Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070101.t1 | XP_003612622.1 | 95.2 | 331 | 9 | 1 | 1 | 331 | 1 | 324 | 7.50E-150 | 540 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070101.t1 | Q6ZIK5 | 66.3 | 98 | 25 | 2 | 15 | 104 | 63 | 160 | 1.4e-32 | 141.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070101.t1 | G7K6W0 | 95.2 | 331 | 9 | 1 | 1 | 331 | 1 | 324 | 5.4e-150 | 540.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene070101.t1 | TF | GRF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070101.t1 | MTR_5g027030 | 92.145 | 331 | 19 | 1 | 1 | 331 | 1 | 324 | 0.0 | 587 |
| MS.gene070101.t1 | MTR_0001s0490 | 48.095 | 210 | 75 | 9 | 16 | 212 | 25 | 213 | 1.82e-49 | 168 |
| MS.gene070101.t1 | MTR_4g125490 | 34.201 | 269 | 148 | 6 | 16 | 256 | 9 | 276 | 3.40e-42 | 151 |
| MS.gene070101.t1 | MTR_2g041430 | 60.177 | 113 | 29 | 2 | 16 | 112 | 7 | 119 | 1.56e-40 | 145 |
| MS.gene070101.t1 | MTR_2g041430 | 60.177 | 113 | 29 | 2 | 16 | 112 | 7 | 119 | 1.94e-40 | 145 |
| MS.gene070101.t1 | MTR_2g041430 | 60.177 | 113 | 29 | 2 | 16 | 112 | 7 | 119 | 2.25e-40 | 145 |
| MS.gene070101.t1 | MTR_8g020560 | 58.333 | 108 | 33 | 2 | 17 | 112 | 12 | 119 | 3.56e-39 | 142 |
| MS.gene070101.t1 | MTR_1g017490 | 56.897 | 116 | 34 | 2 | 16 | 115 | 11 | 126 | 9.26e-37 | 138 |
| MS.gene070101.t1 | MTR_1g017490 | 56.897 | 116 | 34 | 2 | 16 | 115 | 144 | 259 | 1.44e-36 | 139 |
| MS.gene070101.t1 | MTR_7g104050 | 62.037 | 108 | 29 | 4 | 17 | 112 | 79 | 186 | 1.52e-35 | 133 |
| MS.gene070101.t1 | MTR_7g104050 | 62.037 | 108 | 29 | 4 | 17 | 112 | 79 | 186 | 1.57e-35 | 132 |
| MS.gene070101.t1 | MTR_3g092330 | 50.459 | 109 | 46 | 2 | 14 | 121 | 111 | 212 | 5.68e-27 | 111 |
| MS.gene070101.t1 | MTR_8g035910 | 45.794 | 107 | 42 | 3 | 15 | 114 | 48 | 145 | 1.40e-19 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070101.t1 | AT3G13960 | 57.273 | 110 | 35 | 2 | 15 | 112 | 15 | 124 | 1.23e-38 | 141 |
| MS.gene070101.t1 | AT4G37740 | 40.976 | 205 | 96 | 6 | 16 | 201 | 164 | 362 | 3.41e-38 | 142 |
| MS.gene070101.t1 | AT3G52910 | 56.250 | 112 | 33 | 3 | 17 | 112 | 83 | 194 | 2.91e-33 | 127 |
| MS.gene070101.t1 | AT2G36400 | 54.783 | 115 | 37 | 3 | 17 | 116 | 77 | 191 | 3.42e-33 | 127 |
| MS.gene070101.t1 | AT2G22840 | 54.128 | 109 | 36 | 2 | 16 | 112 | 133 | 239 | 6.20e-31 | 122 |
| MS.gene070101.t1 | AT2G06200 | 50.400 | 125 | 39 | 3 | 9 | 110 | 38 | 162 | 1.72e-30 | 117 |
| MS.gene070101.t1 | AT2G06200 | 52.066 | 121 | 35 | 3 | 13 | 110 | 3 | 123 | 2.64e-30 | 115 |
| MS.gene070101.t1 | AT4G24150 | 43.066 | 137 | 58 | 3 | 17 | 137 | 112 | 244 | 6.53e-24 | 101 |
| MS.gene070101.t1 | AT4G24150 | 43.066 | 137 | 58 | 3 | 17 | 137 | 150 | 282 | 1.31e-23 | 101 |
| MS.gene070101.t1 | AT5G53660 | 46.364 | 110 | 54 | 1 | 16 | 125 | 59 | 163 | 1.28e-22 | 97.4 |
| MS.gene070101.t1 | AT4G24150 | 35.802 | 162 | 59 | 2 | 17 | 137 | 150 | 307 | 2.62e-21 | 94.7 |
| MS.gene070101.t1 | AT2G06200 | 72.917 | 48 | 11 | 1 | 65 | 110 | 4 | 51 | 6.79e-17 | 77.8 |
| MS.gene070101.t1 | AT2G45480 | 39.815 | 108 | 51 | 2 | 15 | 109 | 23 | 129 | 6.79e-17 | 80.5 |
| MS.gene070101.t1 | AT2G45480 | 39.815 | 108 | 51 | 2 | 15 | 109 | 23 | 129 | 2.24e-16 | 80.1 |
| MS.gene070101.t1 | AT2G45480 | 34.545 | 110 | 59 | 3 | 21 | 130 | 271 | 367 | 3.62e-13 | 70.5 |
| MS.gene070101.t1 | AT2G45480 | 39.815 | 108 | 51 | 2 | 15 | 109 | 21 | 127 | 2.25e-16 | 80.1 |
| MS.gene070101.t1 | AT2G45480 | 34.545 | 110 | 59 | 3 | 21 | 130 | 269 | 365 | 3.57e-13 | 70.5 |
Find 76 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTATGCTTCTTCCTCTTC+AGG | 0.174652 | 5.4:-17908678 | MS.gene070101:CDS |
| CTTCTACACCTACCTGGTTC+TGG | 0.179105 | 5.4:+17909025 | None:intergenic |
| TTTGTTTCAGTGGGTTATTA+TGG | 0.265300 | 5.4:-17909061 | MS.gene070101:intron |
| TTCTACACCTACCTGGTTCT+GGG | 0.343240 | 5.4:+17909026 | None:intergenic |
| TTGTTTCAGTGGGTTATTAT+GGG | 0.348670 | 5.4:-17909060 | MS.gene070101:intron |
| TTCCTAGATCCTTCTGTAAG+AGG | 0.359958 | 5.4:+17906867 | None:intergenic |
| GAAGGTTTAAGTTTCAATCT+TGG | 0.362165 | 5.4:-17908722 | MS.gene070101:CDS |
| CCTATGCTTCTTCCTCTTCA+GGG | 0.369011 | 5.4:-17908677 | MS.gene070101:CDS |
| AAGGTTTAAGTTTCAATCTT+GGG | 0.373864 | 5.4:-17908721 | MS.gene070101:CDS |
| GATGTTCTAGCTCTTGCCAT+TGG | 0.387285 | 5.4:+17909262 | None:intergenic |
| TTTCAATCAACATTGACATC+TGG | 0.399287 | 5.4:+17906521 | None:intergenic |
| CCTCCTCTGCAATGGAGTAT+AGG | 0.408064 | 5.4:-17906568 | MS.gene070101:CDS |
| TCCAAGGACATTGTCTTTAA+CGG | 0.410437 | 5.4:-17906668 | MS.gene070101:CDS |
| ATGTTCTAGCTCTTGCCATT+GGG | 0.417081 | 5.4:+17909263 | None:intergenic |
| CTCTCTTCAGTGACTGGCAG+TGG | 0.424103 | 5.4:-17906604 | MS.gene070101:CDS |
| GTTCTCTTGTTGTTCGCTGT+TGG | 0.429758 | 5.4:+17906720 | None:intergenic |
| AGGGTTCTAAGAAACCTTAT+AGG | 0.432493 | 5.4:-17908658 | MS.gene070101:intron |
| CTCAGTCTCTCTTCAGTGAC+TGG | 0.441726 | 5.4:-17906610 | MS.gene070101:CDS |
| CCAGCTAGGTAGTTTGAAAC+AGG | 0.443147 | 5.4:-17906645 | MS.gene070101:CDS |
| CTTGGTGCTGGTGGTTCTAG+TGG | 0.451681 | 5.4:-17908824 | MS.gene070101:CDS |
| ACACTTCCTTTGCATACAAA+TGG | 0.453684 | 5.4:-17908752 | MS.gene070101:CDS |
| CGGTCACAGTACTTAGAATC+AGG | 0.455848 | 5.4:+17908962 | None:intergenic |
| GGTTATGATTTCACTTCAGA+TGG | 0.470541 | 5.4:-17906830 | MS.gene070101:CDS |
| CAAACACTGTTTCAGAATCA+AGG | 0.474671 | 5.4:-17906775 | MS.gene070101:CDS |
| ATCTTCAAGTATCTCAAAGC+TGG | 0.478992 | 5.4:-17909231 | MS.gene070101:CDS |
| CGAATAGGTAAAAGGAGGTC+AGG | 0.485852 | 5.4:+17909195 | None:intergenic |
| GCCGTTAAAGACAATGTCCT+TGG | 0.486308 | 5.4:+17906667 | None:intergenic |
| TTGGTGTTAAAATCCTTGCT+TGG | 0.489894 | 5.4:+17906545 | None:intergenic |
| ATCAAGGAATTGTTCTTCCA+TGG | 0.491166 | 5.4:-17906759 | MS.gene070101:CDS |
| ATCAACATTGACATCTGGAT+TGG | 0.498766 | 5.4:+17906526 | None:intergenic |
| AACCTCTTACAGAAGGATCT+AGG | 0.500686 | 5.4:-17906869 | MS.gene070101:CDS |
| CTAGGAACTGTGAAGTATCA+AGG | 0.513671 | 5.4:-17906851 | MS.gene070101:CDS |
| ATTCCACAGGCTTTCTTGAA+CGG | 0.519412 | 5.4:+17908918 | None:intergenic |
| CCCTGAAGAGGAAGAAGCAT+AGG | 0.524973 | 5.4:+17908677 | None:intergenic |
| CCTGTTTCAAACTACCTAGC+TGG | 0.525039 | 5.4:+17906645 | None:intergenic |
| GCGTCGAGGTTAAACAGCTC+AGG | 0.529759 | 5.4:+17906698 | None:intergenic |
| ATTGTCTTTAACGGCCAGCT+AGG | 0.531339 | 5.4:-17906659 | MS.gene070101:CDS |
| ACTTCACAGCAACTTGGTGC+TGG | 0.533655 | 5.4:-17908836 | MS.gene070101:CDS |
| CATACAAATGGTACTCGTGA+AGG | 0.534280 | 5.4:-17908740 | MS.gene070101:CDS |
| ATTTCACTTCAGATGGGATG+TGG | 0.539855 | 5.4:-17906823 | MS.gene070101:CDS |
| TCTGTTCTTCTACACCTACC+TGG | 0.541473 | 5.4:+17909019 | None:intergenic |
| CGAGTACCATTTGTATGCAA+AGG | 0.542113 | 5.4:+17908746 | None:intergenic |
| TCACAGCAACTTGGTGCTGG+TGG | 0.545124 | 5.4:-17908833 | MS.gene070101:CDS |
| TAATAGGTTTGGACTGAACT+CGG | 0.548879 | 5.4:-17906906 | MS.gene070101:intron |
| CCTATACTCCATTGCAGAGG+AGG | 0.551750 | 5.4:+17906568 | None:intergenic |
| TGGGAACACCATGCCCCACA+TGG | 0.552810 | 5.4:-17908702 | MS.gene070101:CDS |
| AGTACTACTTCACAGCAACT+TGG | 0.553505 | 5.4:-17908842 | MS.gene070101:CDS |
| CATAGGGTCCATGTGGGGCA+TGG | 0.558053 | 5.4:+17908694 | None:intergenic |
| AGATTTAGCCTCCTCTGCAA+TGG | 0.559132 | 5.4:-17906576 | MS.gene070101:CDS |
| TTCAACAACCGCCGTTGATG+TGG | 0.565403 | 5.4:-17909314 | MS.gene070101:CDS |
| TGCCATTGGGAGACTGTGAA+CGG | 0.571539 | 5.4:+17909276 | None:intergenic |
| GTTATGATTTCACTTCAGAT+GGG | 0.573421 | 5.4:-17906829 | MS.gene070101:CDS |
| TGGACTGAACTCGGAAGCAG+AGG | 0.606816 | 5.4:-17906897 | MS.gene070101:CDS |
| CCTTGGATCTTGCAGCGTCG+AGG | 0.608156 | 5.4:+17906684 | None:intergenic |
| GAAGAAGAAGAAGATTCCAC+AGG | 0.609396 | 5.4:+17908905 | None:intergenic |
| CACCGTTCACAGTCTCCCAA+TGG | 0.611493 | 5.4:-17909278 | MS.gene070101:CDS |
| CCTCGACGCTGCAAGATCCA+AGG | 0.611618 | 5.4:-17906684 | MS.gene070101:CDS |
| GGAGAACAACCTCTTACAGA+AGG | 0.617644 | 5.4:-17906876 | MS.gene070101:CDS |
| ACTGTGAACGGTGGATGAGT+TGG | 0.621139 | 5.4:+17909288 | None:intergenic |
| GGTAGGTGTAGAAGAACAGA+TGG | 0.627953 | 5.4:-17909016 | MS.gene070101:CDS |
| GGTTTCTTAGAACCCTGAAG+AGG | 0.629209 | 5.4:+17908665 | None:intergenic |
| CCTGAAGAGGAAGAAGCATA+GGG | 0.630158 | 5.4:+17908678 | None:intergenic |
| GTCACTGAAGAGAGACTGAG+AGG | 0.630803 | 5.4:+17906613 | None:intergenic |
| AAGAAGCATAGGGTCCATGT+GGG | 0.631241 | 5.4:+17908688 | None:intergenic |
| GAAGAAGCATAGGGTCCATG+TGG | 0.633928 | 5.4:+17908687 | None:intergenic |
| TGAGTTGGTGACCACATCAA+CGG | 0.634344 | 5.4:+17909303 | None:intergenic |
| GAAGTTGTAGTTGTCAACCA+TGG | 0.647831 | 5.4:+17906742 | None:intergenic |
| TTACCGTTCAAGAAAGCCTG+TGG | 0.651222 | 5.4:-17908921 | MS.gene070101:CDS |
| AATGGAGTATAGGCCAAGCA+AGG | 0.658290 | 5.4:-17906558 | MS.gene070101:CDS |
| AAATTGACCCAGAACCAGGT+AGG | 0.671324 | 5.4:-17909033 | MS.gene070101:CDS |
| TGGCCTATACTCCATTGCAG+AGG | 0.676725 | 5.4:+17906565 | None:intergenic |
| ATAGGTAAAAGGAGGTCAGG+AGG | 0.695933 | 5.4:+17909198 | None:intergenic |
| AACGACGTCGAATCATATGA+CGG | 0.698475 | 5.4:+17908942 | None:intergenic |
| AGAAGCATAGGGTCCATGTG+GGG | 0.720767 | 5.4:+17908689 | None:intergenic |
| CATTGGGAGACTGTGAACGG+TGG | 0.744499 | 5.4:+17909279 | None:intergenic |
| GTTGGTGACCACATCAACGG+CGG | 0.749963 | 5.4:+17909306 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGATTTTACTTTTTATA+AGG | - | chr5.4:17908663-17908682 | MS.gene070101:CDS | 10.0% |
| !! | AAAAAAGAAAAAAAGAGAAA+TGG | - | chr5.4:17908598-17908617 | MS.gene070101:intron | 15.0% |
| !! | CAAATAGATATAAAATGAAA+TGG | + | chr5.4:17908268-17908287 | None:intergenic | 15.0% |
| !!! | ATACTTTATTTTATTCAACT+TGG | - | chr5.4:17907695-17907714 | MS.gene070101:intron | 15.0% |
| !!! | CATTTCATTTTATATCTATT+TGG | - | chr5.4:17908266-17908285 | MS.gene070101:intron | 15.0% |
| !!! | GGATATTAATATTTTTATGA+AGG | - | chr5.4:17908712-17908731 | MS.gene070101:CDS | 15.0% |
| !!! | GTTTATTCTTTACTTTTAAA+TGG | - | chr5.4:17908387-17908406 | MS.gene070101:intron | 15.0% |
| !!! | TATTAATATTTTTATGAAGG+TGG | - | chr5.4:17908715-17908734 | MS.gene070101:CDS | 15.0% |
| !!! | TGATATGATTTTTTAATTCT+AGG | - | chr5.4:17908289-17908308 | MS.gene070101:intron | 15.0% |
| !!! | TTTTATATCTTTATGTTAGA+TGG | - | chr5.4:17907522-17907541 | MS.gene070101:intron | 15.0% |
| !! | AAAAAAGAAACATACCTATA+AGG | + | chr5.4:17907203-17907222 | None:intergenic | 20.0% |
| !! | ATCAAAATAGAGACAAAATA+AGG | + | chr5.4:17906732-17906751 | None:intergenic | 20.0% |
| !! | TGCAGAAATAATTACTTAAT+CGG | - | chr5.4:17907738-17907757 | MS.gene070101:intron | 20.0% |
| !!! | ACTTTATATTGTTTTGACAA+AGG | - | chr5.4:17907669-17907688 | MS.gene070101:intron | 20.0% |
| !!! | ACTTTTTATAAGGAATTTGT+AGG | - | chr5.4:17908673-17908692 | MS.gene070101:CDS | 20.0% |
| !!! | TGTTTCTTTTGTTTTCAATA+AGG | - | chr5.4:17907233-17907252 | MS.gene070101:intron | 20.0% |
| !!! | TTAAGTATTTTAGAAGTTGT+TGG | - | chr5.4:17908850-17908869 | MS.gene070101:CDS | 20.0% |
| ! | AATAATTACTTAATCGGGTT+TGG | - | chr5.4:17907744-17907763 | MS.gene070101:intron | 25.0% |
| ! | ATCCAATTGTGTAAACAAAA+AGG | + | chr5.4:17907503-17907522 | None:intergenic | 25.0% |
| ! | ATCGAGTAAATAATGTGAAA+AGG | + | chr5.4:17907872-17907891 | None:intergenic | 25.0% |
| ! | ATTTCAAATGACCATCAAAA+AGG | + | chr5.4:17907800-17907819 | None:intergenic | 25.0% |
| ! | GCAGAAATAATTACTTAATC+GGG | - | chr5.4:17907739-17907758 | MS.gene070101:intron | 25.0% |
| ! | TAATGATTCAACTCAATTCA+TGG | - | chr5.4:17908769-17908788 | MS.gene070101:CDS | 25.0% |
| ! | TGATAGAGTTAAAGCAATTA+AGG | - | chr5.4:17908021-17908040 | MS.gene070101:intron | 25.0% |
| ! | TTAAGACTAAAGACAAATGT+CGG | + | chr5.4:17908074-17908093 | None:intergenic | 25.0% |
| ! | TTGATAAGATTGGAAATCAA+GGG | - | chr5.4:17907943-17907962 | MS.gene070101:intron | 25.0% |
| ! | TTTATGTTAGATGGAAAACA+TGG | - | chr5.4:17907531-17907550 | MS.gene070101:intron | 25.0% |
| ! | TTTGATAAGATTGGAAATCA+AGG | - | chr5.4:17907942-17907961 | MS.gene070101:intron | 25.0% |
| !! | AAGGTTTAAGTTTCAATCTT+GGG | - | chr5.4:17907123-17907142 | MS.gene070101:intron | 25.0% |
| !! | ATGTTTGTGTATTTGTGTTT+TGG | - | chr5.4:17907402-17907421 | MS.gene070101:intron | 25.0% |
| !! | TGTTTGTGTATTTGTGTTTT+GGG | - | chr5.4:17907403-17907422 | MS.gene070101:intron | 25.0% |
| !!! | AATGGATTAAACATTATAGC+AGG | - | chr5.4:17908616-17908635 | MS.gene070101:intron | 25.0% |
| !!! | TAGTTTTTTTTTCCTTTTCC+TGG | - | chr5.4:17908486-17908505 | MS.gene070101:intron | 25.0% |
| !!! | TGAATTGAGTTGAATCATTA+AGG | + | chr5.4:17908769-17908788 | None:intergenic | 25.0% |
| !!! | TTCCTTTTTGTTTACACAAT+TGG | - | chr5.4:17907498-17907517 | MS.gene070101:intron | 25.0% |
| !!! | TTTGTGATTTTTGTTTCAGT+GGG | - | chr5.4:17906774-17906793 | MS.gene070101:CDS | 25.0% |
| !!! | TTTTGTGATTTTTGTTTCAG+TGG | - | chr5.4:17906773-17906792 | MS.gene070101:CDS | 25.0% |
| AAATTGCAAAAGACTACATG+TGG | + | chr5.4:17908825-17908844 | None:intergenic | 30.0% | |
| AACACACTCAATAATAGGTT+TGG | - | chr5.4:17908927-17908946 | MS.gene070101:CDS | 30.0% | |
| AACTGAACACACTCAATAAT+AGG | - | chr5.4:17908922-17908941 | MS.gene070101:CDS | 30.0% | |
| AAGTTACATAACATGTGATG+TGG | - | chr5.4:17907567-17907586 | MS.gene070101:intron | 30.0% | |
| AGTTGAATCATTAAGGCTTA+AGG | + | chr5.4:17908762-17908781 | None:intergenic | 30.0% | |
| ATAAGGAAGATTAACGTTGT+TGG | + | chr5.4:17906715-17906734 | None:intergenic | 30.0% | |
| ATTATGGGATAACATGTTGA+AGG | - | chr5.4:17908228-17908247 | MS.gene070101:intron | 30.0% | |
| ATTGGAAATCAAGGGAATTA+TGG | - | chr5.4:17907951-17907970 | MS.gene070101:intron | 30.0% | |
| GATAACATGTTGAAGGAATT+TGG | - | chr5.4:17908235-17908254 | MS.gene070101:intron | 30.0% | |
| GTTATGATTTCACTTCAGAT+GGG | - | chr5.4:17909015-17909034 | MS.gene070101:CDS | 30.0% | |
| TAACACTTCACAAGAAATCA+TGG | + | chr5.4:17907466-17907485 | None:intergenic | 30.0% | |
| TAAGGAAGATTAACGTTGTT+GGG | + | chr5.4:17906714-17906733 | None:intergenic | 30.0% | |
| TAGATGTGAGTTAACTAAGA+GGG | - | chr5.4:17907914-17907933 | MS.gene070101:intron | 30.0% | |
| TGTCATTGATACTATGTAGA+TGG | - | chr5.4:17908524-17908543 | MS.gene070101:intron | 30.0% | |
| TTAGATGTGAGTTAACTAAG+AGG | - | chr5.4:17907913-17907932 | MS.gene070101:intron | 30.0% | |
| ! | AATTGAAGACTTTTCCGAAT+AGG | + | chr5.4:17906667-17906686 | None:intergenic | 30.0% |
| ! | ACTTGATGATTATCCAGAAA+GGG | - | chr5.4:17908183-17908202 | MS.gene070101:intron | 30.0% |
| ! | GAAGGTTTAAGTTTCAATCT+TGG | - | chr5.4:17907122-17907141 | MS.gene070101:intron | 30.0% |
| ! | GTTTGTGTATTTGTGTTTTG+GGG | - | chr5.4:17907404-17907423 | MS.gene070101:intron | 30.0% |
| ! | TACTTGATGATTATCCAGAA+AGG | - | chr5.4:17908182-17908201 | MS.gene070101:intron | 30.0% |
| ! | TTTTGTATAACCCTCTTGTT+CGG | - | chr5.4:17907269-17907288 | MS.gene070101:intron | 30.0% |
| !! | AAATCATGACTTGGTATTCT+GGG | - | chr5.4:17907816-17907835 | MS.gene070101:intron | 30.0% |
| !! | TTGTTTCAGTGGGTTATTAT+GGG | - | chr5.4:17906784-17906803 | MS.gene070101:CDS | 30.0% |
| !! | TTTGTTTCAGTGGGTTATTA+TGG | - | chr5.4:17906783-17906802 | MS.gene070101:CDS | 30.0% |
| AAAAAAATTGACCCAGAACC+AGG | - | chr5.4:17906807-17906826 | MS.gene070101:CDS | 35.0% | |
| ACACTTCCTTTGCATACAAA+TGG | - | chr5.4:17907092-17907111 | MS.gene070101:intron | 35.0% | |
| AGATGACGACATCTAATTGA+TGG | + | chr5.4:17908315-17908334 | None:intergenic | 35.0% | |
| AGGGCATGATTTGATAAGAT+TGG | - | chr5.4:17907933-17907952 | MS.gene070101:intron | 35.0% | |
| AGTCAAACAAGAATGCAAGT+AGG | + | chr5.4:17908367-17908386 | None:intergenic | 35.0% | |
| ATCAACATTGACATCTGGAT+TGG | + | chr5.4:17909321-17909340 | None:intergenic | 35.0% | |
| ATCAAGGAATTGTTCTTCCA+TGG | - | chr5.4:17909085-17909104 | MS.gene070101:intron | 35.0% | |
| ATCTTCAAGTATCTCAAAGC+TGG | - | chr5.4:17906613-17906632 | MS.gene070101:CDS | 35.0% | |
| ATGAAATGAACATGCTGTAG+TGG | - | chr5.4:17908549-17908568 | MS.gene070101:intron | 35.0% | |
| CAAAAAATGGAGATGTGCTA+GGG | - | chr5.4:17906851-17906870 | MS.gene070101:CDS | 35.0% | |
| CAAACACTGTTTCAGAATCA+AGG | - | chr5.4:17909069-17909088 | MS.gene070101:intron | 35.0% | |
| CACATTATTTACTCGATACC+TGG | - | chr5.4:17907875-17907894 | MS.gene070101:intron | 35.0% | |
| GAAGAACAGATGGCAAAAAA+TGG | - | chr5.4:17906838-17906857 | MS.gene070101:CDS | 35.0% | |
| GAGTTAAAGCAATTAAGGAG+AGG | - | chr5.4:17908026-17908045 | MS.gene070101:intron | 35.0% | |
| GGTTATGATTTCACTTCAGA+TGG | - | chr5.4:17909014-17909033 | MS.gene070101:CDS | 35.0% | |
| GTGTTCAGTTAACATCATGA+TGG | + | chr5.4:17908912-17908931 | None:intergenic | 35.0% | |
| TAAAAAAGCGAACAATGACC+AGG | + | chr5.4:17907896-17907915 | None:intergenic | 35.0% | |
| TAAGGAATTTGTAGGATCTG+AGG | - | chr5.4:17908681-17908700 | MS.gene070101:CDS | 35.0% | |
| TAATAGGTTTGGACTGAACT+CGG | - | chr5.4:17908938-17908957 | MS.gene070101:CDS | 35.0% | |
| TCAATGACAATGTCCATTGA+TGG | + | chr5.4:17908513-17908532 | None:intergenic | 35.0% | |
| TCCAAGGACATTGTCTTTAA+CGG | - | chr5.4:17909176-17909195 | MS.gene070101:CDS | 35.0% | |
| TGAAATGAACATGCTGTAGT+GGG | - | chr5.4:17908550-17908569 | MS.gene070101:intron | 35.0% | |
| TTTGTATAACCCTCTTGTTC+GGG | - | chr5.4:17907270-17907289 | MS.gene070101:intron | 35.0% | |
| ! | GACTTTTCCGAATAGGTAAA+AGG | + | chr5.4:17906660-17906679 | None:intergenic | 35.0% |
| ! | GGATTGAATTGCCTTTTTGA+TGG | - | chr5.4:17907786-17907805 | MS.gene070101:intron | 35.0% |
| ! | GGTCATTTGAAATCATGACT+TGG | - | chr5.4:17907807-17907826 | MS.gene070101:intron | 35.0% |
| ! | TAAAGACAAATGTCGGTTAG+TGG | + | chr5.4:17908067-17908086 | None:intergenic | 35.0% |
| ! | TTATAGCAGGAGTTGTGTTT+TGG | - | chr5.4:17908629-17908648 | MS.gene070101:intron | 35.0% |
| ! | TTTTCCGAATAGGTAAAAGG+AGG | + | chr5.4:17906657-17906676 | None:intergenic | 35.0% |
| !! | AGGGTTCTAAGAAACCTTAT+AGG | - | chr5.4:17907186-17907205 | MS.gene070101:intron | 35.0% |
| !! | ATAGCTTTGAGCTGGTATTA+TGG | - | chr5.4:17908212-17908231 | MS.gene070101:intron | 35.0% |
| !! | GAAATCATGACTTGGTATTC+TGG | - | chr5.4:17907815-17907834 | MS.gene070101:intron | 35.0% |
| !! | TAGCTTTGAGCTGGTATTAT+GGG | - | chr5.4:17908213-17908232 | MS.gene070101:intron | 35.0% |
| !! | TTGGTGTTAAAATCCTTGCT+TGG | + | chr5.4:17909302-17909321 | None:intergenic | 35.0% |
| AACCTCTTACAGAAGGATCT+AGG | - | chr5.4:17908975-17908994 | MS.gene070101:CDS | 40.0% | |
| AACGACGTCGAATCATATGA+CGG | + | chr5.4:17906905-17906924 | None:intergenic | 40.0% | |
| AATGGAACGCATTGTAGTCT+TGG | - | chr5.4:17908405-17908424 | MS.gene070101:intron | 40.0% | |
| AGTACTACTTCACAGCAACT+TGG | - | chr5.4:17907002-17907021 | MS.gene070101:intron | 40.0% | |
| ATCCTTATCATGTGTGTGTG+GGG | - | chr5.4:17907590-17907609 | MS.gene070101:intron | 40.0% | |
| ATTCCACAGGCTTTCTTGAA+CGG | + | chr5.4:17906929-17906948 | None:intergenic | 40.0% | |
| ATTTCACTTCAGATGGGATG+TGG | - | chr5.4:17909021-17909040 | MS.gene070101:CDS | 40.0% | |
| CAAACAAGAATGCAAGTAGG+AGG | + | chr5.4:17908364-17908383 | None:intergenic | 40.0% | |
| CAACTCAATTCATGGCTACA+TGG | - | chr5.4:17908777-17908796 | MS.gene070101:CDS | 40.0% | |
| CAAGCCTAACTCCAAAACTA+TGG | + | chr5.4:17907648-17907667 | None:intergenic | 40.0% | |
| CATACAAATGGTACTCGTGA+AGG | - | chr5.4:17907104-17907123 | MS.gene070101:intron | 40.0% | |
| CGAGTACCATTTGTATGCAA+AGG | + | chr5.4:17907101-17907120 | None:intergenic | 40.0% | |
| CTGGATAATCATCAAGTAGC+AGG | + | chr5.4:17908180-17908199 | None:intergenic | 40.0% | |
| GAAGAAGAAGAAGATTCCAC+AGG | + | chr5.4:17906942-17906961 | None:intergenic | 40.0% | |
| GAAGTTGTAGTTGTCAACCA+TGG | + | chr5.4:17909105-17909124 | None:intergenic | 40.0% | |
| GACCTTAGTAATCCAGAGTT+CGG | - | chr5.4:17907298-17907317 | MS.gene070101:intron | 40.0% | |
| GATCCTTATCATGTGTGTGT+GGG | - | chr5.4:17907589-17907608 | MS.gene070101:intron | 40.0% | |
| GCAAAAAATGGAGATGTGCT+AGG | - | chr5.4:17906850-17906869 | MS.gene070101:CDS | 40.0% | |
| GTGTTCAATGCGATCTAACA+AGG | - | chr5.4:17908442-17908461 | MS.gene070101:intron | 40.0% | |
| GTTAGATGCTAGTTAGACGT+TGG | + | chr5.4:17908152-17908171 | None:intergenic | 40.0% | |
| TACTTAATCGGGTTTGGCAT+TGG | - | chr5.4:17907750-17907769 | MS.gene070101:intron | 40.0% | |
| TGATGATTATCCAGAAAGGG+TGG | - | chr5.4:17908186-17908205 | MS.gene070101:intron | 40.0% | |
| TTCCTAGATCCTTCTGTAAG+AGG | + | chr5.4:17908980-17908999 | None:intergenic | 40.0% | |
| TTGTATAACCCTCTTGTTCG+GGG | - | chr5.4:17907271-17907290 | MS.gene070101:intron | 40.0% | |
| ! | AAGTCATCTGGCCATAGTTT+TGG | - | chr5.4:17907634-17907653 | MS.gene070101:intron | 40.0% |
| ! | CTAGGAACTGTGAAGTATCA+AGG | - | chr5.4:17908993-17909012 | MS.gene070101:CDS | 40.0% |
| ! | CTGACCTCCTTTTACCTATT+CGG | - | chr5.4:17906650-17906669 | MS.gene070101:CDS | 40.0% |
| ! | GATCCTAATGTTTAAGACCG+AGG | + | chr5.4:17908803-17908822 | None:intergenic | 40.0% |
| ! | GGTTAGTTATGACCAAACTC+CGG | + | chr5.4:17908131-17908150 | None:intergenic | 40.0% |
| ! | GTAGGATCTGAGGTATGAAA+TGG | - | chr5.4:17908691-17908710 | MS.gene070101:CDS | 40.0% |
| !! | ATGTTCTAGCTCTTGCCATT+GGG | + | chr5.4:17906584-17906603 | None:intergenic | 40.0% |
| !! | TGTCTTTAGTCTTAACCCTC+CGG | - | chr5.4:17908079-17908098 | MS.gene070101:intron | 40.0% |
| !!! | GGCATTGGTAAGAGATTTTG+TGG | - | chr5.4:17907765-17907784 | MS.gene070101:intron | 40.0% |
| AAATTGACCCAGAACCAGGT+AGG | - | chr5.4:17906811-17906830 | MS.gene070101:CDS | 45.0% | |
| AAGCTATGAACCACCCTTTC+TGG | + | chr5.4:17908199-17908218 | None:intergenic | 45.0% | |
| AATGGAGTATAGGCCAAGCA+AGG | - | chr5.4:17909286-17909305 | MS.gene070101:CDS | 45.0% | |
| AATTCATGGCTACATGGCCT+CGG | - | chr5.4:17908783-17908802 | MS.gene070101:CDS | 45.0% | |
| AGAGTAAGGTGCAAGTCATC+TGG | - | chr5.4:17907622-17907641 | MS.gene070101:intron | 45.0% | |
| AGATTTAGCCTCCTCTGCAA+TGG | - | chr5.4:17909268-17909287 | MS.gene070101:CDS | 45.0% | |
| ATAGGTAAAAGGAGGTCAGG+AGG | + | chr5.4:17906649-17906668 | None:intergenic | 45.0% | |
| ATTGTCTTTAACGGCCAGCT+AGG | - | chr5.4:17909185-17909204 | MS.gene070101:CDS | 45.0% | |
| CCTATGCTTCTTCCTCTTCA+GGG | - | chr5.4:17907167-17907186 | MS.gene070101:intron | 45.0% | |
| CCTGTTTCAAACTACCTAGC+TGG | + | chr5.4:17909202-17909221 | None:intergenic | 45.0% | |
| CGAATAGGTAAAAGGAGGTC+AGG | + | chr5.4:17906652-17906671 | None:intergenic | 45.0% | |
| CGGTCACAGTACTTAGAATC+AGG | + | chr5.4:17906885-17906904 | None:intergenic | 45.0% | |
| GCCGTTAAAGACAATGTCCT+TGG | + | chr5.4:17909180-17909199 | None:intergenic | 45.0% | |
| GGAGAACAACCTCTTACAGA+AGG | - | chr5.4:17908968-17908987 | MS.gene070101:CDS | 45.0% | |
| GGATCCTTATCATGTGTGTG+TGG | - | chr5.4:17907588-17907607 | MS.gene070101:intron | 45.0% | |
| GGTAGGTGTAGAAGAACAGA+TGG | - | chr5.4:17906828-17906847 | MS.gene070101:CDS | 45.0% | |
| GGTTTCTTAGAACCCTGAAG+AGG | + | chr5.4:17907182-17907201 | None:intergenic | 45.0% | |
| GTTGTTGGGTACTTACGAGA+TGG | + | chr5.4:17906700-17906719 | None:intergenic | 45.0% | |
| TCTGTTCTTCTACACCTACC+TGG | + | chr5.4:17906828-17906847 | None:intergenic | 45.0% | |
| TGGCCTCGGTCTTAAACATT+AGG | - | chr5.4:17908797-17908816 | MS.gene070101:CDS | 45.0% | |
| TGGGGTGAGATTTGAGAGTA+AGG | - | chr5.4:17907608-17907627 | MS.gene070101:intron | 45.0% | |
| TGTATAACCCTCTTGTTCGG+GGG | - | chr5.4:17907272-17907291 | MS.gene070101:intron | 45.0% | |
| TTACCGTTCAAGAAAGCCTG+TGG | - | chr5.4:17906923-17906942 | MS.gene070101:intron | 45.0% | |
| TTAGTAATCCAGAGTTCGGC+CGG | - | chr5.4:17907302-17907321 | MS.gene070101:intron | 45.0% | |
| TTTCCTCAAAACCCCACACA+CGG | + | chr5.4:17907437-17907456 | None:intergenic | 45.0% | |
| ! | AAGAAGCATAGGGTCCATGT+GGG | + | chr5.4:17907159-17907178 | None:intergenic | 45.0% |
| ! | ACAATGTCCATTGATGGACC+AGG | + | chr5.4:17908507-17908526 | None:intergenic | 45.0% |
| ! | CCAGCTAGGTAGTTTGAAAC+AGG | - | chr5.4:17909199-17909218 | MS.gene070101:CDS | 45.0% |
| ! | CCTGAAGAGGAAGAAGCATA+GGG | + | chr5.4:17907169-17907188 | None:intergenic | 45.0% |
| ! | TCCATTGATGGACCAGGAAA+AGG | + | chr5.4:17908501-17908520 | None:intergenic | 45.0% |
| ! | TCCTTTTCCTGGTCCATCAA+TGG | - | chr5.4:17908497-17908516 | MS.gene070101:intron | 45.0% |
| ! | TTCTACACCTACCTGGTTCT+GGG | + | chr5.4:17906821-17906840 | None:intergenic | 45.0% |
| !! | GATGTTCTAGCTCTTGCCAT+TGG | + | chr5.4:17906585-17906604 | None:intergenic | 45.0% |
| !! | GTTCTCTTGTTGTTCGCTGT+TGG | + | chr5.4:17909127-17909146 | None:intergenic | 45.0% |
| !! | TGAGTTGGTGACCACATCAA+CGG | + | chr5.4:17906544-17906563 | None:intergenic | 45.0% |
| !!! | CTGGCCATAGTTTTGGAGTT+AGG | - | chr5.4:17907641-17907660 | MS.gene070101:intron | 45.0% |
| ACTACCAGAGCCTCTTCTCT+TGG | + | chr5.4:17908108-17908127 | None:intergenic | 50.0% | |
| ACTGTGAACGGTGGATGAGT+TGG | + | chr5.4:17906559-17906578 | None:intergenic | 50.0% | |
| CACCCCACACACACATGATA+AGG | + | chr5.4:17907595-17907614 | None:intergenic | 50.0% | |
| CCCTATGCTTCTTCCTCTTC+AGG | - | chr5.4:17907166-17907185 | MS.gene070101:intron | 50.0% | |
| CCTATACTCCATTGCAGAGG+AGG | + | chr5.4:17909279-17909298 | None:intergenic | 50.0% | |
| CCTCCTCTGCAATGGAGTAT+AGG | - | chr5.4:17909276-17909295 | MS.gene070101:CDS | 50.0% | |
| CTACCAGAGCCTCTTCTCTT+GGG | + | chr5.4:17908107-17908126 | None:intergenic | 50.0% | |
| CTCAGTCTCTCTTCAGTGAC+TGG | - | chr5.4:17909234-17909253 | MS.gene070101:CDS | 50.0% | |
| CTTCTACACCTACCTGGTTC+TGG | + | chr5.4:17906822-17906841 | None:intergenic | 50.0% | |
| GCCAGACTTTACTTACCTCC+CGG | + | chr5.4:17907324-17907343 | None:intergenic | 50.0% | |
| GGCCGAACTCTGGATTACTA+AGG | + | chr5.4:17907303-17907322 | None:intergenic | 50.0% | |
| GTCACTGAAGAGAGACTGAG+AGG | + | chr5.4:17909234-17909253 | None:intergenic | 50.0% | |
| TAGTAATCCAGAGTTCGGCC+GGG | - | chr5.4:17907303-17907322 | MS.gene070101:intron | 50.0% | |
| TGCCATTGGGAGACTGTGAA+CGG | + | chr5.4:17906571-17906590 | None:intergenic | 50.0% | |
| TGGCCTATACTCCATTGCAG+AGG | + | chr5.4:17909282-17909301 | None:intergenic | 50.0% | |
| TTCAACAACCGCCGTTGATG+TGG | - | chr5.4:17906530-17906549 | MS.gene070101:CDS | 50.0% | |
| ! | AGAAGCATAGGGTCCATGTG+GGG | + | chr5.4:17907158-17907177 | None:intergenic | 50.0% |
| ! | CCCTGAAGAGGAAGAAGCAT+AGG | + | chr5.4:17907170-17907189 | None:intergenic | 50.0% |
| ! | GAAGAAGCATAGGGTCCATG+TGG | + | chr5.4:17907160-17907179 | None:intergenic | 50.0% |
| !! | ACTTCACAGCAACTTGGTGC+TGG | - | chr5.4:17907008-17907027 | MS.gene070101:intron | 50.0% |
| !! | GGTGGTTCATAGCTTTGAGC+TGG | - | chr5.4:17908204-17908223 | MS.gene070101:intron | 50.0% |
| ATAACCCTCTTGTTCGGGGG+AGG | - | chr5.4:17907275-17907294 | MS.gene070101:intron | 55.0% | |
| CACCGTTCACAGTCTCCCAA+TGG | - | chr5.4:17906566-17906585 | MS.gene070101:CDS | 55.0% | |
| CATTGGGAGACTGTGAACGG+TGG | + | chr5.4:17906568-17906587 | None:intergenic | 55.0% | |
| CTCTCTTCAGTGACTGGCAG+TGG | - | chr5.4:17909240-17909259 | MS.gene070101:CDS | 55.0% | |
| CTCTTCTCTTGGGAACCGGA+GGG | + | chr5.4:17908097-17908116 | None:intergenic | 55.0% | |
| GAGCCTCTTCTCTTGGGAAC+CGG | + | chr5.4:17908101-17908120 | None:intergenic | 55.0% | |
| GCCGGGAGGTAAGTAAAGTC+TGG | - | chr5.4:17907320-17907339 | MS.gene070101:intron | 55.0% | |
| GCGTCGAGGTTAAACAGCTC+AGG | + | chr5.4:17909149-17909168 | None:intergenic | 55.0% | |
| GTTCCCAAGAGAAGAGGCTC+TGG | - | chr5.4:17908101-17908120 | MS.gene070101:intron | 55.0% | |
| TAACCCTCTTGTTCGGGGGA+GGG | - | chr5.4:17907276-17907295 | MS.gene070101:intron | 55.0% | |
| TGGACTGAACTCGGAAGCAG+AGG | - | chr5.4:17908947-17908966 | MS.gene070101:CDS | 55.0% | |
| ! | GAGAAGAGGCTCTGGTAGTC+CGG | - | chr5.4:17908109-17908128 | MS.gene070101:intron | 55.0% |
| ! | TTGCCGTGTGTGGGGTTTTG+AGG | - | chr5.4:17907431-17907450 | MS.gene070101:intron | 55.0% |
| !! | CTTGGTGCTGGTGGTTCTAG+TGG | - | chr5.4:17907020-17907039 | MS.gene070101:intron | 55.0% |
| !! | GTTGGTGACCACATCAACGG+CGG | + | chr5.4:17906541-17906560 | None:intergenic | 55.0% |
| !! | TCACAGCAACTTGGTGCTGG+TGG | - | chr5.4:17907011-17907030 | MS.gene070101:intron | 55.0% |
| !! | TGGGGTGTTTTGCCGTGTGT+GGG | - | chr5.4:17907422-17907441 | MS.gene070101:intron | 55.0% |
| !! | TTGGGGTGTTTTGCCGTGTG+TGG | - | chr5.4:17907421-17907440 | MS.gene070101:intron | 55.0% |
| CATAGGGTCCATGTGGGGCA+TGG | + | chr5.4:17907153-17907172 | None:intergenic | 60.0% | |
| CCTCCGGTTCCCAAGAGAAG+AGG | - | chr5.4:17908095-17908114 | MS.gene070101:intron | 60.0% | |
| CCTCGACGCTGCAAGATCCA+AGG | - | chr5.4:17909160-17909179 | MS.gene070101:intron | 60.0% | |
| CCTCTTCTCTTGGGAACCGG+AGG | + | chr5.4:17908098-17908117 | None:intergenic | 60.0% | |
| CCTTGGATCTTGCAGCGTCG+AGG | + | chr5.4:17909163-17909182 | None:intergenic | 60.0% | |
| TAATCCAGAGTTCGGCCGGG+AGG | - | chr5.4:17907306-17907325 | MS.gene070101:intron | 60.0% | |
| TGGGAACACCATGCCCCACA+TGG | - | chr5.4:17907142-17907161 | MS.gene070101:intron | 60.0% | |
| ! | GGCTCTGGTAGTCCGGAGTT+TGG | - | chr5.4:17908116-17908135 | MS.gene070101:intron | 60.0% |
| !! | GGGGTGTTTTGCCGTGTGTG+GGG | - | chr5.4:17907423-17907442 | MS.gene070101:intron | 60.0% |
| AGGTCCCTCCCCCGAACAAG+AGG | + | chr5.4:17907283-17907302 | None:intergenic | 65.0% | |
| CTTACCTCCCGGCCGAACTC+TGG | + | chr5.4:17907313-17907332 | None:intergenic | 65.0% | |
| GGTCCCTCCCCCGAACAAGA+GGG | + | chr5.4:17907282-17907301 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 17906523 | 17909343 | 17906523 | ID=MS.gene070101 |
| chr5.4 | mRNA | 17906523 | 17909343 | 17906523 | ID=MS.gene070101.t1;Parent=MS.gene070101 |
| chr5.4 | exon | 17909163 | 17909343 | 17909163 | ID=MS.gene070101.t1.exon1;Parent=MS.gene070101.t1 |
| chr5.4 | CDS | 17909163 | 17909343 | 17909163 | ID=cds.MS.gene070101.t1;Parent=MS.gene070101.t1 |
| chr5.4 | exon | 17908659 | 17909073 | 17908659 | ID=MS.gene070101.t1.exon2;Parent=MS.gene070101.t1 |
| chr5.4 | CDS | 17908659 | 17909073 | 17908659 | ID=cds.MS.gene070101.t1;Parent=MS.gene070101.t1 |
| chr5.4 | exon | 17906523 | 17906922 | 17906523 | ID=MS.gene070101.t1.exon3;Parent=MS.gene070101.t1 |
| chr5.4 | CDS | 17906523 | 17906922 | 17906523 | ID=cds.MS.gene070101.t1;Parent=MS.gene070101.t1 |
| Gene Sequence |
| Protein sequence |
