AlfalfaGEDB | MS.gene069902

M. sativa cultivar XinJiangDaYe / MS.gene069902

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069902.t1	XP_003597642.1	92.7	399	22	1	1	399	1	392	7.50E-205	723

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069902.t1	Q8S3D2	55.3	295	110	12	105	391	86	366	1.5e-60	235.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069902.t1	G7IHW4	92.7	399	22	1	1	399	1	392	5.4e-205	723.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene069902.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069902.t1	MTR_2g100490	92.732	399	22	1	1	399	1	392	0.0	714
MS.gene069902.t1	MTR_8g015450	53.409	440	131	23	1	388	1	418	1.99e-107	323
MS.gene069902.t1	MTR_3g101810	52.679	112	52	1	268	379	143	253	2.70e-35	131
MS.gene069902.t1	MTR_8g093500	62.366	93	34	1	269	361	87	178	5.27e-34	127
MS.gene069902.t1	MTR_5g017210	61.682	107	39	2	258	363	98	203	1.58e-28	112
MS.gene069902.t1	MTR_7g069590	52.941	68	32	0	303	370	32	99	4.72e-20	86.7
MS.gene069902.t1	MTR_1g018090	62.963	54	20	0	306	359	283	336	4.43e-17	82.4
MS.gene069902.t1	MTR_5g079500	58.929	56	23	0	304	359	225	280	2.08e-16	79.7
MS.gene069902.t1	MTR_1g106460	49.254	67	34	0	293	359	234	300	3.90e-16	79.3
MS.gene069902.t1	MTR_5g005110	55.357	56	25	0	304	359	231	286	1.34e-15	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069902.t1	AT3G21330	56.997	293	108	12	105	391	86	366	5.20e-86	266
MS.gene069902.t1	AT4G00120	61.798	89	33	1	272	360	88	175	1.16e-29	114
MS.gene069902.t1	AT3G50330	52.941	136	60	4	227	360	49	182	3.90e-26	105
MS.gene069902.t1	AT5G67060	64.130	92	32	1	269	360	83	173	6.12e-26	105
MS.gene069902.t1	AT5G67060	64.130	92	32	1	269	360	95	185	7.54e-26	105
MS.gene069902.t1	AT5G09750	62.366	93	34	1	269	361	92	183	3.24e-24	100
MS.gene069902.t1	AT5G01305	47.872	94	46	1	295	385	35	128	5.00e-22	92.4
MS.gene069902.t1	AT1G66470	39.450	109	64	1	251	359	151	257	2.66e-17	82.4
MS.gene069902.t1	AT5G37800	46.067	89	40	1	279	359	175	263	5.01e-17	81.6
MS.gene069902.t1	AT5G43175	46.269	67	36	0	293	359	128	194	2.07e-16	78.2

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Find 85 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGATGAATTTGGTTGC+TGG	0.410865	2.1:-4314369	None:intergenic
AAAGAATAAGTGAGAGGATT+AGG	0.226641	2.1:+4314578	MS.gene069902:CDS
AAAGTCAAAGAAACCAAGAT+GGG	0.607623	2.1:+4314312	MS.gene069902:CDS
AAATGATCCACAAACTGTGG+CGG	0.666151	2.1:+4314540	MS.gene069902:CDS
AAATTGATATTTGATGAACC+AGG	0.643576	2.1:-4314346	None:intergenic
AACCAGGAGCTAGAAACAGT+TGG	0.559225	2.1:+4313783	MS.gene069902:CDS
AACTTTAGTGCAGTTTCTTC+TGG	0.287864	2.1:+4314055	MS.gene069902:CDS
AAGAAACTTGAGGTAATTAG+CGG	0.544653	2.1:-4314662	None:intergenic
AAGAATAAGTGAGAGGATTA+GGG	0.401274	2.1:+4314579	MS.gene069902:CDS
AAGGAGAAGGCTATGTTTGT+AGG	0.304724	2.1:-4314748	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAATAAGTGAGAGGATT+AGG	+	chr2.1:4314578-4314597	MS.gene069902:CDS	30.0%
AAAGTCAAAGAAACCAAGAT+GGG	+	chr2.1:4314312-4314331	MS.gene069902:CDS	30.0%
AAGAAACTTGAGGTAATTAG+CGG	-	chr2.1:4314665-4314684	None:intergenic	30.0%
AAGAATAAGTGAGAGGATTA+GGG	+	chr2.1:4314579-4314598	MS.gene069902:CDS	30.0%
ACTAATTCTGTTCAAGATGA+TGG	+	chr2.1:4313989-4314008	MS.gene069902:CDS	30.0%
ACTGCAAAAACAGAAACTTA+TGG	+	chr2.1:4314032-4314051	MS.gene069902:CDS	30.0%
GAATATTGGATGTTGACATT+AGG	-	chr2.1:4314799-4314818	None:intergenic	30.0%
GACAATGAAACTGATGAATT+TGG	-	chr2.1:4314379-4314398	None:intergenic	30.0%
TCTTCTTCTTCTACTGAATT+TGG	+	chr2.1:4314262-4314281	MS.gene069902:CDS	30.0%
TTTGCAGTCAGAAAAAATCA+TGG	-	chr2.1:4314020-4314039	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	4313629	4314828	4313629	ID=MS.gene069902
chr2.1	mRNA	4313629	4314828	4313629	ID=MS.gene069902.t1;Parent=MS.gene069902
chr2.1	exon	4313629	4314828	4313629	ID=MS.gene069902.t1.exon1;Parent=MS.gene069902.t1
chr2.1	CDS	4313629	4314828	4313629	ID=cds.MS.gene069902.t1;Parent=MS.gene069902.t1

Gene Sequence

>MS.gene069902

ATGGATTGTCTTAGCTGGGATGATGATACACAACTTGTTACCAACATACCAATCTTGTGGAACACTCAACCACAAGACTTTGCAAGAGACTATTCAATGTCCAACCCAAGTTCAAGTGTTTTTAACTATCAAATGCAAGAAATGCAGAAGGTTCAACCAGGAGCTAGAAACAGTTGGGAAGAAACTTTAATATTCCAATCATACCCTTCACTTTCAGTCAATATCGATCCACCTAACAATTATGTGCCACTGCCTGATTTCAACATGGCCCACCAACCAATCAGCAAGAGTACTACTACATGCTCACTTGAATCATCACTTGATTGTTTGCTTTCAGCCACTACAAACAGTAACACTGACACTAATTCTGTTCAAGATGATGGAATTTCCATGATTTTTTCTGACTGCAAAAACAGAAACTTATGGAACTTTAGTGCAGTTTCTTCTGGTGAATCAGAGCGTACAAATGCTAGAAACAAGGACATGCAGGATGCATTCAAGGAACTGGATCAGGAAATAGTATCTCCAGCTTCCTCAGATCAAGGTAAAATCATTGATAATTCCATGGTTCATTCCACAAAAAGGACTAATATTGATCAATATGATCCTTGCTTCAGCATTACTACTCAGAATTCTTCTTCTTCTACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCAAAGTCAAAGAAACCAAGATGGGATAATAAGTGTCCTGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCAGTTTCATTGTCAAATTCATCCTTTGAAGAGCCTGATCCAGAGGCAATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCATTTAGGCCGGTGACGAATTTGGGTTTGGAAGTGATGGAAAAGCCTAAAAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCGGCTAGGCAAAGAAGGGAAAGAATAAGTGAGAGGATTAGGGTCTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCCGCTAATTACCTCAAGTTTCTTAGAGCACAAGTCAAAGCACTGGAGAATCTAGGAAACAAGATTGATACAATGAATAATTGTTCTCCTACAAACATAGCCTTCTCCTTCAACCCATCGATTCCCATGCAAAACCCTAATGTCAACATCCAATATTCCCATGATTGA

Protein sequence

>MS.gene069902.t1

MDCLSWDDDTQLVTNIPILWNTQPQDFARDYSMSNPSSSVFNYQMQEMQKVQPGARNSWEETLIFQSYPSLSVNIDPPNNYVPLPDFNMAHQPISKSTTTCSLESSLDCLLSATTNSNTDTNSVQDDGISMIFSDCKNRNLWNFSAVSSGESERTNARNKDMQDAFKELDQEIVSPASSDQGKIIDNSMVHSTKRTNIDQYDPCFSITTQNSSSSTEFGFKLISEKPPKSKKPRWDNKCPGSSNINFQQPNSSVSLSNSSFEEPDPEAIAQMKEMIYRAAAFRPVTNLGLEVMEKPKRKNVKISNDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRAQVKALENLGNKIDTMNNCSPTNIAFSFNPSIPMQNPNVNIQYSHD