Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070125.t1 | XP_003612666.2 | 83.3 | 240 | 18 | 4 | 1 | 229 | 1 | 229 | 1.40E-99 | 372.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070125.t1 | Q8S9H7 | 45.9 | 109 | 49 | 3 | 80 | 181 | 124 | 229 | 1.7e-16 | 87.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070125.t1 | G7K884 | 83.3 | 240 | 18 | 4 | 1 | 229 | 1 | 229 | 1.0e-99 | 372.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene070125.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070125.t1 | MTR_5g027550 | 83.333 | 240 | 18 | 4 | 1 | 229 | 1 | 229 | 2.04e-126 | 357 |
| MS.gene070125.t1 | MTR_5g027570 | 63.636 | 242 | 64 | 7 | 1 | 229 | 1 | 231 | 2.13e-97 | 283 |
| MS.gene070125.t1 | MTR_5g088060 | 52.128 | 282 | 73 | 8 | 1 | 229 | 189 | 461 | 9.76e-77 | 238 |
| MS.gene070125.t1 | MTR_5g488160 | 52.128 | 282 | 73 | 8 | 1 | 229 | 189 | 461 | 9.76e-77 | 238 |
| MS.gene070125.t1 | MTR_5g088010 | 51.779 | 253 | 66 | 6 | 29 | 229 | 1 | 249 | 2.39e-74 | 226 |
| MS.gene070125.t1 | MTR_7g067080 | 56.579 | 76 | 30 | 1 | 84 | 159 | 136 | 208 | 1.87e-22 | 93.6 |
| MS.gene070125.t1 | MTR_1g111830 | 34.118 | 170 | 95 | 6 | 41 | 200 | 76 | 238 | 6.22e-22 | 90.9 |
| MS.gene070125.t1 | MTR_3g462790 | 57.895 | 76 | 29 | 1 | 84 | 159 | 143 | 215 | 9.34e-22 | 91.7 |
| MS.gene070125.t1 | MTR_5g069710 | 57.895 | 76 | 29 | 1 | 84 | 159 | 128 | 200 | 1.52e-21 | 90.9 |
| MS.gene070125.t1 | MTR_5g081860 | 43.651 | 126 | 61 | 4 | 35 | 156 | 73 | 192 | 2.43e-21 | 89.7 |
| MS.gene070125.t1 | MTR_8g063600 | 50.000 | 80 | 39 | 1 | 84 | 163 | 102 | 180 | 2.48e-20 | 87.4 |
| MS.gene070125.t1 | MTR_4g111975 | 44.565 | 92 | 45 | 2 | 84 | 172 | 134 | 222 | 4.78e-20 | 86.7 |
| MS.gene070125.t1 | MTR_8g063870 | 51.765 | 85 | 38 | 2 | 81 | 163 | 83 | 166 | 9.54e-20 | 85.5 |
| MS.gene070125.t1 | MTR_6g092540 | 52.778 | 72 | 31 | 1 | 84 | 155 | 93 | 161 | 3.16e-19 | 84.3 |
| MS.gene070125.t1 | MTR_2g100930 | 38.318 | 107 | 63 | 1 | 84 | 190 | 105 | 208 | 3.45e-19 | 85.1 |
| MS.gene070125.t1 | MTR_4g100630 | 33.594 | 128 | 79 | 2 | 43 | 167 | 47 | 171 | 1.49e-18 | 83.2 |
| MS.gene070125.t1 | MTR_8g101650 | 52.778 | 72 | 30 | 1 | 84 | 155 | 101 | 168 | 3.80e-18 | 81.3 |
| MS.gene070125.t1 | MTR_4g107230 | 33.562 | 146 | 70 | 5 | 71 | 215 | 66 | 185 | 4.51e-18 | 81.3 |
| MS.gene070125.t1 | MTR_1g048660 | 51.389 | 72 | 32 | 1 | 90 | 161 | 14 | 82 | 6.07e-18 | 76.3 |
| MS.gene070125.t1 | MTR_4g015130 | 54.839 | 62 | 25 | 1 | 98 | 159 | 3 | 61 | 1.21e-17 | 75.1 |
| MS.gene070125.t1 | MTR_3g104370 | 45.946 | 74 | 40 | 0 | 82 | 155 | 85 | 158 | 2.11e-17 | 78.6 |
| MS.gene070125.t1 | MTR_5g037080 | 45.349 | 86 | 40 | 1 | 50 | 135 | 71 | 149 | 4.11e-17 | 79.0 |
| MS.gene070125.t1 | MTR_5g075760 | 34.722 | 144 | 82 | 4 | 37 | 180 | 61 | 192 | 4.51e-17 | 77.0 |
| MS.gene070125.t1 | MTR_5g075790 | 32.812 | 128 | 77 | 3 | 57 | 180 | 78 | 200 | 1.38e-15 | 73.2 |
| MS.gene070125.t1 | MTR_1g083180 | 43.038 | 79 | 44 | 1 | 85 | 163 | 58 | 135 | 5.35e-15 | 70.9 |
| MS.gene070125.t1 | MTR_0036s0260 | 39.241 | 79 | 45 | 1 | 88 | 166 | 28 | 103 | 6.77e-15 | 71.2 |
| MS.gene070125.t1 | MTR_3g070110 | 48.611 | 72 | 33 | 1 | 89 | 156 | 96 | 167 | 1.53e-14 | 70.5 |
| MS.gene070125.t1 | MTR_1g033620 | 43.333 | 90 | 42 | 4 | 104 | 192 | 21 | 102 | 2.31e-14 | 70.5 |
| MS.gene070125.t1 | MTR_2g090305 | 40.506 | 79 | 44 | 1 | 88 | 166 | 28 | 103 | 5.27e-14 | 68.2 |
| MS.gene070125.t1 | MTR_8g072990 | 38.235 | 68 | 41 | 1 | 83 | 150 | 95 | 161 | 7.36e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070125.t1 | AT5G58900 | 57.895 | 76 | 29 | 1 | 84 | 159 | 137 | 209 | 1.15e-22 | 93.6 |
| MS.gene070125.t1 | AT5G01200 | 57.895 | 76 | 29 | 1 | 84 | 159 | 142 | 214 | 4.16e-22 | 91.7 |
| MS.gene070125.t1 | AT2G38090 | 55.263 | 76 | 31 | 1 | 84 | 159 | 137 | 209 | 6.82e-22 | 91.7 |
| MS.gene070125.t1 | AT5G23650 | 42.222 | 135 | 70 | 3 | 71 | 205 | 103 | 229 | 1.13e-21 | 91.7 |
| MS.gene070125.t1 | AT5G08520 | 36.957 | 138 | 77 | 3 | 35 | 165 | 58 | 192 | 1.19e-21 | 91.3 |
| MS.gene070125.t1 | AT3G11280 | 50.000 | 86 | 40 | 1 | 74 | 159 | 113 | 195 | 3.78e-21 | 89.4 |
| MS.gene070125.t1 | AT3G11280 | 50.000 | 86 | 40 | 1 | 74 | 159 | 113 | 195 | 3.78e-21 | 89.4 |
| MS.gene070125.t1 | AT5G04760 | 54.321 | 81 | 30 | 2 | 76 | 156 | 91 | 164 | 1.90e-20 | 86.3 |
| MS.gene070125.t1 | AT3G10580 | 44.444 | 99 | 47 | 3 | 72 | 168 | 77 | 169 | 1.96e-20 | 87.0 |
| MS.gene070125.t1 | AT3G10580 | 44.444 | 99 | 47 | 3 | 72 | 168 | 77 | 169 | 2.73e-20 | 87.4 |
| MS.gene070125.t1 | AT5G05790 | 48.276 | 87 | 42 | 1 | 73 | 159 | 116 | 199 | 4.14e-20 | 86.7 |
| MS.gene070125.t1 | AT5G05790 | 48.276 | 87 | 42 | 1 | 73 | 159 | 116 | 199 | 4.14e-20 | 86.7 |
| MS.gene070125.t1 | AT1G49010 | 48.148 | 81 | 39 | 1 | 80 | 160 | 126 | 203 | 1.14e-19 | 85.9 |
| MS.gene070125.t1 | AT5G61620 | 50.000 | 80 | 33 | 2 | 78 | 157 | 102 | 174 | 6.18e-19 | 84.0 |
| MS.gene070125.t1 | AT1G19000 | 48.101 | 79 | 36 | 1 | 61 | 134 | 70 | 148 | 1.08e-18 | 82.8 |
| MS.gene070125.t1 | AT1G19000 | 48.101 | 79 | 36 | 1 | 61 | 134 | 70 | 148 | 1.08e-18 | 82.8 |
| MS.gene070125.t1 | AT5G47390 | 41.304 | 92 | 48 | 2 | 80 | 171 | 88 | 173 | 6.16e-18 | 81.6 |
| MS.gene070125.t1 | AT5G56840 | 48.052 | 77 | 38 | 1 | 84 | 160 | 87 | 161 | 9.28e-18 | 79.3 |
| MS.gene070125.t1 | AT1G74840 | 42.308 | 104 | 52 | 3 | 71 | 174 | 79 | 174 | 1.72e-17 | 79.3 |
| MS.gene070125.t1 | AT1G74840 | 42.308 | 104 | 52 | 3 | 71 | 174 | 79 | 174 | 1.80e-17 | 79.0 |
| MS.gene070125.t1 | AT4G09450 | 36.641 | 131 | 63 | 4 | 37 | 167 | 54 | 164 | 5.83e-17 | 76.6 |
| MS.gene070125.t1 | AT1G70000 | 45.349 | 86 | 32 | 2 | 65 | 135 | 60 | 145 | 3.10e-16 | 75.9 |
| MS.gene070125.t1 | AT1G70000 | 45.349 | 86 | 32 | 2 | 65 | 135 | 60 | 145 | 3.10e-16 | 75.9 |
| MS.gene070125.t1 | AT3G10590 | 44.118 | 102 | 50 | 3 | 62 | 161 | 84 | 180 | 3.95e-16 | 74.3 |
| MS.gene070125.t1 | AT3G16350 | 41.860 | 86 | 50 | 0 | 50 | 135 | 99 | 184 | 1.25e-15 | 75.5 |
Find 45 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATTGTCCTTGTTATTTA+AGG | 0.115096 | 5.4:-18231310 | None:intergenic |
| TAATGTGTCATTGTTGTTTA+AGG | 0.162350 | 5.4:-18231235 | None:intergenic |
| TTTCTTCTTCTCTATTTCTT+TGG | 0.241888 | 5.4:-18231187 | None:intergenic |
| TCTCTATTTCTTTGGCAGTT+TGG | 0.295652 | 5.4:-18231179 | None:intergenic |
| TTCTCAAGTTTGTTCATATC+AGG | 0.295923 | 5.4:-18231396 | None:intergenic |
| TTTGCTTCATGATTTCCTTC+TGG | 0.308505 | 5.4:-18229371 | None:intergenic |
| GCGCAACTTGTTCAACTTGT+TGG | 0.354873 | 5.4:+18231422 | MS.gene070125:CDS |
| GATATGTAGGTCGTTTCTAC+AGG | 0.371977 | 5.4:+18231047 | MS.gene070125:intron |
| ACGTTATTATCATTAGAGTT+TGG | 0.391291 | 5.4:-18229299 | None:intergenic |
| TGTTGGTCCATGCTACTCTC+AGG | 0.426716 | 5.4:-18229224 | None:intergenic |
| AGGCCAACTGATACATTTGT+TGG | 0.437602 | 5.4:-18231347 | None:intergenic |
| CTATTTCTTTGGCAGTTTGG+TGG | 0.446999 | 5.4:-18231176 | None:intergenic |
| GACACTGATGTCGTTGAGTC+GGG | 0.460235 | 5.4:+18229260 | MS.gene070125:CDS |
| TTGGCCTTGCTTTATCCAAT+CGG | 0.464369 | 5.4:+18231363 | MS.gene070125:CDS |
| GAGTTTGGAATTGCGACGGC+AGG | 0.472532 | 5.4:-18229284 | None:intergenic |
| GGCCAACTGATACATTTGTT+GGG | 0.476834 | 5.4:-18231346 | None:intergenic |
| GCATGACTAGCAATTTGAGT+TGG | 0.487768 | 5.4:-18231135 | None:intergenic |
| TGTCAAGTATCCCTCGTTGT+TGG | 0.525541 | 5.4:-18229241 | None:intergenic |
| GTTGGTCCATGCTACTCTCA+GGG | 0.529569 | 5.4:-18229223 | None:intergenic |
| AAAGAGAGGGCGTAAGGAAA+GGG | 0.530997 | 5.4:+18229391 | MS.gene070125:CDS |
| CAAAGAGAGGGCGTAAGGAA+AGG | 0.532803 | 5.4:+18229390 | MS.gene070125:CDS |
| TGACACTGATGTCGTTGAGT+CGG | 0.533047 | 5.4:+18229259 | MS.gene070125:CDS |
| TCAGGAAGTGCAGTACCGAT+TGG | 0.538889 | 5.4:-18231378 | None:intergenic |
| ATATGTAGGTCGTTTCTACA+GGG | 0.546671 | 5.4:+18231048 | MS.gene070125:intron |
| TGAAGCAAAGAGAGGGCGTA+AGG | 0.548372 | 5.4:+18229385 | MS.gene070125:CDS |
| GGAAATCATGAAGCAAAGAG+AGG | 0.559557 | 5.4:+18229377 | MS.gene070125:CDS |
| TTTAAGGTAGCTGTGTCTTG+AGG | 0.565081 | 5.4:-18231294 | None:intergenic |
| CACAGCTACCTTAAATAACA+AGG | 0.577999 | 5.4:+18231302 | MS.gene070125:CDS |
| AACCCAACAAATGTATCAGT+TGG | 0.579773 | 5.4:+18231344 | MS.gene070125:CDS |
| GGCGTAAGGAAAGGGTACAT+TGG | 0.585151 | 5.4:+18229399 | MS.gene070125:CDS |
| AAGGTAGCTGTGTCTTGAGG+AGG | 0.587982 | 5.4:-18231291 | None:intergenic |
| TAAGGAAAGGGTACATTGGA+CGG | 0.593107 | 5.4:+18229403 | MS.gene070125:CDS |
| TTGGTCCATGCTACTCTCAG+GGG | 0.607107 | 5.4:-18229222 | None:intergenic |
| CAAGCTGAGTCAGTGCCAGA+AGG | 0.610015 | 5.4:+18229356 | MS.gene070125:CDS |
| GAAAGGGTACATTGGACGGA+AGG | 0.614122 | 5.4:+18229407 | MS.gene070125:CDS |
| ATCATATTGATCTAAATGAG+CGG | 0.629575 | 5.4:+18229183 | MS.gene070125:CDS |
| TGGTCCATGCTACTCTCAGG+GGG | 0.640410 | 5.4:-18229221 | None:intergenic |
| ATTAGAGTTTGGAATTGCGA+CGG | 0.644987 | 5.4:-18229288 | None:intergenic |
| GAAATCATGAAGCAAAGAGA+GGG | 0.647840 | 5.4:+18229378 | MS.gene070125:CDS |
| ATGTAGGTCGTTTCTACAGG+GGG | 0.657825 | 5.4:+18231050 | MS.gene070125:intron |
| TCATTTAGATCAATATGATG+AGG | 0.668191 | 5.4:-18229179 | None:intergenic |
| AGTACCGATTGGATAAAGCA+AGG | 0.686649 | 5.4:-18231367 | None:intergenic |
| TATGTAGGTCGTTTCTACAG+GGG | 0.695640 | 5.4:+18231049 | MS.gene070125:intron |
| AGTAGCATGGACCAACAACG+AGG | 0.722639 | 5.4:+18229230 | MS.gene070125:CDS |
| GTAGCATGGACCAACAACGA+GGG | 0.737047 | 5.4:+18229231 | MS.gene070125:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATATTATTCCTATAAAAA+GGG | - | chr5.4:18229852-18229871 | None:intergenic | 15.0% |
| !! | TGTATATTATTCCTATAAAA+AGG | - | chr5.4:18229853-18229872 | None:intergenic | 15.0% |
| !! | TTGTAGATAATCTTATATTT+AGG | + | chr5.4:18230495-18230514 | MS.gene070125:intron | 15.0% |
| !!! | AGTTTTTTTTGCTTATAATT+TGG | + | chr5.4:18230401-18230420 | MS.gene070125:intron | 15.0% |
| !!! | ATTTATATTTTGTGATATGT+AGG | + | chr5.4:18231034-18231053 | MS.gene070125:intron | 15.0% |
| !!! | GAAAAAATATTTTTGTTCAT+AGG | + | chr5.4:18230886-18230905 | MS.gene070125:intron | 15.0% |
| !!! | GTTTTTTTTGCTTATAATTT+GGG | + | chr5.4:18230402-18230421 | MS.gene070125:intron | 15.0% |
| !!! | TTGAAATTTTGTAAAATTTG+TGG | + | chr5.4:18229552-18229571 | MS.gene070125:intron | 15.0% |
| !! | ATATATATATATCACTTCCA+AGG | - | chr5.4:18229461-18229480 | None:intergenic | 20.0% |
| !! | TCTAAATACTATACAAAATG+TGG | - | chr5.4:18230637-18230656 | None:intergenic | 20.0% |
| !! | TTCCTATAAAACTTATTTCA+AGG | - | chr5.4:18230081-18230100 | None:intergenic | 20.0% |
| !!! | ATATTGATAATATTAACGAG+AGG | + | chr5.4:18230436-18230455 | MS.gene070125:intron | 20.0% |
| !!! | ATCCTTGAAATAAGTTTTAT+AGG | + | chr5.4:18230076-18230095 | MS.gene070125:intron | 20.0% |
| !!! | CTTTGCATTTAATTTTCTTT+TGG | + | chr5.4:18230296-18230315 | MS.gene070125:intron | 20.0% |
| !!! | GTCTTTTTTGCTTATAATTT+GGG | + | chr5.4:18230366-18230385 | MS.gene070125:intron | 20.0% |
| !!! | TGTCTTTTTTGCTTATAATT+TGG | + | chr5.4:18230365-18230384 | MS.gene070125:intron | 20.0% |
| !!! | TTTTTTCTTATAATATGGGA+CGG | - | chr5.4:18229997-18230016 | None:intergenic | 20.0% |
| ! | AAGTATATTCAATCTATCCT+TGG | + | chr5.4:18229441-18229460 | MS.gene070125:intron | 25.0% |
| ! | ACGTTATTATCATTAGAGTT+TGG | - | chr5.4:18229302-18229321 | None:intergenic | 25.0% |
| ! | ATATACTTAATAGTCAACAG+TGG | + | chr5.4:18229582-18229601 | MS.gene070125:intron | 25.0% |
| ! | ATCATATTGATCTAAATGAG+CGG | + | chr5.4:18229183-18229202 | MS.gene070125:CDS | 25.0% |
| ! | ATTATTCCTATAAAAAGGGA+CGG | - | chr5.4:18229848-18229867 | None:intergenic | 25.0% |
| ! | GTGCTTAGTAAAATATAAAG+AGG | - | chr5.4:18229760-18229779 | None:intergenic | 25.0% |
| ! | TATACTTAATAGTCAACAGT+GGG | + | chr5.4:18229583-18229602 | MS.gene070125:intron | 25.0% |
| ! | TCACGTATATACATATCAAT+TGG | - | chr5.4:18230840-18230859 | None:intergenic | 25.0% |
| ! | TCATTTAGATCAATATGATG+AGG | - | chr5.4:18229182-18229201 | None:intergenic | 25.0% |
| !! | AATAAGAACTTTTGATGTGA+TGG | - | chr5.4:18230601-18230620 | None:intergenic | 25.0% |
| !! | TTTCTTCTTCTCTATTTCTT+TGG | - | chr5.4:18231190-18231209 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATTTGGGA+CGG | + | chr5.4:18230370-18230389 | MS.gene070125:intron | 25.0% |
| !!! | ATTTCATGTTGTTTTTCAAG+AGG | - | chr5.4:18231270-18231289 | None:intergenic | 25.0% |
| !!! | GTAAAGTAGTCTTGTAAAAA+GGG | + | chr5.4:18230532-18230551 | MS.gene070125:intron | 25.0% |
| !!! | TAATGTGTCATTGTTGTTTA+AGG | - | chr5.4:18231238-18231257 | None:intergenic | 25.0% |
| !!! | TGTAAAGTAGTCTTGTAAAA+AGG | + | chr5.4:18230531-18230550 | MS.gene070125:intron | 25.0% |
| !!! | TTTCATGTTGTTTTTCAAGA+GGG | - | chr5.4:18231269-18231288 | None:intergenic | 25.0% |
| AAAATCTCCAATCTAAACCT+AGG | + | chr5.4:18230788-18230807 | MS.gene070125:intron | 30.0% | |
| TCTCTATGCAAAGATAATCT+TGG | + | chr5.4:18229669-18229688 | MS.gene070125:intron | 30.0% | |
| ! | TACATATCAATTGGTAGCTA+AGG | - | chr5.4:18230831-18230850 | None:intergenic | 30.0% |
| ! | TTCTCAAGTTTGTTCATATC+AGG | - | chr5.4:18231399-18231418 | None:intergenic | 30.0% |
| !! | GTCATTGTCCTTGTTATTTA+AGG | - | chr5.4:18231313-18231332 | None:intergenic | 30.0% |
| !!! | TTTTTTACCTCTCACTTTAC+TGG | - | chr5.4:18230939-18230958 | None:intergenic | 30.0% |
| AACCCAACAAATGTATCAGT+TGG | + | chr5.4:18231344-18231363 | MS.gene070125:CDS | 35.0% | |
| ACTAGCTATGTGATGACAAT+TGG | - | chr5.4:18230708-18230727 | None:intergenic | 35.0% | |
| ATATGTAGGTCGTTTCTACA+GGG | + | chr5.4:18231048-18231067 | MS.gene070125:intron | 35.0% | |
| ATCTAATGACTAGACACTCA+AGG | + | chr5.4:18230753-18230772 | MS.gene070125:intron | 35.0% | |
| CACAGCTACCTTAAATAACA+AGG | + | chr5.4:18231302-18231321 | MS.gene070125:CDS | 35.0% | |
| CTTGTGTTGCAAACTACTTT+GGG | + | chr5.4:18230200-18230219 | MS.gene070125:intron | 35.0% | |
| GAAATCATGAAGCAAAGAGA+GGG | + | chr5.4:18229378-18229397 | MS.gene070125:CDS | 35.0% | |
| GCAAAGATAATCTTGGAGTA+AGG | + | chr5.4:18229676-18229695 | MS.gene070125:intron | 35.0% | |
| TCTAATGACTAGACACTCAA+GGG | + | chr5.4:18230754-18230773 | MS.gene070125:intron | 35.0% | |
| TCTTGTGTTGCAAACTACTT+TGG | + | chr5.4:18230199-18230218 | MS.gene070125:intron | 35.0% | |
| TTCTTATAATATGGGACGGA+GGG | - | chr5.4:18229993-18230012 | None:intergenic | 35.0% | |
| TTGAATACCAGTAAAGTGAG+AGG | + | chr5.4:18230929-18230948 | MS.gene070125:intron | 35.0% | |
| TTTCTTATAATATGGGACGG+AGG | - | chr5.4:18229994-18230013 | None:intergenic | 35.0% | |
| TTTGCTTCATGATTTCCTTC+TGG | - | chr5.4:18229374-18229393 | None:intergenic | 35.0% | |
| ! | AGAACTTTTGATGTGATGGT+TGG | - | chr5.4:18230597-18230616 | None:intergenic | 35.0% |
| ! | ATTAGAGTTTGGAATTGCGA+CGG | - | chr5.4:18229291-18229310 | None:intergenic | 35.0% |
| ! | GCAAGTGTTTGCATTGTTTT+GGG | + | chr5.4:18230965-18230984 | MS.gene070125:intron | 35.0% |
| ! | GGTTTAGATTGGAGATTTTC+CGG | - | chr5.4:18230787-18230806 | None:intergenic | 35.0% |
| ! | TCTCTATTTCTTTGGCAGTT+TGG | - | chr5.4:18231182-18231201 | None:intergenic | 35.0% |
| ! | TGCAAGTGTTTGCATTGTTT+TGG | + | chr5.4:18230964-18230983 | MS.gene070125:intron | 35.0% |
| !! | AGTAGTCTTGTAAAAAGGGA+CGG | + | chr5.4:18230536-18230555 | MS.gene070125:intron | 35.0% |
| ACATGTGCCTAGGTTTAGAT+TGG | - | chr5.4:18230798-18230817 | None:intergenic | 40.0% | |
| AGGCCAACTGATACATTTGT+TGG | - | chr5.4:18231350-18231369 | None:intergenic | 40.0% | |
| ATTCCTATAAAAAGGGACGG+AGG | - | chr5.4:18229845-18229864 | None:intergenic | 40.0% | |
| GATATGTAGGTCGTTTCTAC+AGG | + | chr5.4:18231047-18231066 | MS.gene070125:intron | 40.0% | |
| GCATGACTAGCAATTTGAGT+TGG | - | chr5.4:18231138-18231157 | None:intergenic | 40.0% | |
| GGAAATCATGAAGCAAAGAG+AGG | + | chr5.4:18229377-18229396 | MS.gene070125:CDS | 40.0% | |
| GGCCAACTGATACATTTGTT+GGG | - | chr5.4:18231349-18231368 | None:intergenic | 40.0% | |
| TATGTAGGTCGTTTCTACAG+GGG | + | chr5.4:18231049-18231068 | MS.gene070125:intron | 40.0% | |
| TTCCTATAAAAAGGGACGGA+GGG | - | chr5.4:18229844-18229863 | None:intergenic | 40.0% | |
| ! | CGGAGGGAGTATATTGAAAT+AGG | - | chr5.4:18229977-18229996 | None:intergenic | 40.0% |
| ! | CTATTTCTTTGGCAGTTTGG+TGG | - | chr5.4:18231179-18231198 | None:intergenic | 40.0% |
| ! | TAAGGAAAGGGTACATTGGA+CGG | + | chr5.4:18229403-18229422 | MS.gene070125:CDS | 40.0% |
| ! | TGCTTATAATTTGGGACGGA+GGG | + | chr5.4:18230410-18230429 | MS.gene070125:intron | 40.0% |
| ! | TTGCTTATAATTTGGGACGG+AGG | + | chr5.4:18230409-18230428 | MS.gene070125:intron | 40.0% |
| ! | TTTAAGGTAGCTGTGTCTTG+AGG | - | chr5.4:18231297-18231316 | None:intergenic | 40.0% |
| !! | AGTACCGATTGGATAAAGCA+AGG | - | chr5.4:18231370-18231389 | None:intergenic | 40.0% |
| !! | TTGGCCTTGCTTTATCCAAT+CGG | + | chr5.4:18231363-18231382 | MS.gene070125:CDS | 40.0% |
| !!! | GGAGTATCAGTTTTGGAGTA+AGG | - | chr5.4:18229823-18229842 | None:intergenic | 40.0% |
| AAAAACATGGTAGGGGACGT+TGG | + | chr5.4:18231076-18231095 | MS.gene070125:CDS | 45.0% | |
| AATGACTAGACACTCAAGGG+TGG | + | chr5.4:18230757-18230776 | MS.gene070125:intron | 45.0% | |
| ACTTCTCTCCGAATAGAGTG+GGG | + | chr5.4:18229701-18229720 | MS.gene070125:intron | 45.0% | |
| AGGGGGTGAAAAAACATGGT+AGG | + | chr5.4:18231067-18231086 | MS.gene070125:CDS | 45.0% | |
| ATGTAGGTCGTTTCTACAGG+GGG | + | chr5.4:18231050-18231069 | MS.gene070125:intron | 45.0% | |
| CAAGTCATCCCCACTCTATT+CGG | - | chr5.4:18229712-18229731 | None:intergenic | 45.0% | |
| CTACAGGGGGTGAAAAAACA+TGG | + | chr5.4:18231063-18231082 | MS.gene070125:CDS | 45.0% | |
| GACTTCTCTCCGAATAGAGT+GGG | + | chr5.4:18229700-18229719 | MS.gene070125:intron | 45.0% | |
| GGGGGTGAAAAAACATGGTA+GGG | + | chr5.4:18231068-18231087 | MS.gene070125:CDS | 45.0% | |
| GGGGTGAAAAAACATGGTAG+GGG | + | chr5.4:18231069-18231088 | MS.gene070125:CDS | 45.0% | |
| TGACACTGATGTCGTTGAGT+CGG | + | chr5.4:18229259-18229278 | MS.gene070125:CDS | 45.0% | |
| TGACTTCTCTCCGAATAGAG+TGG | + | chr5.4:18229699-18229718 | MS.gene070125:intron | 45.0% | |
| TGTCAAGTATCCCTCGTTGT+TGG | - | chr5.4:18229244-18229263 | None:intergenic | 45.0% | |
| ! | AAAGAGAGGGCGTAAGGAAA+GGG | + | chr5.4:18229391-18229410 | MS.gene070125:CDS | 45.0% |
| ! | AGTCTTGTAAAAAGGGACGG+AGG | + | chr5.4:18230539-18230558 | MS.gene070125:intron | 45.0% |
| ! | CAATTGGTAGCTAAGGACGT+TGG | - | chr5.4:18230824-18230843 | None:intergenic | 45.0% |
| ! | GCGCAACTTGTTCAACTTGT+TGG | + | chr5.4:18231422-18231441 | MS.gene070125:CDS | 45.0% |
| !!! | ATATTTTTTAATTTCTATTT+TGG | + | chr5.4:18229477-18229496 | MS.gene070125:intron | 5.0% |
| !!! | ATTTTTTTTTTCTTATAATA+TGG | - | chr5.4:18230002-18230021 | None:intergenic | 5.0% |
| !!! | TATTTTTTAATTTCTATTTT+GGG | + | chr5.4:18229478-18229497 | MS.gene070125:intron | 5.0% |
| !!! | TTTTTTTTTTCTTATAATAT+GGG | - | chr5.4:18230001-18230020 | None:intergenic | 5.0% |
| AAGGTAGCTGTGTCTTGAGG+AGG | - | chr5.4:18231294-18231313 | None:intergenic | 50.0% | |
| AGTAGCATGGACCAACAACG+AGG | + | chr5.4:18229230-18229249 | MS.gene070125:CDS | 50.0% | |
| GACACTGATGTCGTTGAGTC+GGG | + | chr5.4:18229260-18229279 | MS.gene070125:CDS | 50.0% | |
| GTAGCATGGACCAACAACGA+GGG | + | chr5.4:18229231-18229250 | MS.gene070125:CDS | 50.0% | |
| GTTGGTCCATGCTACTCTCA+GGG | - | chr5.4:18229226-18229245 | None:intergenic | 50.0% | |
| TGTTGGTCCATGCTACTCTC+AGG | - | chr5.4:18229227-18229246 | None:intergenic | 50.0% | |
| TTGGTCCATGCTACTCTCAG+GGG | - | chr5.4:18229225-18229244 | None:intergenic | 50.0% | |
| ! | ACGTTGGTCTACATGTGCCT+AGG | - | chr5.4:18230808-18230827 | None:intergenic | 50.0% |
| ! | CAAAGAGAGGGCGTAAGGAA+AGG | + | chr5.4:18229390-18229409 | MS.gene070125:CDS | 50.0% |
| ! | CTCCCTCCGTCCCTTTTTAT+AGG | + | chr5.4:18229839-18229858 | MS.gene070125:intron | 50.0% |
| ! | GAAAGGGTACATTGGACGGA+AGG | + | chr5.4:18229407-18229426 | MS.gene070125:CDS | 50.0% |
| ! | GGCGTAAGGAAAGGGTACAT+TGG | + | chr5.4:18229399-18229418 | MS.gene070125:CDS | 50.0% |
| ! | TGAAGCAAAGAGAGGGCGTA+AGG | + | chr5.4:18229385-18229404 | MS.gene070125:CDS | 50.0% |
| !! | TCAGGAAGTGCAGTACCGAT+TGG | - | chr5.4:18231381-18231400 | None:intergenic | 50.0% |
| !!! | GACGGAGGGAGTATCAGTTT+TGG | - | chr5.4:18229830-18229849 | None:intergenic | 50.0% |
| AGATCCCCCTGAGAGTAGCA+TGG | + | chr5.4:18229217-18229236 | MS.gene070125:CDS | 55.0% | |
| CAAGCTGAGTCAGTGCCAGA+AGG | + | chr5.4:18229356-18229375 | MS.gene070125:CDS | 55.0% | |
| GACACTCAAGGGTGGAGAAC+CGG | + | chr5.4:18230765-18230784 | MS.gene070125:intron | 55.0% | |
| TGGTCCATGCTACTCTCAGG+GGG | - | chr5.4:18229224-18229243 | None:intergenic | 55.0% | |
| ! | GAGTTTGGAATTGCGACGGC+AGG | - | chr5.4:18229287-18229306 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 18229152 | 18231458 | 18229152 | ID=MS.gene070125 |
| chr5.4 | mRNA | 18229152 | 18231458 | 18229152 | ID=MS.gene070125.t1;Parent=MS.gene070125 |
| chr5.4 | exon | 18229152 | 18229438 | 18229152 | ID=MS.gene070125.t1.exon1;Parent=MS.gene070125.t1 |
| chr5.4 | CDS | 18229152 | 18229438 | 18229152 | ID=cds.MS.gene070125.t1;Parent=MS.gene070125.t1 |
| chr5.4 | exon | 18231056 | 18231458 | 18231056 | ID=MS.gene070125.t1.exon2;Parent=MS.gene070125.t1 |
| chr5.4 | CDS | 18231056 | 18231458 | 18231056 | ID=cds.MS.gene070125.t1;Parent=MS.gene070125.t1 |
| Gene Sequence |
| Protein sequence |
