Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070930.t1 | KEH43846.1 | 94.8 | 401 | 15 | 4 | 1 | 399 | 93 | 489 | 9.80E-179 | 636.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070930.t1 | Q9SBV6 | 51.6 | 126 | 47 | 3 | 65 | 187 | 39 | 153 | 1.7e-22 | 108.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070930.t1 | A0A072VQD1 | 94.8 | 401 | 15 | 4 | 1 | 399 | 93 | 489 | 7.1e-179 | 636.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene070930.t1 | TF | TCP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070930.t1 | MTR_1g103380 | 97.506 | 401 | 4 | 4 | 1 | 399 | 93 | 489 | 0.0 | 798 |
MS.gene070930.t1 | MTR_6g017055 | 39.776 | 357 | 114 | 16 | 84 | 401 | 108 | 402 | 4.44e-47 | 167 |
MS.gene070930.t1 | MTR_7g018500 | 36.438 | 365 | 154 | 12 | 41 | 393 | 57 | 355 | 1.22e-38 | 143 |
MS.gene070930.t1 | MTR_4g111935 | 40.625 | 160 | 66 | 4 | 96 | 238 | 120 | 267 | 2.92e-20 | 92.4 |
MS.gene070930.t1 | MTR_4g079580 | 55.738 | 61 | 27 | 0 | 109 | 169 | 21 | 81 | 6.21e-17 | 82.0 |
MS.gene070930.t1 | MTR_8g463380 | 55.738 | 61 | 27 | 0 | 109 | 169 | 53 | 113 | 1.70e-16 | 81.3 |
MS.gene070930.t1 | MTR_2g078200 | 57.377 | 61 | 26 | 0 | 109 | 169 | 19 | 79 | 2.13e-16 | 79.7 |
MS.gene070930.t1 | MTR_2g090960 | 53.333 | 60 | 28 | 0 | 109 | 168 | 23 | 82 | 2.59e-16 | 80.1 |
MS.gene070930.t1 | MTR_4g109660 | 37.037 | 108 | 67 | 1 | 109 | 216 | 55 | 161 | 2.78e-13 | 70.5 |
MS.gene070930.t1 | MTR_6g015350 | 51.667 | 60 | 29 | 0 | 109 | 168 | 48 | 107 | 4.03e-13 | 70.5 |
MS.gene070930.t1 | MTR_7g015010 | 44.444 | 81 | 45 | 0 | 109 | 189 | 56 | 136 | 2.17e-12 | 68.6 |
MS.gene070930.t1 | MTR_3g026050 | 48.333 | 60 | 31 | 0 | 109 | 168 | 56 | 115 | 2.57e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070930.t1 | AT1G67260 | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 1.12e-26 | 110 |
MS.gene070930.t1 | AT1G67260 | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 1.12e-26 | 110 |
MS.gene070930.t1 | AT1G67260 | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 1.30e-26 | 110 |
MS.gene070930.t1 | AT1G68800 | 68.182 | 66 | 21 | 0 | 110 | 175 | 112 | 177 | 3.98e-21 | 94.7 |
MS.gene070930.t1 | AT1G68800 | 68.182 | 66 | 21 | 0 | 110 | 175 | 112 | 177 | 4.01e-21 | 94.4 |
MS.gene070930.t1 | AT3G18550 | 30.043 | 233 | 104 | 8 | 61 | 235 | 66 | 297 | 1.81e-18 | 87.4 |
MS.gene070930.t1 | AT3G18550 | 31.034 | 232 | 101 | 8 | 61 | 234 | 66 | 296 | 3.23e-18 | 86.7 |
MS.gene070930.t1 | AT4G18390 | 39.850 | 133 | 68 | 2 | 109 | 236 | 41 | 166 | 3.62e-18 | 85.9 |
MS.gene070930.t1 | AT4G18390 | 39.850 | 133 | 68 | 2 | 109 | 236 | 41 | 166 | 3.62e-18 | 85.9 |
MS.gene070930.t1 | AT3G18550 | 29.958 | 237 | 103 | 9 | 61 | 235 | 66 | 301 | 3.73e-18 | 86.7 |
MS.gene070930.t1 | AT3G18550 | 29.958 | 237 | 103 | 9 | 61 | 235 | 66 | 301 | 3.73e-18 | 86.7 |
MS.gene070930.t1 | AT1G30210 | 42.188 | 128 | 57 | 3 | 109 | 236 | 49 | 159 | 2.24e-17 | 83.2 |
MS.gene070930.t1 | AT1G30210 | 42.188 | 128 | 57 | 3 | 109 | 236 | 49 | 159 | 2.24e-17 | 83.2 |
MS.gene070930.t1 | AT1G53230 | 56.452 | 62 | 27 | 0 | 109 | 170 | 48 | 109 | 5.67e-17 | 82.8 |
MS.gene070930.t1 | AT1G53230 | 56.452 | 62 | 27 | 0 | 109 | 170 | 48 | 109 | 5.67e-17 | 82.8 |
MS.gene070930.t1 | AT3G15030 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 1.04e-16 | 82.0 |
MS.gene070930.t1 | AT3G15030 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 1.04e-16 | 82.0 |
MS.gene070930.t1 | AT3G15030 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 1.04e-16 | 82.0 |
MS.gene070930.t1 | AT3G15030 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 1.04e-16 | 82.0 |
MS.gene070930.t1 | AT2G31070 | 56.667 | 60 | 26 | 0 | 109 | 168 | 28 | 87 | 2.64e-16 | 80.5 |
MS.gene070930.t1 | AT3G02150 | 51.667 | 60 | 29 | 0 | 109 | 168 | 73 | 132 | 2.07e-12 | 67.8 |
MS.gene070930.t1 | AT3G02150 | 51.667 | 60 | 29 | 0 | 109 | 168 | 73 | 132 | 2.89e-12 | 68.2 |
MS.gene070930.t1 | AT5G60970 | 46.667 | 60 | 32 | 0 | 109 | 168 | 62 | 121 | 2.59e-11 | 65.1 |
Find 74 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTCTGTCACAACAAAATT+TGG | 0.083599 | 1.4:+79938117 | None:intergenic |
GATGAAGAAGGGAAATTATT+AGG | 0.158390 | 1.4:+79938381 | None:intergenic |
TCCCTTGTTCAACTCCAAAT+TGG | 0.198049 | 1.4:-79937285 | MS.gene070930:CDS |
CCTTAGGGATAGTAGGAATT+AGG | 0.215420 | 1.4:+79937356 | None:intergenic |
AGGAATCCATTATGATTAAA+AGG | 0.231280 | 1.4:-79937420 | MS.gene070930:CDS |
AGAAAAGAAAGGGTACTATT+AGG | 0.235751 | 1.4:+79938342 | None:intergenic |
TGGAGTTGAACAAGGGAATA+AGG | 0.272402 | 1.4:+79937291 | None:intergenic |
TTGGAGCTAGTCTCCCAATT+TGG | 0.297661 | 1.4:+79937271 | None:intergenic |
AAGAAGAGTAGTATTGTTAT+TGG | 0.300314 | 1.4:+79938290 | None:intergenic |
TTGAAACTTGGTAATTCCTT+AGG | 0.318513 | 1.4:+79937340 | None:intergenic |
TCATAATCATCATAACCTAT+TGG | 0.320855 | 1.4:-79937485 | MS.gene070930:CDS |
GGATAGTAGGAATTAGGTTT+TGG | 0.326225 | 1.4:+79937362 | None:intergenic |
AAACAACCAGCAGCAGTTAT+AGG | 0.340022 | 1.4:-79938093 | MS.gene070930:CDS |
GAATGCAACAAGAAGAAATT+AGG | 0.347577 | 1.4:-79937663 | MS.gene070930:CDS |
GAAAAGAAAGGGTACTATTA+GGG | 0.366150 | 1.4:+79938343 | None:intergenic |
CAAGATAATGGCTACAACTT+TGG | 0.372622 | 1.4:-79938162 | MS.gene070930:CDS |
AGAAGAGTAGTATTGTTATT+GGG | 0.374456 | 1.4:+79938291 | None:intergenic |
TTGTAGAGGTTGGAAAATCT+TGG | 0.376948 | 1.4:-79936969 | MS.gene070930:intron |
ATGAAGAAGGGAAATTATTA+GGG | 0.385216 | 1.4:+79938382 | None:intergenic |
CCCTTGTTCAACTCCAAATT+GGG | 0.387307 | 1.4:-79937284 | MS.gene070930:CDS |
GCAATGTTTGAACAAGATAA+TGG | 0.390494 | 1.4:-79938174 | MS.gene070930:CDS |
TAGGTATTTCACTATCCAAT+AGG | 0.395659 | 1.4:+79937470 | None:intergenic |
TTTCCTCCTATAACTGCTGC+TGG | 0.420270 | 1.4:+79938087 | None:intergenic |
AAAAGAAGGGTTACTACTAT+AGG | 0.421997 | 1.4:+79937507 | None:intergenic |
GGTAATTCCTTAGGGATAGT+AGG | 0.423994 | 1.4:+79937349 | None:intergenic |
TGTAGAGGTTGGAAAATCTT+GGG | 0.424816 | 1.4:-79936968 | MS.gene070930:intron |
GTTGAATCTGCACCAGGTCC+AGG | 0.426040 | 1.4:+79937637 | None:intergenic |
AGCCACTCAAGTGTGTTACT+TGG | 0.429932 | 1.4:+79937946 | None:intergenic |
CAATCTGCAAAATTAGCATC+AGG | 0.430784 | 1.4:+79938207 | None:intergenic |
TTATAGGAGGAAAGAAAGAT+AGG | 0.430839 | 1.4:-79938077 | MS.gene070930:CDS |
TTAATATTGTGGTTGAAACT+TGG | 0.430928 | 1.4:+79937328 | None:intergenic |
CTAAAGGGAGAAAATTGAAA+TGG | 0.439828 | 1.4:-79937777 | MS.gene070930:CDS |
ATGGTAGTTGTTCTTCTAAA+GGG | 0.441018 | 1.4:-79937792 | MS.gene070930:CDS |
GAAGAAGAAGATGATGAAGA+AGG | 0.449349 | 1.4:+79938369 | None:intergenic |
AATCATTATTATTAATATTG+TGG | 0.455465 | 1.4:+79937317 | None:intergenic |
TGAAACTTGGTAATTCCTTA+GGG | 0.456765 | 1.4:+79937341 | None:intergenic |
GATGGTAGTTGTTCTTCTAA+AGG | 0.462971 | 1.4:-79937793 | MS.gene070930:CDS |
GTCACAACAAAATTTGGAAT+CGG | 0.465229 | 1.4:+79938123 | None:intergenic |
TCTGGCGGTGGTGGCGGCGA+TGG | 0.465460 | 1.4:-79937811 | MS.gene070930:CDS |
TTATGATGATTATGAAAAGA+AGG | 0.467263 | 1.4:+79937493 | None:intergenic |
AAGAAGAAGATGATGAAGAA+GGG | 0.472483 | 1.4:+79938370 | None:intergenic |
AGTGGCTATTCCACAAAAGT+TGG | 0.483262 | 1.4:+79937252 | None:intergenic |
TCAGTTTCAGTACTATCAAC+AGG | 0.489731 | 1.4:+79937568 | None:intergenic |
ATTGTCAATGAGAAAAGAAA+GGG | 0.521480 | 1.4:+79938332 | None:intergenic |
TATGATGATTATGAAAAGAA+GGG | 0.526879 | 1.4:+79937494 | None:intergenic |
GATTGTCAATGAGAAAAGAA+AGG | 0.527029 | 1.4:+79938331 | None:intergenic |
AGTGAAATACCTAGAGATCA+TGG | 0.535750 | 1.4:-79937460 | MS.gene070930:CDS |
TTAAATCCACCATGATCTCT+AGG | 0.537094 | 1.4:+79937451 | None:intergenic |
GTATTTGTTGAATCTGCACC+AGG | 0.542255 | 1.4:+79937631 | None:intergenic |
TGGTGGATTTAATGTGATTG+AGG | 0.542326 | 1.4:-79937440 | MS.gene070930:CDS |
CCTAATTCCTACTATCCCTA+AGG | 0.544884 | 1.4:-79937356 | MS.gene070930:CDS |
TCCCAATTTGGAGTTGAACA+AGG | 0.545085 | 1.4:+79937283 | None:intergenic |
CAAGAGCAAGAGCTAGAGAA+AGG | 0.553192 | 1.4:-79937714 | MS.gene070930:CDS |
GCAAAATTAGCATCAGGGAA+TGG | 0.555133 | 1.4:+79938213 | None:intergenic |
CAGTAAGATTCACACATCAC+AGG | 0.558791 | 1.4:-79938052 | MS.gene070930:CDS |
GAAATTAGGTACCCTGGACC+TGG | 0.562470 | 1.4:-79937649 | MS.gene070930:CDS |
TTGAATCTGCACCAGGTCCA+GGG | 0.571969 | 1.4:+79937638 | None:intergenic |
CTACATGCTTCTTGAATCCG+TGG | 0.574833 | 1.4:-79937219 | MS.gene070930:intron |
CAAGAAGAAATTAGGTACCC+TGG | 0.600461 | 1.4:-79937655 | MS.gene070930:CDS |
AAACTGAGGCTTATGCAAGA+TGG | 0.603501 | 1.4:-79937552 | MS.gene070930:CDS |
TGTTGATAGTACTGAAACTG+AGG | 0.605008 | 1.4:-79937566 | MS.gene070930:CDS |
AAAATCTTGGGAGGAGCGAA+AGG | 0.610425 | 1.4:-79936956 | MS.gene070930:CDS |
CCCAATTTGGAGTTGAACAA+GGG | 0.612112 | 1.4:+79937284 | None:intergenic |
CACAGGGTTTGAGAGACAGA+AGG | 0.612414 | 1.4:-79938035 | MS.gene070930:CDS |
CAACCAGCAGCAGTTATAGG+AGG | 0.626000 | 1.4:-79938090 | MS.gene070930:CDS |
AATCTGCAAAATTAGCATCA+GGG | 0.626917 | 1.4:+79938208 | None:intergenic |
TGTTACAAGATGTGTAGCAG+TGG | 0.627912 | 1.4:-79937688 | MS.gene070930:CDS |
ACAGGGTTTGAGAGACAGAA+GGG | 0.629239 | 1.4:-79938034 | MS.gene070930:CDS |
GCATGTAGATAGATTCATAG+TGG | 0.634816 | 1.4:+79937234 | None:intergenic |
AGTAAGATTCACACATCACA+GGG | 0.651645 | 1.4:-79938051 | MS.gene070930:CDS |
TGATGTGTTGATGTAGTGAA+AGG | 0.657369 | 1.4:+79938246 | None:intergenic |
AACCAAGTAACACACTTGAG+TGG | 0.665918 | 1.4:-79937948 | MS.gene070930:CDS |
AGAGGTTGGAAAATCTTGGG+AGG | 0.691186 | 1.4:-79936965 | MS.gene070930:intron |
GAAATACCTAGAGATCATGG+TGG | 0.750657 | 1.4:-79937457 | MS.gene070930:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATCATTATTATTAATATTG+TGG | + | chr1.4:79937993-79938012 | None:intergenic | 10.0% |
!! | GTAATTAATTAATGTGTTTG+AGG | - | chr1.4:79938307-79938326 | MS.gene070930:CDS | 20.0% |
!! | TATGATGATTATGAAAAGAA+GGG | + | chr1.4:79937816-79937835 | None:intergenic | 20.0% |
!! | TTATGATGATTATGAAAAGA+AGG | + | chr1.4:79937817-79937836 | None:intergenic | 20.0% |
!!! | TGCTATTTGAATCAAAAAAT+GGG | + | chr1.4:79937465-79937484 | None:intergenic | 20.0% |
!!! | TTGCTATTTGAATCAAAAAA+TGG | + | chr1.4:79937466-79937485 | None:intergenic | 20.0% |
! | AAGAAGAGTAGTATTGTTAT+TGG | + | chr1.4:79937020-79937039 | None:intergenic | 25.0% |
! | ACTTAGTTAATTACTTACCA+CGG | + | chr1.4:79938108-79938127 | None:intergenic | 25.0% |
! | AGGAATCCATTATGATTAAA+AGG | - | chr1.4:79937887-79937906 | MS.gene070930:CDS | 25.0% |
! | ATGAAGAAGGGAAATTATTA+GGG | + | chr1.4:79936928-79936947 | None:intergenic | 25.0% |
! | ATTGTCAATGAGAAAAGAAA+GGG | + | chr1.4:79936978-79936997 | None:intergenic | 25.0% |
! | TCATAATCATCATAACCTAT+TGG | - | chr1.4:79937822-79937841 | MS.gene070930:CDS | 25.0% |
! | TTAATATTGTGGTTGAAACT+TGG | + | chr1.4:79937982-79938001 | None:intergenic | 25.0% |
!! | AATAGCAACAAATCATTTTC+TGG | - | chr1.4:79937478-79937497 | MS.gene070930:CDS | 25.0% |
!! | AGAAGAGTAGTATTGTTATT+GGG | + | chr1.4:79937019-79937038 | None:intergenic | 25.0% |
!! | CATGTTCCTTTTAATCATAA+TGG | + | chr1.4:79937896-79937915 | None:intergenic | 25.0% |
!! | TTGGGAAAATCATTATTTTC+AGG | + | chr1.4:79937001-79937020 | None:intergenic | 25.0% |
!!! | AACACTAATTTGCTAGTTTT+CGG | - | chr1.4:79938383-79938402 | MS.gene070930:CDS | 25.0% |
AAAAGAAGGGTTACTACTAT+AGG | + | chr1.4:79937803-79937822 | None:intergenic | 30.0% | |
AAGAAGAAGATGATGAAGAA+GGG | + | chr1.4:79936940-79936959 | None:intergenic | 30.0% | |
AATCTGCAAAATTAGCATCA+GGG | + | chr1.4:79937102-79937121 | None:intergenic | 30.0% | |
ATGGTAGTTGTTCTTCTAAA+GGG | - | chr1.4:79937515-79937534 | MS.gene070930:CDS | 30.0% | |
CTAAAGGGAGAAAATTGAAA+TGG | - | chr1.4:79937530-79937549 | MS.gene070930:CDS | 30.0% | |
GAATGCAACAAGAAGAAATT+AGG | - | chr1.4:79937644-79937663 | MS.gene070930:CDS | 30.0% | |
GATGAAGAAGGGAAATTATT+AGG | + | chr1.4:79936929-79936948 | None:intergenic | 30.0% | |
GATTGTCAATGAGAAAAGAA+AGG | + | chr1.4:79936979-79936998 | None:intergenic | 30.0% | |
GCAATGTTTGAACAAGATAA+TGG | - | chr1.4:79937133-79937152 | MS.gene070930:intron | 30.0% | |
TAGGTATTTCACTATCCAAT+AGG | + | chr1.4:79937840-79937859 | None:intergenic | 30.0% | |
TTATAGGAGGAAAGAAAGAT+AGG | - | chr1.4:79937230-79937249 | MS.gene070930:CDS | 30.0% | |
! | GTCACAACAAAATTTGGAAT+CGG | + | chr1.4:79937187-79937206 | None:intergenic | 30.0% |
! | TGAAACTTGGTAATTCCTTA+GGG | + | chr1.4:79937969-79937988 | None:intergenic | 30.0% |
! | TTGAAACTTGGTAATTCCTT+AGG | + | chr1.4:79937970-79937989 | None:intergenic | 30.0% |
!! | AGAAAAGAAAGGGTACTATT+AGG | + | chr1.4:79936968-79936987 | None:intergenic | 30.0% |
!! | GAAAAGAAAGGGTACTATTA+GGG | + | chr1.4:79936967-79936986 | None:intergenic | 30.0% |
AGTAAGATTCACACATCACA+GGG | - | chr1.4:79937256-79937275 | MS.gene070930:CDS | 35.0% | |
AGTGAAATACCTAGAGATCA+TGG | - | chr1.4:79937847-79937866 | MS.gene070930:CDS | 35.0% | |
CAATCTGCAAAATTAGCATC+AGG | + | chr1.4:79937103-79937122 | None:intergenic | 35.0% | |
GAAGAAGAAGATGATGAAGA+AGG | + | chr1.4:79936941-79936960 | None:intergenic | 35.0% | |
GATGGTAGTTGTTCTTCTAA+AGG | - | chr1.4:79937514-79937533 | MS.gene070930:CDS | 35.0% | |
GCATGTAGATAGATTCATAG+TGG | + | chr1.4:79938076-79938095 | None:intergenic | 35.0% | |
TCAGTTTCAGTACTATCAAC+AGG | + | chr1.4:79937742-79937761 | None:intergenic | 35.0% | |
TGCTCTGTCACAACAAAATT+TGG | + | chr1.4:79937193-79937212 | None:intergenic | 35.0% | |
TGTAGAGGTTGGAAAATCTT+GGG | - | chr1.4:79938339-79938358 | MS.gene070930:CDS | 35.0% | |
TTAAATCCACCATGATCTCT+AGG | + | chr1.4:79937859-79937878 | None:intergenic | 35.0% | |
TTGTAGAGGTTGGAAAATCT+TGG | - | chr1.4:79938338-79938357 | MS.gene070930:CDS | 35.0% | |
! | AGCAACAAATCATTTTCTGG+CGG | - | chr1.4:79937481-79937500 | MS.gene070930:CDS | 35.0% |
! | CAAGATAATGGCTACAACTT+TGG | - | chr1.4:79937145-79937164 | MS.gene070930:intron | 35.0% |
! | GGATAGTAGGAATTAGGTTT+TGG | + | chr1.4:79937948-79937967 | None:intergenic | 35.0% |
! | TGATGTGTTGATGTAGTGAA+AGG | + | chr1.4:79937064-79937083 | None:intergenic | 35.0% |
!! | TGGTGGATTTAATGTGATTG+AGG | - | chr1.4:79937867-79937886 | MS.gene070930:CDS | 35.0% |
!! | TGTTGATAGTACTGAAACTG+AGG | - | chr1.4:79937741-79937760 | MS.gene070930:CDS | 35.0% |
!!! | TTGAGGTGTTGATTTTGTAG+AGG | - | chr1.4:79938324-79938343 | MS.gene070930:CDS | 35.0% |
AAACAACCAGCAGCAGTTAT+AGG | - | chr1.4:79937214-79937233 | MS.gene070930:intron | 40.0% | |
AAACTGAGGCTTATGCAAGA+TGG | - | chr1.4:79937755-79937774 | MS.gene070930:CDS | 40.0% | |
AACCAAGTAACACACTTGAG+TGG | - | chr1.4:79937359-79937378 | MS.gene070930:CDS | 40.0% | |
AGTGGCTATTCCACAAAAGT+TGG | + | chr1.4:79938058-79938077 | None:intergenic | 40.0% | |
CAAGAAGAAATTAGGTACCC+TGG | - | chr1.4:79937652-79937671 | MS.gene070930:CDS | 40.0% | |
CAGTAAGATTCACACATCAC+AGG | - | chr1.4:79937255-79937274 | MS.gene070930:CDS | 40.0% | |
CCCTTGTTCAACTCCAAATT+GGG | - | chr1.4:79938023-79938042 | MS.gene070930:CDS | 40.0% | |
CCTAATTCCTACTATCCCTA+AGG | - | chr1.4:79937951-79937970 | MS.gene070930:CDS | 40.0% | |
CCTTAGGGATAGTAGGAATT+AGG | + | chr1.4:79937954-79937973 | None:intergenic | 40.0% | |
GAAATACCTAGAGATCATGG+TGG | - | chr1.4:79937850-79937869 | MS.gene070930:CDS | 40.0% | |
GCAAAATTAGCATCAGGGAA+TGG | + | chr1.4:79937097-79937116 | None:intergenic | 40.0% | |
GGTAATTCCTTAGGGATAGT+AGG | + | chr1.4:79937961-79937980 | None:intergenic | 40.0% | |
TCCCTTGTTCAACTCCAAAT+TGG | - | chr1.4:79938022-79938041 | MS.gene070930:CDS | 40.0% | |
TGGAGTTGAACAAGGGAATA+AGG | + | chr1.4:79938019-79938038 | None:intergenic | 40.0% | |
TGTTACAAGATGTGTAGCAG+TGG | - | chr1.4:79937619-79937638 | MS.gene070930:CDS | 40.0% | |
! | CCCAATTTGGAGTTGAACAA+GGG | + | chr1.4:79938026-79938045 | None:intergenic | 40.0% |
! | GTATTTGTTGAATCTGCACC+AGG | + | chr1.4:79937679-79937698 | None:intergenic | 40.0% |
! | TCCCAATTTGGAGTTGAACA+AGG | + | chr1.4:79938027-79938046 | None:intergenic | 40.0% |
!! | AACAAATCATTTTCTGGCGG+TGG | - | chr1.4:79937484-79937503 | MS.gene070930:CDS | 40.0% |
!!! | GGTGTTGATTTTGTAGAGGT+TGG | - | chr1.4:79938328-79938347 | MS.gene070930:CDS | 40.0% |
AAAATCTTGGGAGGAGCGAA+AGG | - | chr1.4:79938351-79938370 | MS.gene070930:CDS | 45.0% | |
ACAGGGTTTGAGAGACAGAA+GGG | - | chr1.4:79937273-79937292 | MS.gene070930:CDS | 45.0% | |
AGAGGTTGGAAAATCTTGGG+AGG | - | chr1.4:79938342-79938361 | MS.gene070930:CDS | 45.0% | |
CAAGAGCAAGAGCTAGAGAA+AGG | - | chr1.4:79937593-79937612 | MS.gene070930:CDS | 45.0% | |
CTACATGCTTCTTGAATCCG+TGG | - | chr1.4:79938088-79938107 | MS.gene070930:CDS | 45.0% | |
TTTCCTCCTATAACTGCTGC+TGG | + | chr1.4:79937223-79937242 | None:intergenic | 45.0% | |
! | AGCCACTCAAGTGTGTTACT+TGG | + | chr1.4:79937364-79937383 | None:intergenic | 45.0% |
! | TTGGAGCTAGTCTCCCAATT+TGG | + | chr1.4:79938039-79938058 | None:intergenic | 45.0% |
!! | AAATCATTTTCTGGCGGTGG+TGG | - | chr1.4:79937487-79937506 | MS.gene070930:CDS | 45.0% |
!! | GAGACTAGCTCCAACTTTTG+TGG | - | chr1.4:79938045-79938064 | MS.gene070930:CDS | 45.0% |
CAACCAGCAGCAGTTATAGG+AGG | - | chr1.4:79937217-79937236 | MS.gene070930:intron | 50.0% | |
CACAGGGTTTGAGAGACAGA+AGG | - | chr1.4:79937272-79937291 | MS.gene070930:CDS | 50.0% | |
GAAATTAGGTACCCTGGACC+TGG | - | chr1.4:79937658-79937677 | MS.gene070930:CDS | 50.0% | |
TTGAATCTGCACCAGGTCCA+GGG | + | chr1.4:79937672-79937691 | None:intergenic | 50.0% | |
GTTGAATCTGCACCAGGTCC+AGG | + | chr1.4:79937673-79937692 | None:intergenic | 55.0% | |
!! | TCATTTTCTGGCGGTGGTGG+CGG | - | chr1.4:79937490-79937509 | MS.gene070930:CDS | 55.0% |
!! | TCTGGCGGTGGTGGCGGCGA+TGG | - | chr1.4:79937496-79937515 | MS.gene070930:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 79936914 | 79938415 | 79936914 | ID=MS.gene070930 |
chr1.4 | mRNA | 79936914 | 79938415 | 79936914 | ID=MS.gene070930.t1;Parent=MS.gene070930 |
chr1.4 | exon | 79937220 | 79938415 | 79937220 | ID=MS.gene070930.t1.exon1;Parent=MS.gene070930.t1 |
chr1.4 | CDS | 79937220 | 79938415 | 79937220 | ID=cds.MS.gene070930.t1;Parent=MS.gene070930.t1 |
chr1.4 | exon | 79936914 | 79936983 | 79936914 | ID=MS.gene070930.t1.exon2;Parent=MS.gene070930.t1 |
chr1.4 | CDS | 79936914 | 79936983 | 79936914 | ID=cds.MS.gene070930.t1;Parent=MS.gene070930.t1 |
Gene Sequence |
Protein sequence |