Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070126.t1 | XP_003612667.1 | 91.2 | 238 | 16 | 3 | 1 | 238 | 1 | 233 | 7.40E-91 | 343.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070126.t1 | Q8S9H7 | 50.0 | 108 | 45 | 3 | 98 | 205 | 134 | 232 | 1.6e-17 | 91.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070126.t1 | G7K885 | 91.2 | 238 | 16 | 3 | 1 | 238 | 1 | 233 | 5.3e-91 | 343.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene070126.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070126.t1 | MTR_5g027570 | 91.597 | 238 | 15 | 3 | 1 | 238 | 1 | 233 | 2.14e-150 | 418 |
| MS.gene070126.t1 | MTR_5g088060 | 58.741 | 286 | 55 | 7 | 1 | 236 | 189 | 461 | 3.97e-91 | 276 |
| MS.gene070126.t1 | MTR_5g488160 | 58.741 | 286 | 55 | 7 | 1 | 236 | 189 | 461 | 3.97e-91 | 276 |
| MS.gene070126.t1 | MTR_5g088010 | 57.977 | 257 | 51 | 4 | 29 | 236 | 1 | 249 | 9.22e-86 | 255 |
| MS.gene070126.t1 | MTR_5g027550 | 59.677 | 248 | 69 | 5 | 1 | 236 | 1 | 229 | 9.69e-86 | 254 |
| MS.gene070126.t1 | MTR_1g111830 | 41.781 | 146 | 67 | 4 | 64 | 205 | 89 | 220 | 7.17e-26 | 101 |
| MS.gene070126.t1 | MTR_5g081860 | 48.246 | 114 | 47 | 2 | 92 | 194 | 121 | 233 | 4.43e-24 | 97.4 |
| MS.gene070126.t1 | MTR_4g111975 | 42.241 | 116 | 61 | 3 | 92 | 207 | 134 | 243 | 1.10e-23 | 97.1 |
| MS.gene070126.t1 | MTR_7g067080 | 44.882 | 127 | 57 | 4 | 85 | 209 | 129 | 244 | 2.10e-23 | 96.3 |
| MS.gene070126.t1 | MTR_8g063600 | 34.328 | 201 | 100 | 6 | 36 | 219 | 56 | 241 | 2.24e-23 | 95.9 |
| MS.gene070126.t1 | MTR_3g462790 | 58.025 | 81 | 31 | 2 | 86 | 165 | 137 | 215 | 7.99e-23 | 95.1 |
| MS.gene070126.t1 | MTR_5g069710 | 58.025 | 81 | 31 | 2 | 86 | 165 | 122 | 200 | 1.39e-22 | 94.0 |
| MS.gene070126.t1 | MTR_4g100630 | 38.983 | 118 | 66 | 3 | 44 | 161 | 47 | 158 | 2.24e-22 | 94.0 |
| MS.gene070126.t1 | MTR_8g063870 | 58.108 | 74 | 31 | 0 | 97 | 170 | 93 | 166 | 4.31e-22 | 92.0 |
| MS.gene070126.t1 | MTR_2g100930 | 54.167 | 72 | 31 | 1 | 92 | 163 | 105 | 174 | 4.29e-21 | 90.5 |
| MS.gene070126.t1 | MTR_3g104370 | 47.727 | 88 | 41 | 2 | 86 | 172 | 85 | 168 | 1.66e-20 | 87.0 |
| MS.gene070126.t1 | MTR_6g092540 | 54.286 | 70 | 30 | 1 | 92 | 161 | 93 | 160 | 1.79e-19 | 85.1 |
| MS.gene070126.t1 | MTR_1g048660 | 54.286 | 70 | 30 | 1 | 98 | 167 | 14 | 81 | 3.07e-19 | 79.7 |
| MS.gene070126.t1 | MTR_8g101650 | 55.714 | 70 | 28 | 2 | 92 | 161 | 101 | 167 | 1.14e-18 | 82.8 |
| MS.gene070126.t1 | MTR_4g107230 | 57.377 | 61 | 26 | 0 | 82 | 142 | 70 | 130 | 2.55e-18 | 82.0 |
| MS.gene070126.t1 | MTR_5g037080 | 64.407 | 59 | 17 | 1 | 85 | 143 | 95 | 149 | 2.93e-18 | 82.4 |
| MS.gene070126.t1 | MTR_4g015130 | 55.932 | 59 | 24 | 1 | 106 | 164 | 3 | 59 | 3.02e-16 | 71.6 |
| MS.gene070126.t1 | MTR_5g075760 | 37.419 | 155 | 77 | 6 | 30 | 183 | 53 | 188 | 3.99e-16 | 74.7 |
| MS.gene070126.t1 | MTR_1g083180 | 35.484 | 124 | 74 | 3 | 52 | 170 | 13 | 135 | 4.70e-16 | 73.9 |
| MS.gene070126.t1 | MTR_0036s0260 | 40.506 | 79 | 45 | 1 | 96 | 174 | 28 | 104 | 9.89e-16 | 73.6 |
| MS.gene070126.t1 | MTR_1g033620 | 54.839 | 62 | 26 | 1 | 111 | 172 | 20 | 79 | 1.13e-15 | 74.3 |
| MS.gene070126.t1 | MTR_5g075790 | 39.024 | 123 | 65 | 4 | 66 | 183 | 79 | 196 | 1.62e-15 | 73.2 |
| MS.gene070126.t1 | MTR_2g090305 | 41.772 | 79 | 44 | 1 | 96 | 174 | 28 | 104 | 3.67e-14 | 68.9 |
| MS.gene070126.t1 | MTR_8g072990 | 44.776 | 67 | 37 | 0 | 91 | 157 | 95 | 161 | 4.30e-14 | 69.7 |
| MS.gene070126.t1 | MTR_6g043490 | 42.857 | 77 | 41 | 1 | 93 | 166 | 104 | 180 | 1.98e-13 | 67.8 |
| MS.gene070126.t1 | MTR_3g070110 | 48.750 | 80 | 33 | 3 | 97 | 169 | 96 | 174 | 2.38e-13 | 67.4 |
| MS.gene070126.t1 | MTR_6g043480 | 44.118 | 68 | 35 | 1 | 91 | 155 | 102 | 169 | 7.79e-13 | 66.2 |
| MS.gene070126.t1 | MTR_8g073050 | 38.356 | 73 | 45 | 0 | 91 | 163 | 98 | 170 | 1.74e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070126.t1 | AT5G08520 | 50.000 | 100 | 48 | 1 | 73 | 172 | 95 | 192 | 7.69e-26 | 102 |
| MS.gene070126.t1 | AT5G23650 | 38.650 | 163 | 87 | 4 | 56 | 218 | 83 | 232 | 3.43e-24 | 99.0 |
| MS.gene070126.t1 | AT5G04760 | 53.012 | 83 | 37 | 1 | 81 | 163 | 84 | 164 | 8.35e-24 | 95.5 |
| MS.gene070126.t1 | AT5G58900 | 61.333 | 75 | 26 | 2 | 92 | 165 | 137 | 209 | 2.60e-23 | 95.9 |
| MS.gene070126.t1 | AT3G10580 | 31.579 | 190 | 101 | 5 | 21 | 207 | 39 | 202 | 2.84e-23 | 95.1 |
| MS.gene070126.t1 | AT1G49010 | 51.163 | 86 | 39 | 2 | 88 | 172 | 126 | 209 | 3.54e-23 | 95.9 |
| MS.gene070126.t1 | AT3G10580 | 40.000 | 125 | 67 | 3 | 85 | 207 | 84 | 202 | 6.74e-23 | 94.7 |
| MS.gene070126.t1 | AT2G38090 | 39.583 | 144 | 78 | 4 | 29 | 165 | 68 | 209 | 2.51e-22 | 93.2 |
| MS.gene070126.t1 | AT3G11280 | 41.667 | 132 | 65 | 4 | 84 | 207 | 115 | 242 | 1.89e-21 | 90.1 |
| MS.gene070126.t1 | AT3G11280 | 41.667 | 132 | 65 | 4 | 84 | 207 | 115 | 242 | 1.89e-21 | 90.1 |
| MS.gene070126.t1 | AT5G61620 | 46.154 | 130 | 46 | 6 | 85 | 206 | 101 | 214 | 3.90e-21 | 90.5 |
| MS.gene070126.t1 | AT5G47390 | 46.465 | 99 | 46 | 3 | 85 | 182 | 89 | 181 | 4.67e-21 | 90.9 |
| MS.gene070126.t1 | AT5G01200 | 57.333 | 75 | 29 | 2 | 92 | 165 | 142 | 214 | 8.71e-21 | 88.6 |
| MS.gene070126.t1 | AT5G05790 | 52.222 | 90 | 33 | 3 | 84 | 167 | 119 | 204 | 1.01e-19 | 85.9 |
| MS.gene070126.t1 | AT5G05790 | 52.222 | 90 | 33 | 3 | 84 | 167 | 119 | 204 | 1.01e-19 | 85.9 |
| MS.gene070126.t1 | AT5G56840 | 52.857 | 70 | 32 | 1 | 92 | 161 | 87 | 155 | 7.46e-19 | 82.8 |
| MS.gene070126.t1 | AT1G19000 | 53.247 | 77 | 30 | 2 | 66 | 142 | 78 | 148 | 2.45e-18 | 82.0 |
| MS.gene070126.t1 | AT1G19000 | 53.247 | 77 | 30 | 2 | 66 | 142 | 78 | 148 | 2.45e-18 | 82.0 |
| MS.gene070126.t1 | AT3G16350 | 54.054 | 74 | 32 | 2 | 71 | 143 | 112 | 184 | 3.01e-18 | 83.2 |
| MS.gene070126.t1 | AT1G70000 | 62.069 | 58 | 18 | 1 | 86 | 143 | 92 | 145 | 7.40e-18 | 80.5 |
| MS.gene070126.t1 | AT1G70000 | 62.069 | 58 | 18 | 1 | 86 | 143 | 92 | 145 | 7.40e-18 | 80.5 |
| MS.gene070126.t1 | AT4G09450 | 50.667 | 75 | 35 | 1 | 91 | 165 | 86 | 158 | 5.52e-17 | 77.0 |
| MS.gene070126.t1 | AT1G74840 | 56.250 | 64 | 28 | 0 | 79 | 142 | 79 | 142 | 5.84e-17 | 77.8 |
| MS.gene070126.t1 | AT1G74840 | 56.250 | 64 | 28 | 0 | 79 | 142 | 79 | 142 | 6.18e-17 | 78.2 |
| MS.gene070126.t1 | AT3G10590 | 46.429 | 84 | 42 | 1 | 81 | 164 | 96 | 176 | 4.78e-15 | 71.6 |
Find 38 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTATATCTTTCACATTT+TGG | 0.095253 | 5.4:-18241504 | None:intergenic |
| TGAGAAGATGCGCGACTTAT+TGG | 0.189075 | 5.4:+18241747 | MS.gene070126:CDS |
| TGTGATGTATAGGTTGTTTC+TGG | 0.210646 | 5.4:+18241372 | MS.gene070126:intron |
| TCCAATCGGTTCTACAATTC+CGG | 0.270420 | 5.4:+18241711 | MS.gene070126:CDS |
| TTCTCAAGTTTCTCTATATC+CGG | 0.389268 | 5.4:-18241730 | None:intergenic |
| GCATGGCTAGCTATTTGAAT+TGG | 0.389834 | 5.4:-18241463 | None:intergenic |
| TTGTGCTTGCTTTGTCCAAT+CGG | 0.442636 | 5.4:+18241697 | MS.gene070126:CDS |
| AGATATTTCAAAAGAATTTG+TGG | 0.448838 | 5.4:+18241429 | MS.gene070126:CDS |
| TGGAAGGAATCTCATCTTGT+TGG | 0.451198 | 5.4:-18241600 | None:intergenic |
| CAAAGAGAGGGCGTAGGGAA+AGG | 0.497543 | 5.4:+18240526 | MS.gene070126:CDS |
| AAAGAGAGGGCGTAGGGAAA+GGG | 0.499642 | 5.4:+18240527 | MS.gene070126:CDS |
| ATGTGAAAGATATAGAGAAA+AGG | 0.501033 | 5.4:+18241509 | MS.gene070126:CDS |
| ATCATTAGAGTTTAGAATTG+CGG | 0.501416 | 5.4:-18240406 | None:intergenic |
| GATACAAGCTTAAACAAGAA+TGG | 0.522087 | 5.4:+18241553 | MS.gene070126:CDS |
| TTGTTCCATGCTATTCTCAG+AGG | 0.540101 | 5.4:-18240334 | None:intergenic |
| TGTTCCATGCTATTCTCAGA+GGG | 0.542367 | 5.4:-18240333 | None:intergenic |
| ATGTATAGGTTGTTTCTGGA+GGG | 0.542704 | 5.4:+18241376 | MS.gene070126:intron |
| GTCTGCTGCATTCCTTGAGG+AGG | 0.549374 | 5.4:-18241643 | None:intergenic |
| TAGGGAAAGGGTACATTGGA+CGG | 0.560493 | 5.4:+18240539 | MS.gene070126:CDS |
| TCCGGAATTGTAGAACCGAT+TGG | 0.561152 | 5.4:-18241712 | None:intergenic |
| TGTATAGGTTGTTTCTGGAG+GGG | 0.562950 | 5.4:+18241377 | MS.gene070126:intron |
| GTGAAGCAAAGAGAGGGCGT+AGG | 0.568855 | 5.4:+18240520 | MS.gene070126:CDS |
| CAAAATGAGACTCCTCCTCA+AGG | 0.570138 | 5.4:+18241631 | MS.gene070126:CDS |
| GGCGTAGGGAAAGGGTACAT+TGG | 0.572735 | 5.4:+18240535 | MS.gene070126:CDS |
| GGACAAAGCAAGCACAACAT+AGG | 0.584982 | 5.4:-18241691 | None:intergenic |
| CAAGCTGAGTCAGTACAAGA+AGG | 0.586916 | 5.4:+18240492 | MS.gene070126:CDS |
| GAAAGGGTACATTGGACGGA+AGG | 0.588233 | 5.4:+18240543 | MS.gene070126:CDS |
| TGAAGCAAAGAGAGGGCGTA+GGG | 0.595570 | 5.4:+18240521 | MS.gene070126:CDS |
| GAGTCAGAGTCAGTATCTGA+AGG | 0.599718 | 5.4:+18240447 | MS.gene070126:CDS |
| GATGTATAGGTTGTTTCTGG+AGG | 0.607647 | 5.4:+18241375 | MS.gene070126:intron |
| CGATACTGATGTCATTGAGT+CGG | 0.609060 | 5.4:+18240374 | MS.gene070126:CDS |
| AGATCCCTCTGAGAATAGCA+TGG | 0.623635 | 5.4:+18240329 | MS.gene070126:CDS |
| ATCATATCGATTTAAATGAG+CGG | 0.624082 | 5.4:+18240295 | MS.gene070126:CDS |
| TCATTTAAATCGATATGATG+AGG | 0.628741 | 5.4:-18240291 | None:intergenic |
| TGTGTCTGCTGCATTCCTTG+AGG | 0.629158 | 5.4:-18241646 | None:intergenic |
| GGAAGTCGTGAAGCAAAGAG+AGG | 0.632062 | 5.4:+18240513 | MS.gene070126:CDS |
| GAAGTCGTGAAGCAAAGAGA+GGG | 0.647998 | 5.4:+18240514 | MS.gene070126:CDS |
| ATTAGAGTTTAGAATTGCGG+CGG | 0.650972 | 5.4:-18240403 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAATATATATATCAAT+TGG | - | chr5.4:18241067-18241086 | None:intergenic | 10.0% |
| !! | TAGAATTGAAAAAAAAAAAA+TGG | - | chr5.4:18240867-18240886 | None:intergenic | 10.0% |
| !!! | TACAAATAAAAATTTTGTTT+TGG | + | chr5.4:18240733-18240752 | MS.gene070126:intron | 10.0% |
| !!! | TTTTTTTTCAATTCTATTTT+AGG | + | chr5.4:18240871-18240890 | MS.gene070126:intron | 10.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | + | chr5.4:18241429-18241448 | MS.gene070126:CDS | 20.0% |
| !! | ATTCTTTGTCTCTAATAAAA+TGG | - | chr5.4:18240636-18240655 | None:intergenic | 20.0% |
| !!! | TTCTATAATTTGTGATGTAT+AGG | + | chr5.4:18241362-18241381 | MS.gene070126:intron | 20.0% |
| ! | ACAAAGAATGCTTACATATA+GGG | + | chr5.4:18240647-18240666 | MS.gene070126:intron | 25.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | + | chr5.4:18241194-18241213 | MS.gene070126:intron | 25.0% |
| ! | ATAAAATGGTGTTTACACAT+AGG | - | chr5.4:18240622-18240641 | None:intergenic | 25.0% |
| ! | ATAAATTCGTAGTTATGTGA+TGG | - | chr5.4:18240943-18240962 | None:intergenic | 25.0% |
| ! | ATGTGAAAGATATAGAGAAA+AGG | + | chr5.4:18241509-18241528 | MS.gene070126:CDS | 25.0% |
| ! | TAAAATGGTGTTTACACATA+GGG | - | chr5.4:18240621-18240640 | None:intergenic | 25.0% |
| ! | TAAATTCGTAGTTATGTGAT+GGG | - | chr5.4:18240942-18240961 | None:intergenic | 25.0% |
| ! | TCATTTAAATCGATATGATG+AGG | - | chr5.4:18240294-18240313 | None:intergenic | 25.0% |
| !! | ATCATTAGAGTTTAGAATTG+CGG | - | chr5.4:18240409-18240428 | None:intergenic | 25.0% |
| !! | TATATCAATTGGTAGTTACA+AGG | - | chr5.4:18241056-18241075 | None:intergenic | 25.0% |
| !! | TCTCTATATCTTTCACATTT+TGG | - | chr5.4:18241507-18241526 | None:intergenic | 25.0% |
| !!! | ATCATATCGATTTAAATGAG+CGG | + | chr5.4:18240295-18240314 | MS.gene070126:CDS | 25.0% |
| !!! | TTGGTGGATAAAGTATTTTT+GGG | - | chr5.4:18241488-18241507 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGTATTTT+TGG | - | chr5.4:18241489-18241508 | None:intergenic | 25.0% |
| GACAAAGAATGCTTACATAT+AGG | + | chr5.4:18240646-18240665 | MS.gene070126:intron | 30.0% | |
| GATACAAGCTTAAACAAGAA+TGG | + | chr5.4:18241553-18241572 | MS.gene070126:CDS | 30.0% | |
| GTAAGTATTCAATCTATCCT+TGG | + | chr5.4:18240575-18240594 | MS.gene070126:intron | 30.0% | |
| TTCTCAAGTTTCTCTATATC+CGG | - | chr5.4:18241733-18241752 | None:intergenic | 30.0% | |
| ! | CTATATCTTTCACATTTTGG+TGG | - | chr5.4:18241504-18241523 | None:intergenic | 30.0% |
| ! | TCAAGTGTTTGCATTGTTTT+GGG | + | chr5.4:18241255-18241274 | MS.gene070126:intron | 30.0% |
| ! | TTCAAGTGTTTGCATTGTTT+TGG | + | chr5.4:18241254-18241273 | MS.gene070126:intron | 30.0% |
| AAAAATATGGTAAGGGACGT+TGG | + | chr5.4:18241404-18241423 | MS.gene070126:CDS | 35.0% | |
| AATGTTAACTAGTGTCCCAA+GGG | - | chr5.4:18240842-18240861 | None:intergenic | 35.0% | |
| AGAATGCTTACATATAGGGA+CGG | + | chr5.4:18240651-18240670 | MS.gene070126:intron | 35.0% | |
| GGGCTAGAAAAATATGGTAA+GGG | + | chr5.4:18241397-18241416 | MS.gene070126:CDS | 35.0% | |
| TTCTAGGTTGCATATCAACA+AGG | + | chr5.4:18241210-18241229 | MS.gene070126:intron | 35.0% | |
| ! | ATTAGAGTTTAGAATTGCGG+CGG | - | chr5.4:18240406-18240425 | None:intergenic | 35.0% |
| ! | TGTGATGTATAGGTTGTTTC+TGG | + | chr5.4:18241372-18241391 | MS.gene070126:intron | 35.0% |
| !! | ATGTATAGGTTGTTTCTGGA+GGG | + | chr5.4:18241376-18241395 | MS.gene070126:intron | 35.0% |
| !!! | ACGGAGGGAGTATATTTTTT+GGG | + | chr5.4:18240670-18240689 | MS.gene070126:intron | 35.0% |
| !!! | GGATAAAGTATTTTTGGGCA+TGG | - | chr5.4:18241483-18241502 | None:intergenic | 35.0% |
| AATGCTTAACCAATGCCCTT+GGG | + | chr5.4:18240824-18240843 | MS.gene070126:intron | 40.0% | |
| AGTGACTAGACACTCAACTT+TGG | + | chr5.4:18240987-18241006 | MS.gene070126:intron | 40.0% | |
| ATGGTGTTTACACATAGGGA+CGG | - | chr5.4:18240617-18240636 | None:intergenic | 40.0% | |
| ATTCCTTAACCATTGCGCTA+AGG | - | chr5.4:18240712-18240731 | None:intergenic | 40.0% | |
| CAAGGATGTTGATCTACATG+TGG | - | chr5.4:18241038-18241057 | None:intergenic | 40.0% | |
| CGATACTGATGTCATTGAGT+CGG | + | chr5.4:18240374-18240393 | MS.gene070126:CDS | 40.0% | |
| GAATGTTAACTAGTGTCCCA+AGG | - | chr5.4:18240843-18240862 | None:intergenic | 40.0% | |
| GGGGCTAGAAAAATATGGTA+AGG | + | chr5.4:18241396-18241415 | MS.gene070126:CDS | 40.0% | |
| TGGAAGGAATCTCATCTTGT+TGG | - | chr5.4:18241603-18241622 | None:intergenic | 40.0% | |
| TGTTCCATGCTATTCTCAGA+GGG | - | chr5.4:18240336-18240355 | None:intergenic | 40.0% | |
| TTCCTTAACCATTGCGCTAA+GGG | - | chr5.4:18240711-18240730 | None:intergenic | 40.0% | |
| TTGTGCTTGCTTTGTCCAAT+CGG | + | chr5.4:18241697-18241716 | MS.gene070126:CDS | 40.0% | |
| TTGTTCCATGCTATTCTCAG+AGG | - | chr5.4:18240337-18240356 | None:intergenic | 40.0% | |
| ! | AGTCTCATTTTGCTGCTCAA+TGG | - | chr5.4:18241623-18241642 | None:intergenic | 40.0% |
| ! | GAGGGAGTATATAACTTCCA+AGG | - | chr5.4:18240595-18240614 | None:intergenic | 40.0% |
| ! | GCATGGCTAGCTATTTGAAT+TGG | - | chr5.4:18241466-18241485 | None:intergenic | 40.0% |
| ! | TCATTTTGCTGCTCAATGGA+AGG | - | chr5.4:18241619-18241638 | None:intergenic | 40.0% |
| ! | TCCAATCGGTTCTACAATTC+CGG | + | chr5.4:18241711-18241730 | MS.gene070126:CDS | 40.0% |
| !! | GATGTATAGGTTGTTTCTGG+AGG | + | chr5.4:18241375-18241394 | MS.gene070126:intron | 40.0% |
| !! | TGTATAGGTTGTTTCTGGAG+GGG | + | chr5.4:18241377-18241396 | MS.gene070126:intron | 40.0% |
| !!! | GACGGAGGGAGTATATTTTT+TGG | + | chr5.4:18240669-18240688 | MS.gene070126:intron | 40.0% |
| ATGCTTACATATAGGGACGG+AGG | + | chr5.4:18240654-18240673 | MS.gene070126:intron | 45.0% | |
| CAAAATGAGACTCCTCCTCA+AGG | + | chr5.4:18241631-18241650 | MS.gene070126:CDS | 45.0% | |
| CAAGCTGAGTCAGTACAAGA+AGG | + | chr5.4:18240492-18240511 | MS.gene070126:CDS | 45.0% | |
| CTGGAGGGGCTAGAAAAATA+TGG | + | chr5.4:18241391-18241410 | MS.gene070126:CDS | 45.0% | |
| GAAGTCGTGAAGCAAAGAGA+GGG | + | chr5.4:18240514-18240533 | MS.gene070126:CDS | 45.0% | |
| GAATGCTTAACCAATGCCCT+TGG | + | chr5.4:18240823-18240842 | MS.gene070126:intron | 45.0% | |
| GAGTCAGAGTCAGTATCTGA+AGG | + | chr5.4:18240447-18240466 | MS.gene070126:CDS | 45.0% | |
| GGACAAAGCAAGCACAACAT+AGG | - | chr5.4:18241694-18241713 | None:intergenic | 45.0% | |
| TACCCTTAGCGCAATGGTTA+AGG | + | chr5.4:18240706-18240725 | MS.gene070126:intron | 45.0% | |
| TCCGGAATTGTAGAACCGAT+TGG | - | chr5.4:18241715-18241734 | None:intergenic | 45.0% | |
| TGAGAAGATGCGCGACTTAT+TGG | + | chr5.4:18241747-18241766 | MS.gene070126:CDS | 45.0% | |
| TGCTTACATATAGGGACGGA+GGG | + | chr5.4:18240655-18240674 | MS.gene070126:intron | 45.0% | |
| TGTTTACACATAGGGACGGA+GGG | - | chr5.4:18240613-18240632 | None:intergenic | 45.0% | |
| ! | AGATCCCTCTGAGAATAGCA+TGG | + | chr5.4:18240329-18240348 | MS.gene070126:CDS | 45.0% |
| ! | TAGGGAAAGGGTACATTGGA+CGG | + | chr5.4:18240539-18240558 | MS.gene070126:CDS | 45.0% |
| AACCAGTACCCTTAGCGCAA+TGG | + | chr5.4:18240700-18240719 | MS.gene070126:intron | 50.0% | |
| GGAAGTCGTGAAGCAAAGAG+AGG | + | chr5.4:18240513-18240532 | MS.gene070126:CDS | 50.0% | |
| GTGTTTACACATAGGGACGG+AGG | - | chr5.4:18240614-18240633 | None:intergenic | 50.0% | |
| TGTGTCTGCTGCATTCCTTG+AGG | - | chr5.4:18241649-18241668 | None:intergenic | 50.0% | |
| ! | AAAGAGAGGGCGTAGGGAAA+GGG | + | chr5.4:18240527-18240546 | MS.gene070126:CDS | 50.0% |
| ! | AACCATTGCGCTAAGGGTAC+TGG | - | chr5.4:18240705-18240724 | None:intergenic | 50.0% |
| ! | AACTAGTGTCCCAAGGGCAT+TGG | - | chr5.4:18240836-18240855 | None:intergenic | 50.0% |
| ! | GAAAGGGTACATTGGACGGA+AGG | + | chr5.4:18240543-18240562 | MS.gene070126:CDS | 50.0% |
| ! | TGAAGCAAAGAGAGGGCGTA+GGG | + | chr5.4:18240521-18240540 | MS.gene070126:CDS | 50.0% |
| GTCTGCTGCATTCCTTGAGG+AGG | - | chr5.4:18241646-18241665 | None:intergenic | 55.0% | |
| ! | CAAAGAGAGGGCGTAGGGAA+AGG | + | chr5.4:18240526-18240545 | MS.gene070126:CDS | 55.0% |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | + | chr5.4:18240535-18240554 | MS.gene070126:CDS | 55.0% |
| ! | GTGAAGCAAAGAGAGGGCGT+AGG | + | chr5.4:18240520-18240539 | MS.gene070126:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 18240264 | 18241789 | 18240264 | ID=MS.gene070126 |
| chr5.4 | mRNA | 18240264 | 18241789 | 18240264 | ID=MS.gene070126.t1;Parent=MS.gene070126 |
| chr5.4 | exon | 18240264 | 18240574 | 18240264 | ID=MS.gene070126.t1.exon1;Parent=MS.gene070126.t1 |
| chr5.4 | CDS | 18240264 | 18240574 | 18240264 | ID=cds.MS.gene070126.t1;Parent=MS.gene070126.t1 |
| chr5.4 | exon | 18241384 | 18241789 | 18241384 | ID=MS.gene070126.t1.exon2;Parent=MS.gene070126.t1 |
| chr5.4 | CDS | 18241384 | 18241789 | 18241384 | ID=cds.MS.gene070126.t1;Parent=MS.gene070126.t1 |
| Gene Sequence |
| Protein sequence |
