Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070516.t1 | AES99850.1 | 95.7 | 234 | 9 | 1 | 1 | 233 | 1 | 234 | 6.30E-111 | 410.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070516.t1 | Q9STS6 | 56.9 | 102 | 43 | 1 | 9 | 110 | 36 | 136 | 8.3e-27 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070516.t1 | G7KHA7 | 95.7 | 234 | 9 | 1 | 1 | 233 | 1 | 234 | 4.6e-111 | 410.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene070516.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070516.t1 | MTR_5g085390 | 94.468 | 235 | 10 | 3 | 1 | 233 | 1 | 234 | 1.65e-138 | 388 |
| MS.gene070516.t1 | MTR_6g011200 | 56.967 | 244 | 84 | 6 | 1 | 233 | 1 | 234 | 6.08e-81 | 243 |
| MS.gene070516.t1 | MTR_6g011250 | 63.121 | 141 | 50 | 1 | 1 | 139 | 1 | 141 | 3.18e-59 | 185 |
| MS.gene070516.t1 | MTR_6g011230 | 47.257 | 237 | 81 | 11 | 1 | 228 | 1 | 202 | 6.72e-55 | 174 |
| MS.gene070516.t1 | MTR_4g099230 | 63.910 | 133 | 43 | 1 | 10 | 142 | 3 | 130 | 1.11e-54 | 172 |
| MS.gene070516.t1 | MTR_6g004550 | 55.556 | 126 | 50 | 2 | 37 | 159 | 1 | 123 | 1.90e-37 | 128 |
| MS.gene070516.t1 | MTR_4g107450 | 54.717 | 106 | 47 | 1 | 8 | 113 | 9 | 113 | 1.06e-31 | 117 |
| MS.gene070516.t1 | MTR_8g017090 | 53.333 | 105 | 48 | 1 | 7 | 111 | 10 | 113 | 1.20e-29 | 112 |
| MS.gene070516.t1 | MTR_3g073690 | 45.098 | 102 | 55 | 1 | 10 | 111 | 10 | 110 | 3.73e-28 | 106 |
| MS.gene070516.t1 | MTR_7g033800 | 34.545 | 165 | 80 | 4 | 7 | 159 | 9 | 157 | 2.34e-27 | 103 |
| MS.gene070516.t1 | MTR_3g452660 | 44.762 | 105 | 57 | 1 | 7 | 111 | 5 | 108 | 4.77e-27 | 105 |
| MS.gene070516.t1 | MTR_4g083680 | 32.164 | 171 | 97 | 5 | 10 | 178 | 16 | 169 | 4.77e-27 | 102 |
| MS.gene070516.t1 | MTR_5g017950 | 43.810 | 105 | 58 | 1 | 7 | 111 | 6 | 109 | 9.70e-27 | 105 |
| MS.gene070516.t1 | MTR_8g040900 | 47.126 | 87 | 45 | 1 | 3 | 89 | 1 | 86 | 2.47e-26 | 102 |
| MS.gene070516.t1 | MTR_4g105170 | 42.056 | 107 | 60 | 2 | 7 | 112 | 9 | 114 | 1.08e-25 | 99.4 |
| MS.gene070516.t1 | MTR_6g005080 | 43.878 | 98 | 54 | 1 | 7 | 104 | 8 | 104 | 2.03e-25 | 97.4 |
| MS.gene070516.t1 | MTR_6g005070 | 43.878 | 98 | 54 | 1 | 7 | 104 | 7 | 103 | 2.50e-25 | 97.4 |
| MS.gene070516.t1 | MTR_3g077240 | 42.857 | 98 | 55 | 1 | 7 | 104 | 8 | 104 | 4.43e-25 | 97.8 |
| MS.gene070516.t1 | MTR_2g100020 | 45.283 | 106 | 57 | 1 | 8 | 113 | 18 | 122 | 5.27e-25 | 99.8 |
| MS.gene070516.t1 | MTR_5g083960 | 36.449 | 107 | 64 | 2 | 1 | 107 | 34 | 136 | 8.10e-25 | 97.4 |
| MS.gene070516.t1 | MTR_5g075020 | 38.938 | 113 | 64 | 3 | 1 | 112 | 38 | 146 | 1.11e-24 | 97.8 |
| MS.gene070516.t1 | MTR_5g075020 | 38.938 | 113 | 64 | 3 | 1 | 112 | 42 | 150 | 1.44e-24 | 97.8 |
| MS.gene070516.t1 | MTR_3g031660 | 36.441 | 118 | 74 | 1 | 10 | 127 | 8 | 124 | 3.09e-24 | 95.5 |
| MS.gene070516.t1 | MTR_5g093010 | 32.639 | 144 | 88 | 4 | 10 | 149 | 6 | 144 | 4.38e-24 | 94.0 |
| MS.gene070516.t1 | MTR_2g068760 | 42.105 | 95 | 50 | 2 | 10 | 104 | 14 | 103 | 8.67e-24 | 93.6 |
| MS.gene070516.t1 | MTR_2g093310 | 48.750 | 80 | 40 | 1 | 10 | 89 | 34 | 112 | 1.68e-23 | 94.0 |
| MS.gene070516.t1 | MTR_7g028905 | 37.864 | 103 | 63 | 1 | 10 | 112 | 6 | 107 | 7.61e-23 | 90.1 |
| MS.gene070516.t1 | MTR_3g094690 | 38.182 | 110 | 60 | 3 | 1 | 110 | 42 | 143 | 8.27e-23 | 93.2 |
| MS.gene070516.t1 | MTR_5g083230 | 42.169 | 83 | 47 | 1 | 7 | 89 | 4 | 85 | 2.22e-22 | 90.1 |
| MS.gene070516.t1 | MTR_5g083010 | 38.053 | 113 | 61 | 3 | 5 | 113 | 7 | 114 | 2.71e-22 | 90.1 |
| MS.gene070516.t1 | MTR_4g060950 | 43.158 | 95 | 52 | 2 | 10 | 103 | 25 | 118 | 3.83e-22 | 90.1 |
| MS.gene070516.t1 | MTR_3g071590 | 34.459 | 148 | 87 | 5 | 10 | 157 | 9 | 146 | 1.21e-21 | 88.2 |
| MS.gene070516.t1 | MTR_3g094690 | 37.273 | 110 | 60 | 3 | 1 | 110 | 42 | 142 | 2.09e-21 | 89.4 |
| MS.gene070516.t1 | MTR_3g071420 | 38.614 | 101 | 57 | 2 | 5 | 105 | 10 | 105 | 2.57e-21 | 87.8 |
| MS.gene070516.t1 | MTR_8g079620 | 40.367 | 109 | 61 | 2 | 3 | 111 | 5 | 109 | 2.91e-21 | 89.0 |
| MS.gene070516.t1 | MTR_1g095850 | 42.553 | 94 | 53 | 1 | 10 | 103 | 73 | 165 | 5.39e-21 | 88.2 |
| MS.gene070516.t1 | MTR_8g079660 | 40.367 | 109 | 61 | 2 | 3 | 111 | 5 | 109 | 1.52e-20 | 87.8 |
| MS.gene070516.t1 | MTR_5g080470 | 33.654 | 104 | 67 | 2 | 9 | 111 | 7 | 109 | 4.81e-17 | 76.6 |
| MS.gene070516.t1 | MTR_8g079580 | 37.615 | 109 | 63 | 3 | 3 | 110 | 5 | 109 | 1.99e-16 | 75.9 |
| MS.gene070516.t1 | MTR_1g070220 | 36.000 | 100 | 62 | 2 | 10 | 108 | 16 | 114 | 6.46e-16 | 73.9 |
| MS.gene070516.t1 | MTR_8g036105 | 35.922 | 103 | 64 | 2 | 10 | 111 | 19 | 120 | 7.55e-16 | 73.9 |
| MS.gene070516.t1 | MTR_7g096530 | 33.654 | 104 | 67 | 2 | 10 | 112 | 15 | 117 | 7.88e-16 | 73.9 |
| MS.gene070516.t1 | MTR_6g027710 | 33.898 | 118 | 68 | 4 | 3 | 114 | 37 | 150 | 1.44e-15 | 73.6 |
| MS.gene070516.t1 | MTR_8g009730 | 30.469 | 128 | 87 | 2 | 9 | 136 | 10 | 135 | 9.08e-15 | 70.9 |
| MS.gene070516.t1 | MTR_6g027700 | 30.645 | 124 | 78 | 3 | 10 | 126 | 8 | 130 | 1.68e-14 | 70.1 |
| MS.gene070516.t1 | MTR_7g074990 | 33.000 | 100 | 65 | 2 | 10 | 108 | 21 | 119 | 2.95e-14 | 70.1 |
| MS.gene070516.t1 | MTR_1g070205 | 34.783 | 115 | 65 | 5 | 10 | 123 | 13 | 118 | 4.81e-14 | 69.3 |
| MS.gene070516.t1 | MTR_8g036085 | 32.039 | 103 | 68 | 2 | 10 | 111 | 24 | 125 | 5.13e-14 | 69.3 |
| MS.gene070516.t1 | MTR_4g088035 | 25.157 | 159 | 108 | 2 | 9 | 157 | 6 | 163 | 1.13e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070516.t1 | AT3G47870 | 56.863 | 102 | 43 | 1 | 9 | 110 | 36 | 136 | 2.48e-36 | 130 |
| MS.gene070516.t1 | AT3G13850 | 48.246 | 114 | 58 | 1 | 8 | 121 | 35 | 147 | 7.96e-30 | 112 |
| MS.gene070516.t1 | AT1G65620 | 30.348 | 201 | 130 | 2 | 7 | 207 | 7 | 197 | 1.54e-27 | 104 |
| MS.gene070516.t1 | AT1G65620 | 30.348 | 201 | 130 | 2 | 7 | 207 | 7 | 197 | 1.54e-27 | 104 |
| MS.gene070516.t1 | AT1G65620 | 30.348 | 201 | 130 | 2 | 7 | 207 | 7 | 197 | 1.54e-27 | 104 |
| MS.gene070516.t1 | AT1G65620 | 30.348 | 201 | 130 | 2 | 7 | 207 | 7 | 197 | 1.54e-27 | 104 |
| MS.gene070516.t1 | AT1G65620 | 30.348 | 201 | 130 | 2 | 7 | 207 | 7 | 197 | 1.54e-27 | 104 |
| MS.gene070516.t1 | AT5G66870 | 44.118 | 102 | 56 | 1 | 10 | 111 | 8 | 108 | 1.20e-26 | 105 |
| MS.gene070516.t1 | AT3G27650 | 42.342 | 111 | 62 | 2 | 7 | 116 | 37 | 146 | 2.20e-26 | 100 |
| MS.gene070516.t1 | AT2G40470 | 34.247 | 146 | 84 | 5 | 1 | 145 | 15 | 149 | 1.90e-25 | 99.0 |
| MS.gene070516.t1 | AT2G40470 | 34.247 | 146 | 84 | 5 | 1 | 145 | 40 | 174 | 3.95e-25 | 99.0 |
| MS.gene070516.t1 | AT1G72980 | 42.975 | 121 | 67 | 2 | 9 | 128 | 13 | 132 | 5.77e-25 | 98.2 |
| MS.gene070516.t1 | AT5G63090 | 40.566 | 106 | 62 | 1 | 7 | 112 | 9 | 113 | 6.00e-25 | 97.4 |
| MS.gene070516.t1 | AT5G63090 | 40.566 | 106 | 62 | 1 | 7 | 112 | 9 | 113 | 6.00e-25 | 97.4 |
| MS.gene070516.t1 | AT5G63090 | 40.566 | 106 | 62 | 1 | 7 | 112 | 9 | 113 | 6.00e-25 | 97.4 |
| MS.gene070516.t1 | AT5G63090 | 40.566 | 106 | 62 | 1 | 7 | 112 | 9 | 113 | 6.00e-25 | 97.4 |
| MS.gene070516.t1 | AT2G30340 | 37.037 | 108 | 64 | 2 | 1 | 108 | 48 | 151 | 4.47e-24 | 97.1 |
| MS.gene070516.t1 | AT2G30340 | 37.037 | 108 | 64 | 2 | 1 | 108 | 47 | 150 | 4.82e-24 | 97.1 |
| MS.gene070516.t1 | AT1G31320 | 47.500 | 80 | 41 | 1 | 10 | 89 | 14 | 92 | 5.40e-24 | 94.7 |
| MS.gene070516.t1 | AT1G07900 | 48.750 | 80 | 40 | 1 | 10 | 89 | 34 | 112 | 1.17e-22 | 91.7 |
| MS.gene070516.t1 | AT2G23660 | 41.176 | 102 | 59 | 1 | 10 | 111 | 6 | 106 | 1.71e-22 | 94.0 |
| MS.gene070516.t1 | AT2G23660 | 41.176 | 102 | 59 | 1 | 10 | 111 | 6 | 106 | 1.71e-22 | 94.0 |
| MS.gene070516.t1 | AT2G23660 | 41.176 | 102 | 59 | 1 | 10 | 111 | 6 | 106 | 1.71e-22 | 94.0 |
| MS.gene070516.t1 | AT2G28500 | 48.750 | 80 | 40 | 1 | 10 | 89 | 56 | 134 | 3.56e-22 | 91.3 |
| MS.gene070516.t1 | AT3G26660 | 34.615 | 104 | 67 | 1 | 8 | 111 | 4 | 106 | 6.48e-22 | 87.8 |
| MS.gene070516.t1 | AT3G26620 | 32.174 | 115 | 77 | 1 | 8 | 122 | 4 | 117 | 7.45e-22 | 87.4 |
| MS.gene070516.t1 | AT2G30130 | 36.522 | 115 | 71 | 2 | 10 | 124 | 9 | 121 | 2.10e-21 | 88.2 |
| MS.gene070516.t1 | AT1G16530 | 34.921 | 126 | 76 | 4 | 10 | 133 | 15 | 136 | 2.16e-21 | 87.4 |
| MS.gene070516.t1 | AT1G06280 | 40.385 | 104 | 54 | 3 | 7 | 110 | 22 | 117 | 1.09e-20 | 86.7 |
| MS.gene070516.t1 | AT3G50510 | 39.091 | 110 | 65 | 2 | 5 | 113 | 8 | 116 | 1.25e-20 | 86.3 |
| MS.gene070516.t1 | AT3G50510 | 39.091 | 110 | 65 | 2 | 5 | 113 | 8 | 116 | 1.25e-20 | 86.3 |
| MS.gene070516.t1 | AT3G11090 | 35.644 | 101 | 60 | 2 | 5 | 105 | 7 | 102 | 3.04e-20 | 84.7 |
| MS.gene070516.t1 | AT5G15060 | 45.205 | 73 | 39 | 1 | 10 | 81 | 18 | 90 | 3.20e-17 | 75.9 |
| MS.gene070516.t1 | AT2G19820 | 40.000 | 80 | 48 | 0 | 10 | 89 | 13 | 92 | 5.70e-17 | 74.7 |
| MS.gene070516.t1 | AT4G00210 | 31.343 | 134 | 89 | 3 | 10 | 142 | 12 | 143 | 5.62e-16 | 74.3 |
| MS.gene070516.t1 | AT3G03760 | 35.294 | 102 | 64 | 2 | 10 | 110 | 52 | 152 | 1.08e-15 | 74.7 |
| MS.gene070516.t1 | AT5G35900 | 31.068 | 103 | 70 | 1 | 9 | 111 | 5 | 106 | 2.67e-15 | 72.4 |
| MS.gene070516.t1 | AT4G00220 | 32.673 | 101 | 66 | 2 | 12 | 111 | 20 | 119 | 6.54e-15 | 71.6 |
| MS.gene070516.t1 | AT2G42430 | 37.805 | 82 | 49 | 2 | 10 | 90 | 16 | 96 | 2.70e-14 | 70.5 |
| MS.gene070516.t1 | AT5G06080 | 30.597 | 134 | 81 | 4 | 9 | 141 | 7 | 129 | 8.95e-14 | 67.8 |
| MS.gene070516.t1 | AT2G31310 | 31.298 | 131 | 72 | 4 | 10 | 127 | 8 | 133 | 1.64e-13 | 67.0 |
| MS.gene070516.t1 | AT3G58190 | 32.039 | 103 | 68 | 2 | 10 | 111 | 12 | 113 | 4.77e-13 | 66.2 |
| MS.gene070516.t1 | AT2G45420 | 31.683 | 101 | 67 | 2 | 12 | 111 | 40 | 139 | 7.52e-13 | 66.6 |
| MS.gene070516.t1 | AT2G42440 | 30.303 | 99 | 67 | 2 | 10 | 107 | 8 | 105 | 9.47e-13 | 65.9 |
| MS.gene070516.t1 | AT2G45410 | 32.673 | 101 | 66 | 2 | 12 | 111 | 19 | 118 | 5.50e-12 | 63.2 |
Find 40 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTAAATATTGGGATATT+TGG | 0.141273 | 5.4:-67549233 | None:intergenic |
| TCACCAACATTGTTAAATAT+TGG | 0.190888 | 5.4:-67549242 | None:intergenic |
| CTTGGTGTTATTATGAATTA+TGG | 0.198268 | 5.4:+67549089 | MS.gene070516:CDS |
| AGCTAGAACAACATTTGATT+TGG | 0.264146 | 5.4:+67549481 | MS.gene070516:CDS |
| TCATTGCTTGATAATCCTTT+TGG | 0.267871 | 5.4:-67549413 | None:intergenic |
| CATGCTGCACAAGCCTTGTT+TGG | 0.269582 | 5.4:-67548849 | None:intergenic |
| TCCTTTAGCTCCTTATTTCC+CGG | 0.285923 | 5.4:+67548905 | MS.gene070516:CDS |
| GGAATTTGAGAACTAGTATA+AGG | 0.287802 | 5.4:-67549212 | None:intergenic |
| AATATCCGACTCAATAATTA+TGG | 0.288561 | 5.4:-67549039 | None:intergenic |
| GCTAGAACAACATTTGATTT+GGG | 0.292314 | 5.4:+67549482 | MS.gene070516:CDS |
| CACCAACATTGTTAAATATT+GGG | 0.294726 | 5.4:-67549241 | None:intergenic |
| GGTTTATCGGCCGGGAAATA+AGG | 0.295833 | 5.4:-67548915 | None:intergenic |
| AGCAACGCTCATCGTTTGTT+TGG | 0.383470 | 5.4:+67548948 | MS.gene070516:CDS |
| GGATGACAATTCTAATTTGA+TGG | 0.388591 | 5.4:+67549388 | MS.gene070516:CDS |
| CCTCATGATGTTAACTATAG+TGG | 0.400420 | 5.4:+67549350 | MS.gene070516:CDS |
| AGATATGTTAAAGCAGTCTA+TGG | 0.416875 | 5.4:+67549112 | MS.gene070516:CDS |
| CTTTAGTATCCTTTGTATGT+TGG | 0.435097 | 5.4:-67548976 | None:intergenic |
| CGTGCAAAATCTCCCGTTCA+TGG | 0.444453 | 5.4:+67549062 | MS.gene070516:CDS |
| ATCCCAATATTTAACAATGT+TGG | 0.449694 | 5.4:+67549239 | MS.gene070516:CDS |
| GACGACCTTGACGACCTTGA+TGG | 0.460725 | 5.4:+67549443 | MS.gene070516:CDS |
| TTTGGTTTAATGATATTCAT+TGG | 0.470812 | 5.4:-67548831 | None:intergenic |
| TCTAATTTGATGGTACCAAA+AGG | 0.475215 | 5.4:+67549398 | MS.gene070516:CDS |
| ACACCAAGACATCCATGAAC+GGG | 0.497015 | 5.4:-67549074 | None:intergenic |
| TCTCCCGTTCATGGATGTCT+TGG | 0.510462 | 5.4:+67549071 | MS.gene070516:CDS |
| AAAGCAGTCTATGGAAGAGT+TGG | 0.512156 | 5.4:+67549121 | MS.gene070516:CDS |
| AAGGATACTAAAGGAAATCA+AGG | 0.515917 | 5.4:+67548986 | MS.gene070516:CDS |
| GCCGGGAAATAAGGAGCTAA+AGG | 0.524058 | 5.4:-67548906 | None:intergenic |
| CAACATACAAAGGATACTAA+AGG | 0.551295 | 5.4:+67548977 | MS.gene070516:CDS |
| CTAGAACAACATTTGATTTG+GGG | 0.562151 | 5.4:+67549483 | MS.gene070516:CDS |
| GAGATCCATAATTATTGAGT+CGG | 0.580015 | 5.4:+67549034 | MS.gene070516:CDS |
| CCACTATAGTTAACATCATG+AGG | 0.583308 | 5.4:-67549350 | None:intergenic |
| GTTCATCAACACCACCATCA+AGG | 0.592727 | 5.4:-67549457 | None:intergenic |
| TTGGTGTTTCCAACATACAA+AGG | 0.602738 | 5.4:+67548967 | MS.gene070516:CDS |
| AACACCAAGACATCCATGAA+CGG | 0.603796 | 5.4:-67549075 | None:intergenic |
| GAATATCATTAAACCAAACA+AGG | 0.609165 | 5.4:+67548836 | MS.gene070516:CDS |
| CACCACCATCAAGGTCGTCA+AGG | 0.611148 | 5.4:-67549448 | None:intergenic |
| CATGATGTTAACTATAGTGG+TGG | 0.632189 | 5.4:+67549353 | MS.gene070516:CDS |
| TAGTGGTGGCGACTATGTCA+TGG | 0.648101 | 5.4:+67549367 | MS.gene070516:CDS |
| CACTATAGTTAACATCATGA+GGG | 0.659397 | 5.4:-67549349 | None:intergenic |
| GACCTTGACGACCTTGATGG+TGG | 0.717140 | 5.4:+67549446 | MS.gene070516:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGATAATAATAATAATAATT+AGG | - | chr5.4:67549272-67549291 | None:intergenic | 10.0% |
| !!! | ATATTATTATTTTCACTATT+GGG | - | chr5.4:67549293-67549312 | None:intergenic | 10.0% |
| !!! | CATATTATTATTTTCACTAT+TGG | - | chr5.4:67549294-67549313 | None:intergenic | 15.0% |
| !! | TTGTTAAATATTGGGATATT+TGG | - | chr5.4:67549236-67549255 | None:intergenic | 20.0% |
| ! | AATATCCGACTCAATAATTA+TGG | - | chr5.4:67549042-67549061 | None:intergenic | 25.0% |
| ! | ATCCCAATATTTAACAATGT+TGG | + | chr5.4:67549239-67549258 | MS.gene070516:CDS | 25.0% |
| ! | CACCAACATTGTTAAATATT+GGG | - | chr5.4:67549244-67549263 | None:intergenic | 25.0% |
| ! | GAATATCATTAAACCAAACA+AGG | + | chr5.4:67548836-67548855 | MS.gene070516:CDS | 25.0% |
| ! | TCACCAACATTGTTAAATAT+TGG | - | chr5.4:67549245-67549264 | None:intergenic | 25.0% |
| !!! | CTTGGTGTTATTATGAATTA+TGG | + | chr5.4:67549089-67549108 | MS.gene070516:CDS | 25.0% |
| !!! | GCTAAACATTTTTGGTTTAT+CGG | - | chr5.4:67548931-67548950 | None:intergenic | 25.0% |
| AAGGATACTAAAGGAAATCA+AGG | + | chr5.4:67548986-67549005 | MS.gene070516:CDS | 30.0% | |
| AGATATGTTAAAGCAGTCTA+TGG | + | chr5.4:67549112-67549131 | MS.gene070516:CDS | 30.0% | |
| AGCTAGAACAACATTTGATT+TGG | + | chr5.4:67549481-67549500 | MS.gene070516:CDS | 30.0% | |
| CAACATACAAAGGATACTAA+AGG | + | chr5.4:67548977-67548996 | MS.gene070516:CDS | 30.0% | |
| CACTATAGTTAACATCATGA+GGG | - | chr5.4:67549352-67549371 | None:intergenic | 30.0% | |
| CTTTAGTATCCTTTGTATGT+TGG | - | chr5.4:67548979-67548998 | None:intergenic | 30.0% | |
| GAGATCCATAATTATTGAGT+CGG | + | chr5.4:67549034-67549053 | MS.gene070516:CDS | 30.0% | |
| GGAATTTGAGAACTAGTATA+AGG | - | chr5.4:67549215-67549234 | None:intergenic | 30.0% | |
| GGATGACAATTCTAATTTGA+TGG | + | chr5.4:67549388-67549407 | MS.gene070516:CDS | 30.0% | |
| ! | GCTAGAACAACATTTGATTT+GGG | + | chr5.4:67549482-67549501 | MS.gene070516:CDS | 30.0% |
| ! | TCTAATTTGATGGTACCAAA+AGG | + | chr5.4:67549398-67549417 | MS.gene070516:CDS | 30.0% |
| !! | ACATTTGATTTGGGGAAAAA+AGG | + | chr5.4:67549491-67549510 | MS.gene070516:CDS | 30.0% |
| !! | CTAGAACAACATTTGATTTG+GGG | + | chr5.4:67549483-67549502 | MS.gene070516:CDS | 30.0% |
| !! | TCATTGCTTGATAATCCTTT+TGG | - | chr5.4:67549416-67549435 | None:intergenic | 30.0% |
| CATGATGTTAACTATAGTGG+TGG | + | chr5.4:67549353-67549372 | MS.gene070516:CDS | 35.0% | |
| CCACTATAGTTAACATCATG+AGG | - | chr5.4:67549353-67549372 | None:intergenic | 35.0% | |
| CCTCATGATGTTAACTATAG+TGG | + | chr5.4:67549350-67549369 | MS.gene070516:CDS | 35.0% | |
| ! | TTGGTGTTTCCAACATACAA+AGG | + | chr5.4:67548967-67548986 | MS.gene070516:CDS | 35.0% |
| !! | TGAGCGTTGCTAAACATTTT+TGG | - | chr5.4:67548939-67548958 | None:intergenic | 35.0% |
| !!! | AACATTTTTGGTTTATCGGC+CGG | - | chr5.4:67548927-67548946 | None:intergenic | 35.0% |
| AAAGCAGTCTATGGAAGAGT+TGG | + | chr5.4:67549121-67549140 | MS.gene070516:CDS | 40.0% | |
| AACACCAAGACATCCATGAA+CGG | - | chr5.4:67549078-67549097 | None:intergenic | 40.0% | |
| ! | TCCTTTAGCTCCTTATTTCC+CGG | + | chr5.4:67548905-67548924 | MS.gene070516:CDS | 40.0% |
| !!! | ACATTTTTGGTTTATCGGCC+GGG | - | chr5.4:67548926-67548945 | None:intergenic | 40.0% |
| ACACCAAGACATCCATGAAC+GGG | - | chr5.4:67549077-67549096 | None:intergenic | 45.0% | |
| AGCAACGCTCATCGTTTGTT+TGG | + | chr5.4:67548948-67548967 | MS.gene070516:CDS | 45.0% | |
| GTTCATCAACACCACCATCA+AGG | - | chr5.4:67549460-67549479 | None:intergenic | 45.0% | |
| CGTGCAAAATCTCCCGTTCA+TGG | + | chr5.4:67549062-67549081 | MS.gene070516:CDS | 50.0% | |
| GCCGGGAAATAAGGAGCTAA+AGG | - | chr5.4:67548909-67548928 | None:intergenic | 50.0% | |
| GGTTTATCGGCCGGGAAATA+AGG | - | chr5.4:67548918-67548937 | None:intergenic | 50.0% | |
| TCTCCCGTTCATGGATGTCT+TGG | + | chr5.4:67549071-67549090 | MS.gene070516:CDS | 50.0% | |
| ! | TAGTGGTGGCGACTATGTCA+TGG | + | chr5.4:67549367-67549386 | MS.gene070516:CDS | 50.0% |
| !! | CATGCTGCACAAGCCTTGTT+TGG | - | chr5.4:67548852-67548871 | None:intergenic | 50.0% |
| CACCACCATCAAGGTCGTCA+AGG | - | chr5.4:67549451-67549470 | None:intergenic | 55.0% | |
| GACCTTGACGACCTTGATGG+TGG | + | chr5.4:67549446-67549465 | MS.gene070516:CDS | 55.0% | |
| GACGACCTTGACGACCTTGA+TGG | + | chr5.4:67549443-67549462 | MS.gene070516:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 67548834 | 67549535 | 67548834 | ID=MS.gene070516 |
| chr5.4 | mRNA | 67548834 | 67549535 | 67548834 | ID=MS.gene070516.t1;Parent=MS.gene070516 |
| chr5.4 | exon | 67548834 | 67549535 | 67548834 | ID=MS.gene070516.t1.exon1;Parent=MS.gene070516.t1 |
| chr5.4 | CDS | 67548834 | 67549535 | 67548834 | ID=cds.MS.gene070516.t1;Parent=MS.gene070516.t1 |
| Gene Sequence |
| Protein sequence |
