AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070117

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070117.t1 MTR_5g027440 95.324 278 12 1 1 277 1 278 0.0 548
MS.gene070117.t1 MTR_6g444980 53.049 164 62 4 10 171 22 172 6.17e-52 174
MS.gene070117.t1 MTR_2g086450 50.802 187 82 4 18 194 38 224 8.62e-51 171
MS.gene070117.t1 MTR_6g032990 50.777 193 85 4 18 204 35 223 8.55e-50 169
MS.gene070117.t1 MTR_7g088070 54.545 143 52 1 25 167 50 179 2.21e-48 162
MS.gene070117.t1 MTR_6g444980 53.595 153 56 4 10 160 22 161 4.79e-48 163
MS.gene070117.t1 MTR_7g088070 55.245 143 55 2 25 167 50 183 3.45e-47 159
MS.gene070117.t1 MTR_4g081710 51.250 160 71 3 15 171 7 162 3.04e-46 158
MS.gene070117.t1 MTR_2g027860 39.200 250 132 5 25 270 49 282 1.22e-44 154
MS.gene070117.t1 MTR_5g041350 50.625 160 73 4 15 171 5 161 1.34e-44 154
MS.gene070117.t1 MTR_2g027800 50.588 170 74 5 7 171 20 184 3.58e-43 149
MS.gene070117.t1 MTR_1g090670 51.923 156 67 4 18 171 37 186 4.51e-43 149
MS.gene070117.t1 MTR_2g027800 48.193 166 70 4 7 171 20 170 9.26e-41 143
MS.gene070117.t1 MTR_7g098250 49.645 141 59 2 25 165 262 390 6.76e-36 134
MS.gene070117.t1 MTR_7g115530 45.399 163 77 3 25 187 218 368 2.18e-35 132
MS.gene070117.t1 MTR_1g080330 46.622 148 67 3 18 165 168 303 7.57e-34 127
MS.gene070117.t1 MTR_1g053835 44.755 143 65 2 25 167 258 386 1.47e-33 127
MS.gene070117.t1 MTR_7g093030 41.497 147 73 4 25 171 212 345 3.62e-30 117
MS.gene070117.t1 MTR_1g080330 47.244 127 55 3 18 144 168 282 3.09e-27 107
MS.gene070117.t1 MTR_7g115530 48.333 120 50 3 25 144 218 325 4.65e-26 104
MS.gene070117.t1 MTR_7g068600 39.860 143 67 3 25 162 13 141 7.12e-25 99.8
MS.gene070117.t1 MTR_7g115530 58.462 65 27 0 25 89 218 282 4.51e-21 90.9
MS.gene070117.t1 MTR_1g053800 34.286 175 91 4 12 178 159 317 2.71e-20 89.0
MS.gene070117.t1 MTR_7g115530 57.812 64 27 0 25 88 218 281 5.46e-20 88.6
MS.gene070117.t1 MTR_7g093030 57.895 57 24 0 25 81 212 268 9.29e-20 87.0
MS.gene070117.t1 MTR_1g053830 55.357 56 25 0 27 82 20 75 7.66e-19 79.7
MS.gene070117.t1 MTR_2g023580 48.387 93 46 1 21 113 51 141 8.50e-19 83.6
MS.gene070117.t1 MTR_1g112370 47.059 102 42 3 1 97 1 95 1.93e-18 84.0
MS.gene070117.t1 MTR_7g069660 62.069 58 22 0 21 78 67 124 2.66e-18 84.0
MS.gene070117.t1 MTR_7g115530 65.385 52 18 0 25 76 218 269 6.04e-18 81.6
MS.gene070117.t1 MTR_0223s0040 56.716 67 29 0 12 78 5 71 9.95e-18 81.3
MS.gene070117.t1 MTR_6g071625 61.667 60 23 0 26 85 203 262 1.77e-17 81.6
MS.gene070117.t1 MTR_8g066310 69.811 53 16 0 26 78 174 226 2.57e-17 80.9
MS.gene070117.t1 MTR_7g115530 62.264 53 20 0 25 77 218 270 3.32e-17 80.1
MS.gene070117.t1 MTR_5g029470 69.811 53 16 0 26 78 220 272 7.98e-17 80.1
MS.gene070117.t1 MTR_1g021520 67.925 53 17 0 26 78 127 179 9.49e-17 79.0
MS.gene070117.t1 MTR_8g086410 51.389 72 28 1 7 78 100 164 1.08e-16 79.7
MS.gene070117.t1 MTR_8g086410 51.389 72 28 1 7 78 98 162 1.12e-16 79.7
MS.gene070117.t1 MTR_2g084230 60.345 58 23 0 21 78 93 150 1.13e-16 78.6
MS.gene070117.t1 MTR_2g084230 60.345 58 23 0 21 78 93 150 1.36e-16 79.3
MS.gene070117.t1 MTR_1g090670 43.590 117 58 4 57 171 1 111 1.95e-16 76.6
MS.gene070117.t1 MTR_3g450310 48.611 72 30 1 7 78 8 72 2.04e-16 76.3
MS.gene070117.t1 MTR_3g064840 67.925 53 17 0 26 78 275 327 2.21e-16 79.0
MS.gene070117.t1 MTR_7g093010 36.420 162 78 6 15 168 200 344 4.21e-16 77.8
MS.gene070117.t1 MTR_2g016220 49.333 75 38 0 4 78 68 142 8.47e-16 77.0
MS.gene070117.t1 MTR_2g016220 49.333 75 38 0 4 78 68 142 8.91e-16 76.6
MS.gene070117.t1 MTR_8g086410 48.611 72 30 1 7 78 100 164 2.13e-15 75.9
MS.gene070117.t1 MTR_2g016220 48.611 72 37 0 4 75 68 139 2.69e-14 72.4
MS.gene070117.t1 MTR_4g121020 58.182 55 22 1 25 79 111 164 5.51e-13 68.9
MS.gene070117.t1 MTR_4g121020 58.182 55 22 1 25 79 215 268 6.65e-13 68.9
MS.gene070117.t1 MTR_4g121020 58.182 55 22 1 25 79 215 268 6.77e-13 68.9
MS.gene070117.t1 MTR_7g089010 56.364 55 23 1 25 79 91 144 5.44e-12 65.1
MS.gene070117.t1 MTR_5g017980 47.222 72 36 1 25 96 193 262 6.30e-12 65.1
MS.gene070117.t1 MTR_2g450070 52.727 55 25 1 25 79 213 266 7.31e-12 65.9
MS.gene070117.t1 MTR_4g113140 54.098 61 26 1 25 85 235 293 7.50e-12 65.5
MS.gene070117.t1 MTR_2g450070 52.727 55 25 1 25 79 213 266 7.63e-12 65.9
MS.gene070117.t1 MTR_1g093080 50.820 61 28 1 25 85 211 269 1.13e-11 64.7
MS.gene070117.t1 MTR_4g064730 54.545 55 24 1 25 79 131 184 1.34e-11 64.3
MS.gene070117.t1 MTR_1g032570 52.727 55 25 1 25 79 131 184 1.36e-11 64.7
MS.gene070117.t1 MTR_1g032570 52.727 55 25 1 25 79 200 253 1.69e-11 64.7
MS.gene070117.t1 MTR_4g086835 54.098 61 26 1 25 85 274 332 1.97e-11 64.3
MS.gene070117.t1 MTR_4g021790 46.154 65 32 2 25 89 168 229 2.52e-11 63.2
MS.gene070117.t1 MTR_1g013170 54.237 59 26 1 21 79 187 244 2.53e-11 63.9
MS.gene070117.t1 MTR_5g041350 60.417 48 19 0 124 171 3 50 7.93e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070117.t1 AT5G45580 51.220 287 118 11 2 274 1 279 1.76e-78 239
MS.gene070117.t1 AT5G45580 52.045 269 108 10 20 274 2 263 1.48e-76 234
MS.gene070117.t1 AT3G24120 53.333 180 80 3 18 194 34 212 3.35e-58 188
MS.gene070117.t1 AT4G13640 50.575 174 84 1 17 188 29 202 1.73e-57 186
MS.gene070117.t1 AT3G24120 52.459 183 80 4 18 194 34 215 6.79e-56 182
MS.gene070117.t1 AT4G13640 49.718 177 84 2 17 188 29 205 2.76e-55 180
MS.gene070117.t1 AT3G04030 48.241 199 82 4 7 193 29 218 1.40e-51 174
MS.gene070117.t1 AT5G18240 48.205 195 88 4 7 193 29 218 4.37e-51 172
MS.gene070117.t1 AT5G18240 48.205 195 88 4 7 193 29 218 4.37e-51 172
MS.gene070117.t1 AT1G79430 41.921 229 99 7 10 217 21 236 9.07e-49 165
MS.gene070117.t1 AT3G04030 47.236 199 83 5 7 193 29 217 1.61e-48 166
MS.gene070117.t1 AT3G12730 47.273 165 69 4 18 173 16 171 9.52e-48 159
MS.gene070117.t1 AT5G18240 47.179 195 88 5 7 193 29 216 1.20e-47 163
MS.gene070117.t1 AT3G04030 46.231 199 80 5 7 193 29 212 1.08e-46 160
MS.gene070117.t1 AT5G18240 46.154 195 86 5 7 193 29 212 4.75e-46 159
MS.gene070117.t1 AT5G18240 46.154 195 86 5 7 193 29 212 4.75e-46 159
MS.gene070117.t1 AT1G69580 48.810 168 81 2 16 178 25 192 1.43e-45 156
MS.gene070117.t1 AT1G69580 47.929 169 82 2 16 178 25 193 6.71e-45 155
MS.gene070117.t1 AT2G01060 54.545 143 54 2 25 167 15 146 1.32e-43 150
MS.gene070117.t1 AT3G13040 46.250 160 76 2 25 181 241 393 1.22e-37 138
MS.gene070117.t1 AT3G13040 46.250 160 76 2 25 181 241 393 1.22e-37 138
MS.gene070117.t1 AT3G13040 46.250 160 76 2 25 181 241 393 1.22e-37 138
MS.gene070117.t1 AT4G28610 45.000 160 76 3 25 184 225 372 1.12e-34 129
MS.gene070117.t1 AT5G45580 41.204 216 106 10 73 274 16 224 1.77e-33 122
MS.gene070117.t1 AT5G06800 45.455 143 65 3 25 167 192 321 4.85e-33 124
MS.gene070117.t1 AT5G06800 44.056 143 72 3 25 167 192 326 1.01e-32 124
MS.gene070117.t1 AT5G29000 44.828 145 67 2 25 167 188 321 2.84e-32 122
MS.gene070117.t1 AT5G29000 44.828 145 67 2 25 167 188 321 2.84e-32 122
MS.gene070117.t1 AT5G29000 44.828 145 67 2 25 167 231 364 4.71e-32 122
MS.gene070117.t1 AT3G04450 44.521 146 66 2 25 167 198 331 5.25e-32 122
MS.gene070117.t1 AT3G04450 44.521 146 66 2 25 167 198 331 5.25e-32 122
MS.gene070117.t1 AT3G04450 44.521 146 66 2 25 167 238 371 6.68e-32 122
MS.gene070117.t1 AT3G04030 46.309 149 61 3 57 193 1 142 9.98e-29 112
MS.gene070117.t1 AT2G20400 40.764 157 82 2 27 183 233 378 1.22e-27 110
MS.gene070117.t1 AT2G20400 40.127 157 82 2 27 183 233 377 5.97e-27 108
MS.gene070117.t1 AT5G18240 42.759 145 66 4 57 193 1 136 2.53e-24 100
MS.gene070117.t1 AT3G04030 43.624 149 59 4 57 193 1 136 5.33e-24 99.0
MS.gene070117.t1 AT2G06020 41.667 132 51 4 3 113 58 184 4.92e-23 96.3
MS.gene070117.t1 AT1G79430 47.009 117 49 3 57 171 1 106 1.30e-22 95.1
MS.gene070117.t1 AT2G01060 48.148 108 45 2 60 167 1 97 5.68e-22 92.0
MS.gene070117.t1 AT3G12730 38.889 126 59 4 57 173 1 117 4.49e-21 88.2
MS.gene070117.t1 AT5G06800 54.688 64 29 0 25 88 192 255 6.97e-20 87.4
MS.gene070117.t1 AT2G42660 69.811 53 16 0 26 78 51 103 3.05e-19 85.1
MS.gene070117.t1 AT2G02060 51.765 85 37 1 1 81 1 85 6.18e-19 84.3
MS.gene070117.t1 AT2G02060 51.765 85 37 1 1 81 1 85 6.18e-19 84.3
MS.gene070117.t1 AT4G04605 55.556 63 28 0 16 78 5 67 9.15e-19 83.2
MS.gene070117.t1 AT5G29000 53.623 69 32 0 25 93 231 299 1.62e-18 84.0
MS.gene070117.t1 AT1G14600 56.000 75 31 1 6 78 2 76 1.98e-18 82.8
MS.gene070117.t1 AT3G04450 56.897 58 25 0 25 82 238 295 4.34e-18 82.8
MS.gene070117.t1 AT2G40260 57.812 64 27 0 15 78 72 135 4.63e-18 83.6
MS.gene070117.t1 AT4G04580 47.500 80 37 1 14 93 3 77 7.25e-18 79.3
MS.gene070117.t1 AT1G32240 69.811 53 16 0 26 78 214 266 4.97e-17 80.5
MS.gene070117.t1 AT1G32240 69.811 53 16 0 26 78 214 266 6.56e-17 80.1
MS.gene070117.t1 AT5G16560 67.925 53 17 0 26 78 220 272 7.93e-17 80.1
MS.gene070117.t1 AT5G42630 66.038 53 18 0 26 78 106 158 9.61e-17 77.4
MS.gene070117.t1 AT2G38300 61.404 57 22 0 22 78 51 107 1.34e-16 79.0
MS.gene070117.t1 AT5G42630 66.038 53 18 0 26 78 106 158 2.32e-16 77.4
MS.gene070117.t1 AT4G17695 66.038 53 18 0 26 78 165 217 4.19e-16 77.4
MS.gene070117.t1 AT4G37180 55.932 59 24 1 27 85 212 268 3.21e-13 69.3
MS.gene070117.t1 AT4G37180 55.932 59 24 1 27 85 219 275 3.22e-13 69.3
MS.gene070117.t1 AT3G25790 39.286 112 51 4 30 128 201 308 4.49e-13 68.9
MS.gene070117.t1 AT3G10760 51.351 74 31 3 6 79 90 158 8.19e-13 67.8
MS.gene070117.t1 AT1G49560 44.330 97 49 2 25 121 192 283 1.59e-12 67.0
MS.gene070117.t1 AT5G05090 56.364 55 23 1 25 79 81 134 2.43e-12 65.9
MS.gene070117.t1 AT4G04555 46.032 63 34 0 16 78 5 67 3.08e-12 62.4
MS.gene070117.t1 AT3G46640 54.545 55 24 1 25 79 144 197 5.08e-12 65.5
MS.gene070117.t1 AT3G46640 54.545 55 24 1 25 79 144 197 5.08e-12 65.5
MS.gene070117.t1 AT5G59570 54.545 55 24 1 25 79 141 194 5.24e-12 65.5
MS.gene070117.t1 AT5G59570 54.545 55 24 1 25 79 141 194 5.24e-12 65.5
MS.gene070117.t1 AT3G46640 54.545 55 24 1 25 79 144 197 5.51e-12 65.5
MS.gene070117.t1 AT5G58080 56.364 55 23 1 25 79 194 247 5.74e-12 66.2
MS.gene070117.t1 AT2G40970 56.364 55 23 1 25 79 105 158 9.09e-12 63.9
MS.gene070117.t1 AT2G03500 54.098 61 26 1 25 85 233 291 2.25e-11 63.9
MS.gene070117.t1 AT3G16857 52.727 55 25 1 25 79 167 220 3.22e-11 63.9
MS.gene070117.t1 AT1G13300 50.820 61 28 1 25 85 181 239 3.51e-11 63.2
MS.gene070117.t1 AT3G16857 52.727 55 25 1 25 79 237 290 3.80e-11 63.5
MS.gene070117.t1 AT3G16857 52.727 55 25 1 25 79 237 290 3.98e-11 63.5
MS.gene070117.t1 AT2G01760 52.727 55 25 1 25 79 135 188 6.08e-11 62.4

Find 68 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAGCATGATTCTTATTA+TGG 0.152516 5.4:+18115886 None:intergenic
TGCCTTAGTGCTTCTCCTAT+TGG 0.203121 5.4:+18116543 None:intergenic
ATTAACCTTAGAACAGATTT+AGG 0.207865 5.4:+18117693 None:intergenic
TAAATCTGTTCTAAGGTTAA+TGG 0.217308 5.4:-18117691 MS.gene070117:CDS
GCCTTAGTGCTTCTCCTATT+GGG 0.237177 5.4:+18116544 None:intergenic
CTAAGGTTAATGGGATTAAA+AGG 0.242641 5.4:-18117681 MS.gene070117:CDS
CTCAGCTTTGTCAAACTTCA+TGG 0.244936 5.4:-18115958 MS.gene070117:CDS
GTCCACCTCAGCCTCGGCTT+CGG 0.273883 5.4:+18118124 None:intergenic
CAGCTAGACTTAAACATTAA+AGG 0.275731 5.4:-18115789 MS.gene070117:CDS
AGAGGCTCAAGGGAAGTATT+TGG 0.284186 5.4:-18116069 MS.gene070117:CDS
TCCACCTCAGCCTCGGCTTC+GGG 0.297458 5.4:+18118125 None:intergenic
TCATTTGAAGAGCCATTTAC+AGG 0.303807 5.4:-18117646 MS.gene070117:intron
AATTTCAGTAACCATTCTTC+AGG 0.305474 5.4:-18116831 MS.gene070117:CDS
AAATCTGTTCTAAGGTTAAT+GGG 0.321195 5.4:-18117690 MS.gene070117:CDS
AGCTGAAATGGAATCAAATA+TGG 0.349100 5.4:-18115739 MS.gene070117:CDS
GGAGGGAGAGGAGGAATTGA+AGG 0.362824 5.4:-18118181 MS.gene070117:CDS
ACTAGGGACAGAAGAAAATA+AGG 0.364063 5.4:-18115844 MS.gene070117:CDS
TAGAAGTTGTTACCTGTAAA+TGG 0.368392 5.4:+18117634 None:intergenic
TAATGCATCAAAAGCTCAAT+TGG 0.371170 5.4:-18115991 MS.gene070117:CDS
AATTGAAGTTCAAAAGAGAT+TGG 0.388648 5.4:-18116517 MS.gene070117:CDS
ATGATGGAAAGTGGAGGGAG+AGG 0.397519 5.4:-18118193 MS.gene070117:CDS
CGACTCCTAAATCTGTTCTA+AGG 0.397762 5.4:-18117698 MS.gene070117:CDS
TCAGGGACTAATACCAACTA+TGG 0.403640 5.4:-18116813 MS.gene070117:CDS
TGCCTTGTCCATCTTGAGAA+AGG 0.418880 5.4:+18116018 None:intergenic
TTCATTATCACCTCCATAGT+TGG 0.436053 5.4:+18116800 None:intergenic
ATCTGTAGATGGAGCTGAAA+TGG 0.439210 5.4:-18115751 MS.gene070117:CDS
TTCAATTATCAAGAAGTACT+AGG 0.442529 5.4:-18115861 MS.gene070117:CDS
GGAGGAATTGAAGGGTATGA+TGG 0.460307 5.4:-18118172 MS.gene070117:CDS
GAACTAAAGCCTCAAGTTGA+AGG 0.464648 5.4:-18115822 MS.gene070117:CDS
GTCGACGCTGTCACAAAGCT+TGG 0.467980 5.4:-18118079 MS.gene070117:CDS
GGGAGAGGTATGATGGAAAG+TGG 0.468132 5.4:-18118202 None:intergenic
AATCAAATATGGTTTCATAT+AGG 0.473600 5.4:-18115728 MS.gene070117:CDS
TAAATTGCAAATGAGAATAG+AGG 0.480939 5.4:-18116087 MS.gene070117:CDS
TGGTATTAGTCCCTGAAGAA+TGG 0.487795 5.4:+18116820 None:intergenic
ACCCGAAGCCGAGGCTGAGG+TGG 0.491348 5.4:-18118126 MS.gene070117:CDS
ATTCACAGAGAAATCCCAAT+AGG 0.498124 5.4:-18116558 MS.gene070117:intron
ATTTCAGTAACCATTCTTCA+GGG 0.498736 5.4:-18116830 MS.gene070117:CDS
AATGAACTTGTATCTGTAGA+TGG 0.501826 5.4:-18115762 MS.gene070117:CDS
GAGACCCGAAGCCGAGGCTG+AGG 0.504025 5.4:-18118129 MS.gene070117:CDS
ATGGAAAGTGGAGGGAGAGG+AGG 0.521924 5.4:-18118190 MS.gene070117:CDS
GACAAAGCGGTCGTGAAGAT+CGG 0.522630 5.4:+18118099 None:intergenic
AACTATGGAGGTGATAATGA+AGG 0.530299 5.4:-18116798 MS.gene070117:CDS
GAGGGAGAGGAGGAATTGAA+GGG 0.537312 5.4:-18118180 MS.gene070117:CDS
AACTAAAGCCTCAAGTTGAA+GGG 0.540564 5.4:-18115821 MS.gene070117:CDS
GACGCTGTCACAAAGCTTGG+TGG 0.544188 5.4:-18118076 MS.gene070117:CDS
TCAATTATCAAGAAGTACTA+GGG 0.553916 5.4:-18115860 MS.gene070117:CDS
ACTAAAGCCTCAAGTTGAAG+GGG 0.554788 5.4:-18115820 MS.gene070117:CDS
TCCCAATAGGAGAAGCACTA+AGG 0.559258 5.4:-18116545 MS.gene070117:CDS
CAAACAAGCCTTTCTCAAGA+TGG 0.560229 5.4:-18116026 MS.gene070117:CDS
GAGGTATGATGGAAAGTGGA+GGG 0.562144 5.4:-18118198 None:intergenic
AGAGGTATGATGGAAAGTGG+AGG 0.565667 5.4:-18118199 None:intergenic
ACTATGGAGGTGATAATGAA+GGG 0.578144 5.4:-18116797 MS.gene070117:CDS
GGCTCAAGGGAAGTATTTGG+AGG 0.583375 5.4:-18116066 MS.gene070117:CDS
ATTCTGCAGAAGTATAGACT+TGG 0.585105 5.4:-18117117 MS.gene070117:intron
TCGGTTGTCCACCTCAGCCT+CGG 0.594438 5.4:+18118118 None:intergenic
TGACGAGAGACCCGAAGCCG+AGG 0.603102 5.4:-18118135 MS.gene070117:CDS
AAATGAGAATAGAGGCTCAA+GGG 0.615268 5.4:-18116079 MS.gene070117:CDS
CAAATGAGAATAGAGGCTCA+AGG 0.629250 5.4:-18116080 MS.gene070117:CDS
AGAAGAGGTACATACTGTCA+GGG 0.640171 5.4:+18118053 None:intergenic
CTATGGAGGTGATAATGAAG+GGG 0.661113 5.4:-18116796 MS.gene070117:CDS
GGGACTAATACCAACTATGG+AGG 0.669862 5.4:-18116810 MS.gene070117:CDS
CTAGACTTAAACATTAAAGG+TGG 0.670077 5.4:-18115786 MS.gene070117:CDS
ATGGAGGTGATAATGAAGGG+GGG 0.671828 5.4:-18116794 MS.gene070117:intron
TATGGAGGTGATAATGAAGG+GGG 0.676383 5.4:-18116795 MS.gene070117:CDS
AGCCTTTCTCAAGATGGACA+AGG 0.682280 5.4:-18116020 MS.gene070117:CDS
GAGATTGGAAGAACAACTTG+AGG 0.683401 5.4:-18116502 MS.gene070117:intron
TTGTGACAGCGTCGACAAAG+CGG 0.699468 5.4:+18118086 None:intergenic
CTAAAGCCTCAAGTTGAAGG+GGG 0.707595 5.4:-18115819 MS.gene070117:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATATATTTAATTTATGA+CGG - chr5.4:18116360-18116379 MS.gene070117:intron 10.0%
!!! ATTTTATTTTTTGACTAAAA+AGG + chr5.4:18116301-18116320 None:intergenic 10.0%
!!! TAATTAGCATTTTAATTTTT+AGG - chr5.4:18117285-18117304 MS.gene070117:intron 10.0%
!!! TCTAAATATTTTCTTATTAA+TGG - chr5.4:18116097-18116116 MS.gene070117:CDS 10.0%
!! AATTAAAATGCTAATTACAT+AGG + chr5.4:18117282-18117301 None:intergenic 15.0%
!! ATAAACTAGTAGTTAAAAAT+AGG - chr5.4:18116384-18116403 MS.gene070117:intron 15.0%
!! TATTATCATTAATTAGAGAA+CGG - chr5.4:18116449-18116468 MS.gene070117:intron 15.0%
!! AATCAAATATGGTTTCATAT+AGG - chr5.4:18118178-18118197 MS.gene070117:CDS 20.0%
!! TATATCATCACTATGTAAAA+AGG + chr5.4:18116348-18116367 None:intergenic 20.0%
!! TCTGCAGAATTAATATAAAA+TGG + chr5.4:18116779-18116798 None:intergenic 20.0%
!!! TTATTTTTTGACTAAAAAGG+TGG + chr5.4:18116298-18116317 None:intergenic 20.0%
!!! TTTTTGTCTTTCATCTTTTT+AGG - chr5.4:18117039-18117058 MS.gene070117:intron 20.0%
! AATTGAAGTTCAAAAGAGAT+TGG - chr5.4:18117389-18117408 MS.gene070117:intron 25.0%
! ATGTAAAAAGGCAAAAGAAA+AGG + chr5.4:18116336-18116355 None:intergenic 25.0%
! ATTAACCTTAGAACAGATTT+AGG + chr5.4:18116216-18116235 None:intergenic 25.0%
! CTATATATACCAATTCTTTG+AGG + chr5.4:18116742-18116761 None:intergenic 25.0%
! CTCAAAGAATTGGTATATAT+AGG - chr5.4:18116740-18116759 MS.gene070117:intron 25.0%
! GAATCATAAGCTTTCAAAAT+TGG + chr5.4:18116079-18116098 None:intergenic 25.0%
! GCAATCATTTCTATTACATT+TGG - chr5.4:18117010-18117029 MS.gene070117:intron 25.0%
! TAAATTGCAAATGAGAATAG+AGG - chr5.4:18117819-18117838 MS.gene070117:intron 25.0%
! TAAGGATATATATACTCCTT+TGG + chr5.4:18117746-18117765 None:intergenic 25.0%
! TTCTCAATTGTCAATTACAT+AGG + chr5.4:18117515-18117534 None:intergenic 25.0%
!! ACATTCAAGTTAACTTGAAA+GGG - chr5.4:18115992-18116011 MS.gene070117:CDS 25.0%
!!! AAATCTGTTCTAAGGTTAAT+GGG - chr5.4:18116216-18116235 MS.gene070117:intron 25.0%
!!! AGAAGTTTTAGATGAGAATT+TGG + chr5.4:18117257-18117276 None:intergenic 25.0%
!!! TAAATCTGTTCTAAGGTTAA+TGG - chr5.4:18116215-18116234 MS.gene070117:intron 25.0%
!!! TCAATTATCAAGAAGTACTA+GGG - chr5.4:18118046-18118065 MS.gene070117:intron 25.0%
!!! TGAAAGGGAAGTTTTTTTTT+TGG - chr5.4:18116007-18116026 MS.gene070117:CDS 25.0%
!!! TTCAATTATCAAGAAGTACT+AGG - chr5.4:18118045-18118064 MS.gene070117:intron 25.0%
AAGTGTCTCAAATAAGTGAA+GGG - chr5.4:18116881-18116900 MS.gene070117:intron 30.0%
AATCGAACATGATACATCAT+AGG + chr5.4:18117586-18117605 None:intergenic 30.0%
AATGAACTTGTATCTGTAGA+TGG - chr5.4:18118144-18118163 MS.gene070117:CDS 30.0%
AATTCAGAGAAGCTATACAT+TGG - chr5.4:18116628-18116647 MS.gene070117:intron 30.0%
AATTTCAGTAACCATTCTTC+AGG - chr5.4:18117075-18117094 MS.gene070117:CDS 30.0%
ACAAATCTAGATGAAAGAAG+AGG + chr5.4:18115871-18115890 None:intergenic 30.0%
AGCTGAAATGGAATCAAATA+TGG - chr5.4:18118167-18118186 MS.gene070117:CDS 30.0%
ATTTCAGTAACCATTCTTCA+GGG - chr5.4:18117076-18117095 MS.gene070117:CDS 30.0%
CAATTGGACTGTTTAATTCT+AGG - chr5.4:18117789-18117808 MS.gene070117:intron 30.0%
CAGCTAGACTTAAACATTAA+AGG - chr5.4:18118117-18118136 MS.gene070117:CDS 30.0%
CTAAGGTTAATGGGATTAAA+AGG - chr5.4:18116225-18116244 MS.gene070117:intron 30.0%
CTAGAATTAAACAGTCCAAT+TGG + chr5.4:18117791-18117810 None:intergenic 30.0%
CTAGACTTAAACATTAAAGG+TGG - chr5.4:18118120-18118139 MS.gene070117:CDS 30.0%
CTAGTGAATTTCTAACCAAT+TGG - chr5.4:18117773-18117792 MS.gene070117:intron 30.0%
CTTGAGCATGATTCTTATTA+TGG + chr5.4:18118023-18118042 None:intergenic 30.0%
GAATTGTCGTTAAACTAGTT+AGG + chr5.4:18117332-18117351 None:intergenic 30.0%
GAGGAGAAAACAACATTATT+AGG + chr5.4:18116723-18116742 None:intergenic 30.0%
GATAAAGTATGTACATGTTG+TGG - chr5.4:18116526-18116545 MS.gene070117:CDS 30.0%
GGTTAGAAATTCACTAGTTA+GGG + chr5.4:18117770-18117789 None:intergenic 30.0%
GTCTTATAATAAGAGACCAA+AGG - chr5.4:18117727-18117746 MS.gene070117:intron 30.0%
TAATGCATCAAAAGCTCAAT+TGG - chr5.4:18117915-18117934 MS.gene070117:intron 30.0%
TAGAAGTTGTTACCTGTAAA+TGG + chr5.4:18116275-18116294 None:intergenic 30.0%
TCATCATTAGTGTCATAGAT+TGG - chr5.4:18116686-18116705 MS.gene070117:intron 30.0%
TGGTCTCTTATTATAAGACT+CGG + chr5.4:18117726-18117745 None:intergenic 30.0%
TGGTTAGAAATTCACTAGTT+AGG + chr5.4:18117771-18117790 None:intergenic 30.0%
TGTTGAAAGAGATGAGAATT+TGG + chr5.4:18117215-18117234 None:intergenic 30.0%
! AAAGTGTCTCAAATAAGTGA+AGG - chr5.4:18116880-18116899 MS.gene070117:intron 30.0%
! AGAAAGTGTGATGGAAAATT+TGG - chr5.4:18116047-18116066 MS.gene070117:CDS 30.0%
! ATGATGATGTAATGAACTTC+TGG + chr5.4:18116673-18116692 None:intergenic 30.0%
! CACATTCAAGTTAACTTGAA+AGG - chr5.4:18115991-18116010 MS.gene070117:CDS 30.0%
! GAAAGTGTGATGGAAAATTT+GGG - chr5.4:18116048-18116067 MS.gene070117:CDS 30.0%
! TTGTTTTCTCCTCAAAGAAT+TGG - chr5.4:18116730-18116749 MS.gene070117:intron 30.0%
!! TTGTTTGCTTTTGTGTTTAG+AGG - chr5.4:18116185-18116204 MS.gene070117:intron 30.0%
!!! TTGTAGTCATAGTTTTGTTG+CGG - chr5.4:18115903-18115922 MS.gene070117:CDS 30.0%
AAATGAGAATAGAGGCTCAA+GGG - chr5.4:18117827-18117846 MS.gene070117:intron 35.0%
AAATTCACTAGTTAGGGCTA+AGG + chr5.4:18117764-18117783 None:intergenic 35.0%
ACTAGGGACAGAAGAAAATA+AGG - chr5.4:18118062-18118081 MS.gene070117:intron 35.0%
AGAGAACGGTACACTTTAAA+GGG - chr5.4:18116463-18116482 MS.gene070117:intron 35.0%
AGTGTCTCAAATAAGTGAAG+GGG - chr5.4:18116882-18116901 MS.gene070117:intron 35.0%
ATTCACAGAGAAATCCCAAT+AGG - chr5.4:18117348-18117367 MS.gene070117:intron 35.0%
CGAACTAGAGTGCAATATTT+AGG + chr5.4:18115948-18115967 None:intergenic 35.0%
GTATGTACATGTTGTGGAAT+TGG - chr5.4:18116532-18116551 MS.gene070117:CDS 35.0%
TAGAGAACGGTACACTTTAA+AGG - chr5.4:18116462-18116481 MS.gene070117:intron 35.0%
TATAGCTTCTCTGAATTGAG+AGG + chr5.4:18116625-18116644 None:intergenic 35.0%
TCATTTGAAGAGCCATTTAC+AGG - chr5.4:18116260-18116279 MS.gene070117:intron 35.0%
TTCATTATCACCTCCATAGT+TGG + chr5.4:18117109-18117128 None:intergenic 35.0%
TTTAGAAGAGTCCTACTGTA+TGG + chr5.4:18117628-18117647 None:intergenic 35.0%
! AACTATGGAGGTGATAATGA+AGG - chr5.4:18117108-18117127 MS.gene070117:CDS 35.0%
! ACTATGGAGGTGATAATGAA+GGG - chr5.4:18117109-18117128 MS.gene070117:CDS 35.0%
! ATTCTGCAGAAGTATAGACT+TGG - chr5.4:18116789-18116808 MS.gene070117:intron 35.0%
! GACATTGAAAGAAAGTGTGA+TGG - chr5.4:18116038-18116057 MS.gene070117:CDS 35.0%
! GACTCGGATACTAATTTTAG+TGG + chr5.4:18117710-18117729 None:intergenic 35.0%
!! AACTAAAGCCTCAAGTTGAA+GGG - chr5.4:18118085-18118104 MS.gene070117:CDS 35.0%
ATCTGTAGATGGAGCTGAAA+TGG - chr5.4:18118155-18118174 MS.gene070117:CDS 40.0%
CAAACAAGCCTTTCTCAAGA+TGG - chr5.4:18117880-18117899 MS.gene070117:intron 40.0%
CAAATGAGAATAGAGGCTCA+AGG - chr5.4:18117826-18117845 MS.gene070117:intron 40.0%
CGACTCCTAAATCTGTTCTA+AGG - chr5.4:18116208-18116227 MS.gene070117:intron 40.0%
GAGATTGGAAGAACAACTTG+AGG - chr5.4:18117404-18117423 MS.gene070117:intron 40.0%
GGCTTGATTGATGTATGTAG+TGG - chr5.4:18116118-18116137 MS.gene070117:intron 40.0%
GTGTCTCAAATAAGTGAAGG+GGG - chr5.4:18116883-18116902 MS.gene070117:intron 40.0%
TCAGGGACTAATACCAACTA+TGG - chr5.4:18117093-18117112 MS.gene070117:CDS 40.0%
TGGTATTAGTCCCTGAAGAA+TGG + chr5.4:18117089-18117108 None:intergenic 40.0%
! AAGAAGAGGTACATACTGTC+AGG + chr5.4:18115857-18115876 None:intergenic 40.0%
! AGAAGAGGTACATACTGTCA+GGG + chr5.4:18115856-18115875 None:intergenic 40.0%
! CTATGGAGGTGATAATGAAG+GGG - chr5.4:18117110-18117129 MS.gene070117:CDS 40.0%
! CTCAGCTTTGTCAAACTTCA+TGG - chr5.4:18117948-18117967 MS.gene070117:intron 40.0%
! TATGGAGGTGATAATGAAGG+GGG - chr5.4:18117111-18117130 MS.gene070117:CDS 40.0%
!! ACTAAAGCCTCAAGTTGAAG+GGG - chr5.4:18118086-18118105 MS.gene070117:CDS 40.0%
!! GAACTAAAGCCTCAAGTTGA+AGG - chr5.4:18118084-18118103 MS.gene070117:CDS 40.0%
AGCCTTTCTCAAGATGGACA+AGG - chr5.4:18117886-18117905 MS.gene070117:intron 45.0%
GCCTTAGTGCTTCTCCTATT+GGG + chr5.4:18117365-18117384 None:intergenic 45.0%
GGGACTAATACCAACTATGG+AGG - chr5.4:18117096-18117115 MS.gene070117:CDS 45.0%
TGCCTTAGTGCTTCTCCTAT+TGG + chr5.4:18117366-18117385 None:intergenic 45.0%
TGCCTTGTCCATCTTGAGAA+AGG + chr5.4:18117891-18117910 None:intergenic 45.0%
! ATGGAGGTGATAATGAAGGG+GGG - chr5.4:18117112-18117131 MS.gene070117:intron 45.0%
! GGAGGAATTGAAGGGTATGA+TGG - chr5.4:18115734-18115753 MS.gene070117:CDS 45.0%
!! AGAGGCTCAAGGGAAGTATT+TGG - chr5.4:18117837-18117856 MS.gene070117:intron 45.0%
!! CTAAAGCCTCAAGTTGAAGG+GGG - chr5.4:18118087-18118106 MS.gene070117:CDS 45.0%
!! TCCCAATAGGAGAAGCACTA+AGG - chr5.4:18117361-18117380 MS.gene070117:intron 45.0%
AGTCCTACTGTATGGTGCGA+AGG + chr5.4:18117620-18117639 None:intergenic 50.0%
ATTGCACCCCCTTCAACTTG+AGG + chr5.4:18118096-18118115 None:intergenic 50.0%
GACAAAGCGGTCGTGAAGAT+CGG + chr5.4:18115810-18115829 None:intergenic 50.0%
GAGGGAGAGGAGGAATTGAA+GGG - chr5.4:18115726-18115745 MS.gene070117:CDS 50.0%
GTCCTACTGTATGGTGCGAA+GGG + chr5.4:18117619-18117638 None:intergenic 50.0%
! ATGATGGAAAGTGGAGGGAG+AGG - chr5.4:18115713-18115732 MS.gene070117:CDS 50.0%
!! GGCTCAAGGGAAGTATTTGG+AGG - chr5.4:18117840-18117859 MS.gene070117:intron 50.0%
!! TTGTGACAGCGTCGACAAAG+CGG + chr5.4:18115823-18115842 None:intergenic 50.0%
ATGGAAAGTGGAGGGAGAGG+AGG - chr5.4:18115716-18115735 MS.gene070117:CDS 55.0%
GACGCTGTCACAAAGCTTGG+TGG - chr5.4:18115830-18115849 MS.gene070117:CDS 55.0%
GGAGGGAGAGGAGGAATTGA+AGG - chr5.4:18115725-18115744 MS.gene070117:CDS 55.0%
GTCGACGCTGTCACAAAGCT+TGG - chr5.4:18115827-18115846 MS.gene070117:CDS 55.0%
TGCCCTTCGCACCATACAGT+AGG - chr5.4:18117614-18117633 MS.gene070117:intron 55.0%
TCGGTTGTCCACCTCAGCCT+CGG + chr5.4:18115791-18115810 None:intergenic 60.0%
GTCCACCTCAGCCTCGGCTT+CGG + chr5.4:18115785-18115804 None:intergenic 65.0%
TCCACCTCAGCCTCGGCTTC+GGG + chr5.4:18115784-18115803 None:intergenic 65.0%
TGACGAGAGACCCGAAGCCG+AGG - chr5.4:18115771-18115790 MS.gene070117:CDS 65.0%
ACCCGAAGCCGAGGCTGAGG+TGG - chr5.4:18115780-18115799 MS.gene070117:CDS 70.0%
GAGACCCGAAGCCGAGGCTG+AGG - chr5.4:18115777-18115796 MS.gene070117:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 18115713 18118215 18115713 ID=MS.gene070117
chr5.4 mRNA 18115713 18118215 18115713 ID=MS.gene070117.t1;Parent=MS.gene070117
chr5.4 exon 18118068 18118215 18118068 ID=MS.gene070117.t1.exon1;Parent=MS.gene070117.t1
chr5.4 CDS 18118068 18118215 18118068 ID=cds.MS.gene070117.t1;Parent=MS.gene070117.t1
chr5.4 exon 18117647 18117723 18117647 ID=MS.gene070117.t1.exon2;Parent=MS.gene070117.t1
chr5.4 CDS 18117647 18117723 18117647 ID=cds.MS.gene070117.t1;Parent=MS.gene070117.t1
chr5.4 exon 18117070 18117130 18117070 ID=MS.gene070117.t1.exon3;Parent=MS.gene070117.t1
chr5.4 CDS 18117070 18117130 18117070 ID=cds.MS.gene070117.t1;Parent=MS.gene070117.t1
chr5.4 exon 18116795 18116867 18116795 ID=MS.gene070117.t1.exon4;Parent=MS.gene070117.t1
chr5.4 CDS 18116795 18116867 18116795 ID=cds.MS.gene070117.t1;Parent=MS.gene070117.t1
chr5.4 exon 18116503 18116572 18116503 ID=MS.gene070117.t1.exon5;Parent=MS.gene070117.t1
chr5.4 CDS 18116503 18116572 18116503 ID=cds.MS.gene070117.t1;Parent=MS.gene070117.t1
chr5.4 exon 18115713 18116117 18115713 ID=MS.gene070117.t1.exon6;Parent=MS.gene070117.t1
chr5.4 CDS 18115713 18116117 18115713 ID=cds.MS.gene070117.t1;Parent=MS.gene070117.t1
Gene Sequence

>MS.gene070117

ATGATGGAAAGTGGAGGGAGAGGAGGAATTGAAGGGTATGATGGAATGATGATGACGATGACGAGAGACCCGAAGCCGAGGCTGAGGTGGACAACCGATCTTCACGACCGCTTTGTCGACGCTGTCACAAAGCTTGGTGGCCCTGACAGTATGTACCTCTTCTTTCATCTAGATTTGTTTAGTTTTTAAATTGTAGTCATAGTTTTGTTGCGGTAGCAAAGACATAGAAACACCTAAATATTGCACTCTAGTTCGCAGTTGCATTTTAGTGTTTGATACACATTCAAGTTAACTTGAAAGGGAAGTTTTTTTTTTGGTTAGAATTGACATTGAAAGAAAGTGTGATGGAAAATTTGGGCTAGTCCAATTTTGAAAGCTTATGATTCTAAATATTTTCTTATTAATGGCTTGATTGATGTATGTAGTGGTTCTTAGCTTGTCACAAAATGATATTAAGTTGCAATGTTATTTTTTGTTTGCTTTTGTGTTTAGAGGCGACTCCTAAATCTGTTCTAAGGTTAATGGGATTAAAAGGTTTGACATTATATCATTTGAAGAGCCATTTACAGGTAACAACTTCTACCACCTTTTTAGTCAAAAAATAAAATAAAATTTCTACACCTTTTCTTTTGCCTTTTTACATAGTGATGATATATTTAATTTATGACGGTATAAACTAGTAGTTAAAAATAGGTTGCGAAGTGAAAAGACAAATTAGTATTAGTTATAGAGATTATATTATCATTAATTAGAGAACGGTACACTTTAAAGGGTAAACTAATTGAAAAATAAATAGTTGAAGCTTGAGTTTGTGATAAAGTATGTACATGTTGTGGAATTGGTAAAAATATTAATGATCATGACTTTCTAATCAATGTTATAATTTCATATTTTATTCTCTAAAGTGTTCCTCTCAATTCAGAGAAGCTATACATTGGAATGAAAATTCTGAAATTACCAGAAGTTCATTACATCATCATTAGTGTCATAGATTGGTACATTAATATCCTAATAATGTTGTTTTCTCCTCAAAGAATTGGTATATATAGGCATAAAATGACATCCATTTTATATTAATTCTGCAGAAGTATAGACTTGGACAACATGCTCGAAAACAAAATGAAGAACAATTCAAAGAGAATAACAGTGAGTTCATTACAAATTTTGAAAGTGTCTCAAATAAGTGAAGGGGGTGTGTGTTTAGATTGACTTGTTTGAGAGTTTACGAAGAGAGCTTATGAAAACAGCTTATGATCTGTTCATAACTTCATAAGCTTTTTTCAGATAACTTTCATTAGCAATCATTTCTATTACATTTGGTTGATTTTTTTGTCTTTCATCTTTTTAGGATGTTCGTATGTAAATTTCAGTAACCATTCTTCAGGGACTAATACCAACTATGGAGGTGATAATGAAGGGGGGTATGTTTAGAATTTAATCAAAATTCACTTATTTTGCTTAATAGTTATTATTATACGTATGACTATATTTTTCATGAGCCAAATTCTCATCTCTTTCAACAAAAAAAAAAAAAAAACGAGCCAAATTCTCATCTAAAACTTCTTACCTATGTAATTAGCATTTTAATTTTTAGGTAAATACAACTTATTATATTTCCTAACTAGTTTAACGACAATTCACAGAGAAATCCCAATAGGAGAAGCACTAAGGCAACAAATTGAAGTTCAAAAGAGATTGGAAGAACAACTTGAGGTACTCTCTCACTTTTTCTTTTACTTGCACTATAAGACACTTTTTAAAATTTTACATGTATTAATCATTTTTTTTACAAAAATATTCCTATGTAATTGACAATTGAGAAAAGTAAATTCATTATCTTTAATTTTATTTTAAAAACATAAAAGCACTACCTATGATGTATCATGTTCGATTGTTCGTTGTGCCCTTCGCACCATACAGTAGGACTCTTCTAAAAAAATAACGCATTTTTTTTTAATAAATTTATTGCTAATATACTATTTTTTTTCGTAATACCACTAAAATTAGTATCCGAGTCTTATAATAAGAGACCAAAGGAGTATATATATCCTTAGCCCTAACTAGTGAATTTCTAACCAATTGGACTGTTTAATTCTAGGTACAAAATAAATTGCAAATGAGAATAGAGGCTCAAGGGAAGTATTTGGAGGCAGTGTTAGAGAAAGCACAAACAAGCCTTTCTCAAGATGGACAAGGCAATCTTAATGCATCAAAAGCTCAATTGGTTGAGTTCAACTCAGCTTTGTCAAACTTCATGGAAAATATGAATAAAGATAGTAAAGAAAACATACTAGACATGAATGAATTCCATAATAAGAATCATGCTCAAGCTTTCAATTATCAAGAAGTACTAGGGACAGAAGAAAATAAGGAACTAAAGCCTCAAGTTGAAGGGGGTGCAATACAGCTAGACTTAAACATTAAAGGTGGCAATGAACTTGTATCTGTAGATGGAGCTGAAATGGAATCAAATATGGTTTCATATAGGCTATACCATTTTTGA
Protein sequence

>MS.gene070117.t1

MMESGGRGGIEGYDGMMMTMTRDPKPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQHARKQNEEQFKENNRCSYVNFSNHSSGTNTNYGGDNEGGEIPIGEALRQQIEVQKRLEEQLEVQNKLQMRIEAQGKYLEAVLEKAQTSLSQDGQGNLNASKAQLVEFNSALSNFMENMNKDSKENILDMNEFHNKNHAQAFNYQEVLGTEENKELKPQVEGGAIQLDLNIKGGNELVSVDGAEMESNMVSYRLYHF