Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070613.t1 | PNY03321.1 | 69.7 | 66 | 20 | 0 | 1 | 66 | 185 | 250 | 3.40E-20 | 107.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070613.t1 | Q2V419 | 55.7 | 61 | 27 | 0 | 6 | 66 | 186 | 246 | 1.7e-12 | 72.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070613.t1 | A0A2K3NJX4 | 69.7 | 66 | 20 | 0 | 1 | 66 | 185 | 250 | 2.5e-20 | 107.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070613.t1 | MTR_8g464430 | 92.727 | 55 | 3 | 1 | 1 | 54 | 1 | 55 | 9.36e-30 | 102 |
MS.gene070613.t1 | MTR_4g007750 | 55.932 | 59 | 25 | 1 | 6 | 64 | 186 | 243 | 2.43e-16 | 70.9 |
MS.gene070613.t1 | MTR_3g040810 | 57.143 | 49 | 21 | 0 | 6 | 54 | 203 | 251 | 1.23e-15 | 69.7 |
MS.gene070613.t1 | MTR_3g085650 | 53.125 | 64 | 30 | 0 | 6 | 69 | 581 | 644 | 1.86e-15 | 68.9 |
MS.gene070613.t1 | MTR_3g085650 | 53.125 | 64 | 30 | 0 | 6 | 69 | 581 | 644 | 1.86e-15 | 68.9 |
MS.gene070613.t1 | MTR_3g085650 | 53.125 | 64 | 30 | 0 | 6 | 69 | 581 | 644 | 1.86e-15 | 68.9 |
MS.gene070613.t1 | MTR_3g085650 | 53.125 | 64 | 30 | 0 | 6 | 69 | 581 | 644 | 1.87e-15 | 68.9 |
MS.gene070613.t1 | MTR_3g040520 | 57.143 | 49 | 21 | 0 | 6 | 54 | 205 | 253 | 2.71e-15 | 68.6 |
MS.gene070613.t1 | MTR_2g032060 | 49.231 | 65 | 33 | 0 | 6 | 70 | 169 | 233 | 3.66e-15 | 67.8 |
MS.gene070613.t1 | MTR_8g080190 | 53.125 | 64 | 30 | 0 | 6 | 69 | 550 | 613 | 4.05e-15 | 68.2 |
MS.gene070613.t1 | MTR_8g080190 | 53.125 | 64 | 30 | 0 | 6 | 69 | 550 | 613 | 4.06e-15 | 68.2 |
MS.gene070613.t1 | MTR_4g094430 | 47.692 | 65 | 34 | 0 | 6 | 70 | 169 | 233 | 4.53e-15 | 67.4 |
MS.gene070613.t1 | MTR_4g103810 | 57.143 | 49 | 21 | 0 | 6 | 54 | 275 | 323 | 2.95e-14 | 65.5 |
MS.gene070613.t1 | MTR_4g103810 | 57.143 | 49 | 21 | 0 | 6 | 54 | 385 | 433 | 3.03e-14 | 65.5 |
MS.gene070613.t1 | MTR_7g011800 | 48.214 | 56 | 29 | 0 | 6 | 61 | 286 | 341 | 3.98e-14 | 65.5 |
MS.gene070613.t1 | MTR_6g013030 | 46.429 | 56 | 30 | 0 | 6 | 61 | 276 | 331 | 8.91e-14 | 64.3 |
MS.gene070613.t1 | MTR_6g087920 | 46.429 | 56 | 30 | 0 | 1 | 56 | 275 | 330 | 1.07e-13 | 63.9 |
MS.gene070613.t1 | MTR_4g061330 | 58.333 | 48 | 20 | 0 | 6 | 53 | 10 | 57 | 1.21e-13 | 62.0 |
MS.gene070613.t1 | MTR_4g061320 | 58.333 | 48 | 20 | 0 | 6 | 53 | 206 | 253 | 1.32e-13 | 63.5 |
MS.gene070613.t1 | MTR_4g109090 | 46.429 | 56 | 30 | 0 | 6 | 61 | 123 | 178 | 2.40e-13 | 63.2 |
MS.gene070613.t1 | MTR_4g109090 | 46.429 | 56 | 30 | 0 | 6 | 61 | 271 | 326 | 2.42e-13 | 63.2 |
MS.gene070613.t1 | MTR_1g075610 | 47.541 | 61 | 32 | 0 | 6 | 66 | 191 | 251 | 2.58e-13 | 62.8 |
MS.gene070613.t1 | MTR_5g010030 | 62.500 | 40 | 15 | 0 | 6 | 45 | 207 | 246 | 3.30e-13 | 62.8 |
MS.gene070613.t1 | MTR_3g460950 | 60.000 | 40 | 16 | 0 | 6 | 45 | 199 | 238 | 3.79e-13 | 62.4 |
MS.gene070613.t1 | MTR_3g060330 | 60.000 | 40 | 16 | 0 | 6 | 45 | 199 | 238 | 3.79e-13 | 62.4 |
MS.gene070613.t1 | MTR_8g103240 | 52.830 | 53 | 25 | 0 | 1 | 53 | 288 | 340 | 4.54e-13 | 62.4 |
MS.gene070613.t1 | MTR_8g098845 | 60.000 | 40 | 16 | 0 | 6 | 45 | 218 | 257 | 6.77e-13 | 61.6 |
MS.gene070613.t1 | MTR_3g096960 | 60.526 | 38 | 15 | 0 | 6 | 43 | 196 | 233 | 7.25e-13 | 61.6 |
MS.gene070613.t1 | MTR_5g008860 | 48.276 | 58 | 30 | 0 | 6 | 63 | 306 | 363 | 8.51e-13 | 61.6 |
MS.gene070613.t1 | MTR_7g076030 | 49.091 | 55 | 28 | 0 | 6 | 60 | 307 | 361 | 2.74e-12 | 60.1 |
MS.gene070613.t1 | MTR_4g087620 | 57.500 | 40 | 17 | 0 | 6 | 45 | 221 | 260 | 3.01e-12 | 59.7 |
MS.gene070613.t1 | MTR_2g083940 | 47.273 | 55 | 29 | 0 | 6 | 60 | 254 | 308 | 4.94e-12 | 59.3 |
MS.gene070613.t1 | MTR_1g084760 | 60.526 | 38 | 15 | 0 | 6 | 43 | 241 | 278 | 5.32e-12 | 59.3 |
MS.gene070613.t1 | MTR_2g083940 | 47.273 | 55 | 29 | 0 | 6 | 60 | 200 | 254 | 5.69e-12 | 58.9 |
MS.gene070613.t1 | MTR_4g087620 | 57.500 | 40 | 17 | 0 | 6 | 45 | 221 | 260 | 5.81e-12 | 58.9 |
MS.gene070613.t1 | MTR_7g076030 | 49.091 | 55 | 28 | 0 | 6 | 60 | 200 | 254 | 6.61e-12 | 58.9 |
MS.gene070613.t1 | MTR_2g090405 | 43.103 | 58 | 33 | 0 | 6 | 63 | 307 | 364 | 1.28e-11 | 58.2 |
MS.gene070613.t1 | MTR_2g005620 | 63.158 | 38 | 14 | 0 | 6 | 43 | 256 | 293 | 1.39e-11 | 58.2 |
MS.gene070613.t1 | MTR_7g110060 | 60.526 | 38 | 15 | 0 | 6 | 43 | 241 | 278 | 1.42e-11 | 58.2 |
MS.gene070613.t1 | MTR_2g016490 | 47.273 | 55 | 29 | 0 | 6 | 60 | 206 | 260 | 1.44e-11 | 58.2 |
MS.gene070613.t1 | MTR_1g098300 | 48.980 | 49 | 25 | 0 | 6 | 54 | 292 | 340 | 1.46e-11 | 58.2 |
MS.gene070613.t1 | MTR_7g078690 | 57.500 | 40 | 17 | 0 | 6 | 45 | 204 | 243 | 1.68e-11 | 57.8 |
MS.gene070613.t1 | MTR_2g085200 | 44.828 | 58 | 32 | 0 | 6 | 63 | 300 | 357 | 2.11e-11 | 57.4 |
MS.gene070613.t1 | MTR_7g110060 | 60.526 | 38 | 15 | 0 | 6 | 43 | 241 | 278 | 2.52e-11 | 57.4 |
MS.gene070613.t1 | MTR_4g118780 | 48.980 | 49 | 25 | 0 | 6 | 54 | 270 | 318 | 3.03e-11 | 57.0 |
MS.gene070613.t1 | MTR_8g028720 | 57.500 | 40 | 17 | 0 | 6 | 45 | 203 | 242 | 4.01e-11 | 56.6 |
MS.gene070613.t1 | MTR_1g086370 | 57.895 | 38 | 16 | 0 | 6 | 43 | 208 | 245 | 4.19e-11 | 56.6 |
MS.gene070613.t1 | MTR_1g086370 | 57.895 | 38 | 16 | 0 | 6 | 43 | 241 | 278 | 5.46e-11 | 56.2 |
MS.gene070613.t1 | MTR_2g020210 | 43.103 | 58 | 33 | 0 | 6 | 63 | 268 | 325 | 5.54e-11 | 56.2 |
MS.gene070613.t1 | MTR_8g099770 | 48.980 | 49 | 25 | 0 | 6 | 54 | 256 | 304 | 7.23e-11 | 55.8 |
MS.gene070613.t1 | MTR_3g112210 | 57.500 | 40 | 17 | 0 | 6 | 45 | 199 | 238 | 7.44e-11 | 55.8 |
MS.gene070613.t1 | MTR_8g086000 | 45.455 | 55 | 30 | 0 | 6 | 60 | 242 | 296 | 8.32e-11 | 55.8 |
MS.gene070613.t1 | MTR_8g086000 | 45.455 | 55 | 30 | 0 | 6 | 60 | 199 | 253 | 8.86e-11 | 55.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070613.t1 | AT2G38620 | 55.738 | 61 | 27 | 0 | 6 | 66 | 124 | 184 | 7.48e-18 | 74.3 |
MS.gene070613.t1 | AT2G38620 | 55.738 | 61 | 27 | 0 | 6 | 66 | 186 | 246 | 1.45e-17 | 74.3 |
MS.gene070613.t1 | AT2G38620 | 63.265 | 49 | 18 | 0 | 6 | 54 | 186 | 234 | 5.49e-17 | 72.4 |
MS.gene070613.t1 | AT2G38620 | 63.265 | 49 | 18 | 0 | 6 | 54 | 186 | 234 | 5.49e-17 | 72.4 |
MS.gene070613.t1 | AT3G54180 | 52.459 | 61 | 29 | 0 | 6 | 66 | 184 | 244 | 2.51e-16 | 70.9 |
MS.gene070613.t1 | AT3G48750 | 54.545 | 55 | 25 | 0 | 6 | 60 | 169 | 223 | 3.03e-15 | 67.8 |
MS.gene070613.t1 | AT3G01085 | 52.727 | 55 | 26 | 0 | 6 | 60 | 281 | 335 | 8.72e-15 | 67.4 |
MS.gene070613.t1 | AT3G01085 | 52.727 | 55 | 26 | 0 | 6 | 60 | 281 | 335 | 8.72e-15 | 67.4 |
MS.gene070613.t1 | AT3G01085 | 52.727 | 55 | 26 | 0 | 6 | 60 | 281 | 335 | 8.72e-15 | 67.4 |
MS.gene070613.t1 | AT1G76540 | 55.102 | 49 | 22 | 0 | 6 | 54 | 187 | 235 | 2.17e-14 | 65.9 |
MS.gene070613.t1 | AT4G11330 | 65.000 | 40 | 14 | 0 | 6 | 45 | 209 | 248 | 2.62e-14 | 65.9 |
MS.gene070613.t1 | AT1G07880 | 62.500 | 48 | 18 | 0 | 6 | 53 | 199 | 246 | 2.76e-14 | 65.1 |
MS.gene070613.t1 | AT1G67580 | 51.562 | 64 | 31 | 0 | 6 | 69 | 571 | 634 | 2.83e-14 | 65.9 |
MS.gene070613.t1 | AT1G67580 | 51.562 | 64 | 31 | 0 | 6 | 69 | 571 | 634 | 2.83e-14 | 65.9 |
MS.gene070613.t1 | AT1G20930 | 53.061 | 49 | 23 | 0 | 6 | 54 | 189 | 237 | 3.24e-14 | 65.1 |
MS.gene070613.t1 | AT5G63370 | 46.154 | 65 | 35 | 0 | 6 | 70 | 467 | 531 | 4.13e-14 | 65.5 |
MS.gene070613.t1 | AT5G63370 | 46.154 | 65 | 35 | 0 | 6 | 70 | 467 | 531 | 4.13e-14 | 65.5 |
MS.gene070613.t1 | AT3G59790 | 63.415 | 41 | 15 | 0 | 6 | 46 | 226 | 266 | 4.17e-14 | 65.1 |
MS.gene070613.t1 | AT5G63370 | 46.154 | 65 | 35 | 0 | 6 | 70 | 467 | 531 | 4.27e-14 | 65.1 |
MS.gene070613.t1 | AT5G63370 | 46.154 | 65 | 35 | 0 | 6 | 70 | 467 | 531 | 4.27e-14 | 65.1 |
MS.gene070613.t1 | AT5G63370 | 46.154 | 65 | 35 | 0 | 6 | 70 | 467 | 531 | 4.27e-14 | 65.1 |
MS.gene070613.t1 | AT5G63370 | 46.154 | 65 | 35 | 0 | 6 | 70 | 467 | 531 | 4.27e-14 | 65.1 |
MS.gene070613.t1 | AT5G63370 | 46.154 | 65 | 35 | 0 | 6 | 70 | 467 | 531 | 4.27e-14 | 65.1 |
MS.gene070613.t1 | AT1G07880 | 62.500 | 48 | 18 | 0 | 6 | 53 | 199 | 246 | 5.47e-14 | 64.7 |
MS.gene070613.t1 | AT5G63610 | 43.662 | 71 | 32 | 1 | 6 | 68 | 201 | 271 | 5.88e-14 | 64.7 |
MS.gene070613.t1 | AT5G63370 | 46.154 | 65 | 35 | 0 | 6 | 70 | 333 | 397 | 1.07e-13 | 63.9 |
MS.gene070613.t1 | AT5G63370 | 46.154 | 65 | 35 | 0 | 6 | 70 | 333 | 397 | 1.39e-13 | 63.9 |
MS.gene070613.t1 | AT5G63370 | 46.154 | 65 | 35 | 0 | 6 | 70 | 333 | 397 | 1.39e-13 | 63.9 |
MS.gene070613.t1 | AT1G73690 | 45.902 | 61 | 33 | 0 | 6 | 66 | 174 | 234 | 1.61e-13 | 63.5 |
MS.gene070613.t1 | AT5G39420 | 53.061 | 49 | 23 | 0 | 6 | 54 | 271 | 319 | 1.61e-13 | 63.5 |
MS.gene070613.t1 | AT1G74330 | 44.828 | 58 | 32 | 0 | 6 | 63 | 289 | 346 | 1.89e-13 | 63.5 |
MS.gene070613.t1 | AT1G74330 | 44.828 | 58 | 32 | 0 | 6 | 63 | 289 | 346 | 1.89e-13 | 63.5 |
MS.gene070613.t1 | AT1G74330 | 44.828 | 58 | 32 | 0 | 6 | 63 | 289 | 346 | 1.89e-13 | 63.5 |
MS.gene070613.t1 | AT1G18040 | 43.750 | 64 | 36 | 0 | 6 | 69 | 175 | 238 | 3.06e-13 | 62.8 |
MS.gene070613.t1 | AT1G18670 | 44.828 | 58 | 32 | 0 | 6 | 63 | 298 | 355 | 5.02e-13 | 62.4 |
MS.gene070613.t1 | AT1G18670 | 44.828 | 58 | 32 | 0 | 6 | 63 | 298 | 355 | 5.03e-13 | 62.4 |
MS.gene070613.t1 | AT1G18670 | 44.828 | 58 | 32 | 0 | 6 | 63 | 298 | 355 | 5.03e-13 | 62.4 |
MS.gene070613.t1 | AT5G10270 | 43.478 | 69 | 33 | 1 | 6 | 68 | 206 | 274 | 5.27e-13 | 62.0 |
MS.gene070613.t1 | AT1G01560 | 56.250 | 48 | 21 | 0 | 6 | 53 | 206 | 253 | 7.25e-13 | 61.2 |
MS.gene070613.t1 | AT1G01560 | 56.250 | 48 | 21 | 0 | 6 | 53 | 206 | 253 | 7.25e-13 | 61.2 |
MS.gene070613.t1 | AT1G01560 | 56.250 | 48 | 21 | 0 | 6 | 53 | 206 | 253 | 1.19e-12 | 60.8 |
MS.gene070613.t1 | AT4G18710 | 47.458 | 59 | 30 | 1 | 6 | 64 | 200 | 257 | 1.48e-12 | 60.5 |
MS.gene070613.t1 | AT1G01560 | 56.250 | 48 | 21 | 0 | 6 | 53 | 206 | 253 | 2.43e-12 | 60.1 |
MS.gene070613.t1 | AT1G33770 | 51.020 | 49 | 24 | 0 | 6 | 54 | 307 | 355 | 3.14e-12 | 60.1 |
MS.gene070613.t1 | AT3G45640 | 56.098 | 41 | 18 | 0 | 6 | 46 | 204 | 244 | 3.40e-12 | 59.7 |
MS.gene070613.t1 | AT4G28980 | 55.814 | 43 | 19 | 0 | 1 | 43 | 293 | 335 | 4.33e-12 | 59.7 |
MS.gene070613.t1 | AT4G28980 | 55.814 | 43 | 19 | 0 | 1 | 43 | 293 | 335 | 4.33e-12 | 59.7 |
MS.gene070613.t1 | AT4G28980 | 55.814 | 43 | 19 | 0 | 1 | 43 | 293 | 335 | 4.33e-12 | 59.7 |
MS.gene070613.t1 | AT2G43790 | 56.098 | 41 | 18 | 0 | 6 | 46 | 229 | 269 | 4.64e-12 | 59.3 |
MS.gene070613.t1 | AT4G36450 | 60.000 | 40 | 16 | 0 | 6 | 45 | 196 | 235 | 5.35e-12 | 59.3 |
MS.gene070613.t1 | AT1G57870 | 63.158 | 38 | 14 | 0 | 6 | 43 | 248 | 285 | 9.06e-12 | 58.5 |
MS.gene070613.t1 | AT2G18170 | 60.000 | 40 | 16 | 0 | 6 | 45 | 199 | 238 | 9.07e-12 | 58.5 |
MS.gene070613.t1 | AT4G18710 | 47.273 | 55 | 29 | 0 | 6 | 60 | 206 | 260 | 1.04e-11 | 58.5 |
MS.gene070613.t1 | AT1G57870 | 63.158 | 38 | 14 | 0 | 6 | 43 | 248 | 285 | 1.04e-11 | 58.5 |
MS.gene070613.t1 | AT1G57870 | 63.158 | 38 | 14 | 0 | 6 | 43 | 248 | 285 | 1.04e-11 | 58.5 |
MS.gene070613.t1 | AT1G57870 | 63.158 | 38 | 14 | 0 | 6 | 43 | 248 | 285 | 1.04e-11 | 58.5 |
MS.gene070613.t1 | AT3G05840 | 60.526 | 38 | 15 | 0 | 6 | 43 | 239 | 276 | 1.12e-11 | 58.5 |
MS.gene070613.t1 | AT3G05840 | 60.526 | 38 | 15 | 0 | 6 | 43 | 239 | 276 | 1.12e-11 | 58.5 |
MS.gene070613.t1 | AT5G26751 | 60.526 | 38 | 15 | 0 | 6 | 43 | 235 | 272 | 1.15e-11 | 58.2 |
MS.gene070613.t1 | AT5G64960 | 51.020 | 49 | 24 | 0 | 6 | 54 | 206 | 254 | 1.15e-11 | 58.2 |
MS.gene070613.t1 | AT2G46070 | 57.500 | 40 | 17 | 0 | 6 | 45 | 207 | 246 | 1.17e-11 | 58.2 |
MS.gene070613.t1 | AT1G54610 | 44.828 | 58 | 32 | 0 | 6 | 63 | 284 | 341 | 1.18e-11 | 58.2 |
MS.gene070613.t1 | AT1G54610 | 44.828 | 58 | 32 | 0 | 6 | 63 | 284 | 341 | 1.18e-11 | 58.2 |
MS.gene070613.t1 | AT1G54610 | 44.828 | 58 | 32 | 0 | 6 | 63 | 284 | 341 | 1.18e-11 | 58.2 |
MS.gene070613.t1 | AT2G46070 | 57.500 | 40 | 17 | 0 | 6 | 45 | 241 | 280 | 1.40e-11 | 58.2 |
MS.gene070613.t1 | AT5G64960 | 51.020 | 49 | 24 | 0 | 6 | 54 | 153 | 201 | 1.45e-11 | 58.2 |
MS.gene070613.t1 | AT2G46070 | 57.500 | 40 | 17 | 0 | 6 | 45 | 207 | 246 | 1.55e-11 | 57.8 |
MS.gene070613.t1 | AT1G10210 | 57.500 | 40 | 17 | 0 | 6 | 45 | 199 | 238 | 1.69e-11 | 57.8 |
MS.gene070613.t1 | AT1G10210 | 57.500 | 40 | 17 | 0 | 6 | 45 | 199 | 238 | 1.69e-11 | 57.8 |
MS.gene070613.t1 | AT1G10210 | 57.500 | 40 | 17 | 0 | 6 | 45 | 199 | 238 | 1.69e-11 | 57.8 |
MS.gene070613.t1 | AT5G50860 | 48.980 | 49 | 25 | 0 | 6 | 54 | 280 | 328 | 2.11e-11 | 57.8 |
MS.gene070613.t1 | AT1G09840 | 60.526 | 38 | 15 | 0 | 6 | 43 | 249 | 286 | 2.15e-11 | 57.4 |
MS.gene070613.t1 | AT1G09840 | 60.526 | 38 | 15 | 0 | 6 | 43 | 249 | 286 | 2.15e-11 | 57.4 |
MS.gene070613.t1 | AT1G09840 | 60.526 | 38 | 15 | 0 | 6 | 43 | 249 | 286 | 2.15e-11 | 57.4 |
MS.gene070613.t1 | AT1G09840 | 60.526 | 38 | 15 | 0 | 6 | 43 | 249 | 286 | 2.15e-11 | 57.4 |
MS.gene070613.t1 | AT1G09840 | 60.526 | 38 | 15 | 0 | 6 | 43 | 249 | 286 | 2.15e-11 | 57.4 |
MS.gene070613.t1 | AT1G09840 | 60.526 | 38 | 15 | 0 | 6 | 43 | 249 | 286 | 2.15e-11 | 57.4 |
MS.gene070613.t1 | AT1G09840 | 60.526 | 38 | 15 | 0 | 6 | 43 | 249 | 286 | 2.15e-11 | 57.4 |
MS.gene070613.t1 | AT1G09840 | 60.526 | 38 | 15 | 0 | 6 | 43 | 249 | 286 | 2.15e-11 | 57.4 |
MS.gene070613.t1 | AT1G09840 | 60.526 | 38 | 15 | 0 | 6 | 43 | 249 | 286 | 2.15e-11 | 57.4 |
MS.gene070613.t1 | AT1G09840 | 60.526 | 38 | 15 | 0 | 6 | 43 | 249 | 286 | 2.15e-11 | 57.4 |
MS.gene070613.t1 | AT5G50860 | 48.980 | 49 | 25 | 0 | 6 | 54 | 280 | 328 | 2.24e-11 | 57.4 |
MS.gene070613.t1 | AT4G01370 | 57.500 | 40 | 17 | 0 | 6 | 45 | 209 | 248 | 2.29e-11 | 57.4 |
MS.gene070613.t1 | AT1G59580 | 57.500 | 40 | 17 | 0 | 6 | 45 | 199 | 238 | 2.66e-11 | 57.4 |
MS.gene070613.t1 | AT1G59580 | 57.500 | 40 | 17 | 0 | 6 | 45 | 199 | 238 | 2.66e-11 | 57.4 |
MS.gene070613.t1 | AT5G14640 | 60.526 | 38 | 15 | 0 | 6 | 43 | 240 | 277 | 2.74e-11 | 57.4 |
MS.gene070613.t1 | AT5G14640 | 60.526 | 38 | 15 | 0 | 6 | 43 | 240 | 277 | 2.74e-11 | 57.4 |
MS.gene070613.t1 | AT1G57700 | 46.939 | 49 | 26 | 0 | 6 | 54 | 312 | 360 | 3.70e-11 | 57.0 |
MS.gene070613.t1 | AT3G61160 | 45.455 | 55 | 30 | 0 | 6 | 60 | 268 | 322 | 3.72e-11 | 57.0 |
MS.gene070613.t1 | AT3G61160 | 45.455 | 55 | 30 | 0 | 6 | 60 | 275 | 329 | 3.74e-11 | 57.0 |
MS.gene070613.t1 | AT3G61160 | 45.455 | 55 | 30 | 0 | 6 | 60 | 268 | 322 | 3.80e-11 | 57.0 |
MS.gene070613.t1 | AT3G61160 | 45.455 | 55 | 30 | 0 | 6 | 60 | 275 | 329 | 4.20e-11 | 56.6 |
MS.gene070613.t1 | AT3G61160 | 45.455 | 55 | 30 | 0 | 6 | 60 | 268 | 322 | 4.72e-11 | 56.6 |
MS.gene070613.t1 | AT1G09600 | 46.939 | 49 | 26 | 0 | 6 | 54 | 329 | 377 | 5.02e-11 | 56.6 |
MS.gene070613.t1 | AT3G61160 | 45.455 | 55 | 30 | 0 | 6 | 60 | 268 | 322 | 5.73e-11 | 56.2 |
MS.gene070613.t1 | AT1G71530 | 43.103 | 58 | 33 | 0 | 6 | 63 | 313 | 370 | 5.73e-11 | 56.2 |
MS.gene070613.t1 | AT1G06390 | 45.455 | 55 | 30 | 0 | 6 | 60 | 236 | 290 | 6.68e-11 | 56.2 |
MS.gene070613.t1 | AT1G06390 | 45.455 | 55 | 30 | 0 | 6 | 60 | 236 | 290 | 6.68e-11 | 56.2 |
MS.gene070613.t1 | AT2G30980 | 45.455 | 55 | 30 | 0 | 6 | 60 | 238 | 292 | 6.96e-11 | 56.2 |
MS.gene070613.t1 | AT1G53050 | 43.103 | 58 | 33 | 0 | 6 | 63 | 300 | 357 | 7.34e-11 | 56.2 |
MS.gene070613.t1 | AT1G53050 | 43.103 | 58 | 33 | 0 | 6 | 63 | 300 | 357 | 7.34e-11 | 56.2 |
MS.gene070613.t1 | AT1G66750 | 48.980 | 49 | 25 | 0 | 6 | 54 | 176 | 224 | 8.13e-11 | 55.8 |
Find 17 sgRNAs with CRISPR-Local
Find 25 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAATTGCAGTTGAGTAAT+TGG | 0.222089 | 8.1:-49758944 | None:intergenic |
AGATATTGGCTGCGATATTT+TGG | 0.233067 | 8.1:+49759040 | MS.gene070613:CDS |
TGCAATTGATATCTGGTCTA+TGG | 0.237092 | 8.1:+49758957 | MS.gene070613:CDS |
GCATATTTGCTGAGATTCTT+AGG | 0.267885 | 8.1:+49758983 | MS.gene070613:CDS |
ACTCAACTGCAATTGATATC+TGG | 0.406313 | 8.1:+49758950 | MS.gene070613:CDS |
TAATGATGAACCGCAGATAT+TGG | 0.411947 | 8.1:+49759026 | MS.gene070613:CDS |
AATACAGGCGCTTGATCAAT+TGG | 0.415765 | 8.1:-49759238 | None:intergenic |
AGGCTCGAACCTCTGTTCAT+TGG | 0.422138 | 8.1:+49759003 | MS.gene070613:CDS |
GTGGAACCCATCAAAAGTTC+AGG | 0.433476 | 8.1:-49758922 | None:intergenic |
AAAACTCAAGCGGTGAATAC+AGG | 0.452010 | 8.1:-49759253 | None:intergenic |
GCAATTGATATCTGGTCTAT+GGG | 0.513239 | 8.1:+49758958 | MS.gene070613:CDS |
AGTTCAGGTGCTTTATAGCA+CGG | 0.527126 | 8.1:-49758907 | None:intergenic |
AATTGCAGTTGAGTAATTGG+TGG | 0.548724 | 8.1:-49758941 | None:intergenic |
ACAGGCGCTTGATCAATTGG+AGG | 0.602420 | 8.1:-49759235 | None:intergenic |
CAGGCGCTTGATCAATTGGA+GGG | 0.612058 | 8.1:-49759234 | None:intergenic |
TCATCATTACCAATGAACAG+AGG | 0.709071 | 8.1:-49759012 | None:intergenic |
AATATCGCAGCCAATATCTG+CGG | 0.714594 | 8.1:-49759036 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAATCATAAAAATAGTTA+TGG | - | chr8.1:49759082-49759101 | None:intergenic | 15.0% |
!!! | TTTTATATGTAAAGCTTGCT+TGG | + | chr8.1:49759143-49759162 | MS.gene070613:intron | 25.0% |
ATCAATTGCAGTTGAGTAAT+TGG | - | chr8.1:49758947-49758966 | None:intergenic | 30.0% | |
AATTGCAGTTGAGTAATTGG+TGG | - | chr8.1:49758944-49758963 | None:intergenic | 35.0% | |
ACTCAACTGCAATTGATATC+TGG | + | chr8.1:49758950-49758969 | MS.gene070613:CDS | 35.0% | |
GCAATTGATATCTGGTCTAT+GGG | + | chr8.1:49758958-49758977 | MS.gene070613:CDS | 35.0% | |
TAATGATGAACCGCAGATAT+TGG | + | chr8.1:49759026-49759045 | MS.gene070613:CDS | 35.0% | |
TCATCATTACCAATGAACAG+AGG | - | chr8.1:49759015-49759034 | None:intergenic | 35.0% | |
TGCAATTGATATCTGGTCTA+TGG | + | chr8.1:49758957-49758976 | MS.gene070613:CDS | 35.0% | |
! | GCATATTTGCTGAGATTCTT+AGG | + | chr8.1:49758983-49759002 | MS.gene070613:CDS | 35.0% |
!! | AAAGCACCTGAACTTTTGAT+GGG | + | chr8.1:49758916-49758935 | MS.gene070613:CDS | 35.0% |
!! | AGATATTGGCTGCGATATTT+TGG | + | chr8.1:49759040-49759059 | MS.gene070613:CDS | 35.0% |
!! | TAAAGCACCTGAACTTTTGA+TGG | + | chr8.1:49758915-49758934 | MS.gene070613:CDS | 35.0% |
AATACAGGCGCTTGATCAAT+TGG | - | chr8.1:49759241-49759260 | None:intergenic | 40.0% | |
AATATCGCAGCCAATATCTG+CGG | - | chr8.1:49759039-49759058 | None:intergenic | 40.0% | |
AGTTCAGGTGCTTTATAGCA+CGG | - | chr8.1:49758910-49758929 | None:intergenic | 40.0% | |
GTGGAACCCATCAAAAGTTC+AGG | - | chr8.1:49758925-49758944 | None:intergenic | 45.0% | |
TTGCATGTAGAAGACACACC+AGG | - | chr8.1:49759191-49759210 | None:intergenic | 45.0% | |
ACAGGCGCTTGATCAATTGG+AGG | - | chr8.1:49759238-49759257 | None:intergenic | 50.0% | |
AGGCTCGAACCTCTGTTCAT+TGG | + | chr8.1:49759003-49759022 | MS.gene070613:CDS | 50.0% | |
CAGGCGCTTGATCAATTGGA+GGG | - | chr8.1:49759237-49759256 | None:intergenic | 50.0% | |
GTACGCCAACTGAAGAAACC+TGG | + | chr8.1:49759165-49759184 | MS.gene070613:intron | 50.0% | |
CCAACTGAAGAAACCTGGCC+TGG | + | chr8.1:49759170-49759189 | MS.gene070613:intron | 55.0% | |
CCAGGCCAGGTTTCTTCAGT+TGG | - | chr8.1:49759173-49759192 | None:intergenic | 55.0% | |
TGTAGAAGACACACCAGGCC+AGG | - | chr8.1:49759186-49759205 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 49758898 | 49759270 | 49758898 | ID=MS.gene070613 |
chr8.1 | mRNA | 49758898 | 49759270 | 49758898 | ID=MS.gene070613.t1;Parent=MS.gene070613 |
chr8.1 | exon | 49758898 | 49759061 | 49758898 | ID=MS.gene070613.t1.exon1;Parent=MS.gene070613.t1 |
chr8.1 | CDS | 49758898 | 49759061 | 49758898 | ID=cds.MS.gene070613.t1;Parent=MS.gene070613.t1 |
chr8.1 | exon | 49759222 | 49759270 | 49759222 | ID=MS.gene070613.t1.exon2;Parent=MS.gene070613.t1 |
chr8.1 | CDS | 49759222 | 49759270 | 49759222 | ID=cds.MS.gene070613.t1;Parent=MS.gene070613.t1 |
Gene Sequence |
Protein sequence |