Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070576.t1 | RHN55381.1 | 93.8 | 468 | 18 | 1 | 1 | 468 | 1 | 457 | 5.60E-260 | 906.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070576.t1 | Q9FMS5 | 48.8 | 482 | 212 | 11 | 1 | 468 | 212 | 672 | 3.4e-120 | 433.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070576.t1 | G7KF85 | 93.8 | 468 | 18 | 1 | 1 | 468 | 210 | 666 | 4.1e-260 | 906.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene070576.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070576.t1 | MTR_5g040700 | 95.726 | 468 | 9 | 1 | 1 | 468 | 210 | 666 | 0.0 | 921 |
| MS.gene070576.t1 | MTR_5g077750 | 32.685 | 514 | 260 | 13 | 1 | 457 | 193 | 677 | 2.35e-72 | 242 |
| MS.gene070576.t1 | MTR_4g035550 | 29.730 | 481 | 270 | 14 | 1 | 461 | 237 | 669 | 4.30e-52 | 187 |
| MS.gene070576.t1 | MTR_1g076990 | 28.998 | 469 | 282 | 14 | 1 | 458 | 70 | 498 | 2.06e-49 | 177 |
| MS.gene070576.t1 | MTR_1g076990 | 28.936 | 470 | 283 | 14 | 1 | 459 | 98 | 527 | 2.96e-49 | 177 |
| MS.gene070576.t1 | MTR_1g076990 | 28.936 | 470 | 283 | 14 | 1 | 459 | 240 | 669 | 1.55e-48 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070576.t1 | AT5G22260 | 49.587 | 484 | 205 | 12 | 1 | 468 | 212 | 672 | 1.49e-149 | 442 |
| MS.gene070576.t1 | AT2G01810 | 26.488 | 521 | 282 | 15 | 1 | 457 | 199 | 682 | 2.22e-47 | 174 |
| MS.gene070576.t1 | AT1G33420 | 28.337 | 487 | 265 | 16 | 1 | 468 | 132 | 553 | 5.32e-46 | 169 |
| MS.gene070576.t1 | AT1G33420 | 28.361 | 476 | 260 | 15 | 1 | 457 | 237 | 650 | 1.82e-45 | 169 |
| MS.gene070576.t1 | AT1G66170 | 36.752 | 234 | 109 | 5 | 1 | 195 | 193 | 426 | 1.21e-36 | 143 |
| MS.gene070576.t1 | AT1G66170 | 34.965 | 143 | 81 | 3 | 321 | 462 | 527 | 658 | 1.08e-18 | 89.7 |
| MS.gene070576.t1 | AT2G07714 | 41.414 | 99 | 51 | 2 | 1 | 94 | 27 | 123 | 1.12e-15 | 75.9 |
Find 98 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCTTCTTATTGCTTCTA+TGG | 0.182195 | 5.3:+28507922 | None:intergenic |
| CACTCCACAATTCCCTTCTT+TGG | 0.188498 | 5.3:+28506819 | None:intergenic |
| AGAAATTCTGACCCTATAAT+TGG | 0.198934 | 5.3:+28507284 | None:intergenic |
| TCAAATAATACTCATGATTA+TGG | 0.227620 | 5.3:+28507111 | None:intergenic |
| ATTGACACAAAACCAATTAT+AGG | 0.232727 | 5.3:-28507296 | MS.gene070576:CDS |
| TGGTACCTTTGGAAGATTAA+TGG | 0.241935 | 5.3:+28507851 | None:intergenic |
| ATTGCCGTTGGTCCCCTAAA+AGG | 0.294915 | 5.3:-28507703 | MS.gene070576:CDS |
| TGAGCCATGGTTTGGTCGTT+GGG | 0.296656 | 5.3:-28507999 | MS.gene070576:CDS |
| ATCACTCTCTTGTCACCCTT+GGG | 0.305190 | 5.3:-28507817 | MS.gene070576:CDS |
| CAGAAAGTGTTTGGTACCTT+TGG | 0.317798 | 5.3:+28507840 | None:intergenic |
| TGAGGAACTTCTTCATCATT+TGG | 0.319257 | 5.3:+28506708 | None:intergenic |
| GATTAATGGGATTTCATGAT+TGG | 0.324820 | 5.3:+28507865 | None:intergenic |
| AAATTTGGTCGAGGATGTTT+TGG | 0.327870 | 5.3:-28507971 | MS.gene070576:CDS |
| GGTACCTTTGGAAGATTAAT+GGG | 0.334887 | 5.3:+28507852 | None:intergenic |
| GTTCCTTTGCATGTTGAGTT+AGG | 0.340925 | 5.3:-28507194 | MS.gene070576:CDS |
| TACTCATAACCAACCCTTCA+TGG | 0.346998 | 5.3:+28507441 | None:intergenic |
| TTGACACAAAACCAATTATA+GGG | 0.352156 | 5.3:-28507295 | MS.gene070576:CDS |
| GGTCGTTGGGGATACAAATT+TGG | 0.369438 | 5.3:-28507986 | MS.gene070576:CDS |
| AAATATCTTATCAAAGACTA+TGG | 0.371766 | 5.3:-28507221 | MS.gene070576:CDS |
| GGGAATTTGATGAATGCAAA+AGG | 0.384193 | 5.3:-28506951 | MS.gene070576:CDS |
| CCACGTTGTTGGAAACTACT+TGG | 0.385325 | 5.3:-28507537 | MS.gene070576:CDS |
| GCATTCATCAAATTCCCATT+TGG | 0.391057 | 5.3:+28506957 | None:intergenic |
| AGGTTGGCATGGTGGTGAAA+TGG | 0.392045 | 5.3:-28506877 | MS.gene070576:CDS |
| TATCGGAGACACTGGTTTGT+TGG | 0.392257 | 5.3:-28507585 | MS.gene070576:CDS |
| GACTAAGGCGCTTGTGTTGA+AGG | 0.393851 | 5.3:+28507733 | None:intergenic |
| GGTTGGCATGGTGGTGAAAT+GGG | 0.394662 | 5.3:-28506876 | MS.gene070576:CDS |
| CTTGTGATATTTGTGAAATT+CGG | 0.397758 | 5.3:-28506755 | MS.gene070576:CDS |
| ACGGCAATTTGTTTCGACTA+AGG | 0.405526 | 5.3:+28507718 | None:intergenic |
| TAGTAGTAGTAATAAAGTTA+AGG | 0.409211 | 5.3:-28507384 | MS.gene070576:CDS |
| GATCACTCTCTTGTCACCCT+TGG | 0.414717 | 5.3:-28507818 | MS.gene070576:CDS |
| TCATATAGTTATGGCAAAGA+AGG | 0.438373 | 5.3:+28506642 | None:intergenic |
| TTCAATGTGATACATTCATA+AGG | 0.439527 | 5.3:+28507068 | None:intergenic |
| GTGAGCCATGGTTTGGTCGT+TGG | 0.449098 | 5.3:-28508000 | MS.gene070576:CDS |
| TGGTGAAATGGGAATCAATA+TGG | 0.450711 | 5.3:-28506865 | MS.gene070576:CDS |
| CAGCTATACCATTGGCAGCT+AGG | 0.451926 | 5.3:-28507259 | MS.gene070576:CDS |
| GATGCCGCACGCGCTTATAT+CGG | 0.463998 | 5.3:-28507602 | MS.gene070576:CDS |
| GGAACCAATGCATGTTTCAC+GGG | 0.465445 | 5.3:+28507754 | None:intergenic |
| GAGAGTGATCAGAAAGTGTT+TGG | 0.465582 | 5.3:+28507831 | None:intergenic |
| GGAATTGTGGAGTGCATTTG+TGG | 0.466448 | 5.3:-28506810 | MS.gene070576:CDS |
| TCACTAGGTAACCACGTTGT+TGG | 0.474295 | 5.3:-28507548 | MS.gene070576:CDS |
| AATGTTTACCCTTGCCATGA+AGG | 0.474845 | 5.3:-28507455 | MS.gene070576:CDS |
| GCATACAGTGAGCCATGGTT+TGG | 0.489223 | 5.3:-28508007 | MS.gene070576:CDS |
| GGTTCGTCGAAGCTTGAATC+CGG | 0.492847 | 5.3:-28507516 | MS.gene070576:CDS |
| ATACATTCATAAGGTGGCAT+TGG | 0.496564 | 5.3:+28507077 | None:intergenic |
| GGAATTTGATGAATGCAAAA+GGG | 0.503842 | 5.3:-28506950 | MS.gene070576:CDS |
| ATGTGAAAGGGATCCAAAGA+AGG | 0.504134 | 5.3:-28506832 | MS.gene070576:CDS |
| GTCCCCTAAAAGGATCGAAA+TGG | 0.514652 | 5.3:-28507693 | MS.gene070576:CDS |
| AGGAACCAATGCATGTTTCA+CGG | 0.518168 | 5.3:+28507753 | None:intergenic |
| GAATGCAAAAGGGAATGAAA+TGG | 0.526326 | 5.3:-28506940 | MS.gene070576:CDS |
| AGGACAAGTACAAGATTACA+AGG | 0.526429 | 5.3:-28507364 | MS.gene070576:CDS |
| ATGTTTACCCTTGCCATGAA+GGG | 0.535284 | 5.3:-28507454 | MS.gene070576:CDS |
| GAAAACTTGTACTTGAAGGT+TGG | 0.535716 | 5.3:-28506893 | MS.gene070576:CDS |
| GGTTGAGCAAATATGTGAAA+GGG | 0.538616 | 5.3:-28506844 | MS.gene070576:CDS |
| ATTTCTTTCAGCTATACCAT+TGG | 0.544168 | 5.3:-28507267 | MS.gene070576:CDS |
| GACAAGTACAAGATTACAAG+GGG | 0.544839 | 5.3:-28507362 | MS.gene070576:CDS |
| AGAAGATGATGGTGAGAGAA+TGG | 0.554875 | 5.3:-28506781 | MS.gene070576:CDS |
| CATATAGTTATGGCAAAGAA+GGG | 0.555846 | 5.3:+28506643 | None:intergenic |
| TGGTTGAGCAAATATGTGAA+AGG | 0.555851 | 5.3:-28506845 | MS.gene070576:CDS |
| TTCGGGATGATTGAAGTGGG+TGG | 0.555996 | 5.3:-28506915 | MS.gene070576:CDS |
| GATCCTAACTCAACATGCAA+AGG | 0.567181 | 5.3:+28507191 | None:intergenic |
| TGGGGATACAAATTTGGTCG+AGG | 0.568057 | 5.3:-28507980 | MS.gene070576:CDS |
| CTTCCCCGTGAAACATGCAT+TGG | 0.568498 | 5.3:-28507758 | MS.gene070576:CDS |
| GGTGGAAAACTTGTACTTGA+AGG | 0.570004 | 5.3:-28506897 | MS.gene070576:CDS |
| GGATCCAAAGAAGGGAATTG+TGG | 0.571681 | 5.3:-28506823 | MS.gene070576:CDS |
| ACTTAAAGCTAGAAGTTGAA+AGG | 0.578921 | 5.3:-28507025 | MS.gene070576:CDS |
| TTACCCTTGCCATGAAGGGT+TGG | 0.581244 | 5.3:-28507450 | MS.gene070576:CDS |
| ATAACCAACCCTTCATGGCA+AGG | 0.588536 | 5.3:+28507446 | None:intergenic |
| GAATCCGGTTACAAAAGTGT+TGG | 0.591697 | 5.3:-28507501 | MS.gene070576:CDS |
| CGCGCTTATATCGGAGACAC+TGG | 0.594457 | 5.3:-28507593 | MS.gene070576:CDS |
| AATGTGATACATTCATAAGG+TGG | 0.594621 | 5.3:+28507071 | None:intergenic |
| GGCAACACGGGTCATTGTTG+AGG | 0.600772 | 5.3:-28507672 | MS.gene070576:CDS |
| AAGGATCGAAATGGCAACAC+GGG | 0.601348 | 5.3:-28507684 | MS.gene070576:CDS |
| TGTGAAAGGGATCCAAAGAA+GGG | 0.602822 | 5.3:-28506831 | MS.gene070576:CDS |
| TCACTCTCTTGTCACCCTTG+GGG | 0.608508 | 5.3:-28507816 | MS.gene070576:CDS |
| ATGGAACTAAGACTTGTGAA+TGG | 0.611915 | 5.3:-28508034 | MS.gene070576:CDS |
| TAGTCGAAACAAATTGCCGT+TGG | 0.612043 | 5.3:-28507715 | MS.gene070576:CDS |
| GAGCCATGGTTTGGTCGTTG+GGG | 0.614975 | 5.3:-28507998 | MS.gene070576:CDS |
| AGAATTATCCTAGCTGCCAA+TGG | 0.615757 | 5.3:+28507251 | None:intergenic |
| TAACCAACCCTTCATGGCAA+GGG | 0.616092 | 5.3:+28507447 | None:intergenic |
| CTTGTACTTGAAGGTTGGCA+TGG | 0.619314 | 5.3:-28506888 | MS.gene070576:CDS |
| AAATCCCATTAATCTTCCAA+AGG | 0.619758 | 5.3:-28507856 | MS.gene070576:CDS |
| TGGTGTGTGAGTAAGTATAG+TGG | 0.621011 | 5.3:+28507899 | None:intergenic |
| TGTAGTGAAATAAGTCCCCA+AGG | 0.621432 | 5.3:+28507801 | None:intergenic |
| TGTGGAACTAAAGAAGATGA+TGG | 0.634151 | 5.3:-28506792 | MS.gene070576:CDS |
| AAAGGATCGAAATGGCAACA+CGG | 0.636312 | 5.3:-28507685 | MS.gene070576:CDS |
| TCATGAGTATTATTTGAACA+AGG | 0.637154 | 5.3:-28507105 | MS.gene070576:CDS |
| GAATAGCATACAGTGAGCCA+TGG | 0.638270 | 5.3:-28508012 | MS.gene070576:CDS |
| ACATGTTAGAGCTCAAGTCA+CGG | 0.647934 | 5.3:-28507781 | MS.gene070576:CDS |
| GTCTCCGATATAAGCGCGTG+CGG | 0.649774 | 5.3:+28507598 | None:intergenic |
| CATGATTGGAATTTGCAATG+TGG | 0.652672 | 5.3:+28507879 | None:intergenic |
| GGACAAGTACAAGATTACAA+GGG | 0.673997 | 5.3:-28507363 | MS.gene070576:CDS |
| TATCCCCAACGACCAAACCA+TGG | 0.677929 | 5.3:+28507995 | None:intergenic |
| GAACCAATGCATGTTTCACG+GGG | 0.696558 | 5.3:+28507755 | None:intergenic |
| GTAGTGAAATAAGTCCCCAA+GGG | 0.700987 | 5.3:+28507802 | None:intergenic |
| CCAAGTAGTTTCCAACAACG+TGG | 0.703750 | 5.3:+28507537 | None:intergenic |
| TCTTATCAAAGACTATGGAG+AGG | 0.706196 | 5.3:-28507216 | MS.gene070576:CDS |
| GTACTTGAAGGTTGGCATGG+TGG | 0.707747 | 5.3:-28506885 | MS.gene070576:CDS |
| ACAAGTACAAGATTACAAGG+GGG | 0.810721 | 5.3:-28507361 | MS.gene070576:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTGTACAATTTTGTTA+AGG | - | chr5.3:28507533-28507552 | MS.gene070576:CDS | 15.0% |
| !! | AAATATCTTATCAAAGACTA+TGG | - | chr5.3:28507463-28507482 | MS.gene070576:CDS | 20.0% |
| !! | TAGTAGTAGTAATAAAGTTA+AGG | - | chr5.3:28507300-28507319 | MS.gene070576:CDS | 20.0% |
| !! | TCAAATAATACTCATGATTA+TGG | + | chr5.3:28507576-28507595 | None:intergenic | 20.0% |
| !!! | TTAAGGAATTTTAACAATGT+AGG | - | chr5.3:28507550-28507569 | MS.gene070576:CDS | 20.0% |
| ! | ATTGACACAAAACCAATTAT+AGG | - | chr5.3:28507388-28507407 | MS.gene070576:CDS | 25.0% |
| ! | CTTGTGATATTTGTGAAATT+CGG | - | chr5.3:28507929-28507948 | MS.gene070576:CDS | 25.0% |
| ! | TAAAAAGAACTGAATTCAGA+TGG | - | chr5.3:28507038-28507057 | MS.gene070576:CDS | 25.0% |
| ! | TCATGAGTATTATTTGAACA+AGG | - | chr5.3:28507579-28507598 | MS.gene070576:CDS | 25.0% |
| ! | TTCAATGTGATACATTCATA+AGG | + | chr5.3:28507619-28507638 | None:intergenic | 25.0% |
| ! | TTGACACAAAACCAATTATA+GGG | - | chr5.3:28507389-28507408 | MS.gene070576:CDS | 25.0% |
| !! | AGAAGTTGAAAGGAATTTTA+GGG | - | chr5.3:28507669-28507688 | MS.gene070576:CDS | 25.0% |
| !! | CTCATATTTTTCTATGCAAA+AGG | - | chr5.3:28507995-28508014 | MS.gene070576:CDS | 25.0% |
| !! | CTTTTGCATAGAAAAATATG+AGG | + | chr5.3:28507997-28508016 | None:intergenic | 25.0% |
| !! | TAGAAGTTGAAAGGAATTTT+AGG | - | chr5.3:28507668-28507687 | MS.gene070576:CDS | 25.0% |
| !! | TCTGAATTCAGTTCTTTTTA+AGG | + | chr5.3:28507038-28507057 | None:intergenic | 25.0% |
| !!! | AATTTTAGGGAAATCTATTG+GGG | - | chr5.3:28507682-28507701 | MS.gene070576:CDS | 25.0% |
| !!! | GAATTTTAGGGAAATCTATT+GGG | - | chr5.3:28507681-28507700 | MS.gene070576:CDS | 25.0% |
| AAATCCCATTAATCTTCCAA+AGG | - | chr5.3:28506828-28506847 | MS.gene070576:CDS | 30.0% | |
| AATGTGATACATTCATAAGG+TGG | + | chr5.3:28507616-28507635 | None:intergenic | 30.0% | |
| ACTTAAAGCTAGAAGTTGAA+AGG | - | chr5.3:28507659-28507678 | MS.gene070576:CDS | 30.0% | |
| AGAAATTCTGACCCTATAAT+TGG | + | chr5.3:28507403-28507422 | None:intergenic | 30.0% | |
| ATTTCTTTCAGCTATACCAT+TGG | - | chr5.3:28507417-28507436 | MS.gene070576:CDS | 30.0% | |
| GATTAATGGGATTTCATGAT+TGG | + | chr5.3:28506822-28506841 | None:intergenic | 30.0% | |
| GGAATTTGATGAATGCAAAA+GGG | - | chr5.3:28507734-28507753 | MS.gene070576:CDS | 30.0% | |
| ! | AAAGGGAATGAAATGGTTTT+CGG | - | chr5.3:28507751-28507770 | MS.gene070576:CDS | 30.0% |
| ! | TTATTGCTTCTATGGCTTTT+TGG | + | chr5.3:28506757-28506776 | None:intergenic | 30.0% |
| !! | ATTTTAGGGAAATCTATTGG+GGG | - | chr5.3:28507683-28507702 | MS.gene070576:CDS | 30.0% |
| !! | GGAATTTTAGGGAAATCTAT+TGG | - | chr5.3:28507680-28507699 | MS.gene070576:CDS | 30.0% |
| !!! | GATTTTGTTTTGAAGTCACT+AGG | - | chr5.3:28507121-28507140 | MS.gene070576:CDS | 30.0% |
| ACAAGTACAAGATTACAAGG+GGG | - | chr5.3:28507323-28507342 | MS.gene070576:CDS | 35.0% | |
| AGGACAAGTACAAGATTACA+AGG | - | chr5.3:28507320-28507339 | MS.gene070576:CDS | 35.0% | |
| ATACATTCATAAGGTGGCAT+TGG | + | chr5.3:28507610-28507629 | None:intergenic | 35.0% | |
| ATGGAACTAAGACTTGTGAA+TGG | - | chr5.3:28506650-28506669 | MS.gene070576:CDS | 35.0% | |
| CATGATTGGAATTTGCAATG+TGG | + | chr5.3:28506808-28506827 | None:intergenic | 35.0% | |
| CATGCTTCTTATTGCTTCTA+TGG | + | chr5.3:28506765-28506784 | None:intergenic | 35.0% | |
| GAAAACTTGTACTTGAAGGT+TGG | - | chr5.3:28507791-28507810 | MS.gene070576:CDS | 35.0% | |
| GAATGCAAAAGGGAATGAAA+TGG | - | chr5.3:28507744-28507763 | MS.gene070576:CDS | 35.0% | |
| GACAAGTACAAGATTACAAG+GGG | - | chr5.3:28507322-28507341 | MS.gene070576:CDS | 35.0% | |
| GCATTCATCAAATTCCCATT+TGG | + | chr5.3:28507730-28507749 | None:intergenic | 35.0% | |
| GGACAAGTACAAGATTACAA+GGG | - | chr5.3:28507321-28507340 | MS.gene070576:CDS | 35.0% | |
| GGGAATTTGATGAATGCAAA+AGG | - | chr5.3:28507733-28507752 | MS.gene070576:CDS | 35.0% | |
| GGTTGAGCAAATATGTGAAA+GGG | - | chr5.3:28507840-28507859 | MS.gene070576:CDS | 35.0% | |
| TCTTATCAAAGACTATGGAG+AGG | - | chr5.3:28507468-28507487 | MS.gene070576:CDS | 35.0% | |
| TGAGGAACTTCTTCATCATT+TGG | + | chr5.3:28507979-28507998 | None:intergenic | 35.0% | |
| TGGTGAAATGGGAATCAATA+TGG | - | chr5.3:28507819-28507838 | MS.gene070576:CDS | 35.0% | |
| TGGTTGAGCAAATATGTGAA+AGG | - | chr5.3:28507839-28507858 | MS.gene070576:CDS | 35.0% | |
| TGTGGAACTAAAGAAGATGA+TGG | - | chr5.3:28507892-28507911 | MS.gene070576:CDS | 35.0% | |
| ! | AAATTTGGTCGAGGATGTTT+TGG | - | chr5.3:28506713-28506732 | MS.gene070576:CDS | 35.0% |
| ! | AAGGGAATGAAATGGTTTTC+GGG | - | chr5.3:28507752-28507771 | MS.gene070576:CDS | 35.0% |
| ! | GGTACCTTTGGAAGATTAAT+GGG | + | chr5.3:28506835-28506854 | None:intergenic | 35.0% |
| ! | TACTCCAACACTTTTGTAAC+CGG | + | chr5.3:28507190-28507209 | None:intergenic | 35.0% |
| ! | TGGTACCTTTGGAAGATTAA+TGG | + | chr5.3:28506836-28506855 | None:intergenic | 35.0% |
| !! | TTGCCATTTCGATCCTTTTA+GGG | + | chr5.3:28506997-28507016 | None:intergenic | 35.0% |
| AAAGGATCGAAATGGCAACA+CGG | - | chr5.3:28506999-28507018 | MS.gene070576:CDS | 40.0% | |
| AATGTTTACCCTTGCCATGA+AGG | - | chr5.3:28507229-28507248 | MS.gene070576:CDS | 40.0% | |
| ACATGTTAGAGCTCAAGTCA+CGG | - | chr5.3:28506903-28506922 | MS.gene070576:CDS | 40.0% | |
| AGAATTATCCTAGCTGCCAA+TGG | + | chr5.3:28507436-28507455 | None:intergenic | 40.0% | |
| AGGAACCAATGCATGTTTCA+CGG | + | chr5.3:28506934-28506953 | None:intergenic | 40.0% | |
| ATGTGAAAGGGATCCAAAGA+AGG | - | chr5.3:28507852-28507871 | MS.gene070576:CDS | 40.0% | |
| ATGTTTACCCTTGCCATGAA+GGG | - | chr5.3:28507230-28507249 | MS.gene070576:CDS | 40.0% | |
| GATCCTAACTCAACATGCAA+AGG | + | chr5.3:28507496-28507515 | None:intergenic | 40.0% | |
| GGTGGAAAACTTGTACTTGA+AGG | - | chr5.3:28507787-28507806 | MS.gene070576:CDS | 40.0% | |
| GTAGTGAAATAAGTCCCCAA+GGG | + | chr5.3:28506885-28506904 | None:intergenic | 40.0% | |
| GTTCCTTTGCATGTTGAGTT+AGG | - | chr5.3:28507490-28507509 | MS.gene070576:CDS | 40.0% | |
| TACTCATAACCAACCCTTCA+TGG | + | chr5.3:28507246-28507265 | None:intergenic | 40.0% | |
| TAGTCGAAACAAATTGCCGT+TGG | - | chr5.3:28506969-28506988 | MS.gene070576:CDS | 40.0% | |
| TGGTGTGTGAGTAAGTATAG+TGG | + | chr5.3:28506788-28506807 | None:intergenic | 40.0% | |
| TGTAGTGAAATAAGTCCCCA+AGG | + | chr5.3:28506886-28506905 | None:intergenic | 40.0% | |
| TGTGAAAGGGATCCAAAGAA+GGG | - | chr5.3:28507853-28507872 | MS.gene070576:CDS | 40.0% | |
| ! | ACGGCAATTTGTTTCGACTA+AGG | + | chr5.3:28506969-28506988 | None:intergenic | 40.0% |
| ! | AGAAGATGATGGTGAGAGAA+TGG | - | chr5.3:28507903-28507922 | MS.gene070576:CDS | 40.0% |
| ! | GAATCCGGTTACAAAAGTGT+TGG | - | chr5.3:28507183-28507202 | MS.gene070576:CDS | 40.0% |
| ! | GTTTTGTGGTGCAACCAAAT+GGG | - | chr5.3:28507713-28507732 | MS.gene070576:CDS | 40.0% |
| !! | AGTTTTGTGGTGCAACCAAA+TGG | - | chr5.3:28507712-28507731 | MS.gene070576:CDS | 40.0% |
| !! | CAGAAAGTGTTTGGTACCTT+TGG | + | chr5.3:28506847-28506866 | None:intergenic | 40.0% |
| !! | GAGAGTGATCAGAAAGTGTT+TGG | + | chr5.3:28506856-28506875 | None:intergenic | 40.0% |
| !! | GTTGCCATTTCGATCCTTTT+AGG | + | chr5.3:28506998-28507017 | None:intergenic | 40.0% |
| !! | GTTTTCGGGATGATTGAAGT+GGG | - | chr5.3:28507766-28507785 | MS.gene070576:CDS | 40.0% |
| !! | TGCCATTTCGATCCTTTTAG+GGG | + | chr5.3:28506996-28507015 | None:intergenic | 40.0% |
| AAGGATCGAAATGGCAACAC+GGG | - | chr5.3:28507000-28507019 | MS.gene070576:CDS | 45.0% | |
| ATAACCAACCCTTCATGGCA+AGG | + | chr5.3:28507241-28507260 | None:intergenic | 45.0% | |
| ATCACTCTCTTGTCACCCTT+GGG | - | chr5.3:28506867-28506886 | MS.gene070576:CDS | 45.0% | |
| CACTCCACAATTCCCTTCTT+TGG | + | chr5.3:28507868-28507887 | None:intergenic | 45.0% | |
| CCAAGTAGTTTCCAACAACG+TGG | + | chr5.3:28507150-28507169 | None:intergenic | 45.0% | |
| CCACGTTGTTGGAAACTACT+TGG | - | chr5.3:28507147-28507166 | MS.gene070576:CDS | 45.0% | |
| CTTGTACTTGAAGGTTGGCA+TGG | - | chr5.3:28507796-28507815 | MS.gene070576:CDS | 45.0% | |
| GAACCAATGCATGTTTCACG+GGG | + | chr5.3:28506932-28506951 | None:intergenic | 45.0% | |
| GAATAGCATACAGTGAGCCA+TGG | - | chr5.3:28506672-28506691 | MS.gene070576:CDS | 45.0% | |
| GGAACCAATGCATGTTTCAC+GGG | + | chr5.3:28506933-28506952 | None:intergenic | 45.0% | |
| GGAATTGTGGAGTGCATTTG+TGG | - | chr5.3:28507874-28507893 | MS.gene070576:CDS | 45.0% | |
| GGATCCAAAGAAGGGAATTG+TGG | - | chr5.3:28507861-28507880 | MS.gene070576:CDS | 45.0% | |
| GGGAAATCTATTGGGGGTTA+AGG | - | chr5.3:28507689-28507708 | MS.gene070576:CDS | 45.0% | |
| GGTCGTTGGGGATACAAATT+TGG | - | chr5.3:28506698-28506717 | MS.gene070576:CDS | 45.0% | |
| GTCCCCTAAAAGGATCGAAA+TGG | - | chr5.3:28506991-28507010 | MS.gene070576:CDS | 45.0% | |
| TAACCAACCCTTCATGGCAA+GGG | + | chr5.3:28507240-28507259 | None:intergenic | 45.0% | |
| TACAAGGGGGCAACTTATGA+AGG | - | chr5.3:28507336-28507355 | MS.gene070576:CDS | 45.0% | |
| TCACTAGGTAACCACGTTGT+TGG | - | chr5.3:28507136-28507155 | MS.gene070576:CDS | 45.0% | |
| TGGGGATACAAATTTGGTCG+AGG | - | chr5.3:28506704-28506723 | MS.gene070576:CDS | 45.0% | |
| ! | TTGGGGGTTAAGGAGTTTTG+TGG | - | chr5.3:28507699-28507718 | MS.gene070576:CDS | 45.0% |
| !! | GGTTTTCGGGATGATTGAAG+TGG | - | chr5.3:28507765-28507784 | MS.gene070576:CDS | 45.0% |
| !! | TATCGGAGACACTGGTTTGT+TGG | - | chr5.3:28507099-28507118 | MS.gene070576:CDS | 45.0% |
| ATTGCCGTTGGTCCCCTAAA+AGG | - | chr5.3:28506981-28507000 | MS.gene070576:CDS | 50.0% | |
| CAGCTATACCATTGGCAGCT+AGG | - | chr5.3:28507425-28507444 | MS.gene070576:CDS | 50.0% | |
| CTTCCCCGTGAAACATGCAT+TGG | - | chr5.3:28506926-28506945 | MS.gene070576:CDS | 50.0% | |
| GATCACTCTCTTGTCACCCT+TGG | - | chr5.3:28506866-28506885 | MS.gene070576:CDS | 50.0% | |
| GCATACAGTGAGCCATGGTT+TGG | - | chr5.3:28506677-28506696 | MS.gene070576:CDS | 50.0% | |
| GGTTCGTCGAAGCTTGAATC+CGG | - | chr5.3:28507168-28507187 | MS.gene070576:CDS | 50.0% | |
| GTACTTGAAGGTTGGCATGG+TGG | - | chr5.3:28507799-28507818 | MS.gene070576:CDS | 50.0% | |
| TATCCCCAACGACCAAACCA+TGG | + | chr5.3:28506692-28506711 | None:intergenic | 50.0% | |
| TCACTCTCTTGTCACCCTTG+GGG | - | chr5.3:28506868-28506887 | MS.gene070576:CDS | 50.0% | |
| TTACCCTTGCCATGAAGGGT+TGG | - | chr5.3:28507234-28507253 | MS.gene070576:CDS | 50.0% | |
| TTCGGGATGATTGAAGTGGG+TGG | - | chr5.3:28507769-28507788 | MS.gene070576:CDS | 50.0% | |
| ! | AGGTTGGCATGGTGGTGAAA+TGG | - | chr5.3:28507807-28507826 | MS.gene070576:CDS | 50.0% |
| ! | GACTAAGGCGCTTGTGTTGA+AGG | + | chr5.3:28506954-28506973 | None:intergenic | 50.0% |
| ! | GGTTGGCATGGTGGTGAAAT+GGG | - | chr5.3:28507808-28507827 | MS.gene070576:CDS | 50.0% |
| !! | CGATCCTTTTAGGGGACCAA+CGG | + | chr5.3:28506988-28507007 | None:intergenic | 50.0% |
| !! | TGAGCCATGGTTTGGTCGTT+GGG | - | chr5.3:28506685-28506704 | MS.gene070576:CDS | 50.0% |
| CGCGCTTATATCGGAGACAC+TGG | - | chr5.3:28507091-28507110 | MS.gene070576:CDS | 55.0% | |
| GATGCCGCACGCGCTTATAT+CGG | - | chr5.3:28507082-28507101 | MS.gene070576:CDS | 55.0% | |
| GGCAACACGGGTCATTGTTG+AGG | - | chr5.3:28507012-28507031 | MS.gene070576:CDS | 55.0% | |
| GTCTCCGATATAAGCGCGTG+CGG | + | chr5.3:28507089-28507108 | None:intergenic | 55.0% | |
| !! | GAGCCATGGTTTGGTCGTTG+GGG | - | chr5.3:28506686-28506705 | MS.gene070576:CDS | 55.0% |
| !! | GTGAGCCATGGTTTGGTCGT+TGG | - | chr5.3:28506684-28506703 | MS.gene070576:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 28506650 | 28508056 | 28506650 | ID=MS.gene070576 |
| chr5.3 | mRNA | 28506650 | 28508056 | 28506650 | ID=MS.gene070576.t1;Parent=MS.gene070576 |
| chr5.3 | exon | 28506650 | 28508056 | 28506650 | ID=MS.gene070576.t1.exon1;Parent=MS.gene070576.t1 |
| chr5.3 | CDS | 28506650 | 28508056 | 28506650 | ID=cds.MS.gene070576.t1;Parent=MS.gene070576.t1 |
| Gene Sequence |
| Protein sequence |
