AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070958

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070958.t1 MTR_1g102860 93.939 330 16 1 1 326 1 330 0.0 635
MS.gene070958.t1 MTR_7g095680 52.976 336 127 6 17 323 26 359 4.07e-108 319
MS.gene070958.t1 MTR_3g104550 63.426 216 72 4 27 240 33 243 2.75e-91 277
MS.gene070958.t1 MTR_5g029680 58.744 223 80 4 27 239 19 239 4.33e-82 257
MS.gene070958.t1 MTR_1g071360 58.667 225 80 4 23 245 15 228 2.68e-75 235
MS.gene070958.t1 MTR_1g071360 58.667 225 80 4 23 245 12 225 4.92e-75 235
MS.gene070958.t1 MTR_4g077970 56.667 210 80 4 39 240 11 217 7.51e-72 231
MS.gene070958.t1 MTR_1g061170 52.315 216 99 3 27 242 36 247 1.16e-69 224
MS.gene070958.t1 MTR_8g087540 38.062 289 159 5 39 318 11 288 1.69e-56 188
MS.gene070958.t1 MTR_8g105780 50.500 200 85 6 40 227 22 219 1.57e-52 177
MS.gene070958.t1 MTR_6g086805 43.627 204 108 3 40 243 11 207 7.52e-52 174
MS.gene070958.t1 MTR_2g100670 44.737 190 96 2 34 220 27 210 2.11e-51 172
MS.gene070958.t1 MTR_2g100670 44.737 190 96 2 34 220 135 318 2.40e-50 172
MS.gene070958.t1 MTR_6g043060 42.478 226 115 5 40 262 22 235 7.49e-50 169
MS.gene070958.t1 MTR_2g100680 40.271 221 118 4 25 240 14 225 1.60e-49 171
MS.gene070958.t1 MTR_8g083100 45.545 202 98 5 41 239 23 215 1.98e-48 169
MS.gene070958.t1 MTR_2g017890 41.270 189 105 2 31 214 6 193 2.17e-42 150
MS.gene070958.t1 MTR_3g101870 65.049 103 36 0 34 136 18 120 3.67e-41 147
MS.gene070958.t1 MTR_5g089170 71.579 95 27 0 38 132 23 117 1.05e-40 143
MS.gene070958.t1 MTR_5g010680 64.894 94 33 0 38 131 22 115 1.08e-37 138
MS.gene070958.t1 MTR_0020s0020 62.766 94 35 0 38 131 31 124 3.76e-37 136
MS.gene070958.t1 MTR_1g100777 62.766 94 35 0 38 131 16 109 4.13e-37 135
MS.gene070958.t1 MTR_7g091370 52.941 119 49 2 31 142 9 127 1.16e-35 129
MS.gene070958.t1 MTR_5g017470 60.417 96 38 0 37 132 6 101 5.66e-35 129
MS.gene070958.t1 MTR_4g088900 42.331 163 85 3 38 193 31 191 1.49e-32 120
MS.gene070958.t1 MTR_1g061170 45.185 135 72 2 97 231 11 143 9.33e-31 119
MS.gene070958.t1 MTR_4g045757 61.194 67 26 0 31 97 5 71 7.59e-21 85.5
MS.gene070958.t1 MTR_2g043940 34.266 143 73 5 80 214 11 140 1.16e-14 74.3
MS.gene070958.t1 MTR_5g047190 41.304 92 47 2 48 132 1 92 1.20e-14 69.3
MS.gene070958.t1 MTR_6g044340 28.846 156 100 4 92 244 14 161 3.76e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070958.t1 AT3G22830 52.078 361 113 6 22 323 43 402 1.72e-118 347
MS.gene070958.t1 AT2G26150 43.519 324 148 6 27 324 31 345 4.34e-86 263
MS.gene070958.t1 AT2G26150 43.519 324 148 6 27 324 31 345 4.34e-86 263
MS.gene070958.t1 AT3G51910 57.820 211 74 3 31 240 20 216 1.83e-81 248
MS.gene070958.t1 AT4G17750 53.414 249 90 6 16 240 22 268 6.09e-78 246
MS.gene070958.t1 AT5G16820 58.065 217 82 3 36 244 23 238 1.32e-76 243
MS.gene070958.t1 AT5G16820 58.065 217 82 3 36 244 23 238 1.32e-76 243
MS.gene070958.t1 AT1G32330 53.750 240 94 4 16 239 11 249 3.28e-76 242
MS.gene070958.t1 AT1G32330 53.750 240 94 4 16 239 11 249 3.82e-76 241
MS.gene070958.t1 AT5G43840 57.732 194 69 1 27 220 6 186 3.63e-75 233
MS.gene070958.t1 AT3G02990 56.604 212 85 2 39 244 22 232 2.43e-73 234
MS.gene070958.t1 AT3G63350 51.339 224 90 3 18 233 6 218 3.70e-73 228
MS.gene070958.t1 AT5G03720 41.091 275 161 1 14 288 29 302 2.30e-64 209
MS.gene070958.t1 AT5G03720 41.091 275 161 1 14 288 29 302 2.30e-64 209
MS.gene070958.t1 AT1G67970 48.837 215 101 5 40 248 19 230 4.08e-58 192
MS.gene070958.t1 AT3G24520 44.059 202 91 3 40 241 17 196 7.64e-51 172
MS.gene070958.t1 AT4G13980 43.350 203 102 3 41 239 24 217 3.76e-49 171
MS.gene070958.t1 AT5G54070 40.708 226 122 4 33 254 63 280 6.12e-48 164
MS.gene070958.t1 AT2G41690 39.216 204 107 4 13 209 23 216 2.18e-41 144
MS.gene070958.t1 AT4G18880 44.792 192 102 2 32 220 7 197 4.96e-41 147
MS.gene070958.t1 AT1G46264 64.423 104 37 0 31 134 25 128 8.29e-41 146
MS.gene070958.t1 AT5G45710 41.624 197 110 3 39 232 12 206 1.10e-40 145
MS.gene070958.t1 AT5G45710 41.624 197 110 3 39 232 12 206 1.10e-40 145
MS.gene070958.t1 AT2G26150 35.458 251 127 6 100 324 49 290 8.56e-39 139
MS.gene070958.t1 AT2G26150 35.458 251 127 6 100 324 49 290 8.56e-39 139
MS.gene070958.t1 AT4G11660 60.825 97 38 0 38 134 57 153 8.42e-38 139
MS.gene070958.t1 AT4G36990 54.464 112 47 1 38 149 12 119 4.06e-36 132
MS.gene070958.t1 AT5G62020 61.702 94 36 0 38 131 21 114 1.27e-35 131
MS.gene070958.t1 AT4G18870 37.097 124 75 1 29 149 135 258 6.43e-21 91.3
MS.gene070958.t1 AT4G18870 48.315 89 41 2 41 127 14 99 1.11e-19 87.8
MS.gene070958.t1 AT4G19630 39.623 106 52 4 36 131 7 110 1.77e-13 67.0
MS.gene070958.t1 AT1G77570 37.778 90 53 2 41 127 27 116 4.74e-12 63.5

Find 68 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCAAAGCTTCCTATTT+AGG 0.148117 1.4:+79551430 None:intergenic
ACTAACTGTTGCAAGAAATT+AGG 0.251206 1.4:+79551763 None:intergenic
GGAACAATAGCTTTGTTGTT+TGG 0.274853 1.4:-79552947 MS.gene070958:CDS
TAAGAGATATTGAAGTGTTT+TGG 0.285980 1.4:-79551546 MS.gene070958:CDS
TAAATTGTAGGGGTTTAAAA+AGG 0.303820 1.4:-79552115 MS.gene070958:intron
TTCAAGTTGATTAATTTGAT+TGG 0.327468 1.4:+79551570 None:intergenic
GTTGATGCAGATGTTGAATT+AGG 0.327469 1.4:-79551658 MS.gene070958:CDS
GAACAATAGCTTTGTTGTTT+GGG 0.327590 1.4:-79552946 MS.gene070958:CDS
CCACAAATCATATAGTTTCA+TGG 0.352549 1.4:-79552977 MS.gene070958:CDS
TGCCTCTAGTCCTCCTAAAT+AGG 0.370362 1.4:-79551443 None:intergenic
ATTAAGTTGCCGGACAAAAC+TGG 0.370804 1.4:+79552866 None:intergenic
CTTGTCTGTCGCGCCTCAAC+CGG 0.383841 1.4:+79551926 None:intergenic
TTGTTGTGCTTGAAGAATCT+AGG 0.383883 1.4:+79552894 None:intergenic
TGTGTTGAGCTGGGAAGGTT+TGG 0.384498 1.4:-79551970 MS.gene070958:CDS
CATATAGTTTCATGGAGTAC+TGG 0.392040 1.4:-79552969 MS.gene070958:CDS
AAAACAGATGATGAATTTCA+TGG 0.398561 1.4:-79551803 MS.gene070958:CDS
GGAATGGAGAAAAGAGTTAG+AGG 0.408095 1.4:-79551731 MS.gene070958:CDS
TTCTTCTAATGTTCTTCAAA+AGG 0.412252 1.4:+79552037 None:intergenic
CCATGAAACTATATGATTTG+TGG 0.413159 1.4:+79552977 None:intergenic
AGGGAAGGACTTCATGAAAA+TGG 0.418874 1.4:-79553047 MS.gene070958:CDS
TCACATAGGTATTAAGTTGC+CGG 0.435323 1.4:+79552856 None:intergenic
TGAAGTCCTTCCCTTGGTTG+AGG 0.441996 1.4:+79553056 None:intergenic
ACATCTGCATCAACATTACT+AGG 0.447700 1.4:+79551667 None:intergenic
TATTGAAGATGTTGATGTAT+TGG 0.457804 1.4:-79551485 MS.gene070958:CDS
GCTAATGAGATGTTTCTAAG+AGG 0.461550 1.4:-79552069 MS.gene070958:CDS
GGGATGAAGGAGGAGTTTGT+TGG 0.463474 1.4:-79553110 MS.gene070958:CDS
TTGGCAAAATTTGTTTAAGG+AGG 0.466444 1.4:-79551527 MS.gene070958:CDS
ATCTTGAAGCAATGGAAAGA+AGG 0.466935 1.4:-79551849 MS.gene070958:CDS
GAATCGAAGTGGACCGGTTG+AGG 0.470687 1.4:-79551939 MS.gene070958:CDS
ATGAATATGAATCTTCATCA+TGG 0.483530 1.4:-79553134 MS.gene070958:CDS
CGTCATGTGTTGAGCTGGGA+AGG 0.490133 1.4:-79551975 MS.gene070958:CDS
GCGCGACAGACAAGTTCTAA+TGG 0.493467 1.4:-79551917 MS.gene070958:CDS
AAAGGTTGATGCAGATAGGT+GGG 0.494489 1.4:-79552097 MS.gene070958:CDS
AGACCCGTCATGTGTTGAGC+TGG 0.495058 1.4:-79551980 MS.gene070958:CDS
ATGAAGGAGGAGTTTGTTGG+AGG 0.495698 1.4:-79553107 MS.gene070958:CDS
AGTTAGTTCAGCAGAAGGAA+TGG 0.496467 1.4:-79551747 MS.gene070958:CDS
AGAAGGAGAACTATTGATGA+AGG 0.503305 1.4:-79551691 MS.gene070958:CDS
AGGTTCACCAACCACAGAAA+AGG 0.504219 1.4:+79553076 None:intergenic
AGGGAGAAGAATAATAGAAA+AGG 0.505225 1.4:+79552914 None:intergenic
TGTTGTGCTTGAAGAATCTA+GGG 0.511168 1.4:+79552895 None:intergenic
TCTTCATCATGGTGGGATGA+AGG 0.511768 1.4:-79553123 MS.gene070958:CDS
TGGCAAAATTTGTTTAAGGA+GGG 0.516361 1.4:-79551526 MS.gene070958:CDS
ATCAAAGCTTCCTATTTAGG+AGG 0.518160 1.4:+79551433 None:intergenic
ACAAGTTCTAATGGTTGAGT+TGG 0.523658 1.4:-79551908 MS.gene070958:CDS
CTGGGAAGGTTTGGATTAGA+CGG 0.525469 1.4:-79551961 MS.gene070958:CDS
TAGAACTCATCTTGAAGCAA+TGG 0.536822 1.4:-79551857 MS.gene070958:CDS
AAAAGGTTGATGCAGATAGG+TGG 0.546223 1.4:-79552098 MS.gene070958:CDS
TTCCCAGCTCAACACATGAC+GGG 0.552361 1.4:+79551977 None:intergenic
GATGATGAATTTCATGGCAA+GGG 0.556515 1.4:-79551797 MS.gene070958:CDS
ATATAGTTTCATGGAGTACT+GGG 0.559738 1.4:-79552968 MS.gene070958:CDS
GACCCGTCATGTGTTGAGCT+GGG 0.564277 1.4:-79551979 MS.gene070958:CDS
TTCCTATTTAGGAGGACTAG+AGG 0.567154 1.4:+79551441 None:intergenic
AGATGATGAATTTCATGGCA+AGG 0.575521 1.4:-79551798 MS.gene070958:CDS
CTTCCCAGCTCAACACATGA+CGG 0.580827 1.4:+79551976 None:intergenic
GCAACAGTTAGTTCAGCAGA+AGG 0.585939 1.4:-79551752 MS.gene070958:CDS
TGAACAACATCAAGATGTTG+AGG 0.592174 1.4:-79551599 MS.gene070958:CDS
AGAATAATAGAAAAGGCTTG+AGG 0.598445 1.4:+79552921 None:intergenic
TGGATTAGACGGAATCGAAG+TGG 0.602364 1.4:-79551950 MS.gene070958:CDS
GATGTATTGGCTGAGCAACT+TGG 0.605475 1.4:-79551472 MS.gene070958:CDS
AATATGAATCTTCATCATGG+TGG 0.612258 1.4:-79553131 MS.gene070958:CDS
TAGACGGAATCGAAGTGGAC+CGG 0.614296 1.4:-79551945 MS.gene070958:CDS
GAAGGAGAACTATTGATGAA+GGG 0.618906 1.4:-79551690 MS.gene070958:CDS
GAAACTATATGATTTGTGGA+AGG 0.623337 1.4:+79552981 None:intergenic
ATATGAATCTTCATCATGGT+GGG 0.643772 1.4:-79553130 MS.gene070958:CDS
TCATCATGGTGGGATGAAGG+AGG 0.650270 1.4:-79553120 MS.gene070958:CDS
GGTGAACCTCAACCAAGGGA+AGG 0.659511 1.4:-79553062 MS.gene070958:CDS
TGGTTGGTGAACCTCAACCA+AGG 0.664718 1.4:-79553067 MS.gene070958:CDS
GGTTGGTGAACCTCAACCAA+GGG 0.679182 1.4:-79553066 MS.gene070958:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTGAAATTAAATTGTA+GGG - chr1.4:79552452-79552471 MS.gene070958:intron 10.0%
!!! AACATTTTTGTTTCATTATA+TGG - chr1.4:79551876-79551895 MS.gene070958:CDS 15.0%
!!! AATTTGAAATTAAATTGTAG+GGG - chr1.4:79552453-79552472 MS.gene070958:intron 15.0%
!!! GAAATTTGAAATTAAATTGT+AGG - chr1.4:79552451-79552470 MS.gene070958:intron 15.0%
!! AAACAAACACTAATTAACAT+TGG + chr1.4:79552385-79552404 None:intergenic 20.0%
!! AGTTGAAATATAAAAGTCTT+AGG - chr1.4:79551944-79551963 MS.gene070958:CDS 20.0%
!!! AAATTTTTTCTAAGAAGAGA+AGG - chr1.4:79552870-79552889 MS.gene070958:CDS 20.0%
!!! CTATATCATATGTTTTTGTT+AGG + chr1.4:79551569-79551588 None:intergenic 20.0%
!!! TTCAAGTTGATTAATTTGAT+TGG + chr1.4:79553011-79553030 None:intergenic 20.0%
!!! TTTGACTTTTCTCTATATTA+GGG + chr1.4:79552072-79552091 None:intergenic 20.0%
!!! TTTTGACTTTTCTCTATATT+AGG + chr1.4:79552073-79552092 None:intergenic 20.0%
! AAAACAGATGATGAATTTCA+TGG - chr1.4:79552775-79552794 MS.gene070958:intron 25.0%
! AAAAGTCAAAATGTATTGGA+CGG - chr1.4:79552082-79552101 MS.gene070958:CDS 25.0%
! AGAGAAAAGTCAAAATGTAT+TGG - chr1.4:79552078-79552097 MS.gene070958:CDS 25.0%
! ATGAATATGAATCTTCATCA+TGG - chr1.4:79551444-79551463 MS.gene070958:CDS 25.0%
! TAAATTGTAGGGGTTTAAAA+AGG - chr1.4:79552463-79552482 MS.gene070958:intron 25.0%
! TATCTCATCAGATTAAACAA+AGG + chr1.4:79551807-79551826 None:intergenic 25.0%
! TATTGAAGATGTTGATGTAT+TGG - chr1.4:79553093-79553112 MS.gene070958:CDS 25.0%
! TTAAATACTACTACTCACAT+AGG + chr1.4:79551739-79551758 None:intergenic 25.0%
! TTATATTTCAACTGCAATTG+AGG + chr1.4:79551937-79551956 None:intergenic 25.0%
! TTCTTCTAATGTTCTTCAAA+AGG + chr1.4:79552544-79552563 None:intergenic 25.0%
! TTGTTTAATCTGATGAGATA+AGG - chr1.4:79551807-79551826 MS.gene070958:CDS 25.0%
!! GTTTTCATTGAATGGAATTA+TGG - chr1.4:79552401-79552420 MS.gene070958:intron 25.0%
!!! AAAAGTCTTAGGCTATTTTT+GGG - chr1.4:79551955-79551974 MS.gene070958:CDS 25.0%
!!! ATTGTGTGAGTTATTTTTCT+TGG - chr1.4:79552033-79552052 MS.gene070958:CDS 25.0%
!!! GCATTTTGATTTGAAAATGA+AGG - chr1.4:79552427-79552446 MS.gene070958:intron 25.0%
!!! GTTTTGGCAAAATTTGTTTA+AGG - chr1.4:79553048-79553067 MS.gene070958:CDS 25.0%
!!! TAAAAGTCTTAGGCTATTTT+TGG - chr1.4:79551954-79551973 MS.gene070958:CDS 25.0%
!!! TAAGAGATATTGAAGTGTTT+TGG - chr1.4:79553032-79553051 MS.gene070958:CDS 25.0%
!!! TAGTGTTTGTTTTCATTGAA+TGG - chr1.4:79552393-79552412 MS.gene070958:intron 25.0%
!!! TCATATGTTTTTGTTAGGAA+TGG + chr1.4:79551564-79551583 None:intergenic 25.0%
AAAGTCAAAATGTATTGGAC+GGG - chr1.4:79552083-79552102 MS.gene070958:CDS 30.0%
AATATGAATCTTCATCATGG+TGG - chr1.4:79551447-79551466 MS.gene070958:CDS 30.0%
ACTAACTGTTGCAAGAAATT+AGG + chr1.4:79552818-79552837 None:intergenic 30.0%
AGAATAATAGAAAAGGCTTG+AGG + chr1.4:79551660-79551679 None:intergenic 30.0%
AGGGAGAAGAATAATAGAAA+AGG + chr1.4:79551667-79551686 None:intergenic 30.0%
ATATGAATCTTCATCATGGT+GGG - chr1.4:79551448-79551467 MS.gene070958:CDS 30.0%
ATTGTCTCTTATGATGAGAA+GGG + chr1.4:79551839-79551858 None:intergenic 30.0%
CCACAAATCATATAGTTTCA+TGG - chr1.4:79551601-79551620 MS.gene070958:CDS 30.0%
CCATGAAACTATATGATTTG+TGG + chr1.4:79551604-79551623 None:intergenic 30.0%
TATTGTCTCTTATGATGAGA+AGG + chr1.4:79551840-79551859 None:intergenic 30.0%
! ATATAGTTTCATGGAGTACT+GGG - chr1.4:79551610-79551629 MS.gene070958:CDS 30.0%
! CTTTGGAAAGAAATGAATGA+AGG - chr1.4:79551994-79552013 MS.gene070958:CDS 30.0%
! GAAACTATATGATTTGTGGA+AGG + chr1.4:79551600-79551619 None:intergenic 30.0%
! TGGCAAAATTTGTTTAAGGA+GGG - chr1.4:79553052-79553071 MS.gene070958:CDS 30.0%
! TTGGCAAAATTTGTTTAAGG+AGG - chr1.4:79553051-79553070 MS.gene070958:CDS 30.0%
!! GAACAATAGCTTTGTTGTTT+GGG - chr1.4:79551632-79551651 MS.gene070958:CDS 30.0%
!! TATGTTTTTGTTAGGAATGG+TGG + chr1.4:79551561-79551580 None:intergenic 30.0%
!! TTAAAAAGGTTGATGCAGAT+AGG - chr1.4:79552477-79552496 MS.gene070958:intron 30.0%
AAACACGACAGTGATACATT+TGG - chr1.4:79552278-79552297 MS.gene070958:intron 35.0%
AAGTCAAAATGTATTGGACG+GGG - chr1.4:79552084-79552103 MS.gene070958:CDS 35.0%
ACATCTGCATCAACATTACT+AGG + chr1.4:79552914-79552933 None:intergenic 35.0%
AGAAGGAGAACTATTGATGA+AGG - chr1.4:79552887-79552906 MS.gene070958:CDS 35.0%
AGATGATGAATTTCATGGCA+AGG - chr1.4:79552780-79552799 MS.gene070958:intron 35.0%
ATCTTGAAGCAATGGAAAGA+AGG - chr1.4:79552729-79552748 MS.gene070958:intron 35.0%
CATATAGTTTCATGGAGTAC+TGG - chr1.4:79551609-79551628 MS.gene070958:CDS 35.0%
GAAGGAGAACTATTGATGAA+GGG - chr1.4:79552888-79552907 MS.gene070958:CDS 35.0%
GAGTTAGGAATGAATGACTT+TGG - chr1.4:79551977-79551996 MS.gene070958:CDS 35.0%
GATGATGAATTTCATGGCAA+GGG - chr1.4:79552781-79552800 MS.gene070958:intron 35.0%
GTAGATAATATGACATCACG+AGG - chr1.4:79552199-79552218 MS.gene070958:intron 35.0%
GTTGATGCAGATGTTGAATT+AGG - chr1.4:79552920-79552939 MS.gene070958:CDS 35.0%
TAACATTGGCATAGACATAG+AGG + chr1.4:79552371-79552390 None:intergenic 35.0%
TAGAACTCATCTTGAAGCAA+TGG - chr1.4:79552721-79552740 MS.gene070958:intron 35.0%
TGAACAACATCAAGATGTTG+AGG - chr1.4:79552979-79552998 MS.gene070958:CDS 35.0%
TGTTGTGCTTGAAGAATCTA+GGG + chr1.4:79551686-79551705 None:intergenic 35.0%
TTGTTGTGCTTGAAGAATCT+AGG + chr1.4:79551687-79551706 None:intergenic 35.0%
! ACAAGTTCTAATGGTTGAGT+TGG - chr1.4:79552670-79552689 MS.gene070958:intron 35.0%
! GCTAATGAGATGTTTCTAAG+AGG - chr1.4:79552509-79552528 MS.gene070958:intron 35.0%
! TCACATAGGTATTAAGTTGC+CGG + chr1.4:79551725-79551744 None:intergenic 35.0%
!! ACAATTTCTCCAGTTTTGTC+CGG - chr1.4:79551703-79551722 MS.gene070958:CDS 35.0%
!! GGAACAATAGCTTTGTTGTT+TGG - chr1.4:79551631-79551650 MS.gene070958:CDS 35.0%
!!! TTAGGCTATTTTTGGGAGTT+AGG - chr1.4:79551962-79551981 MS.gene070958:CDS 35.0%
AGGGAAGGACTTCATGAAAA+TGG - chr1.4:79551531-79551550 MS.gene070958:CDS 40.0%
AGTTAGTTCAGCAGAAGGAA+TGG - chr1.4:79552831-79552850 MS.gene070958:intron 40.0%
GGAATGGAGAAAAGAGTTAG+AGG - chr1.4:79552847-79552866 MS.gene070958:intron 40.0%
! AGGAAGTTCTTCCTTTTCTG+TGG - chr1.4:79551491-79551510 MS.gene070958:CDS 40.0%
! AGTTCTTCCTTTTCTGTGGT+TGG - chr1.4:79551495-79551514 MS.gene070958:CDS 40.0%
! ATTAAGTTGCCGGACAAAAC+TGG + chr1.4:79551715-79551734 None:intergenic 40.0%
! GTTTTTGTTAGGAATGGTGG+AGG + chr1.4:79551558-79551577 None:intergenic 40.0%
! TTTTCATGAAGTCCTTCCCT+TGG + chr1.4:79551531-79551550 None:intergenic 40.0%
!! AAAAGGTTGATGCAGATAGG+TGG - chr1.4:79552480-79552499 MS.gene070958:intron 40.0%
!! AAAGGTTGATGCAGATAGGT+GGG - chr1.4:79552481-79552500 MS.gene070958:intron 40.0%
AGGTTCACCAACCACAGAAA+AGG + chr1.4:79551505-79551524 None:intergenic 45.0%
GCAACAGTTAGTTCAGCAGA+AGG - chr1.4:79552826-79552845 MS.gene070958:intron 45.0%
! CTGGGAAGGTTTGGATTAGA+CGG - chr1.4:79552617-79552636 MS.gene070958:intron 45.0%
! TCTTCATCATGGTGGGATGA+AGG - chr1.4:79551455-79551474 MS.gene070958:CDS 45.0%
! TGGATTAGACGGAATCGAAG+TGG - chr1.4:79552628-79552647 MS.gene070958:intron 45.0%
!! ATGAAGGAGGAGTTTGTTGG+AGG - chr1.4:79551471-79551490 MS.gene070958:CDS 45.0%
!! GATGTATTGGCTGAGCAACT+TGG - chr1.4:79553106-79553125 MS.gene070958:CDS 45.0%
CTTCCCAGCTCAACACATGA+CGG + chr1.4:79552605-79552624 None:intergenic 50.0%
GGGATGAAGGAGGAGTTTGT+TGG - chr1.4:79551468-79551487 MS.gene070958:CDS 50.0%
TAGACGGAATCGAAGTGGAC+CGG - chr1.4:79552633-79552652 MS.gene070958:intron 50.0%
TGAAGTCCTTCCCTTGGTTG+AGG + chr1.4:79551525-79551544 None:intergenic 50.0%
TGTGTTGAGCTGGGAAGGTT+TGG - chr1.4:79552608-79552627 MS.gene070958:intron 50.0%
TTCCCAGCTCAACACATGAC+GGG + chr1.4:79552604-79552623 None:intergenic 50.0%
! GCGCGACAGACAAGTTCTAA+TGG - chr1.4:79552661-79552680 MS.gene070958:intron 50.0%
! TCATCATGGTGGGATGAAGG+AGG - chr1.4:79551458-79551477 MS.gene070958:CDS 50.0%
!! GGTTGGTGAACCTCAACCAA+GGG - chr1.4:79551512-79551531 MS.gene070958:CDS 50.0%
!! TGGTTGGTGAACCTCAACCA+AGG - chr1.4:79551511-79551530 MS.gene070958:CDS 50.0%
AGACCCGTCATGTGTTGAGC+TGG - chr1.4:79552598-79552617 MS.gene070958:intron 55.0%
CGTCATGTGTTGAGCTGGGA+AGG - chr1.4:79552603-79552622 MS.gene070958:intron 55.0%
GAATCGAAGTGGACCGGTTG+AGG - chr1.4:79552639-79552658 MS.gene070958:intron 55.0%
GACCCGTCATGTGTTGAGCT+GGG - chr1.4:79552599-79552618 MS.gene070958:intron 55.0%
GGTGAACCTCAACCAAGGGA+AGG - chr1.4:79551516-79551535 MS.gene070958:CDS 55.0%
CTTGTCTGTCGCGCCTCAAC+CGG + chr1.4:79552655-79552674 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 79551444 79553156 79551444 ID=MS.gene070958
chr1.4 mRNA 79551444 79553156 79551444 ID=MS.gene070958.t1;Parent=MS.gene070958
chr1.4 exon 79552860 79553156 79552860 ID=MS.gene070958.t1.exon1;Parent=MS.gene070958.t1
chr1.4 CDS 79552860 79553156 79552860 ID=cds.MS.gene070958.t1;Parent=MS.gene070958.t1
chr1.4 exon 79551444 79552127 79551444 ID=MS.gene070958.t1.exon2;Parent=MS.gene070958.t1
chr1.4 CDS 79551444 79552127 79551444 ID=cds.MS.gene070958.t1;Parent=MS.gene070958.t1
Gene Sequence

>MS.gene070958

ATGAATATGAATCTTCATCATGGTGGGATGAAGGAGGAGTTTGTTGGAGGAAGTTCTTCCTTTTCTGTGGTTGGTGAACCTCAACCAAGGGAAGGACTTCATGAAAATGGTCCTCCACCATTCCTAACAAAAACATATGATATAGTTGATGATCCTTCCACAAATCATATAGTTTCATGGAGTACTGGGAACAATAGCTTTGTTGTTTGGGATCCTCAAGCCTTTTCTATTATTCTTCTCCCTAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCCGGCAACTTAATACCTATGTGAGTAGTAGTATTTAATTTCAACTCTCTACTCAAGTACTGATGATATATATGTTTTTTTTTCCTTTGTTTAATCTGATGAGATAAGGCAACGTCCCTTCTCATCATAAGAGACAATATATGACATCACTAGAGAACATTTTTGTTTCATTATATGGAATAATGTAGTAATAAATTAAATTGCATTTTGCAACCTCAATTGCAGTTGAAATATAAAAGTCTTAGGCTATTTTTGGGAGTTAGGAATGAATGACTTTGGAAAGAAATGAATGAAGGACAATCATCTAGCTTGATTGTGTGAGTTATTTTTCTTGGTAATACAAAATTTCCCTAATATAGAGAAAAGTCAAAATGTATTGGACGGGGATTTTAGAGAATTTCAATAAATTCTTCGAATCATTTTAATGTTTAAATTATACTCTCAAAATTAGCACAGACAAACATCTATATAACAAGTTGTAGATAATATGACATCACGAGGAAACATTTTTGTTCGTCTCTAATGATCGAGAACATGTCTAGTATGTGACACGTTTCAAACACGACAGTGATACATTTGGTTCTATTCAATTAATTCTATTTTATTTAAAATTATTAATGATGTTTATGTGTGAGTGTCATGTCATACCTCTATGTCTATGCCAATGTTAATTAGTGTTTGTTTTCATTGAATGGAATTATGGATTGCATTTTGATTTGAAAATGAAGGAGAAATTTGAAATTAAATTGTAGGGGTTTAAAAAGGTTGATGCAGATAGGTGGGAATTTGCTAATGAGATGTTTCTAAGAGGACAAAAAATCCTTTTGAAGAACATTAGAAGAAGAAAAACAAATCAATCTCAAGTAATGCAAGCACTAGACCCGTCATGTGTTGAGCTGGGAAGGTTTGGATTAGACGGAATCGAAGTGGACCGGTTGAGGCGCGACAGACAAGTTCTAATGGTTGAGTTGGTGAAACTTAGACAACAACAGCAGAATACTAGAACTCATCTTGAAGCAATGGAAAGAAGGCTTAAAAGAAGTGAACAGAAACAAAAACAGATGATGAATTTCATGGCAAGGGCAATACAAAAGCCTAATTTCTTGCAACAGTTAGTTCAGCAGAAGGAATGGAGAAAAGAGTTAGAGGAAATTTTTTCTAAGAAGAGAAGGAGAACTATTGATGAAGGGCCTAGTAATGTTGATGCAGATGTTGAATTAGGATATGTTGATAAAGATTGCTTAAATTTTGTCAAACTTGAACAACATCAAGATGTTGAGGAAAACTCCAATCAAATTAATCAACTTGAAGTAAGAGATATTGAAGTGTTTTGGCAAAATTTGTTTAAGGAGGGTATTGAAGATGAAATAGATATTGAAGATGTTGATGTATTGGCTGAGCAACTTGGTTATCTTGCCTCTAGTCCTCCTAAATAG
Protein sequence

>MS.gene070958.t1

MNMNLHHGGMKEEFVGGSSSFSVVGEPQPREGLHENGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSIILLPRFFKHNNFSSFVRQLNTYGFKKVDADRWEFANEMFLRGQKILLKNIRRRKTNQSQVMQALDPSCVELGRFGLDGIEVDRLRRDRQVLMVELVKLRQQQQNTRTHLEAMERRLKRSEQKQKQMMNFMARAIQKPNFLQQLVQQKEWRKELEEIFSKKRRRTIDEGPSNVDADVELGYVDKDCLNFVKLEQHQDVEENSNQINQLEVRDIEVFWQNLFKEGIEDEIDIEDVDVLAEQLGYLASSPPK