AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070940.t1 MTR_1g103190 81.818 275 26 4 132 405 4 255 1.01e-144 412
MS.gene070940.t1 MTR_1g103230 51.026 341 109 9 95 401 193 509 1.18e-86 276
MS.gene070940.t1 MTR_5g006530 35.873 315 138 8 108 403 292 561 3.38e-37 144
MS.gene070940.t1 MTR_5g006530 35.647 317 140 8 106 403 66 337 4.21e-37 142
MS.gene070940.t1 MTR_1g103220 45.405 185 75 4 46 214 76 250 3.56e-33 125
MS.gene070940.t1 MTR_2g049305 44.211 95 34 3 316 395 45 135 1.70e-15 77.0
MS.gene070940.t1 MTR_1g012020 41.975 81 37 2 322 392 480 560 2.58e-12 69.3
MS.gene070940.t1 MTR_1g103180 33.333 111 64 2 261 369 107 209 9.05e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070940.t1 AT3G22760 47.959 98 41 2 310 397 175 272 6.42e-19 89.0
MS.gene070940.t1 AT3G22760 47.959 98 41 2 310 397 298 395 7.87e-19 89.0
MS.gene070940.t1 AT4G14770 51.111 90 36 2 316 397 353 442 3.78e-18 87.0
MS.gene070940.t1 AT4G14770 51.111 90 36 2 316 397 333 422 4.51e-18 86.7
MS.gene070940.t1 AT4G14770 51.111 90 36 2 316 397 334 423 4.72e-18 86.7
MS.gene070940.t1 AT3G22780 50.000 86 35 2 320 397 383 468 1.13e-17 85.5
MS.gene070940.t1 AT3G04850 47.143 70 34 1 331 397 451 520 5.24e-15 77.4

Find 78 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGCCCATGTTGCTTTAA+TGG 0.092114 1.4:-79803987 MS.gene070940:CDS
TCAGAAATTTGTACAGCTTT+AGG 0.216739 1.4:+79802371 None:intergenic
CCGATTGATCCATCTTCTTT+TGG 0.237778 1.4:-79803039 MS.gene070940:CDS
GTATATAGCTTGCACGTATT+AGG 0.338086 1.4:-79803545 MS.gene070940:intron
TTGAGGGTGCAACAAATATT+CGG 0.338203 1.4:-79804033 MS.gene070940:CDS
GAAAACGAAAAGATGTCTTC+TGG 0.352349 1.4:-79803303 MS.gene070940:CDS
TCATCATCCACTCTCTGAAA+TGG 0.355771 1.4:+79803956 None:intergenic
TTCACAAATGGAAAGACAAT+TGG 0.364451 1.4:-79803205 MS.gene070940:CDS
GTTCACAGCCAAGCAATTCA+TGG 0.367351 1.4:+79804257 None:intergenic
ATATCCTGAGACAAAACTTC+AGG 0.375494 1.4:+79804193 None:intergenic
TATTGTGAGTGCTTTGCTGC+TGG 0.387898 1.4:-79802500 MS.gene070940:CDS
TCAAGGAAGGACTCAGTTGC+AGG 0.389511 1.4:-79804226 MS.gene070940:CDS
GATGAAATTAACTATGTCCT+TGG 0.406817 1.4:-79804079 MS.gene070940:CDS
ATAGTTGTTCCTTTGCGAAC+TGG 0.409260 1.4:+79803479 None:intergenic
GTTCAGGCTACAAAAGATTT+CGG 0.410540 1.4:-79803165 MS.gene070940:CDS
ATATTTGTTGCACCCTCAAT+TGG 0.411515 1.4:+79804037 None:intergenic
TCACAAATGGAAAGACAATT+GGG 0.417381 1.4:-79803204 MS.gene070940:CDS
GCCATCAGAGAATGAAGTTC+AGG 0.423427 1.4:-79803181 MS.gene070940:CDS
GCTTGCAAAACACAGCTTTG+TGG 0.428792 1.4:+79803360 None:intergenic
TGAGCTTCCAGATCTGTATC+AGG 0.428846 1.4:+79802431 None:intergenic
TGAGGGTGCAACAAATATTC+GGG 0.440869 1.4:-79804032 MS.gene070940:CDS
ATCACTGGTCCCTTCACAAA+TGG 0.442761 1.4:-79803217 MS.gene070940:CDS
ATTTCATCAATTGAGATTTG+AGG 0.455082 1.4:+79804094 None:intergenic
TCAATTGAGATTTGAGGATC+AGG 0.460451 1.4:+79804100 None:intergenic
CATCATCCACTCTCTGAAAT+GGG 0.464052 1.4:+79803957 None:intergenic
TCTTGTCAGATTCTGTTGTA+CGG 0.466009 1.4:+79803433 None:intergenic
TGATTTGAACCAAAAGAAGA+TGG 0.475611 1.4:+79803030 None:intergenic
CCAAAAGAAGATGGATCAAT+CGG 0.475851 1.4:+79803039 None:intergenic
TATGTCCTTGGATTACTTGA+CGG 0.476448 1.4:-79804067 MS.gene070940:CDS
TTGCATCTCTCTGCAAGGCA+AGG 0.488052 1.4:-79803249 MS.gene070940:CDS
AAATAAACCTGATACAGATC+TGG 0.488763 1.4:-79802438 MS.gene070940:CDS
CTTGTCAGATTCTGTTGTAC+GGG 0.497504 1.4:+79803434 None:intergenic
CGAAGAGTAGACTGGTGATA+AGG 0.502503 1.4:+79804299 None:intergenic
GTCGATATCCATGAATTGCT+TGG 0.503067 1.4:-79804265 MS.gene070940:CDS
GCCTGAACTTCATTCTCTGA+TGG 0.525870 1.4:+79803180 None:intergenic
AATTGTCTTTCCATTTGTGA+AGG 0.532237 1.4:+79803207 None:intergenic
GAGAAGGACAATGATAGCGC+AGG 0.533624 1.4:-79803070 MS.gene070940:CDS
CTTCTTTGCATCTCTCTGCA+AGG 0.540532 1.4:-79803254 MS.gene070940:CDS
TGACGGCTCAGAACCAATTG+AGG 0.541269 1.4:-79804050 MS.gene070940:CDS
TGCATCTCTCTGCAAGGCAA+GGG 0.545888 1.4:-79803248 MS.gene070940:CDS
GCTGTGAACAAGACGGCTCA+AGG 0.547419 1.4:-79804243 MS.gene070940:CDS
TTCAAATCATGAAAAGGAAG+AGG 0.548313 1.4:-79803016 MS.gene070940:CDS
TTTGTGAAGGGACCAGTGAT+AGG 0.549970 1.4:+79803220 None:intergenic
CCCGAAAAGGACAATGAAAG+TGG 0.550988 1.4:-79803133 MS.gene070940:CDS
CTTCTCATCGAAGAGTAGAC+TGG 0.552209 1.4:+79804291 None:intergenic
CAAATCTAACTAAGAAACAA+AGG 0.553444 1.4:-79802836 MS.gene070940:intron
GCAAGGGCATTGCCTATCAC+TGG 0.554620 1.4:-79803232 MS.gene070940:CDS
AGGCTACAAAAGATTTCGGT+CGG 0.555494 1.4:-79803161 MS.gene070940:CDS
TCGGTCGGAGTACCCCGAAA+AGG 0.558263 1.4:-79803146 MS.gene070940:CDS
ATTGTCTTTCCATTTGTGAA+GGG 0.558593 1.4:+79803208 None:intergenic
GCTGCTGGAGTCTACTGCAC+AGG 0.566140 1.4:-79802485 MS.gene070940:CDS
AGGACTCAGTTGCAGGTGAA+AGG 0.567399 1.4:-79804219 MS.gene070940:CDS
TGTTATCCATTAAAGCAACA+TGG 0.567637 1.4:+79803981 None:intergenic
AAATCTAACTAAGAAACAAA+GGG 0.569609 1.4:-79802835 MS.gene070940:intron
TCTTGCTTAAATCATTACAA+TGG 0.572008 1.4:-79803330 MS.gene070940:CDS
GACGGCTCAGAACCAATTGA+GGG 0.574779 1.4:-79804049 MS.gene070940:CDS
TGAACAAGACGGCTCAAGGA+AGG 0.575400 1.4:-79804239 MS.gene070940:CDS
CATGCATGAGTTGAATCTGT+TGG 0.576261 1.4:+79804142 None:intergenic
AGAAGGACAATGATAGCGCA+GGG 0.582541 1.4:-79803069 MS.gene070940:CDS
TGCAGAGAGATGCAAAGAAG+AGG 0.586670 1.4:+79803257 None:intergenic
TAACAACCCATTTCAGAGAG+TGG 0.588078 1.4:-79803963 MS.gene070940:CDS
TACAGATCTGGAAGCTCACA+CGG 0.588658 1.4:-79802426 MS.gene070940:CDS
CAACAGATTCAACTCATGCA+TGG 0.591788 1.4:-79804141 MS.gene070940:CDS
AGTTAAATCAAAACATGAGA+AGG 0.592480 1.4:-79803086 MS.gene070940:CDS
ACAGCTTTAGGAACAAATGC+AGG 0.596314 1.4:+79802383 None:intergenic
GTTATCCATTAAAGCAACAT+GGG 0.599875 1.4:+79803982 None:intergenic
CTGAGCCGTCAAGTAATCCA+AGG 0.629208 1.4:+79804062 None:intergenic
CTGAGATGACCAGTTCGCAA+AGG 0.633916 1.4:-79803488 MS.gene070940:CDS
GCTTTAGGAACAAATGCAGG+TGG 0.636351 1.4:+79802386 None:intergenic
AGAGTAGACTGGTGATAAGG+AGG 0.642260 1.4:+79804302 None:intergenic
GTATTAGGCGCTGTGTAGAG+AGG 0.655082 1.4:-79803530 MS.gene070940:CDS
ATTTCAGAGAGTGGATGATG+AGG 0.656749 1.4:-79803954 MS.gene070940:intron
GTACAACAGAATCTGACAAG+AGG 0.660872 1.4:-79803431 MS.gene070940:CDS
TTCGGGAAGATAATCAAACA+CGG 0.666708 1.4:-79804015 MS.gene070940:CDS
TCGGGAAGATAATCAAACAC+GGG 0.667048 1.4:-79804014 MS.gene070940:CDS
TTGCTTGGCTGTGAACAAGA+CGG 0.667927 1.4:-79804250 MS.gene070940:CDS
CACAAATGGAAAGACAATTG+GGG 0.676698 1.4:-79803203 MS.gene070940:CDS
GAAGGACAATGATAGCGCAG+GGG 0.746995 1.4:-79803068 MS.gene070940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAACTAACATATAATAA+TGG + chr1.4:79803761-79803780 None:intergenic 10.0%
!! TAAGAAAACAATATAAATTA+TGG + chr1.4:79803971-79803990 None:intergenic 10.0%
!!! TGAAAGTAATTTTATATTTA+AGG + chr1.4:79804053-79804072 None:intergenic 10.0%
!! AAATCTAACTAAGAAACAAA+GGG - chr1.4:79803830-79803849 MS.gene070940:intron 20.0%
!! GTTTAATTGCATACTATTAA+AGG + chr1.4:79804121-79804140 None:intergenic 20.0%
!! TCACAATAACTGAAAAATAA+AGG + chr1.4:79804153-79804172 None:intergenic 20.0%
! AGTTAAATCAAAACATGAGA+AGG - chr1.4:79803579-79803598 MS.gene070940:intron 25.0%
! AGTTTATTCAAACTTGTGAA+TGG + chr1.4:79802893-79802912 None:intergenic 25.0%
! ATTCACAAGTTTGAATAAAC+TGG - chr1.4:79802892-79802911 MS.gene070940:intron 25.0%
! ATTTCATCAATTGAGATTTG+AGG + chr1.4:79802574-79802593 None:intergenic 25.0%
! CAAATCTAACTAAGAAACAA+AGG - chr1.4:79803829-79803848 MS.gene070940:intron 25.0%
! TAAAATTACTTTCATCGAGT+AGG - chr1.4:79804059-79804078 MS.gene070940:CDS 25.0%
! TCTTGCTTAAATCATTACAA+TGG - chr1.4:79803335-79803354 MS.gene070940:CDS 25.0%
! TTGCAATTCAATATTGTTGT+TGG - chr1.4:79802972-79802991 MS.gene070940:CDS 25.0%
!! ATATTGTTTTCTTAGTAAGC+TGG - chr1.4:79803977-79803996 MS.gene070940:CDS 25.0%
!!! AATGGATTAAACAATCCTAA+TGG + chr1.4:79802875-79802894 None:intergenic 25.0%
!!! AATTGCAATTCTAAAGCATA+TGG + chr1.4:79802960-79802979 None:intergenic 25.0%
!!! ATGTGTTTTTTATGTCCATT+AGG - chr1.4:79802857-79802876 MS.gene070940:intron 25.0%
!!! TATTTTTTGAGCTCAATTTG+AGG + chr1.4:79804327-79804346 None:intergenic 25.0%
!!! TTTTGGTTCAAATCATGAAA+AGG - chr1.4:79803643-79803662 MS.gene070940:intron 25.0%
AAATAAACCTGATACAGATC+TGG - chr1.4:79804227-79804246 MS.gene070940:CDS 30.0%
AATTGTCTTTCCATTTGTGA+AGG + chr1.4:79803461-79803480 None:intergenic 30.0%
ATTGTCTTTCCATTTGTGAA+GGG + chr1.4:79803460-79803479 None:intergenic 30.0%
GAATAAAGATTATCAAGCAG+TGG + chr1.4:79803739-79803758 None:intergenic 30.0%
GATGAAATTAACTATGTCCT+TGG - chr1.4:79802586-79802605 MS.gene070940:intron 30.0%
GTTATCCATTAAAGCAACAT+GGG + chr1.4:79802686-79802705 None:intergenic 30.0%
TCACAAATGGAAAGACAATT+GGG - chr1.4:79803461-79803480 MS.gene070940:CDS 30.0%
TCAGAAATTTGTACAGCTTT+AGG + chr1.4:79804297-79804316 None:intergenic 30.0%
TGATTTGAACCAAAAGAAGA+TGG + chr1.4:79803638-79803657 None:intergenic 30.0%
TGGTCATATAAATATGCAGA+AGG + chr1.4:79802940-79802959 None:intergenic 30.0%
TGTTATCCATTAAAGCAACA+TGG + chr1.4:79802687-79802706 None:intergenic 30.0%
TTCAAATCATGAAAAGGAAG+AGG - chr1.4:79803649-79803668 MS.gene070940:intron 30.0%
TTCACAAATGGAAAGACAAT+TGG - chr1.4:79803460-79803479 MS.gene070940:CDS 30.0%
! AAACTACTTTCCTTTTCCTT+TGG + chr1.4:79803703-79803722 None:intergenic 30.0%
! AACTACTTTCCTTTTCCTTT+GGG + chr1.4:79803702-79803721 None:intergenic 30.0%
!! CAAAATCAATGTTTGGTGTT+AGG + chr1.4:79803798-79803817 None:intergenic 30.0%
!! TCTAAAACTTGCACCTTTTT+GGG - chr1.4:79803902-79803921 MS.gene070940:intron 30.0%
!! TGGTTTTTAAACTGACTTCA+AGG - chr1.4:79803997-79804016 MS.gene070940:CDS 30.0%
!!! TTCTAAAACTTGCACCTTTT+TGG - chr1.4:79803901-79803920 MS.gene070940:intron 30.0%
ATATCCTGAGACAAAACTTC+AGG + chr1.4:79802475-79802494 None:intergenic 35.0%
CACAAATGGAAAGACAATTG+GGG - chr1.4:79803462-79803481 MS.gene070940:CDS 35.0%
CCAAAAGAAGATGGATCAAT+CGG + chr1.4:79803629-79803648 None:intergenic 35.0%
GAAAACGAAAAGATGTCTTC+TGG - chr1.4:79803362-79803381 MS.gene070940:CDS 35.0%
GTTCAGGCTACAAAAGATTT+CGG - chr1.4:79803500-79803519 MS.gene070940:CDS 35.0%
TATGTCCTTGGATTACTTGA+CGG - chr1.4:79802598-79802617 MS.gene070940:intron 35.0%
TCAATTGAGATTTGAGGATC+AGG + chr1.4:79802568-79802587 None:intergenic 35.0%
TCATCGAGTAGGTTCTATAT+GGG - chr1.4:79804070-79804089 MS.gene070940:CDS 35.0%
TCTTGTCAGATTCTGTTGTA+CGG + chr1.4:79803235-79803254 None:intergenic 35.0%
TTCATCGAGTAGGTTCTATA+TGG - chr1.4:79804069-79804088 MS.gene070940:CDS 35.0%
TTCGGGAAGATAATCAAACA+CGG - chr1.4:79802650-79802669 MS.gene070940:intron 35.0%
! ACTACTTTCCTTTTCCTTTG+GGG + chr1.4:79803701-79803720 None:intergenic 35.0%
! ATATTTGTTGCACCCTCAAT+TGG + chr1.4:79802631-79802650 None:intergenic 35.0%
! CTAAAACTTGCACCTTTTTG+GGG - chr1.4:79803903-79803922 MS.gene070940:intron 35.0%
! GTATATAGCTTGCACGTATT+AGG - chr1.4:79803120-79803139 MS.gene070940:CDS 35.0%
! TAAAACTTGCACCTTTTTGG+GGG - chr1.4:79803904-79803923 MS.gene070940:intron 35.0%
! TCCACTTTCATTGTCCTTTT+CGG + chr1.4:79803536-79803555 None:intergenic 35.0%
! TTGAGGGTGCAACAAATATT+CGG - chr1.4:79802632-79802651 MS.gene070940:intron 35.0%
!!! ACACCAAACATTGATTTTGC+AGG - chr1.4:79803799-79803818 MS.gene070940:intron 35.0%
AGGCTACAAAAGATTTCGGT+CGG - chr1.4:79803504-79803523 MS.gene070940:CDS 40.0%
ATAGTTGTTCCTTTGCGAAC+TGG + chr1.4:79803189-79803208 None:intergenic 40.0%
ATTTCAGAGAGTGGATGATG+AGG - chr1.4:79802711-79802730 MS.gene070940:intron 40.0%
CAACAGATTCAACTCATGCA+TGG - chr1.4:79802524-79802543 MS.gene070940:intron 40.0%
CTTGTCAGATTCTGTTGTAC+GGG + chr1.4:79803234-79803253 None:intergenic 40.0%
GTACAACAGAATCTGACAAG+AGG - chr1.4:79803234-79803253 MS.gene070940:CDS 40.0%
GTCGATATCCATGAATTGCT+TGG - chr1.4:79802400-79802419 MS.gene070940:CDS 40.0%
GTGCCTGCAAAATCAATGTT+TGG + chr1.4:79803805-79803824 None:intergenic 40.0%
TAACAACCCATTTCAGAGAG+TGG - chr1.4:79802702-79802721 MS.gene070940:intron 40.0%
TCGGGAAGATAATCAAACAC+GGG - chr1.4:79802651-79802670 MS.gene070940:intron 40.0%
! AGCTGTGTTTTGCAAGCAAA+TGG - chr1.4:79803311-79803330 MS.gene070940:CDS 40.0%
! CACTTTCATTGTCCTTTTCG+GGG + chr1.4:79803534-79803553 None:intergenic 40.0%
! CATGCATGAGTTGAATCTGT+TGG + chr1.4:79802526-79802545 None:intergenic 40.0%
! CCACTTTCATTGTCCTTTTC+GGG + chr1.4:79803535-79803554 None:intergenic 40.0%
! CCGATTGATCCATCTTCTTT+TGG - chr1.4:79803626-79803645 MS.gene070940:intron 40.0%
! CTACTTTCCTTTTCCTTTGG+GGG + chr1.4:79803700-79803719 None:intergenic 40.0%
! GGATCACTAGTGTGTTTTCT+AGG + chr1.4:79803287-79803306 None:intergenic 40.0%
! TCATCATCCACTCTCTGAAA+TGG + chr1.4:79802712-79802731 None:intergenic 40.0%
! TCGCAGTTTTTACATCTGCA+AGG + chr1.4:79804207-79804226 None:intergenic 40.0%
! TGAGGGTGCAACAAATATTC+GGG - chr1.4:79802633-79802652 MS.gene070940:intron 40.0%
!! ACAGCTTTAGGAACAAATGC+AGG + chr1.4:79804285-79804304 None:intergenic 40.0%
!! AGTGTGTTTTCTAGGAAGCA+CGG + chr1.4:79803279-79803298 None:intergenic 40.0%
!! CATCATCCACTCTCTGAAAT+GGG + chr1.4:79802711-79802730 None:intergenic 40.0%
!! GAAACCTGAAGTTTTGTCTC+AGG - chr1.4:79802468-79802487 MS.gene070940:CDS 40.0%
!! TCTTGCCCATGTTGCTTTAA+TGG - chr1.4:79802678-79802697 MS.gene070940:intron 40.0%
AGAGTAGACTGGTGATAAGG+AGG + chr1.4:79802366-79802385 None:intergenic 45.0%
ATCACTGGTCCCTTCACAAA+TGG - chr1.4:79803448-79803467 MS.gene070940:CDS 45.0%
CCCGAAAAGGACAATGAAAG+TGG - chr1.4:79803532-79803551 MS.gene070940:CDS 45.0%
CGAAGAGTAGACTGGTGATA+AGG + chr1.4:79802369-79802388 None:intergenic 45.0%
CTTCTCATCGAAGAGTAGAC+TGG + chr1.4:79802377-79802396 None:intergenic 45.0%
CTTCTTTGCATCTCTCTGCA+AGG - chr1.4:79803411-79803430 MS.gene070940:CDS 45.0%
GCCATCAGAGAATGAAGTTC+AGG - chr1.4:79803484-79803503 MS.gene070940:CDS 45.0%
GCCTGAACTTCATTCTCTGA+TGG + chr1.4:79803488-79803507 None:intergenic 45.0%
GCTTGCAAAACACAGCTTTG+TGG + chr1.4:79803308-79803327 None:intergenic 45.0%
GTTCACAGCCAAGCAATTCA+TGG + chr1.4:79802411-79802430 None:intergenic 45.0%
TACAGATCTGGAAGCTCACA+CGG - chr1.4:79804239-79804258 MS.gene070940:CDS 45.0%
TATTGTGAGTGCTTTGCTGC+TGG - chr1.4:79804165-79804184 MS.gene070940:CDS 45.0%
TGAGCTTCCAGATCTGTATC+AGG + chr1.4:79804237-79804256 None:intergenic 45.0%
TGCAGAGAGATGCAAAGAAG+AGG + chr1.4:79803411-79803430 None:intergenic 45.0%
TTGCTTGGCTGTGAACAAGA+CGG - chr1.4:79802415-79802434 MS.gene070940:CDS 45.0%
TTTGTGAAGGGACCAGTGAT+AGG + chr1.4:79803448-79803467 None:intergenic 45.0%
TTTGTGCATCACCCCCAAAA+AGG + chr1.4:79803918-79803937 None:intergenic 45.0%
! AGAAGGACAATGATAGCGCA+GGG - chr1.4:79803596-79803615 MS.gene070940:intron 45.0%
! AGAGTATCCCCCAAAGGAAA+AGG - chr1.4:79803690-79803709 MS.gene070940:intron 45.0%
! TATGTCAGAGTATCCCCCAA+AGG - chr1.4:79803684-79803703 MS.gene070940:intron 45.0%
!! GCTTTAGGAACAAATGCAGG+TGG + chr1.4:79804282-79804301 None:intergenic 45.0%
!! GTGTGTTTTCTAGGAAGCAC+GGG + chr1.4:79803278-79803297 None:intergenic 45.0%
AGGACTCAGTTGCAGGTGAA+AGG - chr1.4:79802446-79802465 MS.gene070940:CDS 50.0%
CTGAGATGACCAGTTCGCAA+AGG - chr1.4:79803177-79803196 MS.gene070940:CDS 50.0%
CTGAGCCGTCAAGTAATCCA+AGG + chr1.4:79802606-79802625 None:intergenic 50.0%
GACGGCTCAGAACCAATTGA+GGG - chr1.4:79802616-79802635 MS.gene070940:intron 50.0%
TCAAGGAAGGACTCAGTTGC+AGG - chr1.4:79802439-79802458 MS.gene070940:CDS 50.0%
TGAACAAGACGGCTCAAGGA+AGG - chr1.4:79802426-79802445 MS.gene070940:CDS 50.0%
TGACGGCTCAGAACCAATTG+AGG - chr1.4:79802615-79802634 MS.gene070940:intron 50.0%
TGCATCTCTCTGCAAGGCAA+GGG - chr1.4:79803417-79803436 MS.gene070940:CDS 50.0%
TTGCATCTCTCTGCAAGGCA+AGG - chr1.4:79803416-79803435 MS.gene070940:CDS 50.0%
! GAAGGACAATGATAGCGCAG+GGG - chr1.4:79803597-79803616 MS.gene070940:intron 50.0%
! GAGAAGGACAATGATAGCGC+AGG - chr1.4:79803595-79803614 MS.gene070940:intron 50.0%
! GTATTAGGCGCTGTGTAGAG+AGG - chr1.4:79803135-79803154 MS.gene070940:CDS 50.0%
GCTGTGAACAAGACGGCTCA+AGG - chr1.4:79802422-79802441 MS.gene070940:CDS 55.0%
!! GCAAGGGCATTGCCTATCAC+TGG - chr1.4:79803433-79803452 MS.gene070940:CDS 55.0%
GCTGCTGGAGTCTACTGCAC+AGG - chr1.4:79804180-79804199 MS.gene070940:CDS 60.0%
! TCGGTCGGAGTACCCCGAAA+AGG - chr1.4:79803519-79803538 MS.gene070940:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 79802340 79804347 79802340 ID=MS.gene070940
chr1.4 mRNA 79802340 79804347 79802340 ID=MS.gene070940.t1;Parent=MS.gene070940
chr1.4 exon 79803955 79804347 79803955 ID=MS.gene070940.t1.exon1;Parent=MS.gene070940.t1
chr1.4 CDS 79803955 79804347 79803955 ID=cds.MS.gene070940.t1;Parent=MS.gene070940.t1
chr1.4 exon 79802972 79803559 79802972 ID=MS.gene070940.t1.exon2;Parent=MS.gene070940.t1
chr1.4 CDS 79802972 79803559 79802972 ID=cds.MS.gene070940.t1;Parent=MS.gene070940.t1
chr1.4 exon 79802792 79802844 79802792 ID=MS.gene070940.t1.exon3;Parent=MS.gene070940.t1
chr1.4 CDS 79802792 79802844 79802792 ID=cds.MS.gene070940.t1;Parent=MS.gene070940.t1
chr1.4 exon 79802340 79802523 79802340 ID=MS.gene070940.t1.exon4;Parent=MS.gene070940.t1
chr1.4 CDS 79802340 79802523 79802340 ID=cds.MS.gene070940.t1;Parent=MS.gene070940.t1
Gene Sequence

>MS.gene070940

ATGCAGGATGATTATTTGTTTCACCTCCTTATCACCAGTCTACTCTTCGATGAGAAGTTTGTCGATATCCATGAATTGCTTGGCTGTGAACAAGACGGCTCAAGGAAGGACTCAGTTGCAGGTGAAAGGAAACCTGAAGTTTTGTCTCAGGATATAAATAATATTAATTCACATGAAGAAGCTCCAACAGATTCAACTCATGCATGGATTGACACAAGTGAGCTACCTGATCCTCAAATCTCAATTGATGAAATTAACTATGTCCTTGGATTACTTGACGGCTCAGAACCAATTGAGGGTGCAACAAATATTCGGGAAGATAATCAAACACGGGACAATCTTGCCCATGTTGCTTTAATGGATAACAACCCATTTCAGAGAGTGGATGATGAGGTCAGAAAATCAAATCTATTTTAGTTACAGTCAATTTTGTGCATAACTTATCATGCATGTTTGTAAATTATTTATCAGTTATCATACATACTATCTTTTGTCTAGTTGTGTCTTCATCTTCTTCATGTGTTTTTTATGTCCATTAGGATTGTTTAATCCATTCACAAGTTTGAATAAACTGGTGAAGTTGTATTATATATTGATCCTTCTGCATATTTATATGACCATATGCTTTAGAATTGCAATTCAATATTGTTGTTGGTACGTATTTGCTTCGTCAATATTGTCATATACTCAATCTTTACTTTGAAAGTACAGTCAATCTTTTATTTCTAATTGTGTCGATGTGTTGAACAAATCAATCATTGTAAACATACTTTTGTTTTTGTATATAGCTTGCACGTATTAGGCGCTGTGTAGAGAGGAGCTGTCAAGACTATGCGTCTGAGATGACCAGTTCGCAAAGGAACAACTATGCTTCTACTTCAAACATCAGTTCCCGTACAACAGAATCTGACAAGAGGAATGCTTTCAATGAAAAGCCCGTGCTTCCTAGAAAACACACTAGTGATCCACAAAGCTGTGTTTTGCAAGCAAATGGTTCTTGCTTAAATCATTACAATGGCAAAGAAAACGAAAAGATGTCTTCTGGAAGAAAAACTGAATCGCAGAGCTCCTCTTCTTTGCATCTCTCTGCAAGGCAAGGGCATTGCCTATCACTGGTCCCTTCACAAATGGAAAGACAATTGGGGCCATCAGAGAATGAAGTTCAGGCTACAAAAGATTTCGGTCGGAGTACCCCGAAAAGGACAATGAAAGTGGAGTTCAAGAACATAACGAATCAACAGTTAAATCAAAACATGAGAAGGACAATGATAGCGCAGGGGAAACGTCCGATTGATCCATCTTCTTTTGGTTCAAATCATGAAAAGGAAGAGGAAAATACAGATTTATGTCAGAGTATCCCCCAAAGGAAAAGGAAAGTAGTTTCTGATTATCGATTCCACTGCTTGATAATCTTTATTCCATTATTATATGTTAGTTTTTAACTTTCTTCATTAACCTAACACCAAACATTGATTTTGCAGGCACAAGTCAAATCTAACTAAGAAACAAAGGGCATGCAGAAGCTGTCGCTGTAAGAAATCGAAGTGTAAGCAACTGTAAGTTCTAAAACTTGCACCTTTTTGGGGGTGATGCACAAAGATAAAGCTACTATTATAAGTTGTGAATTACCATAATTTATATTGTTTTCTTAGTAAGCTGGTTTTTAAACTGACTTCAAGGTTTATTTTGAAGAAAAAAAAATTCAGCATACCTTAAATATAAAATTACTTTCATCGAGTAGGTTCTATATGGGACACTAGTTGTAATCTTATCAATTTCCTTTAATAGTATGCAATTAAACTTTTTTTTTCCTTTATTTTTCAGTTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCACAGGACCTTGCAGATGTAAAAACTGCGAAAATAAACCTGATACAGATCTGGAAGCTCACACGGAGATTGAGTCGTGCAAACCACCTGCATTTGTTCCTAAAGCTGTACAAATTTCTGATTCGTCTCCTCAAATTGAGCTCAAAAAATAA
Protein sequence

>MS.gene070940.t1

MQDDYLFHLLITSLLFDEKFVDIHELLGCEQDGSRKDSVAGERKPEVLSQDINNINSHEEAPTDSTHAWIDTSELPDPQISIDEINYVLGLLDGSEPIEGATNIREDNQTRDNLAHVALMDNNPFQRVDDELARIRRCVERSCQDYASEMTSSQRNNYASTSNISSRTTESDKRNAFNEKPVLPRKHTSDPQSCVLQANGSCLNHYNGKENEKMSSGRKTESQSSSSLHLSARQGHCLSLVPSQMERQLGPSENEVQATKDFGRSTPKRTMKVEFKNITNQQLNQNMRRTMIAQGKRPIDPSSFGSNHEKEEENTDLCQSIPQRKRKKQRACRSCRCKKSKCKQLYCECFAAGVYCTGPCRCKNCENKPDTDLEAHTEIESCKPPAFVPKAVQISDSSPQIELKK