Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07062.t1 | XP_003625975.2 | 54.5 | 561 | 30 | 5 | 1 | 341 | 1 | 556 | 9.50E-140 | 506.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07062.t1 | Q5BN22 | 32.8 | 122 | 80 | 1 | 218 | 339 | 455 | 574 | 4.9e-12 | 73.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07062.t1 | G7KSU2 | 54.5 | 561 | 30 | 5 | 1 | 341 | 1 | 556 | 6.8e-140 | 506.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene07062.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07062.t1 | MTR_7g109580 | 82.609 | 207 | 25 | 4 | 1 | 202 | 1 | 201 | 1.62e-110 | 333 |
| MS.gene07062.t1 | MTR_7g109580 | 79.874 | 159 | 23 | 2 | 192 | 341 | 398 | 556 | 4.33e-85 | 267 |
| MS.gene07062.t1 | MTR_1g086970 | 73.387 | 124 | 33 | 0 | 218 | 341 | 357 | 480 | 3.66e-62 | 206 |
| MS.gene07062.t1 | MTR_1g086970 | 46.903 | 113 | 47 | 5 | 89 | 196 | 9 | 113 | 1.61e-15 | 77.8 |
| MS.gene07062.t1 | MTR_2g034250 | 59.055 | 127 | 51 | 1 | 216 | 341 | 461 | 587 | 1.09e-44 | 161 |
| MS.gene07062.t1 | MTR_2g034260 | 59.843 | 127 | 49 | 2 | 216 | 341 | 461 | 586 | 1.04e-43 | 159 |
| MS.gene07062.t1 | MTR_2g034260 | 30.380 | 158 | 99 | 3 | 41 | 196 | 69 | 217 | 7.81e-11 | 63.5 |
| MS.gene07062.t1 | MTR_2g034280 | 57.480 | 127 | 52 | 2 | 216 | 341 | 452 | 577 | 2.66e-42 | 154 |
| MS.gene07062.t1 | MTR_8g442410 | 38.095 | 126 | 68 | 5 | 218 | 339 | 406 | 525 | 4.80e-16 | 79.3 |
| MS.gene07062.t1 | MTR_7g027190 | 34.146 | 123 | 79 | 2 | 218 | 339 | 552 | 673 | 3.54e-14 | 73.9 |
| MS.gene07062.t1 | MTR_7g074650 | 35.172 | 145 | 87 | 4 | 200 | 339 | 650 | 792 | 9.32e-14 | 72.8 |
| MS.gene07062.t1 | MTR_4g104020 | 34.646 | 127 | 72 | 4 | 218 | 339 | 400 | 520 | 1.88e-13 | 71.6 |
| MS.gene07062.t1 | MTR_7g062120 | 34.146 | 123 | 79 | 2 | 218 | 339 | 619 | 740 | 7.88e-13 | 69.7 |
| MS.gene07062.t1 | MTR_1g069725 | 33.333 | 129 | 83 | 3 | 212 | 338 | 335 | 462 | 1.42e-12 | 68.6 |
| MS.gene07062.t1 | MTR_2g097463 | 33.607 | 122 | 79 | 2 | 218 | 338 | 534 | 654 | 1.86e-12 | 68.6 |
| MS.gene07062.t1 | MTR_4g076020 | 38.095 | 126 | 71 | 5 | 217 | 339 | 308 | 429 | 1.92e-12 | 68.2 |
| MS.gene07062.t1 | MTR_4g064200 | 35.484 | 124 | 75 | 4 | 218 | 338 | 528 | 649 | 7.31e-12 | 66.6 |
| MS.gene07062.t1 | MTR_2g097410 | 37.097 | 124 | 72 | 4 | 218 | 338 | 620 | 740 | 2.88e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07062.t1 | AT1G14920 | 31.707 | 123 | 82 | 1 | 218 | 340 | 410 | 530 | 4.04e-15 | 76.6 |
| MS.gene07062.t1 | AT2G01570 | 30.894 | 123 | 83 | 1 | 218 | 340 | 462 | 582 | 4.25e-15 | 76.6 |
| MS.gene07062.t1 | AT1G66350 | 32.520 | 123 | 80 | 1 | 218 | 340 | 388 | 507 | 1.16e-14 | 75.1 |
| MS.gene07062.t1 | AT3G03450 | 31.707 | 123 | 84 | 0 | 218 | 340 | 424 | 546 | 2.02e-14 | 74.7 |
| MS.gene07062.t1 | AT3G46600 | 32.520 | 123 | 81 | 2 | 218 | 339 | 426 | 547 | 1.44e-13 | 72.0 |
| MS.gene07062.t1 | AT3G46600 | 32.520 | 123 | 81 | 2 | 218 | 339 | 458 | 579 | 1.58e-13 | 72.0 |
| MS.gene07062.t1 | AT1G07530 | 38.710 | 124 | 70 | 3 | 218 | 338 | 644 | 764 | 1.61e-13 | 72.0 |
| MS.gene07062.t1 | AT3G54220 | 34.722 | 144 | 87 | 4 | 200 | 338 | 508 | 649 | 2.55e-13 | 71.2 |
| MS.gene07062.t1 | AT3G46600 | 32.520 | 123 | 81 | 2 | 218 | 339 | 250 | 371 | 2.72e-13 | 70.5 |
| MS.gene07062.t1 | AT5G17490 | 30.894 | 123 | 85 | 0 | 218 | 340 | 395 | 517 | 1.03e-12 | 69.3 |
| MS.gene07062.t1 | AT2G37650 | 33.333 | 123 | 80 | 2 | 218 | 339 | 580 | 701 | 2.52e-12 | 68.2 |
| MS.gene07062.t1 | AT2G37650 | 33.333 | 123 | 80 | 2 | 218 | 339 | 592 | 713 | 2.57e-12 | 68.2 |
| MS.gene07062.t1 | AT2G29060 | 33.607 | 122 | 80 | 1 | 218 | 338 | 533 | 654 | 2.87e-11 | 65.1 |
| MS.gene07062.t1 | AT2G29060 | 33.607 | 122 | 80 | 1 | 218 | 338 | 570 | 691 | 2.94e-11 | 65.1 |
Find 52 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTAAAGCTTCTTCAAATT+TGG | 0.128771 | 7.2:-5778125 | MS.gene07062:CDS |
| CCTTATAGATTTGACCTTAA+TGG | 0.142996 | 7.2:-5777995 | MS.gene07062:CDS |
| GAATGGGAAGTGTTTGATAT+TGG | 0.247092 | 7.2:-5776898 | MS.gene07062:CDS |
| CTCAATATTCTTCTTCTCAT+TGG | 0.265071 | 7.2:-5778045 | MS.gene07062:CDS |
| CAGCTTGGAGGTTTCTTTGA+TGG | 0.281090 | 7.2:-5776845 | None:intergenic |
| GTTGTTGTTGATCATGATTT+TGG | 0.285842 | 7.2:+5778344 | None:intergenic |
| CCATTAAGGTCAAATCTATA+AGG | 0.308445 | 7.2:+5777995 | None:intergenic |
| CTTCCTCAGATAAACCATTA+AGG | 0.338720 | 7.2:+5777981 | None:intergenic |
| ATGATTTCTCAGAATCTCTA+AGG | 0.348847 | 7.2:+5778180 | None:intergenic |
| GGTAGTTGTTCATTCTCATT+TGG | 0.361963 | 7.2:+5778382 | None:intergenic |
| CAAATCTATAAGGGTGTGTT+TGG | 0.366485 | 7.2:+5778005 | None:intergenic |
| GAAATGTGAAAATTGATGTT+TGG | 0.381287 | 7.2:-5777037 | MS.gene07062:CDS |
| AATGGGAAGTGTTTGATATT+GGG | 0.407459 | 7.2:-5776897 | MS.gene07062:CDS |
| GAAGGAATAATAAGAGTAGC+TGG | 0.427571 | 7.2:-5778079 | MS.gene07062:CDS |
| TTTGCGATGTGGAAAAGAAT+GGG | 0.457035 | 7.2:-5776914 | MS.gene07062:CDS |
| GCAAGCACTTGCTGAGAGAC+AGG | 0.457628 | 7.2:-5777555 | MS.gene07062:CDS |
| TTAGAGATTCTGAGAAATCA+TGG | 0.458237 | 7.2:-5778178 | MS.gene07062:CDS |
| GTGTCTAAAGAGTTTGATCA+TGG | 0.459768 | 7.2:-5776942 | MS.gene07062:CDS |
| CATTAAGGTCAAATCTATAA+GGG | 0.469089 | 7.2:+5777996 | None:intergenic |
| GGTATAGAATGGTGGAAACT+AGG | 0.481546 | 7.2:-5776998 | MS.gene07062:CDS |
| ATTCTTTGCAAGGTATAGAA+TGG | 0.481831 | 7.2:-5777009 | MS.gene07062:CDS |
| ATGTGTTTACCAAGCTGAAT+TGG | 0.482893 | 7.2:-5776964 | MS.gene07062:CDS |
| TGAAGCGTTGTTCTTCTACT+CGG | 0.492367 | 7.2:-5777183 | MS.gene07062:CDS |
| ACAGAAGGAATATTATCTGC+AGG | 0.492833 | 7.2:-5777104 | MS.gene07062:CDS |
| TGTATTCAATCTCAGCTTGG+AGG | 0.499895 | 7.2:-5776857 | MS.gene07062:CDS |
| AGAAATATTGTCGCGTCAGA+AGG | 0.509809 | 7.2:-5777077 | MS.gene07062:CDS |
| CAACAACAAGAATTCGAAGT+TGG | 0.519349 | 7.2:-5778328 | MS.gene07062:CDS |
| TGTTCATTCTCATTTGGAAG+AGG | 0.520704 | 7.2:+5778388 | None:intergenic |
| CTTTAGACACCAATTCAGCT+TGG | 0.526186 | 7.2:+5776955 | None:intergenic |
| GTGTTTGATATTGGGATGGA+AGG | 0.529103 | 7.2:-5776889 | MS.gene07062:CDS |
| TGTTTGATATTGGGATGGAA+GGG | 0.535874 | 7.2:-5776888 | MS.gene07062:CDS |
| AGAACAACGCTTCAACGAAT+CGG | 0.538399 | 7.2:+5777192 | None:intergenic |
| TTTGGAGAAGATTCTTTGCA+AGG | 0.540946 | 7.2:-5777019 | MS.gene07062:CDS |
| TCTAAGGATGATAAATATTG+TGG | 0.555614 | 7.2:+5778196 | None:intergenic |
| GTTTGATATTGGGATGGAAG+GGG | 0.560675 | 7.2:-5776887 | MS.gene07062:CDS |
| CAATGTATTCAATCTCAGCT+TGG | 0.567255 | 7.2:-5776860 | MS.gene07062:CDS |
| CAAGCTGAGATTGAATACAT+TGG | 0.568796 | 7.2:+5776861 | None:intergenic |
| GGAAGTGTTTGATATTGGGA+TGG | 0.581535 | 7.2:-5776893 | MS.gene07062:CDS |
| TTCTTCTACAAAGTCATGAG+TGG | 0.586107 | 7.2:+5778474 | None:intergenic |
| TCGCGTCAGAAGGTAGAGAA+AGG | 0.588622 | 7.2:-5777067 | MS.gene07062:CDS |
| CATCAAAAGATGTCAACAGA+AGG | 0.596462 | 7.2:-5778097 | MS.gene07062:CDS |
| CAGAAGGAATATTATCTGCA+GGG | 0.601009 | 7.2:-5777103 | MS.gene07062:CDS |
| TGCTGAGAGACAGGATTGCA+TGG | 0.602620 | 7.2:-5777546 | MS.gene07062:CDS |
| CTTTGCAAGGTATAGAATGG+TGG | 0.606333 | 7.2:-5777006 | MS.gene07062:CDS |
| TGACCTTAATGGTTTATCTG+AGG | 0.606438 | 7.2:-5777984 | MS.gene07062:CDS |
| GAGTGTAGGATGATAACAGA+AGG | 0.608979 | 7.2:-5777119 | MS.gene07062:CDS |
| TAATAAGAGTAGCTGGAGCA+AGG | 0.609556 | 7.2:-5778072 | MS.gene07062:CDS |
| TGAGCGAGGAGGATGAGTGT+AGG | 0.628200 | 7.2:-5777133 | MS.gene07062:CDS |
| TGTCTAAAGAGTTTGATCAT+GGG | 0.633104 | 7.2:-5776941 | MS.gene07062:CDS |
| GGCTGAAACATGTATGAGCG+AGG | 0.648686 | 7.2:-5777147 | MS.gene07062:CDS |
| GGTGGAAACTAGGTTTAGTG+AGG | 0.671023 | 7.2:-5776988 | MS.gene07062:CDS |
| TGAAACATGTATGAGCGAGG+AGG | 0.773647 | 7.2:-5777144 | MS.gene07062:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAGGTTTATATAAAAA+GGG | + | chr7.2:5777925-5777944 | None:intergenic | 15.0% |
| !! | TAAAACAGGTTTATATAAAA+AGG | + | chr7.2:5777926-5777945 | None:intergenic | 15.0% |
| !!! | AATTACTTTTATATTGTCAA+TGG | - | chr7.2:5777467-5777486 | MS.gene07062:intron | 15.0% |
| !!! | AGATGATTTTGAAATTAAAA+AGG | - | chr7.2:5777972-5777991 | MS.gene07062:CDS | 15.0% |
| !! | AATTGCATAACTTGATTAAA+AGG | + | chr7.2:5777670-5777689 | None:intergenic | 20.0% |
| !! | ATTAAAGTCCTTAGAAAATA+TGG | + | chr7.2:5778021-5778040 | None:intergenic | 20.0% |
| !! | TAGAAAATATGGAGAATAAA+CGG | + | chr7.2:5778010-5778029 | None:intergenic | 20.0% |
| !!! | AAAAACTATGTTGTTTATCT+TGG | + | chr7.2:5776904-5776923 | None:intergenic | 20.0% |
| !!! | ATAGATTTTGATATAAGAAG+TGG | - | chr7.2:5777745-5777764 | MS.gene07062:intron | 20.0% |
| !!! | ATATTGTTTTCTAAAGGTTT+TGG | + | chr7.2:5777118-5777137 | None:intergenic | 20.0% |
| !!! | TAGATTTTGATATAAGAAGT+GGG | - | chr7.2:5777746-5777765 | MS.gene07062:intron | 20.0% |
| !!! | TATTTTGTTGATTAGTTTCT+AGG | + | chr7.2:5777072-5777091 | None:intergenic | 20.0% |
| !!! | TTCTGAATATTGTTTTCTAA+AGG | + | chr7.2:5777124-5777143 | None:intergenic | 20.0% |
| !!! | TTTATTCTCCATATTTTCTA+AGG | - | chr7.2:5778010-5778029 | MS.gene07062:CDS | 20.0% |
| ! | AACATATCTTCTACTAAAAC+AGG | + | chr7.2:5777940-5777959 | None:intergenic | 25.0% |
| ! | AAGAACAAAATTGAAGAAAC+TGG | - | chr7.2:5777862-5777881 | MS.gene07062:intron | 25.0% |
| ! | AATCAAGTTATGCAATTTAC+TGG | - | chr7.2:5777673-5777692 | MS.gene07062:intron | 25.0% |
| ! | CATTAAGGTCAAATCTATAA+GGG | + | chr7.2:5777351-5777370 | None:intergenic | 25.0% |
| ! | GAAATGTGAAAATTGATGTT+TGG | - | chr7.2:5778307-5778326 | MS.gene07062:CDS | 25.0% |
| ! | TACTAAAGCTTCTTCAAATT+TGG | - | chr7.2:5777219-5777238 | MS.gene07062:intron | 25.0% |
| ! | TATCAAACCATGTATAATGA+TGG | - | chr7.2:5778086-5778105 | MS.gene07062:CDS | 25.0% |
| ! | TCTAAGGATGATAAATATTG+TGG | + | chr7.2:5777151-5777170 | None:intergenic | 25.0% |
| !! | GATAAACAACATAGTTTTTC+TGG | - | chr7.2:5776905-5776924 | MS.gene07062:CDS | 25.0% |
| !! | TTCTAAGGACTTTAATATCA+AGG | - | chr7.2:5778025-5778044 | MS.gene07062:CDS | 25.0% |
| !! | TTGCATGGTTGAAATTTTTA+AGG | - | chr7.2:5777813-5777832 | MS.gene07062:intron | 25.0% |
| !!! | AGATTTTGATATAAGAAGTG+GGG | - | chr7.2:5777747-5777766 | MS.gene07062:intron | 25.0% |
| !!! | ATTTTTAAGGTAAGTGCTAT+TGG | - | chr7.2:5777826-5777845 | MS.gene07062:intron | 25.0% |
| !!! | TGTTTTAGTAGAAGATATGT+TGG | - | chr7.2:5777939-5777958 | MS.gene07062:CDS | 25.0% |
| !!! | TTTTCTAAAGGTTTTGGAAT+TGG | + | chr7.2:5777112-5777131 | None:intergenic | 25.0% |
| !!! | TTTTTCTGGAATACAATTGT+TGG | - | chr7.2:5776919-5776938 | MS.gene07062:CDS | 25.0% |
| AAACAGGAAGAGTGATTAAA+GGG | - | chr7.2:5777569-5777588 | MS.gene07062:CDS | 30.0% | |
| AATATCAAGGCAGAATTCTA+TGG | - | chr7.2:5778038-5778057 | MS.gene07062:CDS | 30.0% | |
| ATGATTTCTCAGAATCTCTA+AGG | + | chr7.2:5777167-5777186 | None:intergenic | 30.0% | |
| ATTCTTTGCAAGGTATAGAA+TGG | - | chr7.2:5778335-5778354 | MS.gene07062:CDS | 30.0% | |
| CCATTAAGGTCAAATCTATA+AGG | + | chr7.2:5777352-5777371 | None:intergenic | 30.0% | |
| CCTTATAGATTTGACCTTAA+TGG | - | chr7.2:5777349-5777368 | MS.gene07062:intron | 30.0% | |
| CTCAATATTCTTCTTCTCAT+TGG | - | chr7.2:5777299-5777318 | MS.gene07062:intron | 30.0% | |
| TCAAGTACCATCATTATACA+TGG | + | chr7.2:5778096-5778115 | None:intergenic | 30.0% | |
| TGTCTAAAGAGTTTGATCAT+GGG | - | chr7.2:5778403-5778422 | MS.gene07062:CDS | 30.0% | |
| ! | TTAGAGATTCTGAGAAATCA+TGG | - | chr7.2:5777166-5777185 | MS.gene07062:CDS | 30.0% |
| !! | AATGGGAAGTGTTTGATATT+GGG | - | chr7.2:5778447-5778466 | MS.gene07062:CDS | 30.0% |
| !! | GTTGTTGTTGATCATGATTT+TGG | + | chr7.2:5777003-5777022 | None:intergenic | 30.0% |
| !! | TTTTGGTTGTTGAACATGTT+GGG | + | chr7.2:5776986-5777005 | None:intergenic | 30.0% |
| !!! | ATTTTGGTTGTTGAACATGT+TGG | + | chr7.2:5776987-5777006 | None:intergenic | 30.0% |
| AAGTGAGTTACTTGACAAGA+TGG | - | chr7.2:5777609-5777628 | MS.gene07062:intron | 35.0% | |
| ACAGAAGGAATATTATCTGC+AGG | - | chr7.2:5778240-5778259 | MS.gene07062:CDS | 35.0% | |
| AGTCATGAGTGGAAGAAAAA+TGG | + | chr7.2:5776862-5776881 | None:intergenic | 35.0% | |
| AGTGAGTTACTTGACAAGAT+GGG | - | chr7.2:5777610-5777629 | MS.gene07062:intron | 35.0% | |
| ATGTGTTTACCAAGCTGAAT+TGG | - | chr7.2:5778380-5778399 | MS.gene07062:CDS | 35.0% | |
| CAACAACAAGAATTCGAAGT+TGG | - | chr7.2:5777016-5777035 | MS.gene07062:CDS | 35.0% | |
| CAAGCTGAGATTGAATACAT+TGG | + | chr7.2:5778486-5778505 | None:intergenic | 35.0% | |
| CAATGTATTCAATCTCAGCT+TGG | - | chr7.2:5778484-5778503 | MS.gene07062:CDS | 35.0% | |
| CAGAAGGAATATTATCTGCA+GGG | - | chr7.2:5778241-5778260 | MS.gene07062:CDS | 35.0% | |
| CATCAAAAGATGTCAACAGA+AGG | - | chr7.2:5777247-5777266 | MS.gene07062:intron | 35.0% | |
| CTTCCTCAGATAAACCATTA+AGG | + | chr7.2:5777366-5777385 | None:intergenic | 35.0% | |
| GAAACAGGAAGAGTGATTAA+AGG | - | chr7.2:5777568-5777587 | MS.gene07062:CDS | 35.0% | |
| GAAGGAATAATAAGAGTAGC+TGG | - | chr7.2:5777265-5777284 | MS.gene07062:intron | 35.0% | |
| GAGAGAATAGAGAAAGAAAC+AGG | - | chr7.2:5777553-5777572 | MS.gene07062:CDS | 35.0% | |
| GGTAGTTGTTCATTCTCATT+TGG | + | chr7.2:5776965-5776984 | None:intergenic | 35.0% | |
| GTGTCTAAAGAGTTTGATCA+TGG | - | chr7.2:5778402-5778421 | MS.gene07062:CDS | 35.0% | |
| TGACCTTAATGGTTTATCTG+AGG | - | chr7.2:5777360-5777379 | MS.gene07062:intron | 35.0% | |
| TGTTCATTCTCATTTGGAAG+AGG | + | chr7.2:5776959-5776978 | None:intergenic | 35.0% | |
| TGTTTGATATTGGGATGGAA+GGG | - | chr7.2:5778456-5778475 | MS.gene07062:CDS | 35.0% | |
| TTCTTCTACAAAGTCATGAG+TGG | + | chr7.2:5776873-5776892 | None:intergenic | 35.0% | |
| TTGAACACAATTTCCTGTGA+TGG | + | chr7.2:5777500-5777519 | None:intergenic | 35.0% | |
| TTTGCGATGTGGAAAAGAAT+GGG | - | chr7.2:5778430-5778449 | MS.gene07062:CDS | 35.0% | |
| TTTGGAGAAGATTCTTTGCA+AGG | - | chr7.2:5778325-5778344 | MS.gene07062:CDS | 35.0% | |
| ! | CAAATCTATAAGGGTGTGTT+TGG | + | chr7.2:5777342-5777361 | None:intergenic | 35.0% |
| ! | TTTTGCGATGTGGAAAAGAA+TGG | - | chr7.2:5778429-5778448 | MS.gene07062:CDS | 35.0% |
| !! | GAATGGGAAGTGTTTGATAT+TGG | - | chr7.2:5778446-5778465 | MS.gene07062:CDS | 35.0% |
| !!! | GTTTTGGAATTGGAACTTTG+TGG | + | chr7.2:5777102-5777121 | None:intergenic | 35.0% |
| AGAAATATTGTCGCGTCAGA+AGG | - | chr7.2:5778267-5778286 | MS.gene07062:CDS | 40.0% | |
| AGAACAACGCTTCAACGAAT+CGG | + | chr7.2:5778155-5778174 | None:intergenic | 40.0% | |
| CAATGGAATTCTTCCATCAC+AGG | - | chr7.2:5777484-5777503 | MS.gene07062:intron | 40.0% | |
| CTTTAGACACCAATTCAGCT+TGG | + | chr7.2:5778392-5778411 | None:intergenic | 40.0% | |
| CTTTGCAAGGTATAGAATGG+TGG | - | chr7.2:5778338-5778357 | MS.gene07062:CDS | 40.0% | |
| GAGTGTAGGATGATAACAGA+AGG | - | chr7.2:5778225-5778244 | MS.gene07062:CDS | 40.0% | |
| GTGTTTGATATTGGGATGGA+AGG | - | chr7.2:5778455-5778474 | MS.gene07062:CDS | 40.0% | |
| GTTTGATATTGGGATGGAAG+GGG | - | chr7.2:5778457-5778476 | MS.gene07062:CDS | 40.0% | |
| TAATAAGAGTAGCTGGAGCA+AGG | - | chr7.2:5777272-5777291 | MS.gene07062:intron | 40.0% | |
| TGTATTCAATCTCAGCTTGG+AGG | - | chr7.2:5778487-5778506 | MS.gene07062:CDS | 40.0% | |
| ! | GGTATAGAATGGTGGAAACT+AGG | - | chr7.2:5778346-5778365 | MS.gene07062:CDS | 40.0% |
| ! | TCATGGGAAATTTTGCGATG+TGG | - | chr7.2:5778419-5778438 | MS.gene07062:CDS | 40.0% |
| !! | GGAAGTGTTTGATATTGGGA+TGG | - | chr7.2:5778451-5778470 | MS.gene07062:CDS | 40.0% |
| !! | TGAAGCGTTGTTCTTCTACT+CGG | - | chr7.2:5778161-5778180 | MS.gene07062:CDS | 40.0% |
| !!! | CTACTCGGCTTTTTTCGATA+TGG | - | chr7.2:5778176-5778195 | MS.gene07062:CDS | 40.0% |
| CTTGCATCAAAGCTATGCAC+TGG | + | chr7.2:5777774-5777793 | None:intergenic | 45.0% | |
| GGTGGAAACTAGGTTTAGTG+AGG | - | chr7.2:5778356-5778375 | MS.gene07062:CDS | 45.0% | |
| TGAAACATGTATGAGCGAGG+AGG | - | chr7.2:5778200-5778219 | MS.gene07062:CDS | 45.0% | |
| GGCTGAAACATGTATGAGCG+AGG | - | chr7.2:5778197-5778216 | MS.gene07062:CDS | 50.0% | |
| TCGCGTCAGAAGGTAGAGAA+AGG | - | chr7.2:5778277-5778296 | MS.gene07062:CDS | 50.0% | |
| TGCTGAGAGACAGGATTGCA+TGG | - | chr7.2:5777798-5777817 | MS.gene07062:intron | 50.0% | |
| TGAGCGAGGAGGATGAGTGT+AGG | - | chr7.2:5778211-5778230 | MS.gene07062:CDS | 55.0% | |
| ! | GCAAGCACTTGCTGAGAGAC+AGG | - | chr7.2:5777789-5777808 | MS.gene07062:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 5776848 | 5778518 | 5776848 | ID=MS.gene07062 |
| chr7.2 | mRNA | 5776848 | 5778518 | 5776848 | ID=MS.gene07062.t1;Parent=MS.gene07062 |
| chr7.2 | exon | 5777931 | 5778518 | 5777931 | ID=MS.gene07062.t1.exon1;Parent=MS.gene07062.t1 |
| chr7.2 | CDS | 5777931 | 5778518 | 5777931 | ID=cds.MS.gene07062.t1;Parent=MS.gene07062.t1 |
| chr7.2 | exon | 5777532 | 5777591 | 5777532 | ID=MS.gene07062.t1.exon2;Parent=MS.gene07062.t1 |
| chr7.2 | CDS | 5777532 | 5777591 | 5777532 | ID=cds.MS.gene07062.t1;Parent=MS.gene07062.t1 |
| chr7.2 | exon | 5776848 | 5777225 | 5776848 | ID=MS.gene07062.t1.exon3;Parent=MS.gene07062.t1 |
| chr7.2 | CDS | 5776848 | 5777225 | 5776848 | ID=cds.MS.gene07062.t1;Parent=MS.gene07062.t1 |
| Gene Sequence |
| Protein sequence |
