AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070061

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070061.t1 MTR_5g081860 98.893 271 3 0 1 271 1 271 0.0 564
MS.gene070061.t1 MTR_7g067080 62.150 214 72 2 3 209 11 222 9.46e-90 269
MS.gene070061.t1 MTR_5g069710 61.386 202 71 3 2 198 4 203 9.85e-85 256
MS.gene070061.t1 MTR_3g462790 64.796 196 56 4 16 200 27 220 2.21e-83 253
MS.gene070061.t1 MTR_1g111830 49.733 187 80 4 25 204 22 201 4.75e-55 178
MS.gene070061.t1 MTR_8g063600 48.634 183 92 1 20 202 3 183 1.33e-50 168
MS.gene070061.t1 MTR_4g111975 42.381 210 81 5 27 201 8 212 3.15e-47 159
MS.gene070061.t1 MTR_8g063870 46.111 180 79 3 25 202 6 169 3.71e-42 145
MS.gene070061.t1 MTR_2g100930 61.111 90 33 1 120 209 104 191 1.67e-29 114
MS.gene070061.t1 MTR_6g092540 69.863 73 20 1 119 191 91 161 8.70e-29 111
MS.gene070061.t1 MTR_4g100630 64.198 81 27 1 120 200 90 168 7.86e-28 109
MS.gene070061.t1 MTR_4g015130 71.429 70 18 1 134 203 2 69 1.05e-27 102
MS.gene070061.t1 MTR_8g101650 60.714 84 30 1 116 199 96 176 7.56e-27 105
MS.gene070061.t1 MTR_5g037080 60.000 90 34 1 112 201 89 176 8.38e-26 103
MS.gene070061.t1 MTR_4g107230 71.186 59 17 0 113 171 72 130 1.31e-24 100
MS.gene070061.t1 MTR_5g027570 49.524 105 49 1 92 192 55 159 1.02e-23 96.3
MS.gene070061.t1 MTR_5g088010 58.904 73 29 1 121 192 56 128 5.04e-23 95.1
MS.gene070061.t1 MTR_1g033600 39.695 131 65 3 25 142 10 139 6.06e-23 91.7
MS.gene070061.t1 MTR_3g104370 51.429 105 44 4 90 191 58 158 1.08e-22 93.6
MS.gene070061.t1 MTR_5g088060 58.025 81 32 2 113 192 261 340 1.08e-21 94.4
MS.gene070061.t1 MTR_5g488160 58.025 81 32 2 113 192 261 340 1.08e-21 94.4
MS.gene070061.t1 MTR_1g033620 70.968 62 16 1 141 202 21 80 2.57e-21 90.1
MS.gene070061.t1 MTR_1g022290 55.882 68 30 0 22 89 2 69 5.23e-21 85.1
MS.gene070061.t1 MTR_0036s0260 57.971 69 27 1 125 193 28 94 3.11e-20 86.7
MS.gene070061.t1 MTR_2g090305 57.971 69 27 1 125 193 28 94 8.88e-20 84.7
MS.gene070061.t1 MTR_3g111880 53.846 65 30 0 25 89 5 69 1.92e-19 81.3
MS.gene070061.t1 MTR_6g004250 52.941 68 32 0 22 89 5 72 1.08e-18 78.6
MS.gene070061.t1 MTR_5g027550 58.904 73 29 1 121 192 73 145 1.50e-18 82.4
MS.gene070061.t1 MTR_5g075760 33.000 200 119 7 26 218 12 203 2.72e-18 81.6
MS.gene070061.t1 MTR_3g070110 40.764 157 79 7 48 196 21 171 3.54e-18 81.3
MS.gene070061.t1 MTR_7g089210 52.941 68 32 0 30 97 15 82 5.62e-18 77.0
MS.gene070061.t1 MTR_5g020170 45.333 75 41 0 15 89 7 81 1.69e-17 76.3
MS.gene070061.t1 MTR_3g116720 52.381 63 30 0 27 89 16 78 2.00e-17 75.5
MS.gene070061.t1 MTR_3g013440 47.945 73 37 1 18 89 1 73 1.28e-16 73.6
MS.gene070061.t1 MTR_5g075790 30.000 200 124 5 26 218 21 211 1.40e-16 77.0
MS.gene070061.t1 MTR_1g048660 53.030 66 29 1 126 191 13 76 1.67e-16 73.2
MS.gene070061.t1 MTR_8g077360 49.231 65 32 1 25 89 3 66 2.80e-15 69.3
MS.gene070061.t1 MTR_8g077380 49.231 65 32 1 25 89 3 66 2.93e-15 69.3
MS.gene070061.t1 MTR_8g077390 49.231 65 32 1 25 89 3 66 2.93e-15 69.3
MS.gene070061.t1 MTR_8g077420 50.820 61 29 1 27 87 5 64 6.15e-14 65.9
MS.gene070061.t1 MTR_5g020540 50.820 61 29 1 27 87 4 63 3.14e-13 63.5
MS.gene070061.t1 MTR_1g083180 55.714 70 29 2 127 195 63 131 3.37e-13 67.0
MS.gene070061.t1 MTR_3g111920 41.270 63 37 0 27 89 3 65 9.51e-13 62.8
MS.gene070061.t1 MTR_6g043490 41.026 78 41 2 125 197 107 184 5.93e-12 64.3
MS.gene070061.t1 MTR_6g043480 53.191 47 22 0 125 171 107 153 6.41e-12 63.9
MS.gene070061.t1 MTR_8g072990 50.000 50 25 0 122 171 97 146 9.91e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070061.t1 AT2G38090 59.716 211 69 2 3 199 5 213 4.20e-86 259
MS.gene070061.t1 AT3G11280 59.910 222 70 6 3 212 1 215 1.18e-80 244
MS.gene070061.t1 AT3G11280 59.910 222 70 6 3 212 1 215 1.18e-80 244
MS.gene070061.t1 AT5G05790 56.828 227 88 6 3 222 4 227 1.41e-79 241
MS.gene070061.t1 AT5G05790 56.828 227 88 6 3 222 4 227 1.41e-79 241
MS.gene070061.t1 AT5G58900 58.019 212 70 4 16 210 15 224 4.01e-77 236
MS.gene070061.t1 AT5G01200 54.067 209 73 6 6 196 12 215 4.05e-67 209
MS.gene070061.t1 AT5G08520 51.087 184 80 2 27 202 12 193 9.10e-54 176
MS.gene070061.t1 AT1G49010 45.050 202 81 4 21 194 2 201 1.76e-49 166
MS.gene070061.t1 AT5G04760 43.333 210 89 7 25 231 4 186 2.94e-46 154
MS.gene070061.t1 AT5G23650 42.654 211 89 5 20 215 6 199 5.51e-44 152
MS.gene070061.t1 AT3G10580 38.164 207 98 7 27 231 8 186 2.20e-35 127
MS.gene070061.t1 AT3G10580 38.164 207 98 7 27 231 8 186 4.51e-35 127
MS.gene070061.t1 AT4G09450 42.515 167 80 4 26 192 6 156 4.31e-32 117
MS.gene070061.t1 AT5G56840 63.415 82 29 1 120 201 86 166 1.11e-27 107
MS.gene070061.t1 AT5G47390 66.250 80 25 1 112 191 83 160 1.26e-27 109
MS.gene070061.t1 AT5G61620 52.941 102 46 1 91 192 74 173 7.05e-27 106
MS.gene070061.t1 AT1G19000 51.327 113 48 3 112 219 89 199 3.36e-25 101
MS.gene070061.t1 AT1G19000 51.327 113 48 3 112 219 89 199 3.36e-25 101
MS.gene070061.t1 AT1G70000 72.131 61 17 0 112 172 85 145 6.02e-25 100
MS.gene070061.t1 AT1G70000 72.131 61 17 0 112 172 85 145 6.02e-25 100
MS.gene070061.t1 AT3G16350 55.238 105 42 2 116 217 125 227 6.11e-25 102
MS.gene070061.t1 AT3G10590 40.196 204 96 12 27 216 7 198 5.08e-23 94.0
MS.gene070061.t1 AT1G74840 75.000 52 13 0 120 171 91 142 5.57e-22 92.0
MS.gene070061.t1 AT1G74840 75.000 52 13 0 120 171 91 142 7.96e-22 92.0
MS.gene070061.t1 AT1G75250 55.556 63 28 0 27 89 12 74 6.82e-18 77.0
MS.gene070061.t1 AT1G75250 55.556 63 28 0 27 89 12 74 6.95e-18 78.2
MS.gene070061.t1 AT4G39250 48.485 66 34 0 27 92 14 79 1.56e-17 76.3
MS.gene070061.t1 AT2G21650 47.761 67 35 0 27 93 14 80 3.82e-16 72.8
MS.gene070061.t1 AT2G18328 54.098 61 27 1 29 89 14 73 4.12e-14 66.6
MS.gene070061.t1 AT1G19510 51.724 58 28 0 32 89 17 74 4.71e-13 64.3
MS.gene070061.t1 AT3G10595 29.054 148 81 5 24 171 3 126 2.62e-12 64.3

Find 54 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCCTATGCAGCAGAAAA+TGG 0.222210 5.3:+66208779 MS.gene070061:CDS
TATGCTAAGCTGAAAGTTTC+GGG 0.251091 5.3:+66208876 MS.gene070061:CDS
CTGATGGGACTTCTAAAGTA+TGG 0.266546 5.3:+66208549 MS.gene070061:CDS
ACCAGGAATCGGAACATTTC+CGG 0.268577 5.3:-66207681 None:intergenic
GCCGGAAATGTTCCGATTCC+TGG 0.317971 5.3:+66207680 MS.gene070061:CDS
TTATGCTAAGCTGAAAGTTT+CGG 0.326332 5.3:+66208875 MS.gene070061:CDS
CTTCTCTACTCCATTCTGTT+TGG 0.332735 5.3:-66207508 None:intergenic
AGGAGACACATTGACTAATA+AGG 0.335368 5.3:-66208763 None:intergenic
ACATAAAATAAGGAGAATAA+AGG 0.337256 5.3:-66207454 None:intergenic
TGTGATTTAAGGTATGGATT+TGG 0.345223 5.3:+66207427 None:intergenic
TGATGTGATTAAGCAGTATA+GGG 0.364968 5.3:+66207628 MS.gene070061:CDS
AGAAGGCATGTGACTGTTAG+AGG 0.384719 5.3:+66207764 MS.gene070061:CDS
AAGATTGCTGAGATGATTCC+TGG 0.391655 5.3:+66207593 MS.gene070061:CDS
TTGATGTGATTAAGCAGTAT+AGG 0.399334 5.3:+66207627 MS.gene070061:CDS
TTTGTATCCAACATAAAATA+AGG 0.405866 5.3:-66207464 None:intergenic
ATAAGGCAAAAGGTTTCTTC+TGG 0.415949 5.3:+66208657 MS.gene070061:CDS
GCAATCTTAAGCCATCTATC+TGG 0.417904 5.3:-66207578 None:intergenic
TAAAGTATGGCAAAGGCGAC+TGG 0.439380 5.3:+66208562 MS.gene070061:CDS
CATAAAATAAGGAGAATAAA+GGG 0.445828 5.3:-66207453 None:intergenic
GATTAAGCAGTATAGGGAAT+TGG 0.449715 5.3:+66207634 MS.gene070061:CDS
GCATGACTTGCTACTTGTGT+TGG 0.455619 5.3:-66208621 None:intergenic
TGCTCTTGCTATATATGATA+AGG 0.457525 5.3:+66207550 MS.gene070061:CDS
ATAAGGATACACCAGATAGA+TGG 0.475384 5.3:+66207567 MS.gene070061:CDS
ATGCACAAAAGTACTACATA+AGG 0.480834 5.3:+66208640 MS.gene070061:CDS
AGAGGAAGAAAGGTGTTCCT+TGG 0.489408 5.3:+66207798 MS.gene070061:CDS
AAAGTACTACATAAGGCAAA+AGG 0.510073 5.3:+66208647 MS.gene070061:CDS
AATAAGGACTTGTTATCTGA+TGG 0.512003 5.3:-66208747 None:intergenic
GAGGCAAGATAACCAGGAAT+CGG 0.520347 5.3:-66207692 None:intergenic
TGATGGATCACCACAAGGGC+AGG 0.524353 5.3:+66208824 MS.gene070061:CDS
TCAGCTTAGCATAAGCCTCA+TGG 0.535139 5.3:-66208866 None:intergenic
TCTCCTATGCAGCAGAAAAT+GGG 0.535185 5.3:+66208780 MS.gene070061:CDS
AGTACTAGCCACTACAATGA+TGG 0.540673 5.3:+66208807 MS.gene070061:CDS
TCTGATCATGAGAGGAAGAA+AGG 0.544690 5.3:+66207788 MS.gene070061:CDS
AAAGAAGAGGCAAGATAACC+AGG 0.552310 5.3:-66207698 None:intergenic
AAGAGAGTTACCAAACAGAA+TGG 0.556624 5.3:+66207498 MS.gene070061:CDS
AGGCAAAAGGTTTCTTCTGG+AGG 0.582472 5.3:+66208660 MS.gene070061:CDS
ACTATGATGGAAACAGAAGA+AGG 0.582942 5.3:+66207747 MS.gene070061:CDS
TCATAGAGATCCTGCCCTTG+TGG 0.585420 5.3:-66208834 None:intergenic
CTTGGACTGAAGAGGAACAT+AGG 0.585629 5.3:+66207816 MS.gene070061:CDS
CTATGTTCCTCTTCAGTCCA+AGG 0.586053 5.3:-66207815 None:intergenic
CTATGCAGCAGAAAATGGGT+TGG 0.587490 5.3:+66208784 MS.gene070061:CDS
AGGTGTTCCTTGGACTGAAG+AGG 0.592742 5.3:+66207808 MS.gene070061:CDS
GTTGTGATATCATGAATGCT+TGG 0.600782 5.3:-66208699 None:intergenic
CTATGACTGCTCTTTCCATG+AGG 0.601527 5.3:+66208851 MS.gene070061:CDS
GCTTCTAGAGACTTCAACAA+AGG 0.612158 5.3:+66208909 MS.gene070061:CDS
GATGTGAGTGAAATTGAGGC+CGG 0.613302 5.3:+66207662 MS.gene070061:CDS
TACAATGATGGATCACCACA+AGG 0.622159 5.3:+66208819 MS.gene070061:CDS
AACTTCAAAGGTGAAAGAAG+AGG 0.626616 5.3:-66207711 None:intergenic
ACATCAATAACAGTCTTACC+AGG 0.630015 5.3:-66207611 None:intergenic
TTAGAGGTTCTGATCATGAG+AGG 0.633143 5.3:+66207780 MS.gene070061:CDS
GTGGTGATCCATCATTGTAG+TGG 0.633599 5.3:-66208815 None:intergenic
AGAAGATGTGAGTGAAATTG+AGG 0.635385 5.3:+66207658 MS.gene070061:CDS
GGACTTCTAAAGTATGGCAA+AGG 0.636983 5.3:+66208555 MS.gene070061:CDS
ACAATGATGGATCACCACAA+GGG 0.720384 5.3:+66208820 MS.gene070061:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAACCTAAAATCT+AGG - chr5.3:66208178-66208197 None:intergenic 15.0%
!!! AATAACAAGTAACTTTTAAA+AGG - chr5.3:66208353-66208372 None:intergenic 15.0%
!!! ATAACAAGTAACTTTTAAAA+GGG - chr5.3:66208352-66208371 None:intergenic 15.0%
!! ACATAAAATAAGGAGAATAA+AGG - chr5.3:66207457-66207476 None:intergenic 20.0%
!! ATTGAACTTGATTATTAGTT+TGG + chr5.3:66208370-66208389 MS.gene070061:intron 20.0%
!! CATAAAATAAGGAGAATAAA+GGG - chr5.3:66207456-66207475 None:intergenic 20.0%
!! TTTGTATCCAACATAAAATA+AGG - chr5.3:66207467-66207486 None:intergenic 20.0%
!!! ATTTCATTTTCCTAGATTTT+AGG + chr5.3:66208165-66208184 MS.gene070061:intron 20.0%
!!! ATTTTATGTTGGATACAAAT+TGG + chr5.3:66207468-66207487 MS.gene070061:CDS 20.0%
!!! TAACAAGTAACTTTTAAAAG+GGG - chr5.3:66208351-66208370 None:intergenic 20.0%
!!! TTATTCTCCTTATTTTATGT+TGG + chr5.3:66207457-66207476 MS.gene070061:CDS 20.0%
! AGAGACGGAAAAAATAAAAT+CGG + chr5.3:66207974-66207993 MS.gene070061:intron 25.0%
! ATAAGACAATTGAAGATTCT+AGG - chr5.3:66207855-66207874 None:intergenic 25.0%
! CTAGAAAAATTGAAGTAAGA+CGG + chr5.3:66207946-66207965 MS.gene070061:intron 25.0%
! TAGCTAATGAATCATATTCA+TGG + chr5.3:66208114-66208133 MS.gene070061:intron 25.0%
!!! ATGTTAAATTGAGTTGGTTT+AGG + chr5.3:66208442-66208461 MS.gene070061:intron 25.0%
!!! TTGTTTTACTCTTTTCTCTA+TGG + chr5.3:66207883-66207902 MS.gene070061:intron 25.0%
ATCGACATGTTAAATTGAGT+TGG + chr5.3:66208436-66208455 MS.gene070061:intron 30.0%
ATTTACTCTCTGTGTATGTT+TGG + chr5.3:66208504-66208523 MS.gene070061:intron 30.0%
GTCGAAAAACAAAACTATGA+TGG + chr5.3:66207734-66207753 MS.gene070061:CDS 30.0%
TGATGTGATTAAGCAGTATA+GGG + chr5.3:66207628-66207647 MS.gene070061:CDS 30.0%
TTATGCTAAGCTGAAAGTTT+CGG + chr5.3:66208875-66208894 MS.gene070061:CDS 30.0%
TTGATGTGATTAAGCAGTAT+AGG + chr5.3:66207627-66207646 MS.gene070061:CDS 30.0%
! AAAGTACTACATAAGGCAAA+AGG + chr5.3:66208647-66208666 MS.gene070061:CDS 30.0%
! TGCTCTTGCTATATATGATA+AGG + chr5.3:66207550-66207569 MS.gene070061:CDS 30.0%
!! AATAAGGACTTGTTATCTGA+TGG - chr5.3:66208750-66208769 None:intergenic 30.0%
!! ATGCACAAAAGTACTACATA+AGG + chr5.3:66208640-66208659 MS.gene070061:CDS 30.0%
!! GTAACTTTTAAAAGGGGTAA+AGG - chr5.3:66208345-66208364 None:intergenic 30.0%
!! TTGTTTTTCGACAACTTCAA+AGG - chr5.3:66207726-66207745 None:intergenic 30.0%
!!! AGTTTTTTCTTAGATTGTGG+AGG + chr5.3:66207907-66207926 MS.gene070061:intron 30.0%
!!! GGAAGTTTTTTCTTAGATTG+TGG + chr5.3:66207904-66207923 MS.gene070061:intron 30.0%
AACTTCAAAGGTGAAAGAAG+AGG - chr5.3:66207714-66207733 None:intergenic 35.0%
AAGAGAGTTACCAAACAGAA+TGG + chr5.3:66207498-66207517 MS.gene070061:CDS 35.0%
ACATCAATAACAGTCTTACC+AGG - chr5.3:66207614-66207633 None:intergenic 35.0%
AGAAGATGTGAGTGAAATTG+AGG + chr5.3:66207658-66207677 MS.gene070061:CDS 35.0%
ATAAGGATACACCAGATAGA+TGG + chr5.3:66207567-66207586 MS.gene070061:CDS 35.0%
ATAAGGCAAAAGGTTTCTTC+TGG + chr5.3:66208657-66208676 MS.gene070061:CDS 35.0%
GAGTCTGTAACACTTAATGA+TGG + chr5.3:66208008-66208027 MS.gene070061:intron 35.0%
GATTAAGCAGTATAGGGAAT+TGG + chr5.3:66207634-66207653 MS.gene070061:CDS 35.0%
GTTGTGATATCATGAATGCT+TGG - chr5.3:66208702-66208721 None:intergenic 35.0%
TATGCTAAGCTGAAAGTTTC+GGG + chr5.3:66208876-66208895 MS.gene070061:CDS 35.0%
! ACTATGATGGAAACAGAAGA+AGG + chr5.3:66207747-66207766 MS.gene070061:CDS 35.0%
! AGGAGACACATTGACTAATA+AGG - chr5.3:66208766-66208785 None:intergenic 35.0%
! TCTGTGTATGTTTGGAATCA+CGG + chr5.3:66208512-66208531 MS.gene070061:intron 35.0%
!! TTCAACAAAGGAGCTGTTTT+TGG + chr5.3:66208921-66208940 MS.gene070061:CDS 35.0%
AAAGAAGAGGCAAGATAACC+AGG - chr5.3:66207701-66207720 None:intergenic 40.0%
AAGATTGCTGAGATGATTCC+TGG + chr5.3:66207593-66207612 MS.gene070061:CDS 40.0%
AGTAAGACGGAAGTTAGAGA+CGG + chr5.3:66207959-66207978 MS.gene070061:intron 40.0%
AGTACTAGCCACTACAATGA+TGG + chr5.3:66208807-66208826 MS.gene070061:CDS 40.0%
CTTCTCTACTCCATTCTGTT+TGG - chr5.3:66207511-66207530 None:intergenic 40.0%
GCAATCTTAAGCCATCTATC+TGG - chr5.3:66207581-66207600 None:intergenic 40.0%
GTAAAGGCAAACTCCAATTG+AGG - chr5.3:66208329-66208348 None:intergenic 40.0%
TCTCCTATGCAGCAGAAAAT+GGG + chr5.3:66208780-66208799 MS.gene070061:CDS 40.0%
TCTGATCATGAGAGGAAGAA+AGG + chr5.3:66207788-66207807 MS.gene070061:CDS 40.0%
! GCTTCTAGAGACTTCAACAA+AGG + chr5.3:66208909-66208928 MS.gene070061:CDS 40.0%
! TTAGAGGTTCTGATCATGAG+AGG + chr5.3:66207780-66207799 MS.gene070061:CDS 40.0%
!! ACAATGATGGATCACCACAA+GGG + chr5.3:66208820-66208839 MS.gene070061:CDS 40.0%
!! CTGATGGGACTTCTAAAGTA+TGG + chr5.3:66208549-66208568 MS.gene070061:CDS 40.0%
!! GGACTTCTAAAGTATGGCAA+AGG + chr5.3:66208555-66208574 MS.gene070061:CDS 40.0%
!! TACAATGATGGATCACCACA+AGG + chr5.3:66208819-66208838 MS.gene070061:CDS 40.0%
ACCAGGAATCGGAACATTTC+CGG - chr5.3:66207684-66207703 None:intergenic 45.0%
AGGCAAAAGGTTTCTTCTGG+AGG + chr5.3:66208660-66208679 MS.gene070061:CDS 45.0%
CTATGACTGCTCTTTCCATG+AGG + chr5.3:66208851-66208870 MS.gene070061:CDS 45.0%
CTATGCAGCAGAAAATGGGT+TGG + chr5.3:66208784-66208803 MS.gene070061:CDS 45.0%
CTATGTTCCTCTTCAGTCCA+AGG - chr5.3:66207818-66207837 None:intergenic 45.0%
CTTGGACTGAAGAGGAACAT+AGG + chr5.3:66207816-66207835 MS.gene070061:CDS 45.0%
GAGGCAAGATAACCAGGAAT+CGG - chr5.3:66207695-66207714 None:intergenic 45.0%
GATGTGAGTGAAATTGAGGC+CGG + chr5.3:66207662-66207681 MS.gene070061:CDS 45.0%
GCAGATAATGCAGCCTCAAT+TGG + chr5.3:66208313-66208332 MS.gene070061:intron 45.0%
GTCTCCTATGCAGCAGAAAA+TGG + chr5.3:66208779-66208798 MS.gene070061:CDS 45.0%
GTGGTGATCCATCATTGTAG+TGG - chr5.3:66208818-66208837 None:intergenic 45.0%
TAAAGTATGGCAAAGGCGAC+TGG + chr5.3:66208562-66208581 MS.gene070061:CDS 45.0%
TCAGCTTAGCATAAGCCTCA+TGG - chr5.3:66208869-66208888 None:intergenic 45.0%
! AGAAGGCATGTGACTGTTAG+AGG + chr5.3:66207764-66207783 MS.gene070061:CDS 45.0%
! CAACCCATTTTCTGCTGCAT+AGG - chr5.3:66208786-66208805 None:intergenic 45.0%
! GCGTACAGACGTTTTCTGAT+GGG + chr5.3:66208534-66208553 MS.gene070061:intron 45.0%
!! AGAGGAAGAAAGGTGTTCCT+TGG + chr5.3:66207798-66207817 MS.gene070061:CDS 45.0%
!! GCATGACTTGCTACTTGTGT+TGG - chr5.3:66208624-66208643 None:intergenic 45.0%
AGGTGTTCCTTGGACTGAAG+AGG + chr5.3:66207808-66207827 MS.gene070061:CDS 50.0%
TCATAGAGATCCTGCCCTTG+TGG - chr5.3:66208837-66208856 None:intergenic 50.0%
! GGCGTACAGACGTTTTCTGA+TGG + chr5.3:66208533-66208552 MS.gene070061:intron 50.0%
GCCGGAAATGTTCCGATTCC+TGG + chr5.3:66207680-66207699 MS.gene070061:CDS 55.0%
! TGATGGATCACCACAAGGGC+AGG + chr5.3:66208824-66208843 MS.gene070061:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 66207440 66208959 66207440 ID=MS.gene070061
chr5.3 mRNA 66207440 66208959 66207440 ID=MS.gene070061.t1;Parent=MS.gene070061
chr5.3 exon 66207440 66207837 66207440 ID=MS.gene070061.t1.exon1;Parent=MS.gene070061.t1
chr5.3 CDS 66207440 66207837 66207440 ID=cds.MS.gene070061.t1;Parent=MS.gene070061.t1
chr5.3 exon 66208542 66208959 66208542 ID=MS.gene070061.t1.exon2;Parent=MS.gene070061.t1
chr5.3 CDS 66208542 66208959 66208542 ID=cds.MS.gene070061.t1;Parent=MS.gene070061.t1
Gene Sequence

>MS.gene070061

ATGGATTTGGAAACCCTTTATTCTCCTTATTTTATGTTGGATACAAATTGGCTTGTTGAAGAGAGTTACCAAACAGAATGGAGTAGAGAAGATAACAAGAAGTTTGAAAGTGCTCTTGCTATATATGATAAGGATACACCAGATAGATGGCTTAAGATTGCTGAGATGATTCCTGGTAAGACTGTTATTGATGTGATTAAGCAGTATAGGGAATTGGTAGAAGATGTGAGTGAAATTGAGGCCGGAAATGTTCCGATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAAGTTGTCGAAAAACAAAACTATGATGGAAACAGAAGAAGGCATGTGACTGTTAGAGGTTCTGATCATGAGAGGAAGAAAGGTGTTCCTTGGACTGAAGAGGAACATAGGTGAGTTTCATCAACCTAGAATCTTCAATTGTCTTATTGTTTTTGTTGTTTTACTCTTTTCTCTATGGAAGTTTTTTCTTAGATTGTGGAGGAAGAAAATCTATACTACTAGAAAAATTGAAGTAAGACGGAAGTTAGAGACGGAAAAAATAAAATCGGTCACTAAATTTGAGTCTGTAACACTTAATGATGGAGTTTGAGACGAATTTCTCATTTTTTTCGTCTCAAGATTTCTGTCGCAATTTCAATTTTTCAAGTAGTATTGATATTGAAATTTAGCTAATGAATCATATTCATGGATATACTGCAATAGCAACTCAATTTTTCATTTCATTTTCCTAGATTTTAGGTTTTTTATTTCTCATACAATTCTAATCGACTTTTATAATAGCTGATTTGTTAATATAGTGAAATAATTTGATTTTAGTAGCAGTCATGTTGCGATTTTTGATATTGCTTAAAATCACAATCACATGCAGATAATGCAGCCTCAATTGGAGTTTGCCTTTACCCCTTTTAAAAGTTACTTGTTATTGAACTTGATTATTAGTTTGGATAAGTATATTAAATTTTGAACTTCATGCAAAAGCACAAATCAATCGACATGTTAAATTGAGTTGGTTTAGGAGTTTGCCTTTACCCCTTTTAAAAGTTACTTGTTATTGAATTTACTCTCTGTGTATGTTTGGAATCACGGCGTACAGACGTTTTCTGATGGGACTTCTAAAGTATGGCAAAGGCGACTGGAGAAACATCTCGCGCAATTTCGTCGTGACAAAGACTCCAACACAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCTTCTGGAGGCAAAGATAAAAGAAGACCAAGCATTCATGATATCACAACTGTTACTCTCACAGAAACTTCTTCTCCATCAGATAACAAGTCCTTATTAGTCAATGTGTCTCCTATGCAGCAGAAAATGGGTTGGAGTACTAGCCACTACAATGATGGATCACCACAAGGGCAGGATCTCTATGACTGCTCTTTCCATGAGGCTTATGCTAAGCTGAAAGTTTCGGGTTTCGCGACAGCTTCTAGAGACTTCAACAAAGGAGCTGTTTTTGGTATTCATGCACTGTAA
Protein sequence

>MS.gene070061.t1

MDLETLYSPYFMLDTNWLVEESYQTEWSREDNKKFESALAIYDKDTPDRWLKIAEMIPGKTVIDVIKQYRELVEDVSEIEAGNVPIPGYLASSFTFEVVEKQNYDGNRRRHVTVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTVTLTETSSPSDNKSLLVNVSPMQQKMGWSTSHYNDGSPQGQDLYDCSFHEAYAKLKVSGFATASRDFNKGAVFGIHAL