Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071109.t1 | RYR21771.1 | 59.8 | 905 | 255 | 9 | 90 | 930 | 3 | 862 | 2.40E-262 | 915.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071109.t1 | Q6H7U2 | 30.6 | 447 | 251 | 15 | 94 | 512 | 11 | 426 | 1.3e-33 | 146.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071109.t1 | A0A445A5N9 | 59.8 | 905 | 255 | 9 | 90 | 930 | 3 | 862 | 1.7e-262 | 915.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene071109.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071109.t1 | MTR_4g046697 | 95.842 | 457 | 17 | 2 | 71 | 527 | 7 | 461 | 0.0 | 896 |
| MS.gene071109.t1 | MTR_4g046697 | 96.145 | 441 | 15 | 2 | 87 | 527 | 1 | 439 | 0.0 | 871 |
| MS.gene071109.t1 | MTR_4g046697 | 95.980 | 398 | 14 | 2 | 130 | 527 | 19 | 414 | 0.0 | 775 |
| MS.gene071109.t1 | MTR_4g046707 | 96.389 | 360 | 11 | 2 | 571 | 930 | 1 | 358 | 0.0 | 712 |
| MS.gene071109.t1 | MTR_4g046697 | 97.414 | 348 | 9 | 0 | 87 | 434 | 1 | 348 | 0.0 | 698 |
| MS.gene071109.t1 | MTR_4g046697 | 97.377 | 305 | 8 | 0 | 130 | 434 | 19 | 323 | 0.0 | 604 |
| MS.gene071109.t1 | MTR_4g046697 | 94.366 | 284 | 14 | 2 | 244 | 527 | 34 | 315 | 0.0 | 541 |
| MS.gene071109.t1 | MTR_6g055230 | 48.443 | 289 | 108 | 3 | 641 | 925 | 46 | 297 | 4.14e-75 | 249 |
| MS.gene071109.t1 | MTR_4g046663 | 69.737 | 76 | 23 | 0 | 834 | 909 | 1 | 76 | 9.19e-31 | 116 |
| MS.gene071109.t1 | MTR_1g101540 | 29.258 | 229 | 141 | 5 | 670 | 879 | 93 | 319 | 8.65e-25 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071109.t1 | AT1G05270 | 58.777 | 376 | 134 | 4 | 571 | 930 | 1 | 371 | 2.08e-149 | 446 |
| MS.gene071109.t1 | AT2G32340 | 55.977 | 343 | 136 | 4 | 600 | 927 | 13 | 355 | 4.17e-125 | 383 |
| MS.gene071109.t1 | AT2G32340 | 57.678 | 267 | 98 | 4 | 600 | 851 | 13 | 279 | 5.94e-97 | 306 |
| MS.gene071109.t1 | AT3G21810 | 37.329 | 292 | 168 | 4 | 94 | 370 | 7 | 298 | 2.56e-43 | 164 |
| MS.gene071109.t1 | AT3G21810 | 36.287 | 237 | 148 | 1 | 137 | 370 | 38 | 274 | 3.23e-31 | 127 |
| MS.gene071109.t1 | AT5G52030 | 31.148 | 244 | 132 | 7 | 670 | 879 | 94 | 335 | 6.09e-21 | 97.1 |
| MS.gene071109.t1 | AT5G52030 | 34.965 | 143 | 87 | 4 | 741 | 879 | 51 | 191 | 9.75e-16 | 78.6 |
Find 222 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATGTTTGAAGTACTTTA+TGG | 0.122060 | 4.3:-51554323 | MS.gene071109:CDS |
| GATACTTCAATTCCATTATC+AGG | 0.154544 | 4.3:+51561595 | None:intergenic |
| TCCAATCACCAAACATAATT+TGG | 0.183533 | 4.3:-51562481 | MS.gene071109:CDS |
| AGTAAGCTTGAGGTCTTTCC+TGG | 0.209500 | 4.3:-51554139 | MS.gene071109:CDS |
| TAAAGAGTTTCCAACTTTAA+TGG | 0.223585 | 4.3:-51553060 | MS.gene071109:CDS |
| GTTCCTGAATTCTAGAATTA+AGG | 0.245226 | 4.3:+51562989 | None:intergenic |
| TCTGTAGGTGTTGGCGTGGC+TGG | 0.248845 | 4.3:-51552175 | MS.gene071109:CDS |
| GCGTGTTGTTGCTGAGAAAA+AGG | 0.251314 | 4.3:+51567532 | None:intergenic |
| TAGCCTTAATTCTAGAATTC+AGG | 0.264978 | 4.3:-51562992 | MS.gene071109:CDS |
| TGGTGTTTGTGATGTTTATT+TGG | 0.265438 | 4.3:-51558133 | MS.gene071109:CDS |
| TCGAATGCACAATCAGAAAT+TGG | 0.265489 | 4.3:-51562770 | MS.gene071109:CDS |
| AAGATAGATGCCAGATATTA+TGG | 0.279209 | 4.3:+51552147 | None:intergenic |
| GTAAGGTGTGGGTGCGGCGG+AGG | 0.297036 | 4.3:+51558445 | None:intergenic |
| TTCTCAGACATTTCTAGAAT+TGG | 0.297684 | 4.3:-51562564 | MS.gene071109:CDS |
| GCGGATCTCCTTGCAGAAAA+AGG | 0.300826 | 4.3:-51562449 | MS.gene071109:CDS |
| TGATAATGGAATGGCATTAC+AGG | 0.320982 | 4.3:-51561162 | MS.gene071109:CDS |
| AAGAGGATGGGGAGTATAAA+AGG | 0.327357 | 4.3:-51562948 | MS.gene071109:intron |
| GTCTTCAACGGCGGCGGCGG+GGG | 0.327633 | 4.3:+51558383 | None:intergenic |
| TTGCTGCGGGGAATCAAATC+TGG | 0.330633 | 4.3:+51561113 | None:intergenic |
| TACAAGGAATAAAGAAGAAT+TGG | 0.330803 | 4.3:-51552480 | MS.gene071109:CDS |
| TTGTTCAACTTACGGCAAAC+TGG | 0.337517 | 4.3:+51570119 | None:intergenic |
| CTGTAGGTGTTGGCGTGGCT+GGG | 0.344238 | 4.3:-51552174 | MS.gene071109:CDS |
| CATTGCAGAGATAGCTGGTT+TGG | 0.349792 | 4.3:+51552210 | None:intergenic |
| GGAGGGTTGTTGAGAAGAAT+TGG | 0.355194 | 4.3:+51558463 | None:intergenic |
| TGTGAGGAGGCCCCTGATAA+TGG | 0.359411 | 4.3:-51561607 | MS.gene071109:CDS |
| GCAGGAAAGAGAGACTATTT+AGG | 0.365279 | 4.3:-51564872 | MS.gene071109:intron |
| TTCTGTCCTTGAAGTTTCAT+TGG | 0.368375 | 4.3:+51561187 | None:intergenic |
| TAGAAATACTCTTGAGGATC+AGG | 0.371223 | 4.3:-51563539 | MS.gene071109:intron |
| TGAAAATTCACCATTATAGT+TGG | 0.375369 | 4.3:+51567345 | None:intergenic |
| GAAAACACAAGAAAGGAATA+TGG | 0.376155 | 4.3:-51561552 | MS.gene071109:CDS |
| ACTTTGGTACAAGACAAAAT+TGG | 0.377559 | 4.3:-51553292 | MS.gene071109:CDS |
| TCACATCCACGATCTCAAAA+TGG | 0.378158 | 4.3:-51558355 | MS.gene071109:CDS |
| GCTTACCCTTCAAAATCTTA+AGG | 0.379693 | 4.3:-51555337 | MS.gene071109:intron |
| GTTTGTGATGTTTATTTGGT+TGG | 0.379917 | 4.3:-51558129 | MS.gene071109:CDS |
| AGTGGCCAAAGTGATATTTC+TGG | 0.381454 | 4.3:-51563628 | MS.gene071109:CDS |
| GGTTGACGGCACTTCAATCC+TGG | 0.385159 | 4.3:+51561271 | None:intergenic |
| GAAGTCTTCAACGGCGGCGG+CGG | 0.385861 | 4.3:+51558380 | None:intergenic |
| GAACTTACTGATCTCGTTCA+TGG | 0.387801 | 4.3:+51553027 | None:intergenic |
| TCAAGGACAGAAAATGATAA+TGG | 0.388686 | 4.3:-51561176 | MS.gene071109:CDS |
| AAGTCTTCAACGGCGGCGGC+GGG | 0.389495 | 4.3:+51558381 | None:intergenic |
| TCAATCATTTCTCTCATAGT+AGG | 0.391823 | 4.3:+51554365 | None:intergenic |
| GGGGTGGTGGAGGAGGAATC+TGG | 0.395928 | 4.3:+51558402 | None:intergenic |
| AGGAAAGACCTCAAGCTTAC+TGG | 0.396406 | 4.3:+51554141 | None:intergenic |
| TCAATCATCCAGTCTGTTCA+TGG | 0.396743 | 4.3:-51569327 | MS.gene071109:CDS |
| AGTATCTAGGCACCAAGATC+TGG | 0.407157 | 4.3:-51561578 | MS.gene071109:CDS |
| TATGAAGAAGCAATCAAGTA+TGG | 0.408284 | 4.3:-51554097 | MS.gene071109:CDS |
| TCCAAATTATGTTTGGTGAT+TGG | 0.408302 | 4.3:+51562480 | None:intergenic |
| GAGGGTTGTTGAGAAGAATT+GGG | 0.408679 | 4.3:+51558464 | None:intergenic |
| GTGGTGGAGGAGGAATCTGG+TGG | 0.411485 | 4.3:+51558405 | None:intergenic |
| GCTGGGGTTGCCATAATATC+TGG | 0.417138 | 4.3:-51552157 | MS.gene071109:CDS |
| AAAATGTATCCAACCTGTAC+AGG | 0.418915 | 4.3:+51554049 | None:intergenic |
| ATGAATGAAAGGCGCGAGTT+GGG | 0.425930 | 4.3:+51558515 | None:intergenic |
| TCTGGTGGATGCGCGTCCAT+TGG | 0.439532 | 4.3:+51558420 | None:intergenic |
| CGACGCCGTAGCCGCGGCGG+TGG | 0.446823 | 4.3:-51558238 | MS.gene071109:CDS |
| CACGACTTGAGCACAATTCA+AGG | 0.447927 | 4.3:+51555367 | None:intergenic |
| GCGTCGTCTGCTCCTGCATC+AGG | 0.450026 | 4.3:+51558255 | None:intergenic |
| CAGAAGACATAGGAGAAAAC+AGG | 0.454769 | 4.3:-51563656 | MS.gene071109:CDS |
| ATTGCAGAGATAGCTGGTTT+GGG | 0.457276 | 4.3:+51552211 | None:intergenic |
| CATGTGCAAAAGAACAGTTC+TGG | 0.459711 | 4.3:+51567395 | None:intergenic |
| TGAATCCACCGCCGCGGCTA+CGG | 0.461622 | 4.3:+51558233 | None:intergenic |
| TCGGATCGATGATCATTCTT+CGG | 0.462677 | 4.3:-51558310 | MS.gene071109:CDS |
| TCTCGAGCCGGTGAATATCT+TGG | 0.463968 | 4.3:+51564803 | None:intergenic |
| TCTTGTGAATCTTCTGCTGA+TGG | 0.464383 | 4.3:-51558156 | MS.gene071109:CDS |
| GTTGTGTTCCAAATTATGTT+TGG | 0.469670 | 4.3:+51562473 | None:intergenic |
| TTTAGGTAATAATGACTTGA+GGG | 0.469756 | 4.3:-51564855 | MS.gene071109:CDS |
| TAAGGTGTGGGTGCGGCGGA+GGG | 0.472774 | 4.3:+51558446 | None:intergenic |
| AGTCTTCAACGGCGGCGGCG+GGG | 0.473539 | 4.3:+51558382 | None:intergenic |
| TAACAACATTCATTCAGAAA+AGG | 0.473891 | 4.3:-51561521 | MS.gene071109:intron |
| GTAAGCAATGGTGAGAATAC+TGG | 0.475904 | 4.3:-51562510 | MS.gene071109:CDS |
| TTATGGCTGGTTCCTTGCCA+AGG | 0.479240 | 4.3:-51554306 | MS.gene071109:intron |
| ATAATGGAATTGAAGTATCT+AGG | 0.479355 | 4.3:-51561591 | MS.gene071109:CDS |
| GAGATAGCTGGTTTGGGAGA+TGG | 0.479500 | 4.3:+51552217 | None:intergenic |
| AGATCAGTTGTGGCTGTTGT+TGG | 0.480034 | 4.3:-51552514 | MS.gene071109:CDS |
| GTCTTTACATCTGTAGGTGT+TGG | 0.482799 | 4.3:-51552184 | MS.gene071109:CDS |
| TCGTCTGCTCCTCCTGATGC+AGG | 0.483156 | 4.3:-51558267 | MS.gene071109:CDS |
| ACTCTCATTGCAGAGATAGC+TGG | 0.483703 | 4.3:+51552205 | None:intergenic |
| AAAGTACTTCAAACATGTTA+CGG | 0.487465 | 4.3:+51554327 | None:intergenic |
| CACCCACACCTTACCTCCAA+TGG | 0.488447 | 4.3:-51558436 | MS.gene071109:CDS |
| CTGATACCAATGAAACTTCA+AGG | 0.492224 | 4.3:-51561193 | MS.gene071109:CDS |
| GTTATTAAGATCATCAGAGC+TGG | 0.494439 | 4.3:+51553236 | None:intergenic |
| CGACCTCTTGCCTCTCGAGC+CGG | 0.496526 | 4.3:+51564791 | None:intergenic |
| ATACTTCAATTCCATTATCA+GGG | 0.497610 | 4.3:+51561596 | None:intergenic |
| ACAACACGCTCGTCGCAACT+TGG | 0.497641 | 4.3:-51567518 | MS.gene071109:CDS |
| GCTTCTTCAGATGAAGGAGA+TGG | 0.498793 | 4.3:-51553123 | MS.gene071109:intron |
| TGCTGCGGGGAATCAAATCT+GGG | 0.499304 | 4.3:+51561114 | None:intergenic |
| TTCTAGAATTCAGGAACTTG+AGG | 0.500849 | 4.3:-51562983 | MS.gene071109:CDS |
| ACTCGGTGACCGCCCTGTAC+AGG | 0.502906 | 4.3:-51554062 | MS.gene071109:intron |
| ACAAGGGTCTCCATTAAAGT+TGG | 0.503321 | 4.3:+51553050 | None:intergenic |
| CAGGTCCGACTTCAAAGGTT+CGG | 0.509285 | 4.3:-51562597 | MS.gene071109:CDS |
| GGCAGCAGCAGCAGCCCATG+TGG | 0.509296 | 4.3:-51560938 | MS.gene071109:CDS |
| ACTTCAATCCTGGATTCCTT+CGG | 0.509539 | 4.3:+51561281 | None:intergenic |
| GTTACCGTTGTGTTTATCAT+CGG | 0.510198 | 4.3:-51569265 | MS.gene071109:CDS |
| AATTATGTTTGGTGATTGGA+GGG | 0.510840 | 4.3:+51562484 | None:intergenic |
| TGTTTGAAGTACTTTATGGC+TGG | 0.512196 | 4.3:-51554319 | MS.gene071109:CDS |
| AGCGTTGATATTGTAAGCAA+TGG | 0.513750 | 4.3:-51562522 | MS.gene071109:CDS |
| AAGCAATCAAGTATGGTGGC+AGG | 0.513774 | 4.3:-51554090 | MS.gene071109:CDS |
| TGTAGGTGTTGGCGTGGCTG+GGG | 0.514441 | 4.3:-51552173 | MS.gene071109:CDS |
| GTCCGCCACATTATTAAAAG+TGG | 0.514526 | 4.3:-51552548 | MS.gene071109:CDS |
| ATGCGCGTCCATTGGAGGTA+AGG | 0.514609 | 4.3:+51558428 | None:intergenic |
| AAATTATGTTTGGTGATTGG+AGG | 0.515054 | 4.3:+51562483 | None:intergenic |
| AACTTCCAGAAATATCACTT+TGG | 0.517782 | 4.3:+51563623 | None:intergenic |
| CTCTGATGATCTTAATAACA+TGG | 0.517890 | 4.3:-51553232 | MS.gene071109:intron |
| ATATAGTCCACTGAGGTCTC+CGG | 0.522959 | 4.3:-51564338 | MS.gene071109:CDS |
| AACCTGCGAATAATTGCTGC+GGG | 0.524739 | 4.3:+51561100 | None:intergenic |
| GTTGATATTGAGCATGATAA+CGG | 0.525710 | 4.3:-51561218 | MS.gene071109:CDS |
| TTGGAGGTAAGGTGTGGGTG+CGG | 0.526482 | 4.3:+51558439 | None:intergenic |
| TGAGGTCTCCGGAGAAAAGA+AGG | 0.526705 | 4.3:-51564327 | MS.gene071109:intron |
| CTCAGTTAAACAAAGAGGAT+GGG | 0.527683 | 4.3:-51562960 | MS.gene071109:CDS |
| ATCACCTCCAAGATATTCAC+CGG | 0.528176 | 4.3:-51564810 | MS.gene071109:CDS |
| TGGAATGGCATTACAGGTGA+AGG | 0.528941 | 4.3:-51561156 | MS.gene071109:CDS |
| GGTGGATGCGCGTCCATTGG+AGG | 0.531968 | 4.3:+51558423 | None:intergenic |
| TGAGGGATAAACTTGACAAA+AGG | 0.534124 | 4.3:-51564838 | MS.gene071109:CDS |
| GAATGTTCACATACTATGAC+AGG | 0.534672 | 4.3:+51552451 | None:intergenic |
| AGCAGACGACGCCGTAGCCG+CGG | 0.536195 | 4.3:-51558244 | MS.gene071109:CDS |
| CAATAATTCCATGAACAGAC+TGG | 0.536995 | 4.3:+51569319 | None:intergenic |
| ATATACAGCCGAAGGAATCC+AGG | 0.536998 | 4.3:-51561289 | MS.gene071109:intron |
| TTCTAGAATTGGTGCTGATG+AGG | 0.537743 | 4.3:-51562553 | MS.gene071109:CDS |
| GCTCAGTTAAACAAAGAGGA+TGG | 0.540853 | 4.3:-51562961 | MS.gene071109:CDS |
| TCCTGGGTCTGAGTTTCGTG+TGG | 0.541592 | 4.3:-51554122 | MS.gene071109:CDS |
| CATGGAGTAAGATGCCACTT+TGG | 0.542574 | 4.3:-51553308 | MS.gene071109:CDS |
| AATGAAGTCTTCAACGGCGG+CGG | 0.544387 | 4.3:+51558377 | None:intergenic |
| TCCCCGCAGCAATTATTCGC+AGG | 0.545017 | 4.3:-51561102 | MS.gene071109:intron |
| GAGGTAAGGTGTGGGTGCGG+CGG | 0.546902 | 4.3:+51558442 | None:intergenic |
| GGAGTTGAGTGCGAGTGAGG+TGG | 0.547101 | 4.3:+51558538 | None:intergenic |
| ACCGTTGTGTTTATCATCGG+AGG | 0.549225 | 4.3:-51569262 | MS.gene071109:intron |
| TGAATGAAAGGCGCGAGTTG+GGG | 0.550550 | 4.3:+51558516 | None:intergenic |
| GATGAATGAAAGGCGCGAGT+TGG | 0.551408 | 4.3:+51558514 | None:intergenic |
| AGAGGTCGGCAGACCATTCG+CGG | 0.553269 | 4.3:-51564776 | MS.gene071109:intron |
| GCTTATCCGATAGCATGGTT+CGG | 0.555726 | 4.3:-51558329 | MS.gene071109:CDS |
| CTTCTTGAACACTCTCATCC+AGG | 0.556266 | 4.3:+51563019 | None:intergenic |
| ATCTTGTGTCTAACCGCGAA+TGG | 0.556846 | 4.3:+51564763 | None:intergenic |
| AGACGAAGCTGCTGCATCGA+CGG | 0.557145 | 4.3:+51558284 | None:intergenic |
| ACATTCCTCGACAACTCCTC+AGG | 0.557419 | 4.3:+51558189 | None:intergenic |
| CGAGCCGGTGAATATCTTGG+AGG | 0.558434 | 4.3:+51564806 | None:intergenic |
| CTGGAAGGAAAACACAAGAA+AGG | 0.561449 | 4.3:-51561559 | MS.gene071109:CDS |
| GTAAGCTTGAGGTCTTTCCT+GGG | 0.562244 | 4.3:-51554138 | MS.gene071109:CDS |
| GACAGAAAATGATAATGGAA+TGG | 0.562419 | 4.3:-51561171 | MS.gene071109:CDS |
| CTAGTTAAACCATGTCCACA+TGG | 0.563579 | 4.3:+51560923 | None:intergenic |
| TCAACTTTGAACAATTCGAT+CGG | 0.563735 | 4.3:+51567488 | None:intergenic |
| CTTACGGCAAACTGGATATG+TGG | 0.565826 | 4.3:+51570127 | None:intergenic |
| AGTTGTGGCTGTTGTTGGAA+AGG | 0.565891 | 4.3:-51552509 | MS.gene071109:CDS |
| AGCAGCAGCCCATGTGGACA+TGG | 0.566741 | 4.3:-51560932 | MS.gene071109:intron |
| GTTGTGGCTGTTGTTGGAAA+GGG | 0.566868 | 4.3:-51552508 | MS.gene071109:CDS |
| AAGATATTCACCGGCTCGAG+AGG | 0.567135 | 4.3:-51564801 | MS.gene071109:CDS |
| TAACTTAATGTGCAGTATGA+GGG | 0.569651 | 4.3:-51561000 | MS.gene071109:intron |
| GATCACAGGTCCGACTTCAA+AGG | 0.571245 | 4.3:-51562602 | MS.gene071109:CDS |
| GACAACATGAGCTGCCATGC+TGG | 0.571700 | 4.3:+51561250 | None:intergenic |
| GTCCATTGGAGGTAAGGTGT+GGG | 0.572624 | 4.3:+51558434 | None:intergenic |
| TTGAGATGGTGATGAATGAA+AGG | 0.577954 | 4.3:+51558504 | None:intergenic |
| TGTGAATCTTCTGCTGATGG+TGG | 0.578930 | 4.3:-51558153 | MS.gene071109:CDS |
| GGATGAGAGTGTTCAAGAAG+TGG | 0.580126 | 4.3:-51563016 | MS.gene071109:CDS |
| ACTGATCTCGTTCATGGACA+AGG | 0.581009 | 4.3:+51553033 | None:intergenic |
| TCAGTTAAACAAAGAGGATG+GGG | 0.582580 | 4.3:-51562959 | MS.gene071109:CDS |
| GAACCGAAAATCCCAACTAT+CGG | 0.583849 | 4.3:-51563381 | MS.gene071109:intron |
| CACAACGGTAACCACCTTCG+AGG | 0.583878 | 4.3:+51569276 | None:intergenic |
| GCCACACGAAACTCAGACCC+AGG | 0.583957 | 4.3:+51554121 | None:intergenic |
| ATGAGAGTCTTTACATCTGT+AGG | 0.586791 | 4.3:-51552190 | MS.gene071109:CDS |
| CGTCCATTGGAGGTAAGGTG+TGG | 0.588586 | 4.3:+51558433 | None:intergenic |
| ATCGATCCGAACCATGCTAT+CGG | 0.589640 | 4.3:+51558323 | None:intergenic |
| TGAGCTGCCATGCTGGTTGA+CGG | 0.590544 | 4.3:+51561257 | None:intergenic |
| TCGTCTGCTCCTGCATCAGG+AGG | 0.591008 | 4.3:+51558258 | None:intergenic |
| GTTGGAAAGGGACATCTACA+AGG | 0.592838 | 4.3:-51552496 | MS.gene071109:CDS |
| CGCTTCCTGAGGAGTTGTCG+AGG | 0.593829 | 4.3:-51558194 | MS.gene071109:CDS |
| GTGAATGAAGTCTTCAACGG+CGG | 0.594702 | 4.3:+51558374 | None:intergenic |
| AGGGTTGTTGAGAAGAATTG+GGG | 0.599401 | 4.3:+51558465 | None:intergenic |
| AGCAATCAAGTATGGTGGCA+GGG | 0.600872 | 4.3:-51554089 | MS.gene071109:CDS |
| ATTTAGGTAATAATGACTTG+AGG | 0.602441 | 4.3:-51564856 | MS.gene071109:CDS |
| GATCTCCGAACCTTTGAAGT+CGG | 0.606184 | 4.3:+51562592 | None:intergenic |
| GCATGCAGAACGAGATTCTG+TGG | 0.606610 | 4.3:-51562424 | MS.gene071109:CDS |
| CATAGAAACATGCCTTGGCA+AGG | 0.609074 | 4.3:+51554294 | None:intergenic |
| GGAGAGCTTATCCGATAGCA+TGG | 0.611123 | 4.3:-51558334 | MS.gene071109:CDS |
| GCCGCTGTCAGCTACCTCGA+AGG | 0.611608 | 4.3:-51569290 | MS.gene071109:CDS |
| TCAGTTGAAACAGCAAGAAG+CGG | 0.613051 | 4.3:-51561676 | MS.gene071109:CDS |
| TTATTAAGATCATCAGAGCT+GGG | 0.614482 | 4.3:+51553237 | None:intergenic |
| ACAGATTGCCAGTAAGCTTG+AGG | 0.615590 | 4.3:-51554149 | MS.gene071109:intron |
| TATGGTGGCAGGGTGATACT+CGG | 0.615995 | 4.3:-51554079 | MS.gene071109:CDS |
| TACTTCAATTCCATTATCAG+GGG | 0.616698 | 4.3:+51561597 | None:intergenic |
| AAATGTATCCAACCTGTACA+GGG | 0.617068 | 4.3:+51554050 | None:intergenic |
| AGATTACATTGAAGAGAACA+TGG | 0.619490 | 4.3:-51553326 | MS.gene071109:CDS |
| AAGAGTATTTCTAGAACCAG+AGG | 0.619782 | 4.3:+51563549 | None:intergenic |
| GAATGAAAGGCGCGAGTTGG+GGG | 0.623865 | 4.3:+51558517 | None:intergenic |
| GGAATGGCATTACAGGTGAA+GGG | 0.625351 | 4.3:-51561155 | MS.gene071109:CDS |
| TGAAGTGCCGTCAACCAGCA+TGG | 0.625663 | 4.3:-51561264 | MS.gene071109:CDS |
| TGGTTCTAGAAATACTCTTG+AGG | 0.626257 | 4.3:-51563545 | MS.gene071109:CDS |
| GGCAGCTCATGTTGTCGATG+AGG | 0.635035 | 4.3:-51561243 | MS.gene071109:CDS |
| AGACGACGCCGTAGCCGCGG+CGG | 0.635700 | 4.3:-51558241 | MS.gene071109:CDS |
| TGTGGATGGTCTTGATGAAG+AGG | 0.636361 | 4.3:-51560959 | MS.gene071109:CDS |
| TGAGGCTCAGTTAAACAAAG+AGG | 0.640733 | 4.3:-51562965 | MS.gene071109:CDS |
| TACATCTGTAGGTGTTGGCG+TGG | 0.642917 | 4.3:-51552179 | MS.gene071109:CDS |
| AGTTGCAAGATGAACTGAAG+AGG | 0.645881 | 4.3:-51562747 | MS.gene071109:intron |
| GAAGAAGCAATCAAGTATGG+TGG | 0.646667 | 4.3:-51554094 | MS.gene071109:CDS |
| TGGAACTGCTCATGTATCTG+AGG | 0.647116 | 4.3:-51558109 | MS.gene071109:intron |
| AAGTGAGAGCAGATCAGTTG+TGG | 0.647491 | 4.3:-51552524 | MS.gene071109:CDS |
| TGTCAATTTACTGAAACCAG+AGG | 0.648298 | 4.3:-51555516 | MS.gene071109:intron |
| TAACCTGCGAATAATTGCTG+CGG | 0.648704 | 4.3:+51561099 | None:intergenic |
| GATGTGAATGAAGTCTTCAA+CGG | 0.649578 | 4.3:+51558371 | None:intergenic |
| CTGATCTCGTTCATGGACAA+GGG | 0.650040 | 4.3:+51553034 | None:intergenic |
| GCTGTCAGCTACCTCGAAGG+TGG | 0.650220 | 4.3:-51569287 | MS.gene071109:CDS |
| AACGAGAATGTGGATGTGGA+TGG | 0.650385 | 4.3:-51560973 | MS.gene071109:CDS |
| ATCGATTGACAAGAGTTGTG+AGG | 0.651602 | 4.3:-51561623 | MS.gene071109:CDS |
| TCACCGGCTCGAGAGGCAAG+AGG | 0.653046 | 4.3:-51564794 | MS.gene071109:CDS |
| TTATGTGCGCTTTATCAGAA+CGG | 0.656000 | 4.3:-51567430 | MS.gene071109:CDS |
| CATAATTTGGAACACAACGG+CGG | 0.658852 | 4.3:-51562468 | MS.gene071109:CDS |
| CGGCTCGAGAGGCAAGAGGT+CGG | 0.660465 | 4.3:-51564790 | MS.gene071109:CDS |
| ACGGCAAACTGGATATGTGG+TGG | 0.665841 | 4.3:+51570130 | None:intergenic |
| AAACATAATTTGGAACACAA+CGG | 0.668028 | 4.3:-51562471 | MS.gene071109:CDS |
| AAACAGCAAGAAGCGGAAAG+CGG | 0.668812 | 4.3:-51561669 | MS.gene071109:CDS |
| GGTGCAGTGACAGAAGACAT+AGG | 0.669837 | 4.3:-51563666 | MS.gene071109:intron |
| TCTAGGCACCAAGATCTGGA+AGG | 0.672774 | 4.3:-51561574 | MS.gene071109:CDS |
| AGGAGAAAACAGGATATCAG+TGG | 0.680364 | 4.3:-51563646 | MS.gene071109:CDS |
| ACAGAAAGTTACGCTTCCTG+AGG | 0.681688 | 4.3:-51558205 | MS.gene071109:CDS |
| TAGTTAAACCATGTCCACAT+GGG | 0.685652 | 4.3:+51560924 | None:intergenic |
| GATTGACAAGAGTTGTGAGG+AGG | 0.689653 | 4.3:-51561620 | MS.gene071109:CDS |
| GCTGCGGGGAATCAAATCTG+GGG | 0.713601 | 4.3:+51561115 | None:intergenic |
| ACCTTCGAGGTAGCTGACAG+CGG | 0.727420 | 4.3:+51569289 | None:intergenic |
| GGGTTGTTGAGAAGAATTGG+GGG | 0.728093 | 4.3:+51558466 | None:intergenic |
| TCTGTGGAAGAGTTACAACA+AGG | 0.739554 | 4.3:-51562408 | MS.gene071109:intron |
| ACCTCCGATGATAAACACAA+CGG | 0.740253 | 4.3:+51569261 | None:intergenic |
| ACCTGCGAATAATTGCTGCG+GGG | 0.744720 | 4.3:+51561101 | None:intergenic |
| TTGATCTGAATCCACCGCCG+CGG | 0.765343 | 4.3:+51558227 | None:intergenic |
| TTGCAGAATATAGTCCACTG+AGG | 0.772392 | 4.3:-51564345 | MS.gene071109:intron |
| TGTATCCAACCTGTACAGGG+CGG | 0.779909 | 4.3:+51554053 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 51552132 | 51570191 | 51552132 | ID=MS.gene071109 |
| chr4.3 | mRNA | 51552132 | 51570191 | 51552132 | ID=MS.gene071109.t1;Parent=MS.gene071109 |
| chr4.3 | exon | 51570132 | 51570191 | 51570132 | ID=MS.gene071109.t1.exon1;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51570132 | 51570191 | 51570132 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51569263 | 51569354 | 51569263 | ID=MS.gene071109.t1.exon2;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51569263 | 51569354 | 51569263 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51569129 | 51569151 | 51569129 | ID=MS.gene071109.t1.exon3;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51569129 | 51569151 | 51569129 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51567356 | 51567568 | 51567356 | ID=MS.gene071109.t1.exon4;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51567356 | 51567568 | 51567356 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51564777 | 51564890 | 51564777 | ID=MS.gene071109.t1.exon5;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51564777 | 51564890 | 51564777 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51564328 | 51564361 | 51564328 | ID=MS.gene071109.t1.exon6;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51564328 | 51564361 | 51564328 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51563540 | 51563681 | 51563540 | ID=MS.gene071109.t1.exon7;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51563540 | 51563681 | 51563540 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51563382 | 51563438 | 51563382 | ID=MS.gene071109.t1.exon8;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51563382 | 51563438 | 51563382 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51562949 | 51563046 | 51562949 | ID=MS.gene071109.t1.exon9;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51562949 | 51563046 | 51562949 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51562748 | 51562819 | 51562748 | ID=MS.gene071109.t1.exon10;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51562748 | 51562819 | 51562748 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51562409 | 51562623 | 51562409 | ID=MS.gene071109.t1.exon11;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51562409 | 51562623 | 51562409 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51561522 | 51561703 | 51561522 | ID=MS.gene071109.t1.exon12;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51561522 | 51561703 | 51561522 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51561103 | 51561303 | 51561103 | ID=MS.gene071109.t1.exon13;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51561103 | 51561303 | 51561103 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51560933 | 51561007 | 51560933 | ID=MS.gene071109.t1.exon14;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51560933 | 51561007 | 51560933 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51558110 | 51558571 | 51558110 | ID=MS.gene071109.t1.exon15;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51558110 | 51558571 | 51558110 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51555517 | 51555564 | 51555517 | ID=MS.gene071109.t1.exon16;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51555517 | 51555564 | 51555517 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51555338 | 51555397 | 51555338 | ID=MS.gene071109.t1.exon17;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51555338 | 51555397 | 51555338 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51554307 | 51554390 | 51554307 | ID=MS.gene071109.t1.exon18;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51554307 | 51554390 | 51554307 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51554063 | 51554167 | 51554063 | ID=MS.gene071109.t1.exon19;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51554063 | 51554167 | 51554063 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51553233 | 51553346 | 51553233 | ID=MS.gene071109.t1.exon20;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51553233 | 51553346 | 51553233 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51553035 | 51553135 | 51553035 | ID=MS.gene071109.t1.exon21;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51553035 | 51553135 | 51553035 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51552465 | 51552576 | 51552465 | ID=MS.gene071109.t1.exon22;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51552465 | 51552576 | 51552465 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| chr4.3 | exon | 51552132 | 51552260 | 51552132 | ID=MS.gene071109.t1.exon23;Parent=MS.gene071109.t1 |
| chr4.3 | CDS | 51552132 | 51552260 | 51552132 | ID=cds.MS.gene071109.t1;Parent=MS.gene071109.t1 |
| Gene Sequence |
| Protein sequence |
