AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069902

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069902.t1 MTR_2g100490 92.732 399 22 1 1 399 1 392 0.0 714
MS.gene069902.t1 MTR_8g015450 53.409 440 131 23 1 388 1 418 1.99e-107 323
MS.gene069902.t1 MTR_3g101810 52.679 112 52 1 268 379 143 253 2.70e-35 131
MS.gene069902.t1 MTR_8g093500 62.366 93 34 1 269 361 87 178 5.27e-34 127
MS.gene069902.t1 MTR_5g017210 61.682 107 39 2 258 363 98 203 1.58e-28 112
MS.gene069902.t1 MTR_7g069590 52.941 68 32 0 303 370 32 99 4.72e-20 86.7
MS.gene069902.t1 MTR_1g018090 62.963 54 20 0 306 359 283 336 4.43e-17 82.4
MS.gene069902.t1 MTR_5g079500 58.929 56 23 0 304 359 225 280 2.08e-16 79.7
MS.gene069902.t1 MTR_1g106460 49.254 67 34 0 293 359 234 300 3.90e-16 79.3
MS.gene069902.t1 MTR_5g005110 55.357 56 25 0 304 359 231 286 1.34e-15 77.8
MS.gene069902.t1 MTR_1g106470 55.357 56 25 0 304 359 203 258 2.46e-15 76.3
MS.gene069902.t1 MTR_3g103030 50.794 63 31 0 297 359 229 291 6.22e-15 75.5
MS.gene069902.t1 MTR_2g067000 58.491 53 22 0 308 360 168 220 6.92e-14 72.0
MS.gene069902.t1 MTR_1g060700 59.259 54 22 0 307 360 357 410 8.42e-14 73.2
MS.gene069902.t1 MTR_4g131160 55.357 56 25 0 304 359 203 258 1.32e-13 72.4
MS.gene069902.t1 MTR_4g131160 55.357 56 25 0 304 359 206 261 1.33e-13 72.4
MS.gene069902.t1 MTR_1g080890 55.357 56 25 0 304 359 200 255 3.53e-13 70.5
MS.gene069902.t1 MTR_1g106480 52.941 51 24 0 309 359 81 131 7.14e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069902.t1 AT3G21330 56.997 293 108 12 105 391 86 366 5.20e-86 266
MS.gene069902.t1 AT4G00120 61.798 89 33 1 272 360 88 175 1.16e-29 114
MS.gene069902.t1 AT3G50330 52.941 136 60 4 227 360 49 182 3.90e-26 105
MS.gene069902.t1 AT5G67060 64.130 92 32 1 269 360 83 173 6.12e-26 105
MS.gene069902.t1 AT5G67060 64.130 92 32 1 269 360 95 185 7.54e-26 105
MS.gene069902.t1 AT5G09750 62.366 93 34 1 269 361 92 183 3.24e-24 100
MS.gene069902.t1 AT5G01305 47.872 94 46 1 295 385 35 128 5.00e-22 92.4
MS.gene069902.t1 AT1G66470 39.450 109 64 1 251 359 151 257 2.66e-17 82.4
MS.gene069902.t1 AT5G37800 46.067 89 40 1 279 359 175 263 5.01e-17 81.6
MS.gene069902.t1 AT5G43175 46.269 67 36 0 293 359 128 194 2.07e-16 78.2
MS.gene069902.t1 AT4G33880 53.226 62 29 0 298 359 267 328 2.86e-16 80.1
MS.gene069902.t1 AT2G14760 53.226 62 29 0 298 359 238 299 4.79e-16 79.0
MS.gene069902.t1 AT1G27740 50.000 62 31 0 298 359 168 229 3.87e-15 75.1
MS.gene069902.t1 AT4G30980 54.545 66 29 1 295 359 127 192 7.00e-15 75.5
MS.gene069902.t1 AT2G24260 57.143 56 24 0 304 359 42 97 9.79e-15 73.9
MS.gene069902.t1 AT4G30980 54.545 66 29 1 295 359 175 240 1.00e-14 75.5
MS.gene069902.t1 AT2G24260 57.143 56 24 0 304 359 145 200 1.85e-14 74.3
MS.gene069902.t1 AT5G58010 49.275 69 34 1 292 359 93 161 3.96e-13 70.1
MS.gene069902.t1 AT2G14760 44.000 75 29 1 298 359 238 312 6.42e-13 69.7

Find 85 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTCTTCTACTGAATT+TGG 0.150846 2.1:+4314262 MS.gene069902:CDS
CATCTTGGTTTCTTTGACTT+TGG 0.197671 2.1:-4314310 None:intergenic
ATTTAGGCCGGTGACGAATT+TGG 0.200299 2.1:+4314471 MS.gene069902:CDS
AAAGAATAAGTGAGAGGATT+AGG 0.226641 2.1:+4314578 MS.gene069902:CDS
GATTTCAATCATGGGAATAT+TGG 0.228711 2.1:-4314810 None:intergenic
GACAATGAAACTGATGAATT+TGG 0.244336 2.1:-4314376 None:intergenic
CCATGGTTCATTCCACAAAA+AGG 0.278020 2.1:+4314191 MS.gene069902:CDS
AATATTGGATGTTGACATTA+GGG 0.282359 2.1:-4314795 None:intergenic
AACTTTAGTGCAGTTTCTTC+TGG 0.287864 2.1:+4314055 MS.gene069902:CDS
AAGGAGAAGGCTATGTTTGT+AGG 0.304724 2.1:-4314748 None:intergenic
TTCATTTGTGCTATTGCCTC+TGG 0.321358 2.1:-4314424 None:intergenic
TCCCAACTGTTTCTAGCTCC+TGG 0.321564 2.1:-4313785 None:intergenic
GAATATTGGATGTTGACATT+AGG 0.325949 2.1:-4314796 None:intergenic
TTTAGGCCGGTGACGAATTT+GGG 0.332170 2.1:+4314472 MS.gene069902:CDS
AAGTGATGGAAAAGCCTAAA+AGG 0.336703 2.1:+4314500 MS.gene069902:CDS
TGCCTAGCCGCCACAGTTTG+TGG 0.350175 2.1:-4314547 None:intergenic
CTTGGTTTCTTTGACTTTGG+TGG 0.356806 2.1:-4314307 None:intergenic
GATGATAATGATTTCAATCA+TGG 0.362071 2.1:-4314819 None:intergenic
TGTGCTATTGCCTCTGGATC+AGG 0.366599 2.1:-4314418 None:intergenic
TATATAGAGCTGCAGCATTT+AGG 0.373879 2.1:+4314455 MS.gene069902:CDS
GTCTTGCAGAAGATTGTTCC+TGG 0.394948 2.1:+4314601 MS.gene069902:CDS
AAGAATAAGTGAGAGGATTA+GGG 0.401274 2.1:+4314579 MS.gene069902:CDS
TACATATGGATTGTCTTAGC+TGG 0.402802 2.1:+4313624 None:intergenic
AAACTGATGAATTTGGTTGC+TGG 0.410865 2.1:-4314369 None:intergenic
GCCGGTGACGAATTTGGGTT+TGG 0.412280 2.1:+4314477 MS.gene069902:CDS
GCAGGATGCATTCAAGGAAC+TGG 0.434491 2.1:+4314114 MS.gene069902:CDS
ACTAATTCTGTTCAAGATGA+TGG 0.443976 2.1:+4313989 MS.gene069902:CDS
TGCATTCAAGGAACTGGATC+AGG 0.444418 2.1:+4314120 MS.gene069902:CDS
CATTGATGCAGTGTCCATCT+TGG 0.445318 2.1:-4314629 None:intergenic
TACTCTTGCTGATTGGTTGG+TGG 0.446984 2.1:-4313898 None:intergenic
CTGTGGCGGCTAGGCAAAGA+AGG 0.454660 2.1:+4314554 MS.gene069902:CDS
CTGAAAGTGAAGGGTATGAT+TGG 0.457359 2.1:-4313823 None:intergenic
CATGGGAATCGATGGGTTGA+AGG 0.461459 2.1:-4314767 None:intergenic
GGACACTTATTATCCCATCT+TGG 0.463511 2.1:-4314325 None:intergenic
TTACCTTGATCTGAGGAAGC+TGG 0.471387 2.1:-4314154 None:intergenic
GTAGTAGTACTCTTGCTGAT+TGG 0.471486 2.1:-4313905 None:intergenic
GGACATGCAGGATGCATTCA+AGG 0.474039 2.1:+4314108 MS.gene069902:CDS
GTCAAAGCACTGGAGAATCT+AGG 0.474273 2.1:+4314694 MS.gene069902:CDS
GGCAGTGGCACATAATTGTT+AGG 0.478891 2.1:-4313860 None:intergenic
GGTTGAGTGTTCCACAAGAT+TGG 0.479415 2.1:-4313677 None:intergenic
TGCTAGAAACAAGGACATGC+AGG 0.479742 2.1:+4314096 MS.gene069902:CDS
TGGTGGGCCATGTTGAAATC+AGG 0.494073 2.1:-4313881 None:intergenic
ACTCTTGCTGATTGGTTGGT+GGG 0.498014 2.1:-4313897 None:intergenic
GTTCCACAAGATTGGTATGT+TGG 0.503170 2.1:-4313669 None:intergenic
TAGTACTCTTGCTGATTGGT+TGG 0.516116 2.1:-4313901 None:intergenic
ACCAGGAGCTAGAAACAGTT+GGG 0.522136 2.1:+4313784 MS.gene069902:CDS
ACATATGGATTGTCTTAGCT+GGG 0.522229 2.1:+4313625 None:intergenic
GAATTTGGGTTTGGAAGTGA+TGG 0.527963 2.1:+4314486 MS.gene069902:CDS
TCTCCAGCTTCCTCAGATCA+AGG 0.534533 2.1:+4314151 MS.gene069902:CDS
TTACCAACATACCAATCTTG+TGG 0.535200 2.1:+4313666 MS.gene069902:CDS
AGAGGCAATAGCACAAATGA+AGG 0.541238 2.1:+4314426 MS.gene069902:CDS
TAAAATCATTGATAATTCCA+TGG 0.543371 2.1:+4314174 MS.gene069902:CDS
AAGAAACTTGAGGTAATTAG+CGG 0.544653 2.1:-4314662 None:intergenic
CTCTGGATCAGGCTCTTCAA+AGG 0.548876 2.1:-4314407 None:intergenic
ATGATAATGATTTCAATCAT+GGG 0.556089 2.1:-4314818 None:intergenic
AGATGGGATAATAAGTGTCC+TGG 0.557228 2.1:+4314328 MS.gene069902:CDS
AACCAGGAGCTAGAAACAGT+TGG 0.559225 2.1:+4313783 MS.gene069902:CDS
GTGTCCATCTTGGTTCCACC+AGG 0.564056 2.1:-4314619 None:intergenic
TAGTCTCTTGCAAAGTCTTG+TGG 0.568681 2.1:-4313698 None:intergenic
TGTTCCTGGTGGAACCAAGA+TGG 0.571863 2.1:+4314615 MS.gene069902:CDS
GTCAGTGTTACTGTTTGTAG+TGG 0.575193 2.1:-4313966 None:intergenic
TAGAGCACAAGTCAAAGCAC+TGG 0.576476 2.1:+4314684 MS.gene069902:CDS
GAAGGGAAAGAATAAGTGAG+AGG 0.579170 2.1:+4314572 MS.gene069902:CDS
TCCAAACCCAAATTCGTCAC+CGG 0.582453 2.1:-4314478 None:intergenic
ATCCACAAACTGTGGCGGCT+AGG 0.587768 2.1:+4314545 MS.gene069902:CDS
AATCGATGGGTTGAAGGAGA+AGG 0.590674 2.1:-4314761 None:intergenic
CAAAGTCAAAGAAACCAAGA+TGG 0.591227 2.1:+4314311 MS.gene069902:CDS
TAGAGCTGCAGCATTTAGGC+CGG 0.600006 2.1:+4314459 MS.gene069902:CDS
CGATATTGACTGAAAGTGAA+GGG 0.603630 2.1:-4313832 None:intergenic
AAAGTCAAAGAAACCAAGAT+GGG 0.607623 2.1:+4314312 MS.gene069902:CDS
TCGATATTGACTGAAAGTGA+AGG 0.610006 2.1:-4313833 None:intergenic
CTTTGAAGAGCCTGATCCAG+AGG 0.622335 2.1:+4314408 MS.gene069902:CDS
GCCATGTTGAAATCAGGCAG+TGG 0.628594 2.1:-4313875 None:intergenic
TTGCAGAAGATTGTTCCTGG+TGG 0.639639 2.1:+4314604 MS.gene069902:CDS
TGAGTAGTAATGCTGAAGCA+AGG 0.639766 2.1:-4314235 None:intergenic
TCAAATGCAAGAAATGCAGA+AGG 0.642036 2.1:+4313757 MS.gene069902:CDS
AAATTGATATTTGATGAACC+AGG 0.643576 2.1:-4314346 None:intergenic
ATCAAATGATCCACAAACTG+TGG 0.655439 2.1:+4314537 MS.gene069902:CDS
GAAATGCAGAAGGTTCAACC+AGG 0.659735 2.1:+4313767 MS.gene069902:CDS
GCGTACAAATGCTAGAAACA+AGG 0.662859 2.1:+4314087 MS.gene069902:CDS
AAATGATCCACAAACTGTGG+CGG 0.666151 2.1:+4314540 MS.gene069902:CDS
TGTGGCGGCTAGGCAAAGAA+GGG 0.669512 2.1:+4314555 MS.gene069902:CDS
GCCACTGCCTGATTTCAACA+TGG 0.684690 2.1:+4313874 MS.gene069902:CDS
AGTGGCACATAATTGTTAGG+TGG 0.699397 2.1:-4313857 None:intergenic
CTTGTGCTCTAAGAAACTTG+AGG 0.702293 2.1:-4314672 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATCATTGATAATTCCA+TGG + chr2.1:4314174-4314193 MS.gene069902:CDS 20.0%
! AAATTGATATTTGATGAACC+AGG - chr2.1:4314349-4314368 None:intergenic 25.0%
! AATATTGGATGTTGACATTA+GGG - chr2.1:4314798-4314817 None:intergenic 25.0%
! AGTTAAAAACACTTGAACTT+GGG - chr2.1:4313736-4313755 None:intergenic 25.0%
! TAGTTAAAAACACTTGAACT+TGG - chr2.1:4313737-4313756 None:intergenic 25.0%
!! ATCAATATTAGTCCTTTTTG+TGG - chr2.1:4314206-4314225 None:intergenic 25.0%
!! ATCTTAACATTCTTCCTTTT+AGG - chr2.1:4314517-4314536 None:intergenic 25.0%
AAAGAATAAGTGAGAGGATT+AGG + chr2.1:4314578-4314597 MS.gene069902:CDS 30.0%
AAAGTCAAAGAAACCAAGAT+GGG + chr2.1:4314312-4314331 MS.gene069902:CDS 30.0%
AAGAAACTTGAGGTAATTAG+CGG - chr2.1:4314665-4314684 None:intergenic 30.0%
AAGAATAAGTGAGAGGATTA+GGG + chr2.1:4314579-4314598 MS.gene069902:CDS 30.0%
ACTAATTCTGTTCAAGATGA+TGG + chr2.1:4313989-4314008 MS.gene069902:CDS 30.0%
ACTGCAAAAACAGAAACTTA+TGG + chr2.1:4314032-4314051 MS.gene069902:CDS 30.0%
GAATATTGGATGTTGACATT+AGG - chr2.1:4314799-4314818 None:intergenic 30.0%
GACAATGAAACTGATGAATT+TGG - chr2.1:4314379-4314398 None:intergenic 30.0%
TCTTCTTCTTCTACTGAATT+TGG + chr2.1:4314262-4314281 MS.gene069902:CDS 30.0%
TTTGCAGTCAGAAAAAATCA+TGG - chr2.1:4314020-4314039 None:intergenic 30.0%
! AATGATTTTACCTTGATCTG+AGG - chr2.1:4314164-4314183 None:intergenic 30.0%
AAAAACACTTGAACTTGGGT+TGG - chr2.1:4313732-4313751 None:intergenic 35.0%
AAACTGATGAATTTGGTTGC+TGG - chr2.1:4314372-4314391 None:intergenic 35.0%
AACTTTAGTGCAGTTTCTTC+TGG + chr2.1:4314055-4314074 MS.gene069902:CDS 35.0%
ATCAAATGATCCACAAACTG+TGG + chr2.1:4314537-4314556 MS.gene069902:CDS 35.0%
CAAAGTCAAAGAAACCAAGA+TGG + chr2.1:4314311-4314330 MS.gene069902:CDS 35.0%
TATATAGAGCTGCAGCATTT+AGG + chr2.1:4314455-4314474 MS.gene069902:CDS 35.0%
TCAAATGCAAGAAATGCAGA+AGG + chr2.1:4313757-4313776 MS.gene069902:CDS 35.0%
TTACCAACATACCAATCTTG+TGG + chr2.1:4313666-4313685 MS.gene069902:CDS 35.0%
! AAGTGATGGAAAAGCCTAAA+AGG + chr2.1:4314500-4314519 MS.gene069902:CDS 35.0%
! CATCTTGGTTTCTTTGACTT+TGG - chr2.1:4314313-4314332 None:intergenic 35.0%
! CGATATTGACTGAAAGTGAA+GGG - chr2.1:4313835-4313854 None:intergenic 35.0%
! TCGATATTGACTGAAAGTGA+AGG - chr2.1:4313836-4313855 None:intergenic 35.0%
! TTGACATTAGGGTTTTGCAT+GGG - chr2.1:4314787-4314806 None:intergenic 35.0%
AAATGATCCACAAACTGTGG+CGG + chr2.1:4314540-4314559 MS.gene069902:CDS 40.0%
AAGGAGAAGGCTATGTTTGT+AGG - chr2.1:4314751-4314770 None:intergenic 40.0%
AGAGGCAATAGCACAAATGA+AGG + chr2.1:4314426-4314445 MS.gene069902:CDS 40.0%
AGATGGGATAATAAGTGTCC+TGG + chr2.1:4314328-4314347 MS.gene069902:CDS 40.0%
AGTGGCACATAATTGTTAGG+TGG - chr2.1:4313860-4313879 None:intergenic 40.0%
CCATGGTTCATTCCACAAAA+AGG + chr2.1:4314191-4314210 MS.gene069902:CDS 40.0%
GAAGGGAAAGAATAAGTGAG+AGG + chr2.1:4314572-4314591 MS.gene069902:CDS 40.0%
GCGTACAAATGCTAGAAACA+AGG + chr2.1:4314087-4314106 MS.gene069902:CDS 40.0%
GGACACTTATTATCCCATCT+TGG - chr2.1:4314328-4314347 None:intergenic 40.0%
GTAGTAGTACTCTTGCTGAT+TGG - chr2.1:4313908-4313927 None:intergenic 40.0%
GTTCCACAAGATTGGTATGT+TGG - chr2.1:4313672-4313691 None:intergenic 40.0%
TAGTCTCTTGCAAAGTCTTG+TGG - chr2.1:4313701-4313720 None:intergenic 40.0%
TGAGTAGTAATGCTGAAGCA+AGG - chr2.1:4314238-4314257 None:intergenic 40.0%
! CCTTTTTGTGGAATGAACCA+TGG - chr2.1:4314194-4314213 None:intergenic 40.0%
! CTGAAAGTGAAGGGTATGAT+TGG - chr2.1:4313826-4313845 None:intergenic 40.0%
! CTTGGTTTCTTTGACTTTGG+TGG - chr2.1:4314310-4314329 None:intergenic 40.0%
! GAATTTGGGTTTGGAAGTGA+TGG + chr2.1:4314486-4314505 MS.gene069902:CDS 40.0%
! GTCAGTGTTACTGTTTGTAG+TGG - chr2.1:4313969-4313988 None:intergenic 40.0%
! GTTGACATTAGGGTTTTGCA+TGG - chr2.1:4314788-4314807 None:intergenic 40.0%
! TAGTACTCTTGCTGATTGGT+TGG - chr2.1:4313904-4313923 None:intergenic 40.0%
! TTCATTTGTGCTATTGCCTC+TGG - chr2.1:4314427-4314446 None:intergenic 40.0%
!! CTTGTGCTCTAAGAAACTTG+AGG - chr2.1:4314675-4314694 None:intergenic 40.0%
AACCAGGAGCTAGAAACAGT+TGG + chr2.1:4313783-4313802 MS.gene069902:CDS 45.0%
ACCAGGAGCTAGAAACAGTT+GGG + chr2.1:4313784-4313803 MS.gene069902:CDS 45.0%
ATTTAGGCCGGTGACGAATT+TGG + chr2.1:4314471-4314490 MS.gene069902:CDS 45.0%
CATTGATGCAGTGTCCATCT+TGG - chr2.1:4314632-4314651 None:intergenic 45.0%
GAAATGCAGAAGGTTCAACC+AGG + chr2.1:4313767-4313786 MS.gene069902:CDS 45.0%
GGCAGTGGCACATAATTGTT+AGG - chr2.1:4313863-4313882 None:intergenic 45.0%
GGTTGAGTGTTCCACAAGAT+TGG - chr2.1:4313680-4313699 None:intergenic 45.0%
GTCTTGCAGAAGATTGTTCC+TGG + chr2.1:4314601-4314620 MS.gene069902:CDS 45.0%
TAGAGCACAAGTCAAAGCAC+TGG + chr2.1:4314684-4314703 MS.gene069902:CDS 45.0%
TCCAAACCCAAATTCGTCAC+CGG - chr2.1:4314481-4314500 None:intergenic 45.0%
TGCATTCAAGGAACTGGATC+AGG + chr2.1:4314120-4314139 MS.gene069902:CDS 45.0%
TGCTAGAAACAAGGACATGC+AGG + chr2.1:4314096-4314115 MS.gene069902:CDS 45.0%
TTACCTTGATCTGAGGAAGC+TGG - chr2.1:4314157-4314176 None:intergenic 45.0%
TTGCAGAAGATTGTTCCTGG+TGG + chr2.1:4314604-4314623 MS.gene069902:CDS 45.0%
TTTAGGCCGGTGACGAATTT+GGG + chr2.1:4314472-4314491 MS.gene069902:CDS 45.0%
! ACTCTTGCTGATTGGTTGGT+GGG - chr2.1:4313900-4313919 None:intergenic 45.0%
! GGTTTTGCATGGGAATCGAT+GGG - chr2.1:4314777-4314796 None:intergenic 45.0%
! TACTCTTGCTGATTGGTTGG+TGG - chr2.1:4313901-4313920 None:intergenic 45.0%
!! AATCGATGGGTTGAAGGAGA+AGG - chr2.1:4314764-4314783 None:intergenic 45.0%
!! GTCAAAGCACTGGAGAATCT+AGG + chr2.1:4314694-4314713 MS.gene069902:CDS 45.0%
CTCTGGATCAGGCTCTTCAA+AGG - chr2.1:4314410-4314429 None:intergenic 50.0%
GCAGGATGCATTCAAGGAAC+TGG + chr2.1:4314114-4314133 MS.gene069902:CDS 50.0%
GCCACTGCCTGATTTCAACA+TGG + chr2.1:4313874-4313893 MS.gene069902:CDS 50.0%
GCCATGTTGAAATCAGGCAG+TGG - chr2.1:4313878-4313897 None:intergenic 50.0%
GGACATGCAGGATGCATTCA+AGG + chr2.1:4314108-4314127 MS.gene069902:CDS 50.0%
TAGAGCTGCAGCATTTAGGC+CGG + chr2.1:4314459-4314478 MS.gene069902:CDS 50.0%
TCTCCAGCTTCCTCAGATCA+AGG + chr2.1:4314151-4314170 MS.gene069902:CDS 50.0%
TGTTCCTGGTGGAACCAAGA+TGG + chr2.1:4314615-4314634 MS.gene069902:CDS 50.0%
! CTTTGAAGAGCCTGATCCAG+AGG + chr2.1:4314408-4314427 MS.gene069902:CDS 50.0%
! GGGTTTTGCATGGGAATCGA+TGG - chr2.1:4314778-4314797 None:intergenic 50.0%
! TGGTGGGCCATGTTGAAATC+AGG - chr2.1:4313884-4313903 None:intergenic 50.0%
! TGTGCTATTGCCTCTGGATC+AGG - chr2.1:4314421-4314440 None:intergenic 50.0%
!! CATGGGAATCGATGGGTTGA+AGG - chr2.1:4314770-4314789 None:intergenic 50.0%
!! TCCCAACTGTTTCTAGCTCC+TGG - chr2.1:4313788-4313807 None:intergenic 50.0%
ATCCACAAACTGTGGCGGCT+AGG + chr2.1:4314545-4314564 MS.gene069902:CDS 55.0%
GTGTCCATCTTGGTTCCACC+AGG - chr2.1:4314622-4314641 None:intergenic 55.0%
TGTGGCGGCTAGGCAAAGAA+GGG + chr2.1:4314555-4314574 MS.gene069902:CDS 55.0%
! GCCGGTGACGAATTTGGGTT+TGG + chr2.1:4314477-4314496 MS.gene069902:CDS 55.0%
CTGTGGCGGCTAGGCAAAGA+AGG + chr2.1:4314554-4314573 MS.gene069902:CDS 60.0%
TGCCTAGCCGCCACAGTTTG+TGG - chr2.1:4314550-4314569 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 4313629 4314828 4313629 ID=MS.gene069902
chr2.1 mRNA 4313629 4314828 4313629 ID=MS.gene069902.t1;Parent=MS.gene069902
chr2.1 exon 4313629 4314828 4313629 ID=MS.gene069902.t1.exon1;Parent=MS.gene069902.t1
chr2.1 CDS 4313629 4314828 4313629 ID=cds.MS.gene069902.t1;Parent=MS.gene069902.t1
Gene Sequence

>MS.gene069902

ATGGATTGTCTTAGCTGGGATGATGATACACAACTTGTTACCAACATACCAATCTTGTGGAACACTCAACCACAAGACTTTGCAAGAGACTATTCAATGTCCAACCCAAGTTCAAGTGTTTTTAACTATCAAATGCAAGAAATGCAGAAGGTTCAACCAGGAGCTAGAAACAGTTGGGAAGAAACTTTAATATTCCAATCATACCCTTCACTTTCAGTCAATATCGATCCACCTAACAATTATGTGCCACTGCCTGATTTCAACATGGCCCACCAACCAATCAGCAAGAGTACTACTACATGCTCACTTGAATCATCACTTGATTGTTTGCTTTCAGCCACTACAAACAGTAACACTGACACTAATTCTGTTCAAGATGATGGAATTTCCATGATTTTTTCTGACTGCAAAAACAGAAACTTATGGAACTTTAGTGCAGTTTCTTCTGGTGAATCAGAGCGTACAAATGCTAGAAACAAGGACATGCAGGATGCATTCAAGGAACTGGATCAGGAAATAGTATCTCCAGCTTCCTCAGATCAAGGTAAAATCATTGATAATTCCATGGTTCATTCCACAAAAAGGACTAATATTGATCAATATGATCCTTGCTTCAGCATTACTACTCAGAATTCTTCTTCTTCTACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCAAAGTCAAAGAAACCAAGATGGGATAATAAGTGTCCTGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCAGTTTCATTGTCAAATTCATCCTTTGAAGAGCCTGATCCAGAGGCAATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCATTTAGGCCGGTGACGAATTTGGGTTTGGAAGTGATGGAAAAGCCTAAAAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCGGCTAGGCAAAGAAGGGAAAGAATAAGTGAGAGGATTAGGGTCTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCCGCTAATTACCTCAAGTTTCTTAGAGCACAAGTCAAAGCACTGGAGAATCTAGGAAACAAGATTGATACAATGAATAATTGTTCTCCTACAAACATAGCCTTCTCCTTCAACCCATCGATTCCCATGCAAAACCCTAATGTCAACATCCAATATTCCCATGATTGA
Protein sequence

>MS.gene069902.t1

MDCLSWDDDTQLVTNIPILWNTQPQDFARDYSMSNPSSSVFNYQMQEMQKVQPGARNSWEETLIFQSYPSLSVNIDPPNNYVPLPDFNMAHQPISKSTTTCSLESSLDCLLSATTNSNTDTNSVQDDGISMIFSDCKNRNLWNFSAVSSGESERTNARNKDMQDAFKELDQEIVSPASSDQGKIIDNSMVHSTKRTNIDQYDPCFSITTQNSSSSTEFGFKLISEKPPKSKKPRWDNKCPGSSNINFQQPNSSVSLSNSSFEEPDPEAIAQMKEMIYRAAAFRPVTNLGLEVMEKPKRKNVKISNDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRAQVKALENLGNKIDTMNNCSPTNIAFSFNPSIPMQNPNVNIQYSHD