AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070703

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070703.t1 MTR_1g032600 90.991 333 19 5 1 328 29 355 0.0 592
MS.gene070703.t1 MTR_4g075480 55.344 262 98 7 32 284 13 264 3.10e-80 246
MS.gene070703.t1 MTR_4g075480 57.676 241 85 5 51 284 6 236 3.37e-79 243
MS.gene070703.t1 MTR_4g108360 43.137 102 58 0 50 151 49 150 3.22e-22 94.0
MS.gene070703.t1 MTR_4g081370 44.681 94 51 1 56 148 37 130 6.30e-20 86.3
MS.gene070703.t1 MTR_4g081370 37.838 148 80 4 5 148 35 174 1.60e-19 86.3
MS.gene070703.t1 MTR_2g082640 44.000 100 51 2 56 154 74 169 1.98e-19 85.9
MS.gene070703.t1 MTR_2g089000 44.565 92 50 1 56 146 110 201 1.31e-17 81.6
MS.gene070703.t1 MTR_1g043430 37.423 163 76 6 56 217 95 232 1.48e-17 81.3
MS.gene070703.t1 MTR_4g108360 44.595 74 41 0 78 151 24 97 2.31e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070703.t1 AT3G19860 51.230 244 110 4 49 290 3 239 6.25e-74 229
MS.gene070703.t1 AT3G19860 50.598 251 115 4 42 290 27 270 2.57e-73 229
MS.gene070703.t1 AT3G19860 50.598 251 115 4 42 290 49 292 6.27e-73 229
MS.gene070703.t1 AT4G36060 40.486 247 95 8 55 289 30 236 6.64e-48 162
MS.gene070703.t1 AT4G36060 40.486 247 95 8 55 289 48 254 2.56e-47 161
MS.gene070703.t1 AT4G36060 40.506 237 90 7 55 280 30 226 8.58e-46 157
MS.gene070703.t1 AT4G36060 40.506 237 90 7 55 280 48 244 3.07e-45 156
MS.gene070703.t1 AT5G54680 43.000 100 52 2 56 154 76 171 7.23e-19 84.7
MS.gene070703.t1 AT3G23210 38.686 137 73 5 56 181 138 274 6.82e-18 82.8
MS.gene070703.t1 AT3G23210 38.686 137 73 5 56 181 167 303 1.27e-17 82.4
MS.gene070703.t1 AT1G51070 45.745 94 50 1 56 148 71 164 5.91e-17 79.0
MS.gene070703.t1 AT1G51070 45.745 94 50 1 56 148 137 230 1.29e-16 79.3
MS.gene070703.t1 AT3G47640 33.645 107 71 0 50 156 26 132 2.90e-16 77.4
MS.gene070703.t1 AT3G47640 33.645 107 71 0 50 156 26 132 2.90e-16 77.4
MS.gene070703.t1 AT3G47640 33.645 107 71 0 50 156 26 132 2.90e-16 77.4
MS.gene070703.t1 AT4G14410 33.793 145 72 4 56 198 129 251 3.00e-14 72.4
MS.gene070703.t1 AT4G14410 33.793 145 72 4 56 198 129 251 3.00e-14 72.4
MS.gene070703.t1 AT4G14410 33.793 145 72 4 56 198 135 257 3.49e-14 72.0

Find 82 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATATGACCAGGATTT+TGG 0.212723 1.2:-17083361 None:intergenic
CATCAATTGGGAAACGTAAT+AGG 0.223751 1.2:+17082394 MS.gene070703:CDS
ATAGGAACGGGGTACGTATA+AGG 0.292057 1.2:-17083269 None:intergenic
TTAAAGACGCTTTCTCTTCT+CGG 0.308272 1.2:-17083151 None:intergenic
GTGTTTAGCGGCGGAGGCGG+TGG 0.314738 1.2:-17082116 None:intergenic
TTGTCATTCCGTGGTCTATC+AGG 0.332142 1.2:-17082919 None:intergenic
CTCAATGTATATTCCATTCT+CGG 0.354937 1.2:+17083391 MS.gene070703:CDS
TCAAGCTCTGTTGCCACATC+TGG 0.367803 1.2:-17083551 None:intergenic
TGAGCTGATGGCATCTCTAT+TGG 0.379396 1.2:-17083428 None:intergenic
AGGCTGACCGTGAGAAAATC+AGG 0.380020 1.2:+17082347 MS.gene070703:CDS
GAGCCAGTATTCTGCATCTC+AGG 0.388043 1.2:+17083766 MS.gene070703:CDS
AAAGTCAATTAACTAGCCTT+TGG 0.391631 1.2:-17083824 None:intergenic
ATCTCTATTGGAGGGATAGC+TGG 0.399284 1.2:-17083416 None:intergenic
ATTGGCATTGGCATAGGAAC+GGG 0.403675 1.2:-17083281 None:intergenic
GTCCCTGAGATGCAGAATAC+TGG 0.415172 1.2:-17083769 None:intergenic
TGTTTAGCGGCGGAGGCGGT+GGG 0.428409 1.2:-17082115 None:intergenic
TTGAATTGTCTCTGTGATGA+TGG 0.441426 1.2:-17082947 None:intergenic
TAGGAACGGGGTACGTATAA+GGG 0.451220 1.2:-17083268 None:intergenic
TGGAGTGTTGCTGACGCTGT+TGG 0.452978 1.2:-17083804 None:intergenic
TTCGAGGTGTTTAGCGGCGG+AGG 0.460101 1.2:-17082122 None:intergenic
AATGCCAATCCCTCGTGGTC+CGG 0.465689 1.2:+17083295 MS.gene070703:CDS
TGGTTTCCATAGTAAGGAAA+AGG 0.470758 1.2:-17083341 None:intergenic
GAGCTTGAGCTTAAGATGCC+TGG 0.473388 1.2:+17083566 MS.gene070703:CDS
GCCTGGATCATCAACACAAC+AGG 0.473485 1.2:+17083583 MS.gene070703:CDS
GTGTAGAGAGAGGAGTGAGA+TGG 0.473670 1.2:+17082291 MS.gene070703:intron
GCATGGCTCTGACTCTCTGC+TGG 0.479835 1.2:-17083205 None:intergenic
GTGATTCTTCTGCCGCAGTA+AGG 0.481448 1.2:-17082154 None:intergenic
AGGTTGCATAGGTGGGTGAA+TGG 0.481673 1.2:-17083321 None:intergenic
AATATCTTTACGATTGGTGA+TGG 0.482957 1.2:-17082186 None:intergenic
GAGGTGTTTAGCGGCGGAGG+CGG 0.484202 1.2:-17082119 None:intergenic
CTAAACACGTGGGATGTAGA+AGG 0.488709 1.2:-17083455 None:intergenic
CCTGACAATATCTTTACGAT+TGG 0.490047 1.2:-17082192 None:intergenic
GGGATAGCTGGAGCCGAGAA+TGG 0.495557 1.2:-17083404 None:intergenic
TTACGATTGGTGATGGGCAG+CGG 0.497262 1.2:-17082179 None:intergenic
TACTATGGAAACCAAAATCC+TGG 0.503568 1.2:+17083350 MS.gene070703:CDS
TAAGGAAAAGGTTGCATAGG+TGG 0.507917 1.2:-17083329 None:intergenic
GAAACCGGACCACGAGGGAT+TGG 0.509088 1.2:-17083299 None:intergenic
AGAGACAATTCAAGTGCTAA+AGG 0.518046 1.2:+17082957 MS.gene070703:CDS
TTTCTAGCAACAACAACACT+TGG 0.522874 1.2:-17082316 None:intergenic
CCAATCGTAAAGATATTGTC+AGG 0.525025 1.2:+17082192 MS.gene070703:CDS
TGCAACACATGATCAATCAA+TGG 0.526037 1.2:+17082090 None:intergenic
AATTGCAGTCCATGGTGGCA+TGG 0.531488 1.2:-17083222 None:intergenic
GCTGATGGCATCTCTATTGG+AGG 0.536435 1.2:-17083425 None:intergenic
CTATAGGATTGCACATCTAG+AGG 0.536684 1.2:+17083686 MS.gene070703:intron
CTACATCTTTCTGCATCACT+AGG 0.537613 1.2:-17083521 None:intergenic
CGAGGGATTGGCATTGGCAT+AGG 0.543640 1.2:-17083287 None:intergenic
ACCTGTTGTGTTGATGATCC+AGG 0.545050 1.2:-17083584 None:intergenic
GAATGGTCAATTGCAGTCCA+TGG 0.547989 1.2:-17083230 None:intergenic
ATAGGTGGGTGAATGGAAAC+CGG 0.548801 1.2:-17083314 None:intergenic
GGACCACGAGGGATTGGCAT+TGG 0.552123 1.2:-17083293 None:intergenic
CTAGGTCTTCTTCTATGACC+TGG 0.556746 1.2:-17083503 None:intergenic
TAGTAAGGAAAAGGTTGCAT+AGG 0.564004 1.2:-17083332 None:intergenic
TGATTCTTCTGCCGCAGTAA+GGG 0.566675 1.2:-17082153 None:intergenic
AAGGAAAAGGTTGCATAGGT+GGG 0.567952 1.2:-17083328 None:intergenic
GATTGGCATTGGCATAGGAA+CGG 0.568920 1.2:-17083282 None:intergenic
GTAGAAGGATACTGAGCTGA+TGG 0.572163 1.2:-17083440 None:intergenic
ATATCTTTACGATTGGTGAT+GGG 0.578157 1.2:-17082185 None:intergenic
TGTTGCTAGAAAAGTTCAGA+AGG 0.582816 1.2:+17082327 MS.gene070703:CDS
AGCCAGTATTCTGCATCTCA+GGG 0.590410 1.2:+17083767 MS.gene070703:CDS
ATATACATTGAGGATAGACT+TGG 0.594802 1.2:-17083380 None:intergenic
TCTTCTGCCGCAGTAAGGGA+TGG 0.602962 1.2:-17082149 None:intergenic
GAGTCTCGAAGCAAGTCACC+AGG 0.602988 1.2:+17083485 MS.gene070703:CDS
AGAGCATAAATCACTTTCTG+AGG 0.607090 1.2:+17083011 MS.gene070703:CDS
CGAGAATGGAATATACATTG+AGG 0.609687 1.2:-17083390 None:intergenic
GATAGACTTGGAATATGACC+AGG 0.610908 1.2:-17083368 None:intergenic
CGATTGGTGATGGGCAGCGG+AGG 0.614010 1.2:-17082176 None:intergenic
ATGGTTGCCTTGTCATTCCG+TGG 0.623588 1.2:-17082928 None:intergenic
GGCTACTCATGACAACAGAA+TGG 0.634259 1.2:-17083247 None:intergenic
CTGATGGCATCTCTATTGGA+GGG 0.634505 1.2:-17083424 None:intergenic
CAGCGTCAGCAACACTCCAA+AGG 0.635368 1.2:+17083808 MS.gene070703:CDS
GAGTCAGAGCCATGCCACCA+TGG 0.644309 1.2:+17083213 MS.gene070703:CDS
TGATAGACCACGGAATGACA+AGG 0.652628 1.2:+17082921 MS.gene070703:CDS
TTGGCATTGGCATAGGAACG+GGG 0.655443 1.2:-17083280 None:intergenic
ATGTAGTGTGTCTCCAGATG+TGG 0.671060 1.2:+17083538 MS.gene070703:CDS
ATGCCAATGCCAATCCCTCG+TGG 0.682918 1.2:+17083290 MS.gene070703:CDS
TGAATGGAAACCGGACCACG+AGG 0.682967 1.2:-17083305 None:intergenic
ATGCAGATCCTGATAGACCA+CGG 0.688242 1.2:+17082911 MS.gene070703:intron
TGGTCAATTGCAGTCCATGG+TGG 0.700069 1.2:-17083227 None:intergenic
TGACCGTGAGAAAATCAGGA+GGG 0.711741 1.2:+17082351 MS.gene070703:CDS
CTGACCGTGAGAAAATCAGG+AGG 0.717963 1.2:+17082350 MS.gene070703:CDS
GAATGGAAACCGGACCACGA+GGG 0.722038 1.2:-17083304 None:intergenic
GAAAACACCATCCCTTACTG+CGG 0.761554 1.2:+17082142 MS.gene070703:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATGAAAAATAGTAATT+TGG + chr1.2:17082814-17082833 MS.gene070703:intron 10.0%
!! TGATAAAAAAAAAAAAAAAG+GGG - chr1.2:17082512-17082531 None:intergenic 10.0%
!! ATAAAAAAAAAAAAAAAGGG+GGG - chr1.2:17082510-17082529 None:intergenic 15.0%
!! ATCTAAATTCAAAAAAACTA+GGG + chr1.2:17082701-17082720 MS.gene070703:intron 15.0%
!! CTTAAAATAGTAATTTGAAA+TGG + chr1.2:17082847-17082866 MS.gene070703:intron 15.0%
!! GATAAAAAAAAAAAAAAAGG+GGG - chr1.2:17082511-17082530 None:intergenic 15.0%
!!! AGAATTAAGATTTTCTATAT+CGG - chr1.2:17083180-17083199 None:intergenic 15.0%
!!! ATTACTATTTTAAGTTCTTA+AGG - chr1.2:17082841-17082860 None:intergenic 15.0%
!! AATTGGTTACGATAAAAATA+TGG + chr1.2:17082773-17082792 MS.gene070703:intron 20.0%
!! GATCTAAATTCAAAAAAACT+AGG + chr1.2:17082700-17082719 MS.gene070703:intron 20.0%
!! TAAAAAAAAAAAAAAAGGGG+GGG - chr1.2:17082509-17082528 None:intergenic 20.0%
!! TCTAAATTCAAAAAAACTAG+GGG + chr1.2:17082702-17082721 MS.gene070703:intron 20.0%
!! TTTACAGTAAATACTCAAAT+TGG + chr1.2:17082756-17082775 MS.gene070703:intron 20.0%
!!! AAATGATCATTTTCATCAAT+TGG + chr1.2:17082381-17082400 MS.gene070703:CDS 20.0%
!!! AATGATCATTTTCATCAATT+GGG + chr1.2:17082382-17082401 MS.gene070703:CDS 20.0%
!!! GTAAGTTTTTTAATCTTGTT+TGG + chr1.2:17082416-17082435 MS.gene070703:intron 20.0%
! AAAAAAAAAAAAAAAGGGGG+GGG - chr1.2:17082508-17082527 None:intergenic 25.0%
! ATTAAGAAAACATTGCAGTA+AGG + chr1.2:17082547-17082566 MS.gene070703:intron 25.0%
!!! AAGCTTGTTTTGAAAGATTT+AGG + chr1.2:17082727-17082746 MS.gene070703:intron 25.0%
!!! AATGTATTTTCACACTGATT+TGG - chr1.2:17082647-17082666 None:intergenic 25.0%
!!! TGTTTTGAAAGATTTAGGTT+TGG + chr1.2:17082732-17082751 MS.gene070703:intron 25.0%
AAAAAAAAAAAAAAGGGGGG+GGG - chr1.2:17082507-17082526 None:intergenic 30.0%
AATATCTTTACGATTGGTGA+TGG - chr1.2:17082189-17082208 None:intergenic 30.0%
ACCTTCATTCTGATTTCTAT+AGG + chr1.2:17083670-17083689 MS.gene070703:intron 30.0%
AGGTATAAACGTTATTGTTG+TGG + chr1.2:17082212-17082231 MS.gene070703:intron 30.0%
ATATACATTGAGGATAGACT+TGG - chr1.2:17083383-17083402 None:intergenic 30.0%
CAGGATATGATATCTACAAT+TGG + chr1.2:17082589-17082608 MS.gene070703:intron 30.0%
CTCAATGTATATTCCATTCT+CGG + chr1.2:17083391-17083410 MS.gene070703:CDS 30.0%
GAACATGAATATCTCAACTA+CGG - chr1.2:17082881-17082900 None:intergenic 30.0%
TCCTATAGAAATCAGAATGA+AGG - chr1.2:17083674-17083693 None:intergenic 30.0%
! ATATCTTTACGATTGGTGAT+GGG - chr1.2:17082188-17082207 None:intergenic 30.0%
!! TTTTAGCACTGAAACAAGTT+TGG - chr1.2:17083643-17083662 None:intergenic 30.0%
AAAAAAAAAAAAAGGGGGGG+GGG - chr1.2:17082506-17082525 None:intergenic 35.0%
AACATTGCAGTAAGGAAAAC+AGG + chr1.2:17082555-17082574 MS.gene070703:intron 35.0%
AGAGACAATTCAAGTGCTAA+AGG + chr1.2:17082957-17082976 MS.gene070703:CDS 35.0%
AGAGCATAAATCACTTTCTG+AGG + chr1.2:17083011-17083030 MS.gene070703:CDS 35.0%
CATCAATTGGGAAACGTAAT+AGG + chr1.2:17082394-17082413 MS.gene070703:CDS 35.0%
CCAATCGTAAAGATATTGTC+AGG + chr1.2:17082192-17082211 MS.gene070703:CDS 35.0%
CCTGACAATATCTTTACGAT+TGG - chr1.2:17082195-17082214 None:intergenic 35.0%
CGAGAATGGAATATACATTG+AGG - chr1.2:17083393-17083412 None:intergenic 35.0%
TACTATGGAAACCAAAATCC+TGG + chr1.2:17083350-17083369 MS.gene070703:CDS 35.0%
TAGTAAGGAAAAGGTTGCAT+AGG - chr1.2:17083335-17083354 None:intergenic 35.0%
TGGTTTCCATAGTAAGGAAA+AGG - chr1.2:17083344-17083363 None:intergenic 35.0%
TGTTGCTAGAAAAGTTCAGA+AGG + chr1.2:17082327-17082346 MS.gene070703:CDS 35.0%
TTAAAGACGCTTTCTCTTCT+CGG - chr1.2:17083154-17083173 None:intergenic 35.0%
TTGAATTGTCTCTGTGATGA+TGG - chr1.2:17082950-17082969 None:intergenic 35.0%
TTGCACATCTAGAGGAAAAA+AGG + chr1.2:17083694-17083713 MS.gene070703:CDS 35.0%
! AGGAAAAAAGGCAAAGCATT+CGG + chr1.2:17083706-17083725 MS.gene070703:CDS 35.0%
! ATGCAACCTTTTCCTTACTA+TGG + chr1.2:17083335-17083354 MS.gene070703:CDS 35.0%
! TTGGAATATGACCAGGATTT+TGG - chr1.2:17083364-17083383 None:intergenic 35.0%
! TTTCTAGCAACAACAACACT+TGG - chr1.2:17082319-17082338 None:intergenic 35.0%
!!! GGATTTTGGTTTCCATAGTA+AGG - chr1.2:17083350-17083369 None:intergenic 35.0%
AAGGAAAAGGTTGCATAGGT+GGG - chr1.2:17083331-17083350 None:intergenic 40.0%
CTACATCTTTCTGCATCACT+AGG - chr1.2:17083524-17083543 None:intergenic 40.0%
CTATAGGATTGCACATCTAG+AGG + chr1.2:17083686-17083705 MS.gene070703:intron 40.0%
GATAGACTTGGAATATGACC+AGG - chr1.2:17083371-17083390 None:intergenic 40.0%
TAAGGAAAAGGTTGCATAGG+TGG - chr1.2:17083332-17083351 None:intergenic 40.0%
! ACTCTTTTCGACTAAACACG+TGG - chr1.2:17083469-17083488 None:intergenic 40.0%
! CTCTTTTCGACTAAACACGT+GGG - chr1.2:17083468-17083487 None:intergenic 40.0%
!! GTTGTTGTTTGTGTAGAGAG+AGG + chr1.2:17082281-17082300 MS.gene070703:intron 40.0%
AGCCAGTATTCTGCATCTCA+GGG + chr1.2:17083767-17083786 MS.gene070703:CDS 45.0%
ATAGGAACGGGGTACGTATA+AGG - chr1.2:17083272-17083291 None:intergenic 45.0%
ATAGGTGGGTGAATGGAAAC+CGG - chr1.2:17083317-17083336 None:intergenic 45.0%
ATCTCTATTGGAGGGATAGC+TGG - chr1.2:17083419-17083438 None:intergenic 45.0%
ATGCAGATCCTGATAGACCA+CGG + chr1.2:17082911-17082930 MS.gene070703:intron 45.0%
ATGTAGTGTGTCTCCAGATG+TGG + chr1.2:17083538-17083557 MS.gene070703:CDS 45.0%
CTAAACACGTGGGATGTAGA+AGG - chr1.2:17083458-17083477 None:intergenic 45.0%
CTAGGTCTTCTTCTATGACC+TGG - chr1.2:17083506-17083525 None:intergenic 45.0%
CTGAGGAGTCACATGAAGTA+AGG + chr1.2:17083028-17083047 MS.gene070703:intron 45.0%
CTGATGGCATCTCTATTGGA+GGG - chr1.2:17083427-17083446 None:intergenic 45.0%
GAAAACACCATCCCTTACTG+CGG + chr1.2:17082142-17082161 MS.gene070703:CDS 45.0%
GAATGGTCAATTGCAGTCCA+TGG - chr1.2:17083233-17083252 None:intergenic 45.0%
GGCTACTCATGACAACAGAA+TGG - chr1.2:17083250-17083269 None:intergenic 45.0%
GTAGAAGGATACTGAGCTGA+TGG - chr1.2:17083443-17083462 None:intergenic 45.0%
TAGGAACGGGGTACGTATAA+GGG - chr1.2:17083271-17083290 None:intergenic 45.0%
TGACCGTGAGAAAATCAGGA+GGG + chr1.2:17082351-17082370 MS.gene070703:CDS 45.0%
TGAGCTGATGGCATCTCTAT+TGG - chr1.2:17083431-17083450 None:intergenic 45.0%
TGATAGACCACGGAATGACA+AGG + chr1.2:17082921-17082940 MS.gene070703:CDS 45.0%
TGATTCTTCTGCCGCAGTAA+GGG - chr1.2:17082156-17082175 None:intergenic 45.0%
TTGTCATTCCGTGGTCTATC+AGG - chr1.2:17082922-17082941 None:intergenic 45.0%
! AGTAAGGGATGGTGTTTTCG+AGG - chr1.2:17082141-17082160 None:intergenic 45.0%
! GATCCCTCCTGATTTTCTCA+CGG - chr1.2:17082357-17082376 None:intergenic 45.0%
!! ACCTGTTGTGTTGATGATCC+AGG - chr1.2:17083587-17083606 None:intergenic 45.0%
!! ATTGGCATTGGCATAGGAAC+GGG - chr1.2:17083284-17083303 None:intergenic 45.0%
!! GATTGGCATTGGCATAGGAA+CGG - chr1.2:17083285-17083304 None:intergenic 45.0%
!! GGTGTTTTCGAGGTGTTTAG+CGG - chr1.2:17082131-17082150 None:intergenic 45.0%
!! ATGATAAAAAAAAAAAAAAA+GGG - chr1.2:17082513-17082532 None:intergenic 5.0%
!! TATGATAAAAAAAAAAAAAA+AGG - chr1.2:17082514-17082533 None:intergenic 5.0%
AAAACAGGCAGTCACGAGTC+AGG + chr1.2:17082570-17082589 MS.gene070703:intron 50.0%
AATTGCAGTCCATGGTGGCA+TGG - chr1.2:17083225-17083244 None:intergenic 50.0%
AGGCTGACCGTGAGAAAATC+AGG + chr1.2:17082347-17082366 MS.gene070703:CDS 50.0%
AGGTTGCATAGGTGGGTGAA+TGG - chr1.2:17083324-17083343 None:intergenic 50.0%
ATGGTTGCCTTGTCATTCCG+TGG - chr1.2:17082931-17082950 None:intergenic 50.0%
CTGACCGTGAGAAAATCAGG+AGG + chr1.2:17082350-17082369 MS.gene070703:CDS 50.0%
GAGCCAGTATTCTGCATCTC+AGG + chr1.2:17083766-17083785 MS.gene070703:CDS 50.0%
GAGCTTGAGCTTAAGATGCC+TGG + chr1.2:17083566-17083585 MS.gene070703:CDS 50.0%
GCCTGGATCATCAACACAAC+AGG + chr1.2:17083583-17083602 MS.gene070703:CDS 50.0%
GCTGATGGCATCTCTATTGG+AGG - chr1.2:17083428-17083447 None:intergenic 50.0%
GTCCCTGAGATGCAGAATAC+TGG - chr1.2:17083772-17083791 None:intergenic 50.0%
GTGATTCTTCTGCCGCAGTA+AGG - chr1.2:17082157-17082176 None:intergenic 50.0%
GTGTAGAGAGAGGAGTGAGA+TGG + chr1.2:17082291-17082310 MS.gene070703:intron 50.0%
TCAAGCTCTGTTGCCACATC+TGG - chr1.2:17083554-17083573 None:intergenic 50.0%
TGGTCAATTGCAGTCCATGG+TGG - chr1.2:17083230-17083249 None:intergenic 50.0%
!! GTTTTCGAGGTGTTTAGCGG+CGG - chr1.2:17082128-17082147 None:intergenic 50.0%
!! TTACGATTGGTGATGGGCAG+CGG - chr1.2:17082182-17082201 None:intergenic 50.0%
!! TTGGCATTGGCATAGGAACG+GGG - chr1.2:17083283-17083302 None:intergenic 50.0%
AATGCCAATCCCTCGTGGTC+CGG + chr1.2:17083295-17083314 MS.gene070703:CDS 55.0%
ATGCCAATGCCAATCCCTCG+TGG + chr1.2:17083290-17083309 MS.gene070703:CDS 55.0%
CAGCGTCAGCAACACTCCAA+AGG + chr1.2:17083808-17083827 MS.gene070703:CDS 55.0%
GAATGGAAACCGGACCACGA+GGG - chr1.2:17083307-17083326 None:intergenic 55.0%
GAGTCTCGAAGCAAGTCACC+AGG + chr1.2:17083485-17083504 MS.gene070703:CDS 55.0%
TCTTCTGCCGCAGTAAGGGA+TGG - chr1.2:17082152-17082171 None:intergenic 55.0%
TGAATGGAAACCGGACCACG+AGG - chr1.2:17083308-17083327 None:intergenic 55.0%
!! CGAGGGATTGGCATTGGCAT+AGG - chr1.2:17083290-17083309 None:intergenic 55.0%
!! TGGAGTGTTGCTGACGCTGT+TGG - chr1.2:17083807-17083826 None:intergenic 55.0%
ACGAGCTGTGCAAGCCAGCT+CGG + chr1.2:17082480-17082499 MS.gene070703:intron 60.0%
GAAACCGGACCACGAGGGAT+TGG - chr1.2:17083302-17083321 None:intergenic 60.0%
GAGTCAGAGCCATGCCACCA+TGG + chr1.2:17083213-17083232 MS.gene070703:CDS 60.0%
GGGATAGCTGGAGCCGAGAA+TGG - chr1.2:17083407-17083426 None:intergenic 60.0%
! CTGGCTTGCACAGCTCGTAG+TGG - chr1.2:17082478-17082497 None:intergenic 60.0%
! GGACCACGAGGGATTGGCAT+TGG - chr1.2:17083296-17083315 None:intergenic 60.0%
! TTCGAGGTGTTTAGCGGCGG+AGG - chr1.2:17082125-17082144 None:intergenic 60.0%
!! GCATGGCTCTGACTCTCTGC+TGG - chr1.2:17083208-17083227 None:intergenic 60.0%
TGTTTAGCGGCGGAGGCGGT+GGG - chr1.2:17082118-17082137 None:intergenic 65.0%
! GAGGTGTTTAGCGGCGGAGG+CGG - chr1.2:17082122-17082141 None:intergenic 65.0%
!! CGATTGGTGATGGGCAGCGG+AGG - chr1.2:17082179-17082198 None:intergenic 65.0%
GTGTTTAGCGGCGGAGGCGG+TGG - chr1.2:17082119-17082138 None:intergenic 70.0%
AAAAGGGGGGGGGGCCGAGC+TGG - chr1.2:17082497-17082516 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 17082098 17083838 17082098 ID=MS.gene070703
chr1.2 mRNA 17082098 17083838 17082098 ID=MS.gene070703.t1;Parent=MS.gene070703
chr1.2 exon 17082098 17082213 17082098 ID=MS.gene070703.t1.exon1;Parent=MS.gene070703.t1
chr1.2 CDS 17082098 17082213 17082098 ID=cds.MS.gene070703.t1;Parent=MS.gene070703.t1
chr1.2 exon 17082297 17082415 17082297 ID=MS.gene070703.t1.exon2;Parent=MS.gene070703.t1
chr1.2 CDS 17082297 17082415 17082297 ID=cds.MS.gene070703.t1;Parent=MS.gene070703.t1
chr1.2 exon 17082917 17083044 17082917 ID=MS.gene070703.t1.exon3;Parent=MS.gene070703.t1
chr1.2 CDS 17082917 17083044 17082917 ID=cds.MS.gene070703.t1;Parent=MS.gene070703.t1
chr1.2 exon 17083128 17083604 17083128 ID=MS.gene070703.t1.exon4;Parent=MS.gene070703.t1
chr1.2 CDS 17083128 17083604 17083128 ID=cds.MS.gene070703.t1;Parent=MS.gene070703.t1
chr1.2 exon 17083692 17083838 17083692 ID=MS.gene070703.t1.exon5;Parent=MS.gene070703.t1
chr1.2 CDS 17083692 17083838 17083692 ID=cds.MS.gene070703.t1;Parent=MS.gene070703.t1
Gene Sequence

>MS.gene070703

ATGATCAATCAATGGAACCCACCGCCTCCGCCGCTAAACACCTCGAAAACACCATCCCTTACTGCGGCAGAAGAATCACCTCCGCTGCCCATCACCAATCGTAAAGATATTGTCAGGTATAAACGTTATTGTTGTGGTTAGTGTTTTTTGTTGAAGTGAGTAATGATGAATTGAGTGTGTTGTGTTGTTGTTTGTGTAGAGAGAGGAGTGAGATGGAACCAAGTGTTGTTGTTGCTAGAAAAGTTCAGAAGGCTGACCGTGAGAAAATCAGGAGGGATCGTTTAAATGATCATTTTCATCAATTGGGAAACGTAATAGGTAAGTTTTTTAATCTTGTTTGGATTCACACTTAGTTTTTTTCATAGAACACAACTCAGCCACTACGAGCTGTGCAAGCCAGCTCGGCCCCCCCCCCTTTTTTTTTTTTTTTATCATATCAACATCTTTTAATTAAGAAAACATTGCAGTAAGGAAAACAGGCAGTCACGAGTCAGGATATGATATCTACAATTGGATGAAGAGTAGACTGCTAGTATTCTAACTTCACCAAATCAGTGTGAAAATACATTTCAATATACGAGTTGTCTGATATTTTCATCTAAGATCTAAATTCAAAAAAACTAGGGGTCAAGCTTGTTTTGAAAGATTTAGGTTTGGATTTACAGTAAATACTCAAATTGGTTACGATAAAAATATGGAGAACTGTCTAGTCTCTATAAAATGAAAAATAGTAATTTGGTCCTTAAGAACTTAAAATAGTAATTTGAAATGGTAGTTGTTCCGTAGTTGAGATATTCATGTTCGTTGTACATGATGCAGATCCTGATAGACCACGGAATGACAAGGCAACCATCATCACAGAGACAATTCAAGTGCTAAAGGACATAACATCTGAAGTTGATAGACTGAAAACAGAGCATAAATCACTTTCTGAGGAGTCACATGAAGTAAGGTTCTTTTATTCGTTCAATTTGTCTTTAAGATCAAGCTTGTGTGCAGCTCATTTATTCATTTGATTTTATATTCACAGCTAATACAAGAAAAGAATGAACTCCGAGAAGAGAAAGCGTCTTTAAAATCCGATATAGAAAATCTTAATTCTCAGTACCAGCAGAGAGTCAGAGCCATGCCACCATGGACTGCAATTGACCATTCTGTTGTCATGAGTAGCCCTTATACGTACCCCGTTCCTATGCCAATGCCAATCCCTCGTGGTCCGGTTTCCATTCACCCACCTATGCAACCTTTTCCTTACTATGGAAACCAAAATCCTGGTCATATTCCAAGTCTATCCTCAATGTATATTCCATTCTCGGCTCCAGCTATCCCTCCAATAGAGATGCCATCAGCTCAGTATCCTTCTACATCCCACGTGTTTAGTCGAAAAGAGTCTCGAAGCAAGTCACCAGGTCATAGAAGAAGACCTAGTGATGCAGAAAGATGTAGTGTGTCTCCAGATGTGGCAACAGAGCTTGAGCTTAAGATGCCTGGATCATCAACACAACAGGTATATTATAAACAATTTATATATATCTCAAAAATCCAAACTTGTTTCAGTGCTAAAACTTACTGACCTTCATTCTGATTTCTATAGGATTGCACATCTAGAGGAAAAAAGGCAAAGCATTCGGTGATGAGTGATAGAATCATCATAGATGAGAGTGCTTCGAGCCAGTATTCTGCATCTCAGGGACTTCAAGATAGCTCCAACAGCGTCAGCAACACTCCAAAGGCTAGTTAA
Protein sequence

>MS.gene070703.t1

MINQWNPPPPPLNTSKTPSLTAAEESPPLPITNRKDIVRERSEMEPSVVVARKVQKADREKIRRDRLNDHFHQLGNVIDPDRPRNDKATIITETIQVLKDITSEVDRLKTEHKSLSEESHELIQEKNELREEKASLKSDIENLNSQYQQRVRAMPPWTAIDHSVVMSSPYTYPVPMPMPIPRGPVSIHPPMQPFPYYGNQNPGHIPSLSSMYIPFSAPAIPPIEMPSAQYPSTSHVFSRKESRSKSPGHRRRPSDAERCSVSPDVATELELKMPGSSTQQDCTSRGKKAKHSVMSDRIIIDESASSQYSASQGLQDSSNSVSNTPKAS