Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069961.t1 | XP_024632961.1 | 90 | 608 | 38 | 2 | 1 | 585 | 1 | 608 | 0.00E+00 | 1088.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069961.t1 | Q9SZL8 | 26.7 | 472 | 315 | 9 | 35 | 500 | 72 | 518 | 3.0e-49 | 198.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069961.t1 | D3YBB9 | 79.1 | 592 | 111 | 3 | 1 | 585 | 52 | 637 | 1.1e-267 | 931.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene069961.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069961.t1 | MTR_0558s0020 | 93.581 | 296 | 19 | 0 | 1 | 296 | 1 | 296 | 0.0 | 586 |
| MS.gene069961.t1 | MTR_1g083640 | 89.510 | 286 | 15 | 1 | 1 | 271 | 1 | 286 | 0.0 | 533 |
| MS.gene069961.t1 | MTR_8g446020 | 80.068 | 296 | 19 | 2 | 1 | 296 | 1 | 256 | 1.98e-166 | 474 |
| MS.gene069961.t1 | MTR_6g090505 | 89.873 | 237 | 24 | 0 | 66 | 302 | 1 | 237 | 1.52e-154 | 447 |
| MS.gene069961.t1 | MTR_6g090505 | 66.055 | 109 | 14 | 2 | 388 | 496 | 221 | 306 | 1.29e-35 | 137 |
| MS.gene069961.t1 | MTR_2g014100 | 87.755 | 245 | 22 | 1 | 1 | 237 | 1 | 245 | 2.75e-154 | 442 |
| MS.gene069961.t1 | MTR_0337s0040 | 78.462 | 260 | 17 | 1 | 1 | 260 | 1 | 221 | 7.38e-141 | 407 |
| MS.gene069961.t1 | MTR_3g008240 | 91.133 | 203 | 18 | 0 | 1 | 203 | 1 | 203 | 1.70e-132 | 385 |
| MS.gene069961.t1 | MTR_4g040430 | 91.133 | 203 | 13 | 2 | 1 | 203 | 1 | 198 | 9.75e-130 | 378 |
| MS.gene069961.t1 | MTR_5g071590 | 85.083 | 181 | 15 | 1 | 1 | 169 | 1 | 181 | 8.72e-108 | 322 |
| MS.gene069961.t1 | MTR_0019s0290 | 87.500 | 152 | 19 | 0 | 83 | 234 | 9 | 160 | 1.45e-95 | 289 |
| MS.gene069961.t1 | MTR_1g055240 | 92.308 | 143 | 11 | 0 | 91 | 233 | 2 | 144 | 2.17e-93 | 283 |
| MS.gene069961.t1 | MTR_1281s0010 | 94.495 | 109 | 6 | 0 | 20 | 128 | 1 | 109 | 3.84e-69 | 219 |
| MS.gene069961.t1 | MTR_0337s0060 | 79.528 | 127 | 21 | 1 | 426 | 552 | 4 | 125 | 2.80e-62 | 206 |
| MS.gene069961.t1 | MTR_4g008820 | 91.250 | 80 | 7 | 0 | 1 | 80 | 125 | 204 | 1.78e-38 | 150 |
| MS.gene069961.t1 | MTR_8g046060 | 85.227 | 88 | 5 | 2 | 1 | 80 | 91 | 178 | 2.04e-37 | 138 |
| MS.gene069961.t1 | MTR_6g051425 | 30.650 | 323 | 183 | 6 | 41 | 342 | 22 | 324 | 2.29e-37 | 142 |
| MS.gene069961.t1 | MTR_1g070355 | 25.341 | 367 | 249 | 8 | 2 | 363 | 38 | 384 | 5.02e-20 | 94.4 |
| MS.gene069961.t1 | MTR_0337s0050 | 83.333 | 36 | 6 | 0 | 260 | 295 | 14 | 49 | 5.28e-14 | 67.8 |
| MS.gene069961.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 50 | 234 | 40 | 205 | 8.91e-14 | 74.3 |
| MS.gene069961.t1 | MTR_1g013060 | 28.837 | 215 | 136 | 6 | 41 | 254 | 29 | 227 | 1.81e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069961.t1 | AT4G38180 | 27.044 | 477 | 307 | 11 | 35 | 500 | 72 | 518 | 3.83e-53 | 194 |
| MS.gene069961.t1 | AT3G06250 | 24.686 | 478 | 290 | 9 | 24 | 499 | 178 | 587 | 8.29e-38 | 149 |
| MS.gene069961.t1 | AT3G06250 | 24.686 | 478 | 290 | 9 | 24 | 499 | 178 | 587 | 8.29e-38 | 149 |
| MS.gene069961.t1 | AT3G06250 | 24.686 | 478 | 290 | 9 | 24 | 499 | 178 | 587 | 8.29e-38 | 149 |
| MS.gene069961.t1 | AT4G15090 | 25.778 | 450 | 303 | 9 | 51 | 495 | 66 | 489 | 2.14e-35 | 142 |
| MS.gene069961.t1 | AT4G15090 | 25.778 | 450 | 303 | 9 | 51 | 495 | 66 | 489 | 2.14e-35 | 142 |
| MS.gene069961.t1 | AT4G15090 | 25.778 | 450 | 303 | 9 | 51 | 495 | 66 | 489 | 2.14e-35 | 142 |
| MS.gene069961.t1 | AT4G15090 | 25.778 | 450 | 303 | 9 | 51 | 495 | 66 | 489 | 2.14e-35 | 142 |
| MS.gene069961.t1 | AT4G15090 | 25.778 | 450 | 303 | 9 | 51 | 495 | 66 | 489 | 2.14e-35 | 142 |
| MS.gene069961.t1 | AT1G76320 | 24.632 | 475 | 316 | 11 | 40 | 508 | 1 | 439 | 5.53e-35 | 140 |
| MS.gene069961.t1 | AT1G76320 | 24.632 | 475 | 316 | 11 | 40 | 508 | 1 | 439 | 1.17e-34 | 140 |
| MS.gene069961.t1 | AT1G76320 | 24.632 | 475 | 316 | 11 | 40 | 508 | 1 | 439 | 1.17e-34 | 140 |
| MS.gene069961.t1 | AT1G76320 | 24.632 | 475 | 316 | 11 | 40 | 508 | 1 | 439 | 1.29e-34 | 139 |
| MS.gene069961.t1 | AT5G18960 | 24.638 | 483 | 291 | 13 | 22 | 499 | 197 | 611 | 4.82e-33 | 135 |
| MS.gene069961.t1 | AT5G18960 | 24.638 | 483 | 291 | 13 | 22 | 499 | 197 | 611 | 4.82e-33 | 135 |
| MS.gene069961.t1 | AT4G38170 | 25.574 | 305 | 215 | 5 | 223 | 524 | 11 | 306 | 8.91e-33 | 132 |
| MS.gene069961.t1 | AT3G22170 | 23.387 | 496 | 340 | 12 | 33 | 524 | 67 | 526 | 8.49e-32 | 131 |
| MS.gene069961.t1 | AT3G22170 | 23.387 | 496 | 340 | 12 | 33 | 524 | 67 | 526 | 8.49e-32 | 131 |
| MS.gene069961.t1 | AT1G10240 | 23.742 | 497 | 344 | 14 | 50 | 537 | 62 | 532 | 4.58e-31 | 129 |
| MS.gene069961.t1 | AT1G10240 | 23.742 | 497 | 344 | 14 | 50 | 537 | 62 | 532 | 4.58e-31 | 129 |
| MS.gene069961.t1 | AT5G28530 | 25.000 | 444 | 283 | 12 | 41 | 463 | 60 | 474 | 4.99e-31 | 129 |
| MS.gene069961.t1 | AT5G28530 | 25.000 | 444 | 283 | 12 | 41 | 463 | 60 | 474 | 4.99e-31 | 129 |
| MS.gene069961.t1 | AT5G28530 | 25.000 | 444 | 283 | 12 | 41 | 463 | 60 | 474 | 5.35e-31 | 128 |
| MS.gene069961.t1 | AT2G27110 | 26.298 | 289 | 205 | 3 | 214 | 500 | 36 | 318 | 3.68e-30 | 126 |
| MS.gene069961.t1 | AT2G27110 | 26.298 | 289 | 205 | 3 | 214 | 500 | 181 | 463 | 3.72e-30 | 126 |
| MS.gene069961.t1 | AT2G27110 | 26.298 | 289 | 205 | 3 | 214 | 500 | 181 | 463 | 3.72e-30 | 126 |
| MS.gene069961.t1 | AT1G80010 | 25.780 | 481 | 300 | 18 | 42 | 503 | 101 | 543 | 1.03e-28 | 122 |
| MS.gene069961.t1 | AT2G32250 | 23.293 | 498 | 306 | 12 | 4 | 496 | 8 | 434 | 9.40e-27 | 115 |
| MS.gene069961.t1 | AT2G32250 | 23.293 | 498 | 306 | 12 | 4 | 496 | 8 | 434 | 1.15e-26 | 115 |
| MS.gene069961.t1 | AT2G32250 | 23.293 | 498 | 306 | 12 | 4 | 496 | 8 | 434 | 1.15e-26 | 115 |
| MS.gene069961.t1 | AT2G32250 | 23.293 | 498 | 306 | 12 | 4 | 496 | 8 | 434 | 1.15e-26 | 115 |
| MS.gene069961.t1 | AT2G32250 | 23.293 | 498 | 306 | 12 | 4 | 496 | 8 | 434 | 1.22e-26 | 115 |
| MS.gene069961.t1 | AT2G32250 | 23.293 | 498 | 306 | 12 | 4 | 496 | 8 | 434 | 1.22e-26 | 115 |
| MS.gene069961.t1 | AT2G32250 | 23.696 | 460 | 277 | 11 | 42 | 496 | 3 | 393 | 2.88e-26 | 114 |
| MS.gene069961.t1 | AT2G32250 | 23.696 | 460 | 277 | 11 | 42 | 496 | 3 | 393 | 3.11e-26 | 114 |
| MS.gene069961.t1 | AT1G52520 | 22.820 | 539 | 357 | 16 | 39 | 558 | 88 | 586 | 3.73e-26 | 114 |
| MS.gene069961.t1 | AT4G19990 | 22.870 | 446 | 295 | 10 | 42 | 484 | 41 | 440 | 1.70e-24 | 108 |
| MS.gene069961.t1 | AT4G19990 | 22.870 | 446 | 295 | 10 | 42 | 484 | 27 | 426 | 1.73e-24 | 108 |
| MS.gene069961.t1 | AT4G19990 | 22.870 | 446 | 295 | 10 | 42 | 484 | 27 | 426 | 1.89e-24 | 108 |
| MS.gene069961.t1 | AT4G19990 | 22.870 | 446 | 295 | 10 | 42 | 484 | 27 | 426 | 1.89e-24 | 108 |
| MS.gene069961.t1 | AT4G19990 | 22.870 | 446 | 295 | 10 | 42 | 484 | 27 | 426 | 2.13e-24 | 108 |
| MS.gene069961.t1 | AT4G19990 | 22.870 | 446 | 295 | 10 | 42 | 484 | 27 | 426 | 2.13e-24 | 108 |
| MS.gene069961.t1 | AT4G19990 | 26.866 | 268 | 189 | 4 | 220 | 484 | 106 | 369 | 6.46e-24 | 107 |
Find 79 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTACGAGTTAACTAATT+TGG | 0.172886 | 3.2:+6716193 | MS.gene069961:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3.2:+6716460 | MS.gene069961:CDS |
| TATCGTCTGTGGTTTCTTAT+TGG | 0.203510 | 3.2:-6716039 | None:intergenic |
| TACATTTCAGCTGCCTTTAT+TGG | 0.203801 | 3.2:+6715912 | MS.gene069961:intron |
| GCATAAGATTTCCGTAAGTT+TGG | 0.288708 | 3.2:-6716316 | None:intergenic |
| GCCTTCCAATGTTGATGTTT+TGG | 0.297192 | 3.2:+6716757 | MS.gene069961:CDS |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 3.2:+6716234 | MS.gene069961:CDS |
| ACAAAATAAGAAATCAAATA+AGG | 0.334199 | 3.2:+6714649 | MS.gene069961:CDS |
| TCTGACGTTGGCCTGTTGTT+AGG | 0.351359 | 3.2:-6714731 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.364908 | 3.2:-6715925 | None:intergenic |
| GAAGGCCTACTTCAGACTTT+AGG | 0.375686 | 3.2:+6716285 | MS.gene069961:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.376102 | 3.2:+6716334 | MS.gene069961:CDS |
| TTCCATGATTCTTTATTACT+AGG | 0.389886 | 3.2:-6714521 | None:intergenic |
| GCCGATATTGATTGTTTGTT+CGG | 0.392943 | 3.2:-6715288 | None:intergenic |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 3.2:+6714997 | MS.gene069961:CDS |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3.2:+6716634 | MS.gene069961:CDS |
| TCATGCTGAGTTGGACTTCA+AGG | 0.402098 | 3.2:+6716502 | MS.gene069961:CDS |
| TTATGCATTGGTCTTCAGCT+TGG | 0.417102 | 3.2:+6716333 | MS.gene069961:CDS |
| ATGTCTATAAGATATATAGA+TGG | 0.423693 | 3.2:+6714852 | MS.gene069961:CDS |
| AGGTGGCTTGTCCAAACTTA+CGG | 0.423981 | 3.2:+6716305 | MS.gene069961:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 3.2:+6715010 | MS.gene069961:CDS |
| AACAATCAATATCGGCCATT+AGG | 0.428800 | 3.2:+6715295 | MS.gene069961:CDS |
| TCCATGATTCTTTATTACTA+GGG | 0.436638 | 3.2:-6714520 | None:intergenic |
| ACCGAACAAACAATCAATAT+CGG | 0.440661 | 3.2:+6715287 | MS.gene069961:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3.2:+6714800 | MS.gene069961:CDS |
| CGTCAAAAGGAGATGGTGAT+TGG | 0.447532 | 3.2:+6715091 | MS.gene069961:CDS |
| CGAAAAGTAAATGAAGTTCA+AGG | 0.448756 | 3.2:+6714935 | MS.gene069961:CDS |
| AACCGCATCAGTTGACTGTT+GGG | 0.451336 | 3.2:-6716554 | None:intergenic |
| ATATTGATTGTTTGTTCGGT+AGG | 0.460801 | 3.2:-6715284 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 3.2:+6714998 | MS.gene069961:CDS |
| GTCTGCTTAATCCTAACAAC+AGG | 0.466827 | 3.2:+6714720 | MS.gene069961:CDS |
| TCTAATGACGATTCGTCAAA+AGG | 0.472809 | 3.2:+6715078 | MS.gene069961:CDS |
| CTTGCTTTGCATTTATTCAC+AGG | 0.480587 | 3.2:+6716600 | MS.gene069961:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 3.2:-6715049 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3.2:-6716636 | None:intergenic |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3.2:+6716650 | MS.gene069961:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 3.2:+6716235 | MS.gene069961:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3.2:+6716474 | MS.gene069961:CDS |
| CTCAGGTAACACAAATGCTC+TGG | 0.496027 | 3.2:-6714905 | None:intergenic |
| CCCCTAGTAATAAAGAATCA+TGG | 0.497629 | 3.2:+6714519 | MS.gene069961:CDS |
| TGTCTTCTGCAACATCAACT+TGG | 0.500580 | 3.2:-6715183 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 3.2:-6714794 | None:intergenic |
| CGTTATGTTTGTAACAAACA+AGG | 0.507173 | 3.2:+6714683 | MS.gene069961:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3.2:+6716493 | MS.gene069961:CDS |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 3.2:+6714694 | MS.gene069961:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.514358 | 3.2:-6714893 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 3.2:-6716442 | None:intergenic |
| GAACCGCATCAGTTGACTGT+TGG | 0.521951 | 3.2:-6716555 | None:intergenic |
| CTTACGGAAATCTTATGCAT+TGG | 0.523146 | 3.2:+6716321 | MS.gene069961:CDS |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 3.2:+6714587 | MS.gene069961:CDS |
| TGTCTATAAGATATATAGAT+GGG | 0.523615 | 3.2:+6714853 | MS.gene069961:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3.2:-6716631 | None:intergenic |
| TTCACAAACTCAATAACCAC+TGG | 0.531770 | 3.2:-6714758 | None:intergenic |
| AATTCAACAACGCACTAGCC+TGG | 0.534735 | 3.2:-6716070 | None:intergenic |
| GGCCTACTTCAGACTTTAGG+TGG | 0.536366 | 3.2:+6716288 | MS.gene069961:CDS |
| TGGGCTTTGCTCATGGCACA+TGG | 0.540761 | 3.2:+6716124 | MS.gene069961:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3.2:-6716437 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3.2:+6716651 | MS.gene069961:CDS |
| TGCATCCAAAACATCAACAT+TGG | 0.544202 | 3.2:-6716762 | None:intergenic |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 3.2:+6714695 | MS.gene069961:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.567659 | 3.2:+6714859 | MS.gene069961:CDS |
| GACGATTCGTCAAAAGGAGA+TGG | 0.569114 | 3.2:+6715084 | MS.gene069961:CDS |
| TCCAAAACATCAACATTGGA+AGG | 0.569301 | 3.2:-6716758 | None:intergenic |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 3.2:+6715013 | MS.gene069961:CDS |
| CCATGATTCTTTATTACTAG+GGG | 0.580036 | 3.2:-6714519 | None:intergenic |
| TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 3.2:+6715004 | MS.gene069961:CDS |
| TGAATAAATGCAAAGCAAGC+TGG | 0.591761 | 3.2:-6716596 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3.2:+6716637 | MS.gene069961:CDS |
| GATGCTGATAATGATAATGA+CGG | 0.621240 | 3.2:+6716734 | MS.gene069961:CDS |
| AGCCACCTAAAGTCTGAAGT+AGG | 0.626906 | 3.2:-6716290 | None:intergenic |
| ACCACTGGACTGTCTGACGT+TGG | 0.633462 | 3.2:-6714743 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.637387 | 3.2:+6715018 | MS.gene069961:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3.2:+6716475 | MS.gene069961:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.645542 | 3.2:+6714440 | MS.gene069961:CDS |
| ATGCTGATAATGATAATGAC+GGG | 0.647195 | 3.2:+6716735 | MS.gene069961:CDS |
| TGGTCTGTATATATCGTCTG+TGG | 0.648431 | 3.2:-6716050 | None:intergenic |
| ATCCCAACAGTCAACTGATG+CGG | 0.661071 | 3.2:+6716552 | MS.gene069961:CDS |
| ACAGACGATATATACAGACC+AGG | 0.696353 | 3.2:+6716052 | MS.gene069961:CDS |
| GCCAACGTCAGACAGTCCAG+TGG | 0.727445 | 3.2:+6714742 | MS.gene069961:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATGTAAGTTATATAT+AGG | + | chr3.2:6715862-6715881 | MS.gene069961:intron | 10.0% |
| !! | ACAAAATAAGAAATCAAATA+AGG | + | chr3.2:6714649-6714668 | MS.gene069961:CDS | 15.0% |
| !!! | ATGATGAAAAATTGTTTTAA+TGG | + | chr3.2:6716263-6716282 | MS.gene069961:CDS | 15.0% |
| !! | ATGTCTATAAGATATATAGA+TGG | + | chr3.2:6714852-6714871 | MS.gene069961:CDS | 20.0% |
| !! | TGTCTATAAGATATATAGAT+GGG | + | chr3.2:6714853-6714872 | MS.gene069961:CDS | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr3.2:6714566-6714585 | MS.gene069961:CDS | 20.0% |
| !!! | TCAATTCAGAATATTTTTCT+AGG | + | chr3.2:6716092-6716111 | MS.gene069961:CDS | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | + | chr3.2:6716267-6716286 | MS.gene069961:CDS | 20.0% |
| ! | ACATAAATGCATTCTAATTG+AGG | + | chr3.2:6715804-6715823 | MS.gene069961:intron | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr3.2:6715313-6715332 | None:intergenic | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr3.2:6715928-6715947 | None:intergenic | 25.0% |
| ! | ATTTATGTTTAAGAGATCAG+TGG | + | chr3.2:6715504-6715523 | MS.gene069961:intron | 25.0% |
| ! | CATAAATGCATTCTAATTGA+GGG | + | chr3.2:6715805-6715824 | MS.gene069961:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr3.2:6716634-6716653 | None:intergenic | 25.0% |
| ! | CTCTTAAACATAAATGCATT+TGG | - | chr3.2:6715499-6715518 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr3.2:6716460-6716479 | MS.gene069961:CDS | 25.0% |
| ! | TCCATGATTCTTTATTACTA+GGG | - | chr3.2:6714523-6714542 | None:intergenic | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | - | chr3.2:6715166-6715185 | None:intergenic | 25.0% |
| ! | TTCCATGATTCTTTATTACT+AGG | - | chr3.2:6714524-6714543 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr3.2:6716634-6716653 | MS.gene069961:CDS | 25.0% |
| ! | TTTATGTTTAAGAGATCAGT+GGG | + | chr3.2:6715505-6715524 | MS.gene069961:intron | 25.0% |
| ! | TTTCTACGAGTTAACTAATT+TGG | + | chr3.2:6716193-6716212 | MS.gene069961:CDS | 25.0% |
| !! | AACTTTGAAAAACTTGTTCA+AGG | - | chr3.2:6716681-6716700 | None:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr3.2:6714600-6714619 | MS.gene069961:CDS | 25.0% |
| !! | ATTTTTCTAGGTGTTTTTCA+TGG | + | chr3.2:6716104-6716123 | MS.gene069961:CDS | 25.0% |
| !! | CATTATGTTGTATTTTGTTC+TGG | + | chr3.2:6715363-6715382 | MS.gene069961:intron | 25.0% |
| !! | GTTGTATTTTGTTCTGATTT+GGG | + | chr3.2:6715884-6715903 | MS.gene069961:intron | 25.0% |
| !! | TAGTATTTTGTACTTCTCTT+AGG | + | chr3.2:6715319-6715338 | MS.gene069961:intron | 25.0% |
| !! | TTTTTCTAGGTGTTTTTCAT+GGG | + | chr3.2:6716105-6716124 | MS.gene069961:CDS | 25.0% |
| !!! | GCTGTAATAAATTTTAAAGC+TGG | + | chr3.2:6714965-6714984 | MS.gene069961:CDS | 25.0% |
| AACAAACAAGGTTTCAAGAA+GGG | + | chr3.2:6714695-6714714 | MS.gene069961:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr3.2:6716234-6716253 | MS.gene069961:CDS | 30.0% | |
| ACCGAACAAACAATCAATAT+CGG | + | chr3.2:6715287-6715306 | MS.gene069961:CDS | 30.0% | |
| AGAACGTCTTATGAAGTTAT+GGG | + | chr3.2:6714998-6715017 | MS.gene069961:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr3.2:6716235-6716254 | MS.gene069961:CDS | 30.0% | |
| CCATGATTCTTTATTACTAG+GGG | - | chr3.2:6714522-6714541 | None:intergenic | 30.0% | |
| CGAAAAGTAAATGAAGTTCA+AGG | + | chr3.2:6714935-6714954 | MS.gene069961:CDS | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | + | chr3.2:6714683-6714702 | MS.gene069961:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr3.2:6716639-6716658 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr3.2:6716637-6716656 | MS.gene069961:CDS | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr3.2:6716149-6716168 | MS.gene069961:CDS | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr3.2:6714587-6714606 | MS.gene069961:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr3.2:6716445-6716464 | None:intergenic | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | + | chr3.2:6714694-6714713 | MS.gene069961:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr3.2:6714859-6714878 | MS.gene069961:CDS | 30.0% | |
| TGTAAGATTGATAAAGTTGC+AGG | + | chr3.2:6715537-6715556 | MS.gene069961:intron | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | chr3.2:6715052-6715071 | None:intergenic | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr3.2:6714896-6714915 | None:intergenic | 30.0% |
| ! | ATATTGATTGTTTGTTCGGT+AGG | - | chr3.2:6715287-6715306 | None:intergenic | 30.0% |
| ! | ATGCTGATAATGATAATGAC+GGG | + | chr3.2:6716735-6716754 | MS.gene069961:CDS | 30.0% |
| ! | GATGCTGATAATGATAATGA+CGG | + | chr3.2:6716734-6716753 | MS.gene069961:CDS | 30.0% |
| ! | GGTTGTATTTTGTTCTGATT+TGG | + | chr3.2:6715883-6715902 | MS.gene069961:intron | 30.0% |
| ! | GTTAAGTTACATTTTACAGC+TGG | + | chr3.2:6716356-6716375 | MS.gene069961:CDS | 30.0% |
| !! | AAAGAGCATTCTTATGATCA+AGG | - | chr3.2:6715581-6715600 | None:intergenic | 30.0% |
| !! | TTACTTTTCGAAATGATCTC+AGG | - | chr3.2:6714925-6714944 | None:intergenic | 30.0% |
| !!! | AAGACATAGCTAGCATTTTT+TGG | + | chr3.2:6715200-6715219 | MS.gene069961:CDS | 30.0% |
| !!! | AGACATAGCTAGCATTTTTT+GGG | + | chr3.2:6715201-6715220 | MS.gene069961:CDS | 30.0% |
| !!! | CATCGTAAGAGTGTTTTATT+TGG | + | chr3.2:6715945-6715964 | MS.gene069961:CDS | 30.0% |
| AACAATCAATATCGGCCATT+AGG | + | chr3.2:6715295-6715314 | MS.gene069961:CDS | 35.0% | |
| AATGCATTCTAATTGAGGGT+TGG | + | chr3.2:6715809-6715828 | MS.gene069961:intron | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr3.2:6716474-6716493 | MS.gene069961:CDS | 35.0% | |
| ATATCAACTTCATCTGAGAG+TGG | + | chr3.2:6714440-6714459 | MS.gene069961:CDS | 35.0% | |
| CAAGATGTATCCTTGCTTAA+TGG | - | chr3.2:6715613-6715632 | None:intergenic | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr3.2:6716475-6716494 | MS.gene069961:CDS | 35.0% | |
| CCCCTAGTAATAAAGAATCA+TGG | + | chr3.2:6714519-6714538 | MS.gene069961:CDS | 35.0% | |
| CTTACGGAAATCTTATGCAT+TGG | + | chr3.2:6716321-6716340 | MS.gene069961:CDS | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | chr3.2:6716600-6716619 | MS.gene069961:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr3.2:6714784-6714803 | MS.gene069961:CDS | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr3.2:6714778-6714797 | MS.gene069961:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | chr3.2:6714997-6715016 | MS.gene069961:CDS | 35.0% | |
| GATCTCTTAAACTACAGACT+CGG | - | chr3.2:6715455-6715474 | None:intergenic | 35.0% | |
| GCATAAGATTTCCGTAAGTT+TGG | - | chr3.2:6716319-6716338 | None:intergenic | 35.0% | |
| GGATACATCTTGTATTGAAC+AGG | + | chr3.2:6715621-6715640 | MS.gene069961:intron | 35.0% | |
| TACATTTCAGCTGCCTTTAT+TGG | + | chr3.2:6715912-6715931 | MS.gene069961:intron | 35.0% | |
| TACTTAGCAACCATTAAGCA+AGG | + | chr3.2:6715600-6715619 | MS.gene069961:intron | 35.0% | |
| TATCGTCTGTGGTTTCTTAT+TGG | - | chr3.2:6716042-6716061 | None:intergenic | 35.0% | |
| TCCAAAACATCAACATTGGA+AGG | - | chr3.2:6716761-6716780 | None:intergenic | 35.0% | |
| TCTAATGACGATTCGTCAAA+AGG | + | chr3.2:6715078-6715097 | MS.gene069961:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | + | chr3.2:6715004-6715023 | MS.gene069961:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr3.2:6714783-6714802 | MS.gene069961:CDS | 35.0% | |
| TGAATAAATGCAAAGCAAGC+TGG | - | chr3.2:6716599-6716618 | None:intergenic | 35.0% | |
| TGCATCCAAAACATCAACAT+TGG | - | chr3.2:6716765-6716784 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCAC+TGG | - | chr3.2:6714761-6714780 | None:intergenic | 35.0% | |
| ! | GCCGATATTGATTGTTTGTT+CGG | - | chr3.2:6715291-6715310 | None:intergenic | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr3.2:6716404-6716423 | MS.gene069961:CDS | 35.0% |
| ! | TGTTGTATTTTGTTCTGGCA+TGG | + | chr3.2:6715368-6715387 | MS.gene069961:intron | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr3.2:6716440-6716459 | None:intergenic | 40.0% | |
| ACAGACGATATATACAGACC+AGG | + | chr3.2:6716052-6716071 | MS.gene069961:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr3.2:6716651-6716670 | MS.gene069961:CDS | 40.0% | |
| ATTGAGTTTACTCACTGCTG+AGG | + | chr3.2:6715729-6715748 | MS.gene069961:intron | 40.0% | |
| GAGCATTCTTATGATCAAGG+CGG | - | chr3.2:6715578-6715597 | None:intergenic | 40.0% | |
| GTACTAAAGATCGATCACAC+AGG | - | chr3.2:6715660-6715679 | None:intergenic | 40.0% | |
| GTCTGCTTAATCCTAACAAC+AGG | + | chr3.2:6714720-6714739 | MS.gene069961:CDS | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr3.2:6716650-6716669 | MS.gene069961:CDS | 40.0% | |
| TGGTCTGTATATATCGTCTG+TGG | - | chr3.2:6716053-6716072 | None:intergenic | 40.0% | |
| TGTCTTCTGCAACATCAACT+TGG | - | chr3.2:6715186-6715205 | None:intergenic | 40.0% | |
| TGTTCTGGCATGGATAGTAT+AGG | + | chr3.2:6715378-6715397 | MS.gene069961:intron | 40.0% | |
| ! | GCCTTCCAATGTTGATGTTT+TGG | + | chr3.2:6716757-6716776 | MS.gene069961:CDS | 40.0% |
| ! | TTTTGAACTGCCTAGTGTGT+AGG | + | chr3.2:6715411-6715430 | MS.gene069961:intron | 40.0% |
| ! | TTTTTCATGGGCTTTGCTCA+TGG | + | chr3.2:6716117-6716136 | MS.gene069961:CDS | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr3.2:6716334-6716353 | MS.gene069961:CDS | 40.0% |
| !! | TTATGCATTGGTCTTCAGCT+TGG | + | chr3.2:6716333-6716352 | MS.gene069961:CDS | 40.0% |
| !!! | CTAGCATTTTTTGGGCAGAT+GGG | + | chr3.2:6715209-6715228 | MS.gene069961:CDS | 40.0% |
| AACCGCATCAGTTGACTGTT+GGG | - | chr3.2:6716557-6716576 | None:intergenic | 45.0% | |
| AATTCAACAACGCACTAGCC+TGG | - | chr3.2:6716073-6716092 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAACTGATG+CGG | + | chr3.2:6716552-6716571 | MS.gene069961:CDS | 45.0% | |
| CGATCACACAGGACAATTTC+TGG | - | chr3.2:6715649-6715668 | None:intergenic | 45.0% | |
| CGTCAAAAGGAGATGGTGAT+TGG | + | chr3.2:6715091-6715110 | MS.gene069961:CDS | 45.0% | |
| CTCAGGTAACACAAATGCTC+TGG | - | chr3.2:6714908-6714927 | None:intergenic | 45.0% | |
| CTGGCATGGATAGTATAGGT+AGG | + | chr3.2:6715382-6715401 | MS.gene069961:intron | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr3.2:6714788-6714807 | MS.gene069961:CDS | 45.0% | |
| GAAGGCCTACTTCAGACTTT+AGG | + | chr3.2:6716285-6716304 | MS.gene069961:CDS | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | + | chr3.2:6715010-6715029 | MS.gene069961:CDS | 45.0% | |
| GACGATTCGTCAAAAGGAGA+TGG | + | chr3.2:6715084-6715103 | MS.gene069961:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr3.2:6716493-6716512 | MS.gene069961:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr3.2:6714797-6714816 | None:intergenic | 45.0% | |
| ! | AGCCACCTAAAGTCTGAAGT+AGG | - | chr3.2:6716293-6716312 | None:intergenic | 45.0% |
| ! | AGGTGGCTTGTCCAAACTTA+CGG | + | chr3.2:6716305-6716324 | MS.gene069961:CDS | 45.0% |
| ! | GCACGGAGAATCTTCCTTTT+CGG | + | chr3.2:6715035-6715054 | MS.gene069961:CDS | 45.0% |
| ! | TCATGCTGAGTTGGACTTCA+AGG | + | chr3.2:6716502-6716521 | MS.gene069961:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr3.2:6714800-6714819 | MS.gene069961:CDS | 45.0% |
| !!! | GCTAGCATTTTTTGGGCAGA+TGG | + | chr3.2:6715208-6715227 | MS.gene069961:CDS | 45.0% |
| GAACCGCATCAGTTGACTGT+TGG | - | chr3.2:6716558-6716577 | None:intergenic | 50.0% | |
| GACACACACACCTACACACT+AGG | - | chr3.2:6715424-6715443 | None:intergenic | 50.0% | |
| GGCCTACTTCAGACTTTAGG+TGG | + | chr3.2:6716288-6716307 | MS.gene069961:CDS | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | + | chr3.2:6715013-6715032 | MS.gene069961:CDS | 50.0% | |
| ! | TCTGACGTTGGCCTGTTGTT+AGG | - | chr3.2:6714734-6714753 | None:intergenic | 50.0% |
| ACCACTGGACTGTCTGACGT+TGG | - | chr3.2:6714746-6714765 | None:intergenic | 55.0% | |
| TGGGCTTTGCTCATGGCACA+TGG | + | chr3.2:6716124-6716143 | MS.gene069961:CDS | 55.0% | |
| GCCAACGTCAGACAGTCCAG+TGG | + | chr3.2:6714742-6714761 | MS.gene069961:CDS | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr3.2:6715018-6715037 | MS.gene069961:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 6714431 | 6716793 | 6714431 | ID=MS.gene069961 |
| chr3.2 | mRNA | 6714431 | 6716793 | 6714431 | ID=MS.gene069961.t1;Parent=MS.gene069961 |
| chr3.2 | exon | 6714431 | 6715316 | 6714431 | ID=MS.gene069961.t1.exon1;Parent=MS.gene069961.t1 |
| chr3.2 | CDS | 6714431 | 6715316 | 6714431 | ID=cds.MS.gene069961.t1;Parent=MS.gene069961.t1 |
| chr3.2 | exon | 6715922 | 6716793 | 6715922 | ID=MS.gene069961.t1.exon2;Parent=MS.gene069961.t1 |
| chr3.2 | CDS | 6715922 | 6716793 | 6715922 | ID=cds.MS.gene069961.t1;Parent=MS.gene069961.t1 |
| Gene Sequence |
| Protein sequence |
