr2.1:4001406-4001425 None:intergenic 20.0%
!! ATTAATGAACATATCATAAG+CGG + chr2.1:4000150-4000169 MS.gene069877:intron 20.0%
!! GATAATATACAGTTAAGTAT+TGG - chr2.1:4000348-4000367 None:intergenic 20.0%
!! TAAAAAAAACTTAGTGTAAC+AGG + chr2.1:4000935-4000954 MS.gene069877:intron 20.0%
!! TAATGTCATTATTGTTTCAT+TGG + chr2.1:3999707-3999726 MS.gene069877:intron 20.0%
!! TTAAAAAAGAATAGAACAGA+AGG + chr2.1:4000488-4000507 MS.gene069877:intron 20.0%
!! TTATGGTAATTAGCAAATAA+AGG - chr2.1:4002066-4002085 None:intergenic 20.0%
!!! AATATCTGGAATTTATATTG+AGG + chr2.1:4000586-4000605 MS.gene069877:intron 20.0%
!!! TATTTGCTAATTACCATAAA+CGG + chr2.1:4002067-4002086 MS.gene069877:intron 20.0%
!!! TATTTTTGGTTATGGTTTTT+TGG + chr2.1:3999578-3999597 MS.gene069877:intron 20.0%
! AAAAAAACTTAGTGTAACAG+GGG + chr2.1:4000937-4000956 MS.gene069877:intron 25.0%
! AAATGACAACTAAAACGAAT+TGG - chr2.1:4000256-4000275 None:intergenic 25.0%
! AATGACAACTAAAACGAATT+GGG - chr2.1:4000255-4000274 None:intergenic 25.0%
! AGCATAAAAATCATACATCT+AGG - chr2.1:4000524-4000543 None:intergenic 25.0%
! ATAACTGTACTCTGTTTATA+TGG - chr2.1:4001891-4001910 None:intergenic 25.0%
! CATATATATTGCTTATAAGC+TGG - chr2.1:4001798-4001817 None:intergenic 25.0%
! CTTCTGGATTATGAATTAAA+GGG - chr2.1:4001242-4001261 None:intergenic 25.0%
! TTTCAACAAACCAAACAATT+AGG - chr2.1:4000127-4000146 None:intergenic 25.0%
!! ACTTTTGTAACAAGGATATA+AGG + chr2.1:4001209-4001228 MS.gene069877:intron 25.0%
!! ATTTGCTAATTACCATAAAC+GGG + chr2.1:4002068-4002087 MS.gene069877:intron 25.0%
!! GTTGTATTGAACTTTGAAAA+CGG + chr2.1:4000425-4000444 MS.gene069877:intron 25.0%
!! TTTGTCCTTTTGTATGTTTT+AGG + chr2.1:4001437-4001456 MS.gene069877:intron 25.0%
!!! CATTATTGTTTCATTGGTTT+TGG + chr2.1:3999713-3999732 MS.gene069877:intron 25.0%
!!! TATGTTTTGAGAAAATACCT+TGG + chr2.1:4001849-4001868 MS.gene069877:intron 25.0%
!!! TGAGAGGCTTTAAATAAAAT+AGG - chr2.1:4001284-4001303 None:intergenic 25.0%
!!! TTAATTTGGTGCCATTTTTT+GGG + chr2.1:4001160-4001179 MS.gene069877:intron 25.0%
!!! TTTAATTTGGTGCCATTTTT+TGG + chr2.1:4001159-4001178 MS.gene069877:intron 25.0%
AAAGGAAAAACAAAGTTGAG+AGG - chr2.1:4001300-4001319 None:intergenic 30.0%
AACCTGAGTACATTTAAACA+TGG - chr2.1:4000700-4000719 None:intergenic 30.0%
AATGAATTGTTCCTGATATC+TGG + chr2.1:3999548-3999567 MS.gene069877:intron 30.0%
AATGACAAATCCCCAAAAAA+TGG - chr2.1:4001174-4001193 None:intergenic 30.0%
AATGGCACCAAATTAAACTA+TGG - chr2.1:4001156-4001175 None:intergenic 30.0%
ATAGGGGTTGAATTTATAGT+AGG + chr2.1:3999793-3999812 MS.gene069877:intron 30.0%
ATCTGAAGAAAATGTAGAAG+AGG + chr2.1:4002340-4002359 MS.gene069877:CDS 30.0%
ATGACAACTAAAACGAATTG+GGG - chr2.1:4000254-4000273 None:intergenic 30.0%
CAGTTGTATTATGATCAGTT+TGG + chr2.1:4000880-4000899 MS.gene069877:intron 30.0%
CCTTCTGGATTATGAATTAA+AGG - chr2.1:4001243-4001262 None:intergenic 30.0%
CCTTTAATTCATAATCCAGA+AGG + chr2.1:4001240-4001259 MS.gene069877:intron 30.0%
CTAAATACTATGTGTAACAG+TGG + chr2.1:4000906-4000925 MS.gene069877:intron 30.0%
CTACAAGCCATAGTTTAATT+TGG + chr2.1:4001146-4001165 MS.gene069877:intron 30.0%
GAACACCTAAAACATACAAA+AGG - chr2.1:4001445-4001464 None:intergenic 30.0%
GAATTTATAGTAGGACACAA+GGG + chr2.1:3999802-3999821 MS.gene069877:intron 30.0%
GAGTACATTTAAACATGGAA+AGG - chr2.1:4000695-4000714 None:intergenic 30.0%
GCAAATTAAGTTATCCAAAC+TGG - chr2.1:3999859-3999878 None:intergenic 30.0%
GTGTTCCATAAAATAAAACG+TGG - chr2.1:3999607-3999626 None:intergenic 30.0%
TCATCAGATAAATAACCATC+CGG - chr2.1:3999188-3999207 None:intergenic 30.0%
TGAATTTATAGTAGGACACA+AGG + chr2.1:3999801-3999820 MS.gene069877:intron 30.0%
TTATTGCACAGAGAAATAAG+TGG - chr2.1:4000376-4000395 None:intergenic 30.0%
TTCCATGTTTAAATGTACTC+AGG + chr2.1:4000695-4000714 MS.gene069877:intron 30.0%
! ATCTGCTATTTGAAAGTTAC+TGG + chr2.1:4000635-4000654 MS.gene069877:intron 30.0%
! GAACTTTGAAAACGGAAAAT+AGG + chr2.1:4000433-4000452 MS.gene069877:intron 30.0%
! TTTCTTGATGATTGATCCAT+CGG - chr2.1:3999069-3999088 None:intergenic 30.0%
!!! GGTATCCACGTTTTATTTTA+TGG + chr2.1:3999599-3999618 MS.gene069877:intron 30.0%
!!! GTGAAAGGTATTTTTGGTTA+TGG + chr2.1:3999570-3999589 MS.gene069877:intron 30.0%
!!! TAATTTGGTGCCATTTTTTG+GGG + chr2.1:4001161-4001180 MS.gene069877:intron 30.0%
!!! TATCTGGTGAAAGGTATTTT+TGG + chr2.1:3999564-3999583 MS.gene069877:intron 30.0%
AACAAGGGGATAAAAAAGCT+AGG - chr2.1:4001006-4001025 None:intergenic 35.0%
AATACCTTTCACCAGATATC+AGG - chr2.1:3999562-3999581 None:intergenic 35.0%
ACAAGGGGATAAAAAAGCTA+GGG - chr2.1:4001005-4001024 None:intergenic 35.0%
ACAAGTTCATCAACATTGAC+AGG - chr2.1:4002545-4002564 None:intergenic 35.0%
AGTATGACTGCTTTAACAAG+GGG - chr2.1:4001020-4001039 None:intergenic 35.0%
CAAACGAAAAGTAAAGTTGG+TGG + chr2.1:3999374-3999393 MS.gene069877:intron 35.0%
CAACAAGAAAAAAGGATGCT+CGG - chr2.1:4001398-4001417 None:intergenic 35.0%
CAAGTCAGAATATGAACCAA+TGG + chr2.1:4002310-4002329 MS.gene069877:CDS 35.0%
CACCAAACGAAAAGTAAAGT+TGG + chr2.1:3999371-3999390 MS.gene069877:intron 35.0%
CATCAGATAAATAACCATCC+GGG - chr2.1:3999187-3999206 None:intergenic 35.0%
CTCTCAAAATACTAGTACCA+TGG - chr2.1:3999755-3999774 None:intergenic 35.0%
CTTACTTTCATAAGCTCTTC+AGG - chr2.1:3999940-3999959 None:intergenic 35.0%
GAAAATGAGGCAGGTAAATA+AGG - chr2.1:4002425-4002444 None:intergenic 35.0%
GAACATAGATTGTTCTTGGT+TGG + chr2.1:4001479-4001498 MS.gene069877:CDS 35.0%
GAGTATGACTGCTTTAACAA+GGG - chr2.1:4001021-4001040 None:intergenic 35.0%
GGAAGAACATAGATTGTTCT+TGG + chr2.1:4001475-4001494 MS.gene069877:CDS 35.0%
GTGGAAAACGGTTTAATATC+TGG + chr2.1:4000572-4000591 MS.gene069877:intron 35.0%
TCCTAACAACTTCAAGGAAA+GGG - chr2.1:4002624-4002643 None:intergenic 35.0%
TGAGACCATTGGAGTTAATA+GGG + chr2.1:3999776-3999795 MS.gene069877:intron 35.0%
TGAGTATGACTGCTTTAACA+AGG - chr2.1:4001022-4001041 None:intergenic 35.0%
TGGTTATTTATCTGATGACC+CGG + chr2.1:3999190-3999209 MS.gene069877:CDS 35.0%
TTCAATATCCAGTTACAACG+AGG - chr2.1:4002099-4002118 None:intergenic 35.0%
TTGAGACCATTGGAGTTAAT+AGG + chr2.1:3999775-3999794 MS.gene069877:intron 35.0%
TTGAGAGACAGATTTAGTGA+TGG - chr2.1:4002293-4002312 None:intergenic 35.0%
! AAGCTGTGACTTTTGTAACA+AGG + chr2.1:4001201-4001220 MS.gene069877:intron 35.0%
! AGAAAATACCTTGGTGTGTT+TGG + chr2.1:4001858-4001877 MS.gene069877:intron 35.0%
! GGAACACATTTTCGTTTGAT+TGG + chr2.1:3999620-3999639 MS.gene069877:intron 35.0%
! GGTTGTGATTTTCCATTACA+AGG - chr2.1:4002272-4002291 None:intergenic 35.0%
! GTACTGGTGTTAATAAGGAT+AGG - chr2.1:4001774-4001793 None:intergenic 35.0%
! GTCAATGTTGATGAACTTGT+GGG + chr2.1:4002545-4002564 MS.gene069877:CDS 35.0%
! TGTCAATGTTGATGAACTTG+TGG + chr2.1:4002544-4002563 MS.gene069877:CDS 35.0%
! TTACCGACATGAGTTTGTTT+GGG - chr2.1:4000191-4000210 None:intergenic 35.0%
! TTTACCGACATGAGTTTGTT+TGG - chr2.1:4000192-4000211 None:intergenic 35.0%
! TTTGATTGGTCACGAAATGA+CGG + chr2.1:3999634-3999653 MS.gene069877:intron 35.0%
! TTTTCCATATGGCCATCAAT+TGG + chr2.1:4002440-4002459 MS.gene069877:CDS 35.0%
!! AGACTGTTGATTCATTAAGC+AGG + chr2.1:4001372-4001391 MS.gene069877:intron 35.0%
!! ATCAAGAAAAGTGCCAGTAT+GGG + chr2.1:3999080-3999099 MS.gene069877:CDS 35.0%
!! ATTTTGAGAGTTGAGACCAT+TGG + chr2.1:3999765-3999784 MS.gene069877:intron 35.0%
!! CACCAACTTTACTTTTCGTT+TGG - chr2.1:3999376-3999395 None:intergenic 35.0%
!! CACGTAATTTTGTTGTGTCA+AGG + chr2.1:4001540-4001559 MS.gene069877:CDS 35.0%
!! CCTTTGTTGACTTCTTCAAA+GGG - chr2.1:4002470-4002489 None:intergenic 35.0%
!! TCCTTTGTTGACTTCTTCAA+AGG - chr2.1:4002471-4002490 None:intergenic 35.0%
!! TGGTTGATGAACTTCATCAA+AGG - chr2.1:4000098-4000117 None:intergenic 35.0%
!! TGTATGTTTTAGGTGTTCCA+TGG + chr2.1:4001447-4001466 MS.gene069877:intron 35.0%
!! TTTGGTGTTAGATTAACCGA+TGG + chr2.1:3999050-3999069 MS.gene069877:CDS 35.0%
!!! TACCTTTTTTTCTTTCGCTG+CGG - chr2.1:3999244-3999263 None:intergenic 35.0%
AACTAATCTCCTCGAAGACA+TGG - chr2.1:4001324-4001343 None:intergenic 40.0%
AATGAGGCAGGTAAATAAGG+TGG - chr2.1:4002422-4002441 None:intergenic 40.0%
ACACAAGGGAATGTTTACGT+TGG + chr2.1:3999816-3999835 MS.gene069877:intron 40.0%
ACCAAACAATTAGGCTCAAG+TGG - chr2.1:4000118-4000137 None:intergenic 40.0%
ACCACACATTATAAGCGTGT+TGG + chr2.1:3999400-3999419 MS.gene069877:intron 40.0%
ACCACTTGAGCCTAATTGTT+TGG + chr2.1:4000114-4000133 MS.gene069877:intron 40.0%
ACGTTGGTATGGTACGAATT+AGG + chr2.1:3999832-3999851 MS.gene069877:intron 40.0%
AGGGAATGTTTACGTTGGTA+TGG + chr2.1:3999821-3999840 MS.gene069877:intron 40.0%
ATGAGGCAGGTAAATAAGGT+GGG - chr2.1:4002421-4002440 None:intergenic 40.0%
CCTAACAACTTCAAGGAAAG+GGG - chr2.1:4002623-4002642 None:intergenic 40.0%
CTAACAACTTCAAGGAAAGG+GGG - chr2.1:4002622-4002641 None:intergenic 40.0%
CTCCTAACAACTTCAAGGAA+AGG - chr2.1:4002625-4002644 None:intergenic 40.0%
CTTTCTTCCACAAACAACAC+GGG + chr2.1:4000542-4000561 MS.gene069877:intron 40.0%
GAATGAATACTGACCACATC+AGG - chr2.1:4001662-4001681 None:intergenic 40.0%
GAATGTCTCATCTGAGCATT+GGG + chr2.1:4002567-4002586 MS.gene069877:CDS 40.0%
GAGAACTCACAACCTTGTAA+TGG + chr2.1:4002257-4002276 MS.gene069877:CDS 40.0%
GAGACCATTGGAGTTAATAG+GGG + chr2.1:3999777-3999796 MS.gene069877:intron 40.0%
GAGACTACAATGGGATCAAA+TGG + chr2.1:4002368-4002387 MS.gene069877:CDS 40.0%
GCTTTCTTCCACAAACAACA+CGG + chr2.1:4000541-4000560 MS.gene069877:intron 40.0%
GGAAGTAGTATTTGCTCTTC+TGG - chr2.1:4002230-4002249 None:intergenic 40.0%
TAACAACTTCAAGGAAAGGG+GGG - chr2.1:4002621-4002640 None:intergenic 40.0%
TCAACATTGACAGGTTCCTT+TGG - chr2.1:4002536-4002555 None:intergenic 40.0%
TCAACCCCTATTAACTCCAA+TGG - chr2.1:3999784-3999803 None:intergenic 40.0%
TCAAGCAACAAACTCTTGTC+TGG - chr2.1:4000664-4000683 None:intergenic 40.0%
TCCAACACGCTTATAATGTG+TGG - chr2.1:3999404-3999423 None:intergenic 40.0%
TCTCCCAAACAAACTCATGT+CGG + chr2.1:4000185-4000204 MS.gene069877:intron 40.0%
TCTTCAGATGTAGCTTCCAT+TGG - chr2.1:4002329-4002348 None:intergenic 40.0%
TGAGAAACTCAACAGAGTCA+AGG - chr2.1:4001976-4001995 None:intergenic 40.0%
TGATCCCATTGTAGTCTCAT+TGG - chr2.1:4002366-4002385 None:intergenic 40.0%
TGATGGCCATATGGAAAATG+AGG - chr2.1:4002438-4002457 None:intergenic 40.0%
TGTTCCTGATATCTGGTGAA+AGG + chr2.1:3999555-3999574 MS.gene069877:intron 40.0%
TTGCTTATAAGCTGGTGTAC+TGG - chr2.1:4001790-4001809 None:intergenic 40.0%
TTTAGATCAGAACCGCTAAC+TGG - chr2.1:4002683-4002702 None:intergenic 40.0%
TTTCATAAGCTCTTCAGGAG+AGG - chr2.1:3999935-3999954 None:intergenic 40.0%
TTTCCTTTACCATGTCTTCG+AGG + chr2.1:4001312-4001331 MS.gene069877:intron 40.0%
TTTCTTCCACAAACAACACG+GGG + chr2.1:4000543-4000562 MS.gene069877:intron 40.0%
! AAAACCAGAGTTCGATTCGT+GGG - chr2.1:4000073-4000092 None:intergenic 40.0%
! AAAGCAGAAGAAGCATGAAC+CGG - chr2.1:3999212-3999231 None:intergenic 40.0%
! AATGTCTCATCTGAGCATTG+GGG + chr2.1:4002568-4002587 MS.gene069877:CDS 40.0%
! CCCTTTGAAGAAGTCAACAA+AGG + chr2.1:4002467-4002486 MS.gene069877:CDS 40.0%
! CTGGTGTACTGGTGTTAATA+AGG - chr2.1:4001779-4001798 None:intergenic 40.0%
! CTGGTGTTAATAAGGATAGG+AGG - chr2.1:4001771-4001790 None:intergenic 40.0%
! GTACCATGGATTGTACCATA+CGG - chr2.1:3999741-3999760 None:intergenic 40.0%
! TACCTGCCTCATTTTCCATA+TGG + chr2.1:4002429-4002448 MS.gene069877:CDS 40.0%
!! ATGACTTGCTACTTGAGTAG+GGG - chr2.1:4001567-4001586 None:intergenic 40.0%
!! CATCAAGAAAAGTGCCAGTA+TGG + chr2.1:3999079-3999098 MS.gene069877:CDS 40.0%
!! CATGACTTGCTACTTGAGTA+GGG - chr2.1:4001568-4001587 None:intergenic 40.0%
!! GTTGTGTCTGGCTTTAATAC+AGG + chr2.1:4000965-4000984 MS.gene069877:intron 40.0%
!! TCAAGAAAAGTGCCAGTATG+GGG + chr2.1:3999081-3999100 MS.gene069877:CDS 40.0%
!! TCCTTTGGAATGACTGGTAT+TGG - chr2.1:4002521-4002540 None:intergenic 40.0%
!!! GACCCTAGTATTTTGGAGTT+CGG + chr2.1:4000010-4000029 MS.gene069877:intron 40.0%
!!! TCATTGGTTTTGGTTCCGTA+TGG + chr2.1:3999723-3999742 MS.gene069877:intron 40.0%
AAAAGCTAGGCAAAGGAGAC+TGG + chr2.1:4001507-4001526 MS.gene069877:CDS 45.0%
AAAATACTAGGGTCCTTCCC+CGG - chr2.1:4000004-4000023 None:intergenic 45.0%
AAATAACCATCCGGGTCATG+CGG - chr2.1:3999179-3999198 None:intergenic 45.0%
AACGAGGATGAACCCGTTTA+TGG - chr2.1:4002083-4002102 None:intergenic 45.0%
AAGAATGATGAAGAGCAGCG+AGG - chr2.1:3999115-3999134 None:intergenic 45.0%
AGAGGCCAATGAGACTACAA+TGG + chr2.1:4002358-4002377 MS.gene069877:CDS 45.0%
AGGAGAGACATCGTATCATC+AGG + chr2.1:4002487-4002506 MS.gene069877:CDS 45.0%
AGGCCGAACTCCAAAATACT+AGG - chr2.1:4000016-4000035 None:intergenic 45.0%
CAAGGTTGTGAGTTCTCAGA+AGG - chr2.1:4002254-4002273 None:intergenic 45.0%
CATGCAAATGCTCCAGTTAG+CGG + chr2.1:4002668-4002687 MS.gene069877:CDS 45.0%
CCCCTTTCCTTGAAGTTGTT+AGG + chr2.1:4002620-4002639 MS.gene069877:CDS 45.0%
CGGTTCAAAACAAGGTGAAC+CGG - chr2.1:3999156-3999175 None:intergenic 45.0%
CTATGTTCTTCCTCAGTCCA+TGG - chr2.1:4001467-4001486 None:intergenic 45.0%
GAGGCCAATGAGACTACAAT+GGG + chr2.1:4002359-4002378 MS.gene069877:CDS 45.0%
GATTCAAGCCAAACACACCA+AGG - chr2.1:4001869-4001888 None:intergenic 45.0%
GCCAAGCTATACTTACCTCA+AGG - chr2.1:4000036-4000055 None:intergenic 45.0%
GCCAATACCAGTCATTCCAA+AGG + chr2.1:4002517-4002536 MS.gene069877:CDS 45.0%
GCCTTGAGGTAAGTATAGCT+TGG + chr2.1:4000032-4000051 MS.gene069877:intron 45.0%
GGAATGTCTCATCTGAGCAT+TGG + chr2.1:4002566-4002585 MS.gene069877:CDS 45.0%
GGCCGAACTCCAAAATACTA+GGG - chr2.1:4000015-4000034 None:intergenic 45.0%
GGTACGAATTAGGTCCAGTT+TGG + chr2.1:3999842-3999861 MS.gene069877:intron 45.0%
GGTTCAAAACAAGGTGAACC+GGG - chr2.1:3999155-3999174 None:intergenic 45.0%
GTTCAAAACAAGGTGAACCG+GGG - chr2.1:3999154-3999173 None:intergenic 45.0%
GTTCCGTATGGTACAATCCA+TGG + chr2.1:3999735-3999754 MS.gene069877:intron 45.0%
TCAAAGGGAGCTCCAATTGA+TGG - chr2.1:4002455-4002474 None:intergenic 45.0%
TCCTGGTAGCATTACTCTGT+CGG - chr2.1:4001607-4001626 None:intergenic 45.0%
TCTCCTCGAAGACATGGTAA+AGG - chr2.1:4001318-4001337 None:intergenic 45.0%
TCTTTCTTCCGTTAACCCCT+CGG + chr2.1:3999974-3999993 MS.gene069877:intron 45.0%
TTCTTCCACAAACAACACGG+GGG + chr2.1:4000544-4000563 MS.gene069877:intron 45.0%
! AAGCAGAAGAAGCATGAACC+GGG - chr2.1:3999211-3999230 None:intergenic 45.0%
! ACGTTCCAGTCTTTTCGACA+TGG + chr2.1:4001634-4001653 MS.gene069877:CDS 45.0%
! AGCGGTTCTGATCTAAACAG+TGG + chr2.1:4002686-4002705 MS.gene069877:CDS 45.0%
! AGCTCCAATTGATGGCCATA+TGG - chr2.1:4002447-4002466 None:intergenic 45.0%
! ATGGAATGCTGATTGCCTTG+AGG - chr2.1:4002651-4002670 None:intergenic 45.0%
! CAAAACCAGAGTTCGATTCG+TGG - chr2.1:4000074-4000093 None:intergenic 45.0%
! GAGGAGATTAGTTGCTGCAT+CGG + chr2.1:4001331-4001350 MS.gene069877:intron 45.0%
! TCTGGCATCGAAGTTGAATC+TGG - chr2.1:4002212-4002231 None:intergenic 45.0%
! TGGAATGCTGATTGCCTTGA+GGG - chr2.1:4002650-4002669 None:intergenic 45.0%
! TTTAGGTGTTCCATGGACTG+AGG + chr2.1:4001454-4001473 MS.gene069877:intron 45.0%
!! ACAGGTTCCTTTGGAATGAC+TGG - chr2.1:4002527-4002546 None:intergenic 45.0%
!! AGTCTCCTTTGCCTAGCTTT+TGG - chr2.1:4001508-4001527 None:intergenic 45.0%
!! GAATGACTGGTATTGGCTTG+AGG - chr2.1:4002514-4002533 None:intergenic 45.0%
!! GCATGACTTGCTACTTGAGT+AGG - chr2.1:4001569-4001588 None:intergenic 45.0%
!! TTGGTTGGTCTCCAAAAGCT+AGG + chr2.1:4001494-4001513 MS.gene069877:CDS 45.0%
!!! CTTTTTTTCTTTCGCTGCGG+CGG - chr2.1:3999241-3999260 None:intergenic 45.0%
!!! TATTTTGGAGTTCGGCCTTG+AGG + chr2.1:4000018-4000037 MS.gene069877:intron 45.0%
!!! TTTTTTTCTTTCGCTGCGGC+GGG - chr2.1:3999240-3999259 None:intergenic 45.0%
AAATACTAGGGTCCTTCCCC+GGG - chr2.1:4000003-4000022 None:intergenic 50.0%
AACTTCAAGGAAAGGGGGGA+AGG - chr2.1:4002617-4002636 None:intergenic 50.0%
ACAGGGGTAACTGTTGTGTC+TGG + chr2.1:4000953-4000972 MS.gene069877:intron 50.0%
ACGGACATGTCCGTGAGTTA+TGG - chr2.1:3998995-3999014 None:intergenic 50.0%
AGGAGCCATGTCGAAAAGAC+TGG - chr2.1:4001642-4001661 None:intergenic 50.0%
AGTTGTTAGGAGAGCCCTCA+AGG + chr2.1:4002633-4002652 MS.gene069877:CDS 50.0%
CGCCGCAGCGAAAGAAAAAA+AGG + chr2.1:3999239-3999258 MS.gene069877:CDS 50.0%
GACAGAGTAATGCTACCAGG+AGG + chr2.1:4001606-4001625 MS.gene069877:CDS 50.0%
GATGAAGAGCAGCGAGGTTT+AGG - chr2.1:3999109-3999128 None:intergenic 50.0%
GCAACAACGGCCATAACTCA+CGG + chr2.1:3998982-3999001 MS.gene069877:CDS 50.0%
GGATTCACACCAATGACGCA+AGG + chr2.1:4002389-4002408 MS.gene069877:CDS 50.0%
GGCCATATGGAAAATGAGGC+AGG - chr2.1:4002434-4002453 None:intergenic 50.0%
GGGAAGAATCCTTGCGTCAT+TGG - chr2.1:4002401-4002420 None:intergenic 50.0%
GGGCTCTCCTAACAACTTCA+AGG - chr2.1:4002630-4002649 None:intergenic 50.0%
GGGTTCATCCTCGTTGTAAC+TGG + chr2.1:4002088-4002107 MS.gene069877:intron 50.0%
GGTCTCCAAAAGCTAGGCAA+AGG + chr2.1:4001500-4001519 MS.gene069877:CDS 50.0%
GGTTGTGAGTTCTCAGAAGG+TGG - chr2.1:4002251-4002270 None:intergenic 50.0%
GTAGCAAAGTAGCAGCCTTC+TGG - chr2.1:4001258-4001277 None:intergenic 50.0%
TCAACCCACGAATCGAACTC+TGG + chr2.1:4000066-4000085 MS.gene069877:intron 50.0%
TCATGCGGCGGTTCAAAACA+AGG - chr2.1:3999164-3999183 None:intergenic 50.0%
TCCGACAGAGTAATGCTACC+AGG + chr2.1:4001603-4001622 MS.gene069877:CDS 50.0%
TGCTCTCACTGCAGCAACAA+CGG + chr2.1:3998969-3998988 MS.gene069877:CDS 50.0%
TTTCGACATGGCTCCTGATG+TGG + chr2.1:4001646-4001665 MS.gene069877:CDS 50.0%
! CGCTAACTGGAGCATTTGCA+TGG - chr2.1:4002670-4002689 None:intergenic 50.0%
! GAGGTTTAGGTTCCCCATAC+TGG - chr2.1:3999096-3999115 None:intergenic 50.0%
! GGGGAAGGACCCTAGTATTT+TGG + chr2.1:4000003-4000022 MS.gene069877:intron 50.0%
!! TCTGAGCATTGGGGAAACAC+AGG + chr2.1:4002577-4002596 MS.gene069877:CDS 50.0%
AATACTAGGGTCCTTCCCCG+GGG - chr2.1:4000002-4000021 None:intergenic 55.0%
ACCAAAAAGCTTCACCCCGC+CGG - chr2.1:3999036-3999055 None:intergenic 55.0%
ACTGGAACGTCTCTTCCTCC+TGG - chr2.1:4001624-4001643 None:intergenic 55.0%
TAGGCAAAGGAGACTGGCGA+GGG + chr2.1:4001513-4001532 MS.gene069877:CDS 55.0%
! CACAAACAACACGGGGGTGT+CGG + chr2.1:4000550-4000569 MS.gene069877:intron 55.0%
! TTTTGAACCGCCGCATGACC+CGG + chr2.1:3999166-3999185 MS.gene069877:CDS 55.0%
CAAGGTGAACCGGGGTTCAG+CGG - chr2.1:3999146-3999165 None:intergenic 60.0%
CTAGGCAAAGGAGACTGGCG+AGG + chr2.1:4001512-4001531 MS.gene069877:CDS 60.0%
TAACCATCCGGGTCATGCGG+CGG - chr2.1:3999176-3999195 None:intergenic 60.0%
TCTTCTTCGCCGCTGAACCC+CGG + chr2.1:3999134-3999153 MS.gene069877:CDS 60.0%
!! AAACAACACGGGGGTGTCGG+TGG + chr2.1:4000553-4000572 MS.gene069877:intron 60.0%
!! ACGGGGGTGTCGGTGGAAAA+CGG + chr2.1:4000560-4000579 MS.gene069877:intron 60.0%
!! CGACACCCCCGTGTTGTTTG+TGG - chr2.1:4000552-4000571 None:intergenic 60.0%
CCGGGGAACCGAGGGGTTAA+CGG - chr2.1:3999985-4000004 None:intergenic 65.0%
CCGTTAACCCCTCGGTTCCC+CGG + chr2.1:3999982-4000001 MS.gene069877:intron 65.0%
CGTTAACCCCTCGGTTCCCC+GGG + chr2.1:3999983-4000002 MS.gene069877:intron 65.0%
GTTAACCCCTCGGTTCCCCG+GGG + chr2.1:3999984-4000003 MS.gene069877:intron 65.0%
! GCCGGCGGGGTGAAGCTTTT+TGG + chr2.1:3999032-3999051 MS.gene069877:CDS 65.0%
AAGCTTCACCCCGCCGGCAG+CGG - chr2.1:3999030-3999049 None:intergenic 70.0%
GAACCGCCGCATGACCCGGA+TGG + chr2.1:3999170-3999189 MS.gene069877:CDS 70.0%
GTCCTTCCCCGGGGAACCGA+GGG - chr2.1:3999993-4000012 None:intergenic 70.0%
TCCTTCCCCGGGGAACCGAG+GGG - chr2.1:3999992-4000011 None:intergenic 70.0%
ACCCCTCGGTTCCCCGGGGA+AGG + chr2.1:3999988-4000007 MS.gene069877:intron 75.0%
GCAGCGGCGGCGCTTCTCGA+CGG - chr2.1:3999014-3999033 None:intergenic 75.0%
GGTCCTTCCCCGGGGAACCG+AGG - chr2.1:3999994-4000013 None:intergenic 75.0%
!! TCGAGAAGCGCCGCCGCTGC+CGG + chr2.1:3999014-3999033 MS.gene069877:CDS 75.0%
! CTTCACCCCGCCGGCAGCGG+CGG - chr2.1:3999027-3999046 None:intergenic 80.0%
!!! AGAAGCGCCGCCGCTGCCGG+CGG + chr2.1:3999017-3999036 MS.gene069877:CDS 80.0%
!! AAGCGCCGCCGCTGCCGGCG+GGG + chr2.1:3999019-3999038 MS.gene069877:CDS 85.0%
!!! GAAGCGCCGCCGCTGCCGGC+GGG + chr2.1:3999018-3999037 MS.gene069877:CDS 85.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 3998957 4002736 3998957 ID=MS.gene069877
chr2.1 mRNA 3998957 4002736 3998957 ID=MS.gene069877.t1;Parent=MS.gene069877
chr2.1 exon 3998957 3999260 3998957 ID=MS.gene069877.t1.exon1;Parent=MS.gene069877.t1
chr2.1 CDS 3998957 3999260 3998957 ID=cds.MS.gene069877.t1;Parent=MS.gene069877.t1
chr2.1 exon 4001459 4001667 4001459 ID=MS.gene069877.t1.exon2;Parent=MS.gene069877.t1
chr2.1 CDS 4001459 4001667 4001459 ID=cds.MS.gene069877.t1;Parent=MS.gene069877.t1
chr2.1 exon 4002206 4002736 4002206 ID=MS.gene069877.t1.exon3;Parent=MS.gene069877.t1
chr2.1 CDS 4002206 4002736 4002206 ID=cds.MS.gene069877.t1;Parent=MS.gene069877.t1
Gene Sequence

>MS.gene069877

ATGACTCGGCGTTGCTCTCACTGCAGCAACAACGGCCATAACTCACGGACATGTCCGTCGAGAAGCGCCGCCGCTGCCGGCGGGGTGAAGCTTTTTGGTGTTAGATTAACCGATGGATCAATCATCAAGAAAAGTGCCAGTATGGGGAACCTAAACCTCGCTGCTCTTCATCATTCTTCTTCTTCGCCGCTGAACCCCGGTTCACCTTGTTTTGAACCGCCGCATGACCCGGATGGTTATTTATCTGATGACCCGGTTCATGCTTCTTCTGCTTTCGCTACCCGCCGCAGCGAAAGAAAAAAAGGTATTTGTTTTTATTGTTTTTTGAACATAATCATCATGATTATTTGCATTTAATCTTGTTTTTAATTTAAAAATGTTGTTAATAACTTGGATTAATTAATTTTTTAATTGCACCAAACGAAAAGTAAAGTTGGTGGAAAACCACACATTATAAGCGTGTTGGATTTGCTTTTTAATTTCTTTGATTGTGAAATCTTAATTGTTTTTTATTTTTTGTACGCAAAACACTTCATAAATGTATATAGTTAAATATGATGATTTTTTTTTTTTTTATTTTATTTTGGAAAAAATGAATTGTTCCTGATATCTGGTGAAAGGTATTTTTGGTTATGGTTTTTTGGTATCCACGTTTTATTTTATGGAACACATTTTCGTTTGATTGGTCACGAAATGACGGCATTTAATGTTATTAATGTTTATGAGTAATTTGAATAGATATGAAACATTTAATGTCATTATTGTTTCATTGGTTTTGGTTCCGTATGGTACAATCCATGGTACTAGTATTTTGAGAGTTGAGACCATTGGAGTTAATAGGGGTTGAATTTATAGTAGGACACAAGGGAATGTTTACGTTGGTATGGTACGAATTAGGTCCAGTTTGGATAACTTAATTTGCAACTTATAAGTTTGTCATAAACAATTTTCATAATCTATAAACTGTTTTCATAACCTCTCCTGAAGAGCTTATGAAAGTAAGTTGAATTTTTTTTTTCTTTCTTCCGTTAACCCCTCGGTTCCCCGGGGAAGGACCCTAGTATTTTGGAGTTCGGCCTTGAGGTAAGTATAGCTTGGCGAAGAATTGTTCAACCCACGAATCGAACTCTGGTTTTGTCCTTTGATGAAGTTCATCAACCACTTGAGCCTAATTGTTTGGTTTGTTGAAAACAATTAATGAACATATCATAAGCGGTTTTCAATATGTTCTCCCAAACAAACTCATGTCGGTAAATAAACTCAAATAAGTCAATTCAAACAAACTCTTACTACTCCCCAATTCGTTTTAGTTGTCATTTTAAAGTTATTTACATATACGAAAACAACCATTAAATTTTGTTATTCTTTATGTAATTATATGTCTTTTTCCAATACTTAACTGTATATTATCTTATTCCACTTATTTCTCTGTGCAATAAATAGTGAAGAGTATTATTGAAAAAATAATGTTGTATTGAACTTTGAAAACGGAAAATAGGTAAAAATAAAAATTCTTCTACAAAAGTGACAGTTAAAAAAGAATAGAACAGAAGGAGTATATACACCTAGATGTATGATTTTTATGCTTTCTTCCACAAACAACACGGGGGTGTCGGTGGAAAACGGTTTAATATCTGGAATTTATATTGAGGTTTAAGCAATTCACTATAACAAGCAAATCTGCTATTTGAAAGTTACTGGTCTCCAGACAAGAGTTTGTTGCTTGATTAACTTGCCTTTCCATGTTTAAATGTACTCAGGTTTTGAGAAATATTATATGTTAAGTACATAAATTATTAAATAGAGTAGTAAACATATTTAATATCTTGCAGATAAAAAAATGTTGAACATCTTCATTATTCTGTTAGAAGAATTACGTGTATTGTTAAGTTTTTATAAAATGTGGCAAACTGCTGTACATATCAGTTGTATTATGATCAGTTTGGCAGCTAAATACTATGTGTAACAGTGGTCTTTTTAAAAAAAACTTAGTGTAACAGGGGTAACTGTTGTGTCTGGCTTTAATACAGGTTGCTGAATCATGTCCCTAGCTTTTTTATCCCCTTGTTAAAGCAGTCATACTCATTTGTTTTGTTAGTTTACTAGAAAAATTAAGGGCTAAATGCCACAAATATTTGTAATTTTTAATTGTCAAATCATTTTGTTACTATTTATATATTTTTTATATTCTACAAGCCATAGTTTAATTTGGTGCCATTTTTTGGGGATTTGTCATTTGCTTGAAAGCTGTGACTTTTGTAACAAGGATATAAGGTTCTAATCCCTTTAATTCATAATCCAGAAGGCTGCTACTTTGCTACTTACCTATTTTATTTAAAGCCTCTCAACTTTGTTTTTCCTTTACCATGTCTTCGAGGAGATTAGTTGCTGCATCGGATTGTTGCATTTTAACAAAGACTGTTGATTCATTAAGCAGGCCGAGCATCCTTTTTTCTTGTTGATTAGATTAGTTTATTTAATTTGTCCTTTTGTATGTTTTAGGTGTTCCATGGACTGAGGAAGAACATAGATTGTTCTTGGTTGGTCTCCAAAAGCTAGGCAAAGGAGACTGGCGAGGGATAGCACGTAATTTTGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCACAAAAGTACTTTATCCGACAGAGTAATGCTACCAGGAGGAAGAGACGTTCCAGTCTTTTCGACATGGCTCCTGATGTGGTCAGTATTCATTCATTCATCATTTCTAATTGAGCAATCTTCATGCAGACACATACGTATGTCTGCTACATATATATTGTCTGATAGAGAGTGAAAGTGTCCTCCTATCCTTATTAACACCAGTACACCAGCTTATAAGCAATATATATGTTATCATCACTACCATAACATATTTTTTATCTATGTTTTGAGAAAATACCTTGGTGTGTTTGGCTTGAATCCATATAAACAGAGTACAGTTATAAACTAGACTACTAGAGAAATCTGTTGAGATAGTCTTTCATATTTATCAGAGCATGATGATGCCTTGACTCTGTTGAGTTTCTCAACAATAGTTCTTGCTTCGTAAGACAAAAGATTATTTTTTTTTAATTATAGTGACACATTTACTGAAGCCTTTATTTGCTAATTACCATAAACGGGTTCATCCTCGTTGTAACTGGATATTGAATTTTTTATTATGAGTTATGTTTGTTGAGTATTATGTAGTCATTTTCCTATCTTATTAACTTTTTTATTTTTTGAAATGATATGTCAGTGTCCAGATTCAACTTCGATGCCAGAAGAGCAAATACTACTTCCACCTTCTGAGAACTCACAACCTTGTAATGGAAAATCACAACCATCACTAAATCTGTCTCTCAAGTCAGAATATGAACCAATGGAAGCTACATCTGAAGAAAATGTAGAAGAGGCCAATGAGACTACAATGGGATCAAATGGATTCACACCAATGACGCAAGGATTCTTCCCACCTTATTTACCTGCCTCATTTTCCATATGGCCATCAATTGGAGCTCCCTTTGAAGAAGTCAACAAAGGAGAGACATCGTATCATCAGGTCCTCAAGCCAATACCAGTCATTCCAAAGGAACCTGTCAATGTTGATGAACTTGTGGGAATGTCTCATCTGAGCATTGGGGAAACACAGGCTCTTGATAGAGAGCCTTCCCCCCTTTCCTTGAAGTTGTTAGGAGAGCCCTCAAGGCAATCAGCATTCCATGCAAATGCTCCAGTTAGCGGTTCTGATCTAAACAGTGGCAAGAACAACGCCATTCAAGCAGTTTGA
Protein sequence

>MS.gene069877.t1

MTRRCSHCSNNGHNSRTCPSRSAAAAGGVKLFGVRLTDGSIIKKSASMGNLNLAALHHSSSSPLNPGSPCFEPPHDPDGYLSDDPVHASSAFATRRSERKKGVPWTEEEHRLFLVGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMAPDVCPDSTSMPEEQILLPPSENSQPCNGKSQPSLNLSLKSEYEPMEATSEENVEEANETTMGSNGFTPMTQGFFPPYLPASFSIWPSIGAPFEEVNKGETSYHQVLKPIPVIPKEPVNVDELVGMSHLSIGETQALDREPSPLSLKLLGEPSRQSAFHANAPVSGSDLNSGKNNAIQAV