AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071189

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071189.t1 MTR_4g064160 95.197 687 25 5 1 680 1 686 0.0 1347
MS.gene071189.t1 MTR_7g062120 48.759 685 319 10 23 680 63 742 0.0 636
MS.gene071189.t1 MTR_2g097410 49.169 722 305 19 8 680 35 743 0.0 628
MS.gene071189.t1 MTR_4g064150 49.560 682 289 17 25 680 83 735 0.0 609
MS.gene071189.t1 MTR_4g064120 48.485 660 281 9 25 680 24 628 0.0 599
MS.gene071189.t1 MTR_4g064180 47.879 660 285 8 25 680 24 628 0.0 593
MS.gene071189.t1 MTR_2g097310 56.768 495 179 7 189 680 178 640 0.0 560
MS.gene071189.t1 MTR_2g097350 60.811 444 161 6 240 680 209 642 0.0 556
MS.gene071189.t1 MTR_2g097467 44.444 666 303 13 28 680 45 656 0.0 536
MS.gene071189.t1 MTR_2g097473 44.760 668 298 14 28 680 45 656 0.0 534
MS.gene071189.t1 MTR_2g097463 44.104 653 315 11 33 680 50 657 0.0 530
MS.gene071189.t1 MTR_4g064200 55.921 456 187 5 235 680 201 652 2.47e-172 507
MS.gene071189.t1 MTR_2g097380 49.804 510 179 10 177 680 125 563 8.25e-160 472
MS.gene071189.t1 MTR_2g082090 32.368 380 254 2 298 677 202 578 4.35e-68 233
MS.gene071189.t1 MTR_5g097480 32.796 372 249 1 306 677 173 543 5.12e-66 227
MS.gene071189.t1 MTR_7g027190 33.250 400 237 5 295 677 286 672 5.10e-64 224
MS.gene071189.t1 MTR_1g029420 32.973 370 247 1 308 677 223 591 5.49e-64 223
MS.gene071189.t1 MTR_2g026250 31.551 374 254 2 305 677 223 595 6.95e-63 220
MS.gene071189.t1 MTR_3g056110 30.979 439 287 8 245 677 113 541 1.58e-62 218
MS.gene071189.t1 MTR_4g133660 31.467 375 255 2 305 678 170 543 2.30e-62 217
MS.gene071189.t1 MTR_3g089055 31.351 370 253 1 308 677 196 564 5.50e-61 214
MS.gene071189.t1 MTR_3g089055 31.351 370 253 1 308 677 201 569 5.90e-61 214
MS.gene071189.t1 MTR_5g094450 32.361 377 248 5 306 677 157 531 1.33e-60 212
MS.gene071189.t1 MTR_4g104020 29.688 384 247 6 307 677 146 519 1.42e-54 195
MS.gene071189.t1 MTR_8g442410 30.000 420 266 9 273 677 118 524 1.45e-54 196
MS.gene071189.t1 MTR_4g076140 28.671 429 237 8 310 677 48 468 1.68e-48 177
MS.gene071189.t1 MTR_3g065980 30.155 388 241 7 305 677 167 539 9.76e-48 177
MS.gene071189.t1 MTR_7g074650 30.328 366 241 5 314 679 442 793 1.20e-46 177
MS.gene071189.t1 MTR_3g022830 27.512 418 244 7 311 677 26 435 5.04e-43 161
MS.gene071189.t1 MTR_4g097080 26.913 379 265 5 308 679 131 504 2.43e-39 152
MS.gene071189.t1 MTR_4g102790 26.494 385 263 9 306 679 288 663 4.41e-39 154
MS.gene071189.t1 MTR_2g089100 27.340 406 254 9 307 680 49 445 1.34e-38 149
MS.gene071189.t1 MTR_2g034250 26.873 387 262 7 305 677 205 584 8.78e-37 146
MS.gene071189.t1 MTR_2g034260 25.641 390 262 6 305 677 205 583 1.74e-36 145
MS.gene071189.t1 MTR_4g076020 28.226 372 234 8 314 680 88 431 2.77e-36 142
MS.gene071189.t1 MTR_7g057230 27.807 374 251 7 311 677 295 656 1.81e-34 140
MS.gene071189.t1 MTR_4g077760 28.760 379 248 9 307 677 190 554 4.22e-34 137
MS.gene071189.t1 MTR_1g069725 28.609 381 244 13 305 678 104 463 8.00e-34 135
MS.gene071189.t1 MTR_2g034280 25.255 392 259 6 305 677 198 574 1.44e-32 133
MS.gene071189.t1 MTR_7g109580 26.772 381 260 8 305 677 184 553 9.83e-32 130
MS.gene071189.t1 MTR_5g015490 26.893 383 262 7 310 679 114 491 1.49e-31 129
MS.gene071189.t1 MTR_5g009080 33.810 210 132 2 310 518 56 259 1.57e-31 129
MS.gene071189.t1 MTR_5g009080 30.201 149 104 0 529 677 329 477 6.23e-20 94.0
MS.gene071189.t1 MTR_1g096030 28.244 393 243 15 310 677 80 458 6.37e-29 120
MS.gene071189.t1 MTR_6g047750 26.963 382 254 9 308 677 293 661 2.75e-27 117
MS.gene071189.t1 MTR_1g086970 25.253 396 254 15 305 677 101 477 1.31e-26 114
MS.gene071189.t1 MTR_3g072710 25.648 386 245 12 319 678 131 500 4.54e-25 110
MS.gene071189.t1 MTR_4g095500 24.882 422 262 12 307 680 56 470 2.48e-24 107
MS.gene071189.t1 MTR_5g015950 24.466 421 267 12 307 680 32 448 4.76e-24 106
MS.gene071189.t1 MTR_3g053270 24.466 421 267 12 307 680 32 448 4.76e-24 106
MS.gene071189.t1 MTR_5g058860 25.862 406 264 15 296 678 106 497 1.68e-23 105
MS.gene071189.t1 MTR_2g099110 24.422 389 265 8 310 679 74 452 7.14e-22 99.8
MS.gene071189.t1 MTR_8g093070 25.570 395 241 18 307 680 136 498 1.23e-17 87.0
MS.gene071189.t1 MTR_0092s0100 22.439 410 278 10 280 677 346 727 3.62e-17 86.3
MS.gene071189.t1 MTR_0092s0100 22.439 410 278 10 280 677 349 730 3.66e-17 86.3
MS.gene071189.t1 MTR_8g020840 23.810 483 295 17 230 677 103 547 2.63e-13 73.6
MS.gene071189.t1 MTR_4g026485 19.417 412 284 11 280 677 246 623 4.34e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071189.t1 AT1G07530 54.532 684 269 10 37 680 86 767 0.0 718
MS.gene071189.t1 AT2G29060 50.941 691 278 15 15 679 38 693 0.0 655
MS.gene071189.t1 AT2G29060 50.593 674 269 15 15 679 38 656 0.0 649
MS.gene071189.t1 AT1G07520 47.126 696 307 18 8 680 39 696 0.0 552
MS.gene071189.t1 AT1G07520 47.126 696 307 18 8 680 38 695 0.0 551
MS.gene071189.t1 AT2G37650 44.543 678 317 14 27 679 71 714 0.0 536
MS.gene071189.t1 AT2G37650 44.543 678 317 14 27 679 59 702 0.0 535
MS.gene071189.t1 AT2G29065 46.880 657 279 16 34 680 34 630 0.0 533
MS.gene071189.t1 AT1G07520 51.706 557 218 16 146 680 4 531 4.67e-178 518
MS.gene071189.t1 AT1G07520 51.706 557 218 16 146 680 4 531 4.67e-178 518
MS.gene071189.t1 AT5G59450 47.222 468 241 4 217 680 135 600 2.77e-153 457
MS.gene071189.t1 AT3G46600 48.098 447 220 4 234 680 147 581 3.14e-145 436
MS.gene071189.t1 AT3G46600 48.098 447 220 5 234 680 115 549 3.78e-145 434
MS.gene071189.t1 AT3G46600 51.872 374 179 1 307 680 1 373 1.20e-139 414
MS.gene071189.t1 AT1G50600 33.871 372 245 1 306 677 155 525 4.81e-67 229
MS.gene071189.t1 AT1G50600 33.871 372 245 1 306 677 230 600 3.57e-66 229
MS.gene071189.t1 AT1G50600 33.871 372 245 1 306 677 226 596 3.61e-66 229
MS.gene071189.t1 AT5G48150 33.512 373 246 2 306 677 118 489 1.04e-64 222
MS.gene071189.t1 AT5G48150 33.512 373 246 2 306 677 118 489 1.04e-64 222
MS.gene071189.t1 AT5G48150 33.512 373 246 2 306 677 118 489 1.04e-64 222
MS.gene071189.t1 AT5G48150 33.512 373 246 2 306 677 118 489 1.04e-64 222
MS.gene071189.t1 AT2G04890 32.796 372 242 2 306 677 49 412 7.14e-64 218
MS.gene071189.t1 AT1G21450 33.514 370 246 0 308 677 223 592 8.37e-64 222
MS.gene071189.t1 AT4G17230 32.533 375 252 1 305 679 153 526 2.93e-55 197
MS.gene071189.t1 AT4G17230 32.533 375 252 1 305 679 153 526 2.93e-55 197
MS.gene071189.t1 AT3G03450 31.398 379 242 9 305 677 178 544 5.43e-51 186
MS.gene071189.t1 AT3G54220 30.000 370 240 6 314 679 297 651 2.10e-49 184
MS.gene071189.t1 AT1G66350 32.181 376 232 10 305 677 150 505 2.80e-49 181
MS.gene071189.t1 AT1G14920 30.688 378 241 8 305 677 167 528 4.02e-47 175
MS.gene071189.t1 AT5G17490 31.347 386 227 11 305 677 155 515 1.47e-46 173
MS.gene071189.t1 AT5G66770 31.436 369 239 8 314 677 224 583 3.78e-45 170
MS.gene071189.t1 AT2G01570 29.815 379 243 9 305 677 219 580 1.24e-43 166
MS.gene071189.t1 AT3G50650 28.771 358 238 6 328 677 193 541 5.60e-37 146
MS.gene071189.t1 AT5G41920 26.873 387 258 7 298 677 31 399 1.92e-36 142
MS.gene071189.t1 AT4G37650 27.110 391 260 8 309 679 145 530 1.30e-35 142
MS.gene071189.t1 AT1G63100 29.830 352 232 8 306 652 273 614 1.53e-35 143
MS.gene071189.t1 AT1G63100 29.830 352 232 8 306 652 248 589 1.54e-35 143
MS.gene071189.t1 AT5G52510 27.224 371 236 11 326 677 284 639 9.95e-32 131
MS.gene071189.t1 AT3G49950 27.720 386 257 11 310 679 30 409 1.69e-30 124
MS.gene071189.t1 AT1G50420 30.189 212 139 2 310 518 57 262 5.43e-29 121
MS.gene071189.t1 AT1G50420 32.215 149 101 0 529 677 330 478 6.27e-21 97.1
MS.gene071189.t1 AT1G55580 24.941 421 249 11 307 677 41 444 5.68e-29 120
MS.gene071189.t1 AT4G08250 25.055 451 304 14 248 677 39 476 1.45e-25 111
MS.gene071189.t1 AT3G13840 22.772 404 265 14 294 677 133 509 3.46e-13 73.2
MS.gene071189.t1 AT4G00150 21.149 383 264 7 303 677 201 553 2.83e-12 70.1

Find 166 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCACACCTTTGGATTTA+TGG 0.102821 4.2:-40908688 MS.gene071189:CDS
ACTCTCCACATTGTAGATTT+TGG 0.171656 4.2:-40907451 MS.gene071189:CDS
GTGTAACCGGTGGTGGATTT+AGG 0.183770 4.2:-40908266 MS.gene071189:CDS
AAACAAAATCAACAGGAAAA+TGG 0.197416 4.2:+40908340 None:intergenic
TCTTCTTCTGTAGCATTGTT+TGG 0.273251 4.2:+40908642 None:intergenic
TTACATTAACCAAATGCTTA+TGG 0.276145 4.2:-40908574 MS.gene071189:CDS
CTTCAAGTCCTCAACTTTGA+TGG 0.287285 4.2:+40907216 None:intergenic
AGTAGTATGTATAAAGATAT+TGG 0.295160 4.2:+40907072 None:intergenic
AATGGAAGGTTCGGAATATA+AGG 0.302414 4.2:-40906838 MS.gene071189:CDS
TTACTAAGCAAGTTTGAATC+AGG 0.311461 4.2:+40908234 None:intergenic
GTCGGCAGCAGAGTTTCTTT+TGG 0.312934 4.2:+40907576 None:intergenic
GGCAGGCCTGAAGCCAGGTT+GGG 0.342579 4.2:+40907333 None:intergenic
AAAGAAGAAGCAAATAATTC+TGG 0.356533 4.2:-40907847 MS.gene071189:CDS
ACAACCAATGGATTCACTTT+AGG 0.359550 4.2:+40908156 None:intergenic
AGAAGGGTGTTGTGGATCTA+AGG 0.362488 4.2:-40907789 MS.gene071189:CDS
TGTAACCGGTGGTGGATTTA+GGG 0.363942 4.2:-40908265 MS.gene071189:CDS
TCAATGCTATTGCACAGAAA+TGG 0.371102 4.2:-40907243 MS.gene071189:CDS
TGATGTTTGAGAAAGAGTTC+TGG 0.377337 4.2:-40906931 MS.gene071189:CDS
AAATGGGTTTGCAATATAGA+AGG 0.381555 4.2:+40908357 None:intergenic
TCATAGATGGATCACACCTT+TGG 0.385301 4.2:-40908696 None:intergenic
GATAAGGTGCTGCTTGGAAC+GGG 0.386499 4.2:-40907919 MS.gene071189:CDS
CGGCAGGCCTGAAGCCAGGT+TGG 0.388141 4.2:+40907332 None:intergenic
AGTAATAGCAGTAGCGATTT+CGG 0.389012 4.2:-40908288 MS.gene071189:CDS
ATGTATGTTTCATGATTCAT+TGG 0.389528 4.2:-40908529 MS.gene071189:CDS
TGTCTTCTTCCATAAGCATT+TGG 0.390726 4.2:+40908565 None:intergenic
AACAAAATCAACAGGAAAAT+GGG 0.391391 4.2:+40908341 None:intergenic
TTCCATTTCCTGTATGTCTC+TGG 0.394619 4.2:+40906854 None:intergenic
AAATCTTTCTATGAAGTCAT+TGG 0.396607 4.2:-40908489 MS.gene071189:CDS
GCCGAGAGAGTCCAGGAGAC+AGG 0.397232 4.2:-40907313 MS.gene071189:CDS
CTTCTAAAAGAAGGAACAAA+AGG 0.397285 4.2:+40908117 None:intergenic
GGCCAGAGACATACAGGAAA+TGG 0.403238 4.2:-40906856 MS.gene071189:CDS
TCGCTAGATTCAAAATTGTA+TGG 0.404227 4.2:+40907485 None:intergenic
TCTGTAGCATTGTTTGGAGC+TGG 0.404262 4.2:+40908648 None:intergenic
TTGTGGTGAATTCTGTTTGT+CGG 0.410916 4.2:-40907174 MS.gene071189:CDS
GACAGGCTTCAATATACATT+TGG 0.411821 4.2:+40907539 None:intergenic
GCAGGCCTGAAGCCAGGTTG+GGG 0.414806 4.2:+40907334 None:intergenic
AAGGGAGGTTCAGGAGGTAG+TGG 0.418003 4.2:-40908097 MS.gene071189:CDS
TTTATACATACTACTGTCAA+TGG 0.418864 4.2:-40907064 MS.gene071189:CDS
CAATGCTATTGCACAGAAAT+GGG 0.422432 4.2:-40907242 MS.gene071189:CDS
AAGGCAATATTCTTCTCCAT+TGG 0.423667 4.2:-40907692 MS.gene071189:CDS
GCAATAGCATTGAACTCAAA+TGG 0.428641 4.2:+40907253 None:intergenic
GTCTCCTGGACTCTCTCGGC+AGG 0.430954 4.2:+40907316 None:intergenic
TTGAACCGTGTCGCAAAGAA+TGG 0.433149 4.2:+40907028 None:intergenic
GTAGTATGTATAAAGATATT+GGG 0.433213 4.2:+40907073 None:intergenic
AGGAGGAAGCGTAAATTATT+CGG 0.433733 4.2:+40906687 None:intergenic
CTACTGTTAAAACTATCATC+AGG 0.434770 4.2:+40908438 None:intergenic
GCATCCGTTACGGCTTTCAA+TGG 0.436217 4.2:-40907429 MS.gene071189:CDS
CCTCCTAAGCTGCTCTTGAC+AGG 0.440626 4.2:-40907367 MS.gene071189:CDS
AATTTACGCTTCCTCCTGTT+GGG 0.441011 4.2:-40906681 MS.gene071189:CDS
CTAGGCGAAGCCCTGTCTCC+TGG 0.442369 4.2:+40907302 None:intergenic
TAATTTCAAAACAGCATCCC+TGG 0.447641 4.2:+40907111 None:intergenic
TGTTGCCTTGTTTCTTACCT+CGG 0.450630 4.2:+40907812 None:intergenic
TGCAAGCTTCTTGAATGGAC+AGG 0.451062 4.2:+40907522 None:intergenic
CTCTCGGCAGGCCTGAAGCC+AGG 0.453760 4.2:+40907328 None:intergenic
GATGTTTGAGAAAGAGTTCT+GGG 0.455142 4.2:-40906930 MS.gene071189:CDS
AGGCAATATTCTTCTCCATT+GGG 0.457992 4.2:-40907691 MS.gene071189:CDS
TCGAGAGGCCAGAGACATAC+AGG 0.459712 4.2:-40906862 MS.gene071189:CDS
ATCCCTGTCAAGAGCAGCTT+AGG 0.460560 4.2:+40907364 None:intergenic
GTCCTATGCAGGTACCCAAC+AGG 0.461795 4.2:+40906667 None:intergenic
AGAAAGGAAGAGAAGGCTAA+TGG 0.462372 4.2:-40907892 MS.gene071189:CDS
ATTCTTTGCGACACGGTTCA+AGG 0.463902 4.2:-40907026 MS.gene071189:CDS
AGTAGCGATTTCGGTGTAAC+CGG 0.469350 4.2:-40908279 MS.gene071189:CDS
TTTCAAGCTAGTTCAATGAA+TGG 0.469664 4.2:-40908318 MS.gene071189:CDS
AGAAGAAGAAGATTCACCTT+TGG 0.473696 4.2:-40908628 MS.gene071189:CDS
CATACAGGAAATGGAAGGTT+CGG 0.475232 4.2:-40906847 MS.gene071189:CDS
TGAACCGTGTCGCAAAGAAT+GGG 0.479940 4.2:+40907029 None:intergenic
ATGAATGCAAGCTTCTTGAA+TGG 0.481139 4.2:+40907517 None:intergenic
TAATTTACGCTTCCTCCTGT+TGG 0.482014 4.2:-40906682 MS.gene071189:CDS
TTCAGGAGGTAGTGGTTGAG+AGG 0.482313 4.2:-40908089 MS.gene071189:CDS
TCAGGGCTTTGTACAGAAGA+AGG 0.485059 4.2:+40908456 None:intergenic
GCTCTAGAAGCACGCATGGC+TGG 0.493848 4.2:-40907631 MS.gene071189:CDS
GAAGCACGCATGGCTGGTAC+TGG 0.498249 4.2:-40907625 MS.gene071189:CDS
TGGATTTAAGCAACTCCCCT+TGG 0.498423 4.2:-40906813 MS.gene071189:CDS
GATTTCGGTGTAACCGGTGG+TGG 0.506809 4.2:-40908273 MS.gene071189:CDS
TCAGGAGGTAGTGGTTGAGA+GGG 0.507729 4.2:-40908088 MS.gene071189:CDS
CAGGCCTGCCGAGAGAGTCC+AGG 0.510078 4.2:-40907320 MS.gene071189:CDS
GATAAACGATAAATAAGGGC+AGG 0.512065 4.2:+40907406 None:intergenic
ATGAGTTATTGAGGCAGATA+AGG 0.512815 4.2:-40907711 MS.gene071189:CDS
CTCTTCAAATCAACAACCAA+TGG 0.512943 4.2:+40908144 None:intergenic
TTATACATACTACTGTCAAT+GGG 0.515737 4.2:-40907063 MS.gene071189:CDS
CTGCATGCTGCAAGGATGGA+AGG 0.517952 4.2:-40906711 MS.gene071189:CDS
CTCCTGTTGGGTACCTGCAT+AGG 0.518592 4.2:-40906669 None:intergenic
GCTATCGGAGCTGTTTGATA+AGG 0.519129 4.2:-40907935 MS.gene071189:CDS
GGGGAGGAAGAATCACGAGC+GGG 0.521175 4.2:-40908028 MS.gene071189:CDS
GAAAGGAAGAGAAGGCTAAT+GGG 0.521362 4.2:-40907891 MS.gene071189:CDS
AAGAAACTCTGCTGCCGACA+TGG 0.522015 4.2:-40907572 MS.gene071189:CDS
AACGTTCACAATACCTTGCT+AGG 0.524003 4.2:+40907284 None:intergenic
CCGAGAGAGTCCAGGAGACA+GGG 0.524887 4.2:-40907312 MS.gene071189:CDS
CAGGCCTGAAGCCAGGTTGG+GGG 0.525521 4.2:+40907335 None:intergenic
ATCATTGCCAAGTCCTATGC+AGG 0.526668 4.2:+40906656 None:intergenic
TGATGATGACAGTGAGCTAT+CGG 0.527539 4.2:-40907950 MS.gene071189:CDS
TGAACCTCCCTTCTAAAAGA+AGG 0.528231 4.2:+40908108 None:intergenic
TATTCTTCTCCATTGGGTGA+TGG 0.529010 4.2:-40907685 MS.gene071189:CDS
ATCGTTTATCAAAACGACCT+GGG 0.530234 4.2:-40907393 MS.gene071189:CDS
GAAGCAAATAATTCTGGTGG+TGG 0.534103 4.2:-40907841 MS.gene071189:CDS
TGATAAGGTGCTGCTTGGAA+CGG 0.538662 4.2:-40907920 MS.gene071189:CDS
GAAACTGCATGCTGCAAGGA+TGG 0.539727 4.2:-40906715 MS.gene071189:CDS
CTGTTTGATAAGGTGCTGCT+TGG 0.542358 4.2:-40907925 MS.gene071189:CDS
GAGAAATCAATTTCATCCAA+AGG 0.543170 4.2:+40908612 None:intergenic
GCTTGGAACGGGGTGCAGAA+AGG 0.543390 4.2:-40907908 MS.gene071189:CDS
TCTGCCTAAAGTGAATCCAT+TGG 0.544272 4.2:-40908160 MS.gene071189:CDS
CCCTGTCTCCTGGACTCTCT+CGG 0.545286 4.2:+40907312 None:intergenic
TTAATGAGATGTTTATCCAA+GGG 0.545301 4.2:+40906797 None:intergenic
GTTAATGAGATGTTTATCCA+AGG 0.545722 4.2:+40906796 None:intergenic
CAGTAGTAGTAATTCTGTTG+AGG 0.547986 4.2:-40908421 MS.gene071189:CDS
CCTGTCAAGAGCAGCTTAGG+AGG 0.549308 4.2:+40907367 None:intergenic
CAGTTGTGTTGAATAGTCCC+AGG 0.555999 4.2:-40907129 MS.gene071189:CDS
ACCGGTGGTGGATTTAGGGA+TGG 0.556953 4.2:-40908261 MS.gene071189:CDS
GGGTGATGGATCTCAGAGGC+TGG 0.557398 4.2:-40907671 MS.gene071189:CDS
AAGGTTCGGAATATAAGGGC+TGG 0.559644 4.2:-40906833 MS.gene071189:CDS
GCAATTTGAGAGGGGTGTGG+AGG 0.561220 4.2:-40908196 MS.gene071189:CDS
ATGGAAGGTTCGGAATATAA+GGG 0.563303 4.2:-40906837 MS.gene071189:CDS
TTCTAAAAGAAGGAACAAAA+GGG 0.563412 4.2:+40908118 None:intergenic
ATGAATATTATAGCTTGTGA+AGG 0.563558 4.2:-40906896 MS.gene071189:CDS
TATCGTTTATCAAAACGACC+TGG 0.572065 4.2:-40907394 MS.gene071189:CDS
CTCCTAAGCTGCTCTTGACA+GGG 0.575690 4.2:-40907366 MS.gene071189:CDS
AGGCAACAAGAAGGGTGTTG+TGG 0.575933 4.2:-40907797 MS.gene071189:CDS
TGCATGCTGCAAGGATGGAA+GGG 0.578283 4.2:-40906710 MS.gene071189:CDS
AATTTCAAAACAGCATCCCT+GGG 0.578395 4.2:+40907112 None:intergenic
TCGTTTATCAAAACGACCTG+GGG 0.584413 4.2:-40907392 MS.gene071189:CDS
ATGCCCCATTCTTTGCGACA+CGG 0.584723 4.2:-40907033 MS.gene071189:CDS
GGGAGGAAGAATCACGAGCG+GGG 0.584989 4.2:-40908027 MS.gene071189:CDS
AGTCTGTATTGCAATTTGAG+AGG 0.585618 4.2:-40908206 MS.gene071189:CDS
AGACAGGGCTTCGCCTAGCA+AGG 0.589816 4.2:-40907297 MS.gene071189:CDS
TGTTTGAGAAAGAGTTCTGG+GGG 0.594182 4.2:-40906928 MS.gene071189:CDS
ATGGGAAACCATCAAAGTTG+AGG 0.594978 4.2:-40907224 MS.gene071189:CDS
TACTGTTAAAACTATCATCA+GGG 0.596236 4.2:+40908439 None:intergenic
AAGAAACAAGGCAACAAGAA+GGG 0.596770 4.2:-40907805 MS.gene071189:CDS
ATTGCAATTTGAGAGGGGTG+TGG 0.597668 4.2:-40908199 MS.gene071189:CDS
TTGGTACGCTTTCACCATGT+CGG 0.598816 4.2:+40907558 None:intergenic
TCCATCCCTAAATCCACCAC+CGG 0.599728 4.2:+40908260 None:intergenic
CAAATGCTAATGAGTTATTG+AGG 0.600348 4.2:-40907720 MS.gene071189:CDS
GTCTGTATTGCAATTTGAGA+GGG 0.601880 4.2:-40908205 MS.gene071189:CDS
CAGGGCTTTGTACAGAAGAA+GGG 0.601972 4.2:+40908457 None:intergenic
CAGGCCATTGAAAGCCGTAA+CGG 0.602915 4.2:+40907425 None:intergenic
TAAGAAACAAGGCAACAAGA+AGG 0.603179 4.2:-40907806 MS.gene071189:CDS
AGCTTGTGAAGGTTCTCAGA+GGG 0.603648 4.2:-40906885 MS.gene071189:CDS
AATGCTTATGGAAGAAGACA+TGG 0.605099 4.2:-40908562 MS.gene071189:CDS
AGGGTTATCCATAAATCCAA+AGG 0.611812 4.2:+40908680 None:intergenic
GAAGAAGCAAATAATTCTGG+TGG 0.623065 4.2:-40907844 MS.gene071189:CDS
TAATGAGATGTTTATCCAAG+GGG 0.623159 4.2:+40906798 None:intergenic
GTTAATGTAACGAAGAACAG+TGG 0.624527 4.2:+40908587 None:intergenic
AGCGATTTCGGTGTAACCGG+TGG 0.625322 4.2:-40908276 MS.gene071189:CDS
GAATGCTCTAGAAGCACGCA+TGG 0.632297 4.2:-40907635 MS.gene071189:CDS
AATGAATCATGAAACATACA+TGG 0.637630 4.2:+40908531 None:intergenic
AAGAGCCGAGGTAAGAAACA+AGG 0.639801 4.2:-40907817 MS.gene071189:CDS
GGAAGAGAAGGCTAATGGGT+CGG 0.641207 4.2:-40907887 MS.gene071189:CDS
ATGTTTGAGAAAGAGTTCTG+GGG 0.644129 4.2:-40906929 MS.gene071189:CDS
GAACCGTGTCGCAAAGAATG+GGG 0.648096 4.2:+40907030 None:intergenic
GGGGTGCAGAAAGGAAGAGA+AGG 0.651471 4.2:-40907899 MS.gene071189:CDS
GATGGAAACTGCATGCTGCA+AGG 0.652853 4.2:-40906719 MS.gene071189:CDS
CTTTGCGACACGGTTCAAGG+AGG 0.657665 4.2:-40907023 MS.gene071189:CDS
AAGGTTCTCAGAGGGTCGAG+AGG 0.658012 4.2:-40906877 MS.gene071189:CDS
TGTGGATCTAAGGACAATGT+TGG 0.660423 4.2:-40907779 MS.gene071189:CDS
AGTTGTGTTGAATAGTCCCA+GGG 0.661922 4.2:-40907128 MS.gene071189:CDS
CTCTGAGATCCATCACCCAA+TGG 0.662757 4.2:+40907676 None:intergenic
AGAGACATACAGGAAATGGA+AGG 0.664271 4.2:-40906852 MS.gene071189:CDS
CATTGGGTGATGGATCTCAG+AGG 0.665660 4.2:-40907675 MS.gene071189:CDS
ATAAGGTGCTGCTTGGAACG+GGG 0.670615 4.2:-40907918 MS.gene071189:CDS
TCTGGTGGTGGAAAGAGCCG+AGG 0.679483 4.2:-40907829 MS.gene071189:CDS
GGATGCCAAAATCTACAATG+TGG 0.681308 4.2:+40907446 None:intergenic
CTATGCAGGTACCCAACAGG+AGG 0.684912 4.2:+40906670 None:intergenic
TAGCTTGTGAAGGTTCTCAG+AGG 0.697926 4.2:-40906886 MS.gene071189:CDS
CGTTTATCAAAACGACCTGG+GGG 0.713845 4.2:-40907391 MS.gene071189:CDS
TCTGTATTGCAATTTGAGAG+GGG 0.714329 4.2:-40908204 MS.gene071189:CDS
TTGCTCGTGAAGATCAAACG+AGG 0.754863 4.2:-40906955 MS.gene071189:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATAAACGATAAATAA+GGG + chr4.2:40907961-40907980 None:intergenic 15.0%
!! AGTAGTATGTATAAAGATAT+TGG + chr4.2:40908291-40908310 None:intergenic 20.0%
!! GTAGTATGTATAAAGATATT+GGG + chr4.2:40908290-40908309 None:intergenic 20.0%
!!! ATGCTGTTTTGAAATTAATT+AGG - chr4.2:40908255-40908274 MS.gene071189:CDS 20.0%
!!! GTTTTGATAAACGATAAATA+AGG + chr4.2:40907962-40907981 None:intergenic 20.0%
!!! TGCTGTTTTGAAATTAATTA+GGG - chr4.2:40908256-40908275 MS.gene071189:CDS 20.0%
! AAACAAAATCAACAGGAAAA+TGG + chr4.2:40907023-40907042 None:intergenic 25.0%
! AAAGAAAAATGAACTTCTTG+TGG - chr4.2:40908169-40908188 MS.gene071189:CDS 25.0%
! AAAGAAGAAGCAAATAATTC+TGG - chr4.2:40907513-40907532 MS.gene071189:CDS 25.0%
! AAATCTTTCTATGAAGTCAT+TGG - chr4.2:40906871-40906890 MS.gene071189:CDS 25.0%
! AACAAAATCAACAGGAAAAT+GGG + chr4.2:40907022-40907041 None:intergenic 25.0%
! AATGAATCATGAAACATACA+TGG + chr4.2:40906832-40906851 None:intergenic 25.0%
! ATGTATGTTTCATGATTCAT+TGG - chr4.2:40906831-40906850 MS.gene071189:CDS 25.0%
! TACTGTTAAAACTATCATCA+GGG + chr4.2:40906924-40906943 None:intergenic 25.0%
! TTAATGAGATGTTTATCCAA+GGG + chr4.2:40908566-40908585 None:intergenic 25.0%
! TTACATTAACCAAATGCTTA+TGG - chr4.2:40906786-40906805 MS.gene071189:CDS 25.0%
! TTATACATACTACTGTCAAT+GGG - chr4.2:40908297-40908316 MS.gene071189:CDS 25.0%
! TTTATACATACTACTGTCAA+TGG - chr4.2:40908296-40908315 MS.gene071189:CDS 25.0%
!! ATGAATATTATAGCTTGTGA+AGG - chr4.2:40908464-40908483 MS.gene071189:CDS 25.0%
!! TTCTAAAAGAAGGAACAAAA+GGG + chr4.2:40907245-40907264 None:intergenic 25.0%
!!! TTTTGTTCCTTCTTTTAGAA+GGG - chr4.2:40907245-40907264 MS.gene071189:CDS 25.0%
CAAATGCTAATGAGTTATTG+AGG - chr4.2:40907640-40907659 MS.gene071189:CDS 30.0%
CTACTGTTAAAACTATCATC+AGG + chr4.2:40906925-40906944 None:intergenic 30.0%
GAGAAATCAATTTCATCCAA+AGG + chr4.2:40906751-40906770 None:intergenic 30.0%
GCTTGAAAAACAAAATCAAC+AGG + chr4.2:40907030-40907049 None:intergenic 30.0%
GTTAATGAGATGTTTATCCA+AGG + chr4.2:40908567-40908586 None:intergenic 30.0%
TAATGAGATGTTTATCCAAG+GGG + chr4.2:40908565-40908584 None:intergenic 30.0%
TCGCTAGATTCAAAATTGTA+TGG + chr4.2:40907878-40907897 None:intergenic 30.0%
TTACTAAGCAAGTTTGAATC+AGG + chr4.2:40907129-40907148 None:intergenic 30.0%
TTTCAAGCTAGTTCAATGAA+TGG - chr4.2:40907042-40907061 MS.gene071189:CDS 30.0%
! AAATGGGTTTGCAATATAGA+AGG + chr4.2:40907006-40907025 None:intergenic 30.0%
! CTTCTAAAAGAAGGAACAAA+AGG + chr4.2:40907246-40907265 None:intergenic 30.0%
! CTTTTGTTCCTTCTTTTAGA+AGG - chr4.2:40907244-40907263 MS.gene071189:CDS 30.0%
! TACAATTTTGAATCTAGCGA+AGG - chr4.2:40907878-40907897 MS.gene071189:CDS 30.0%
!! GATTTTATGCTTGTTGAAGA+TGG - chr4.2:40908623-40908642 MS.gene071189:CDS 30.0%
AAGAAACAAGGCAACAAGAA+GGG - chr4.2:40907555-40907574 MS.gene071189:CDS 35.0%
AAGGCAATATTCTTCTCCAT+TGG - chr4.2:40907668-40907687 MS.gene071189:CDS 35.0%
AATGCTTATGGAAGAAGACA+TGG - chr4.2:40906798-40906817 MS.gene071189:CDS 35.0%
AATGGAAGGTTCGGAATATA+AGG - chr4.2:40908522-40908541 MS.gene071189:CDS 35.0%
AATTTCAAAACAGCATCCCT+GGG + chr4.2:40908251-40908270 None:intergenic 35.0%
AGAAGAAGAAGATTCACCTT+TGG - chr4.2:40906732-40906751 MS.gene071189:CDS 35.0%
AGGCAATATTCTTCTCCATT+GGG - chr4.2:40907669-40907688 MS.gene071189:CDS 35.0%
AGGGTTATCCATAAATCCAA+AGG + chr4.2:40906683-40906702 None:intergenic 35.0%
AGTAATAGCAGTAGCGATTT+CGG - chr4.2:40907072-40907091 MS.gene071189:CDS 35.0%
AGTCTGTATTGCAATTTGAG+AGG - chr4.2:40907154-40907173 MS.gene071189:CDS 35.0%
ATCGTTTATCAAAACGACCT+GGG - chr4.2:40907967-40907986 MS.gene071189:CDS 35.0%
ATGAATGCAAGCTTCTTGAA+TGG + chr4.2:40907846-40907865 None:intergenic 35.0%
ATGAGTTATTGAGGCAGATA+AGG - chr4.2:40907649-40907668 MS.gene071189:CDS 35.0%
ATGGAAGGTTCGGAATATAA+GGG - chr4.2:40908523-40908542 MS.gene071189:CDS 35.0%
ATGTTTGAGAAAGAGTTCTG+GGG - chr4.2:40908431-40908450 MS.gene071189:CDS 35.0%
CAATGCTATTGCACAGAAAT+GGG - chr4.2:40908118-40908137 MS.gene071189:CDS 35.0%
CAGTAGTAGTAATTCTGTTG+AGG - chr4.2:40906939-40906958 MS.gene071189:CDS 35.0%
CTCTTCAAATCAACAACCAA+TGG + chr4.2:40907219-40907238 None:intergenic 35.0%
GAAGAAGCAAATAATTCTGG+TGG - chr4.2:40907516-40907535 MS.gene071189:CDS 35.0%
GACAGGCTTCAATATACATT+TGG + chr4.2:40907824-40907843 None:intergenic 35.0%
GATAAACGATAAATAAGGGC+AGG + chr4.2:40907957-40907976 None:intergenic 35.0%
GATGTTTGAGAAAGAGTTCT+GGG - chr4.2:40908430-40908449 MS.gene071189:CDS 35.0%
GTCTGTATTGCAATTTGAGA+GGG - chr4.2:40907155-40907174 MS.gene071189:CDS 35.0%
GTTAATGTAACGAAGAACAG+TGG + chr4.2:40906776-40906795 None:intergenic 35.0%
TAAGAAACAAGGCAACAAGA+AGG - chr4.2:40907554-40907573 MS.gene071189:CDS 35.0%
TAATTTCAAAACAGCATCCC+TGG + chr4.2:40908252-40908271 None:intergenic 35.0%
TATCGTTTATCAAAACGACC+TGG - chr4.2:40907966-40907985 MS.gene071189:CDS 35.0%
TCAATGCTATTGCACAGAAA+TGG - chr4.2:40908117-40908136 MS.gene071189:CDS 35.0%
TCTGTATTGCAATTTGAGAG+GGG - chr4.2:40907156-40907175 MS.gene071189:CDS 35.0%
TCTTCTTCTGTAGCATTGTT+TGG + chr4.2:40906721-40906740 None:intergenic 35.0%
TGATGTTTGAGAAAGAGTTC+TGG - chr4.2:40908429-40908448 MS.gene071189:CDS 35.0%
TGTCTTCTTCCATAAGCATT+TGG + chr4.2:40906798-40906817 None:intergenic 35.0%
TTGGAGCTGGTTGAAAAAAA+GGG + chr4.2:40906702-40906721 None:intergenic 35.0%
TTGTGGTGAATTCTGTTTGT+CGG - chr4.2:40908186-40908205 MS.gene071189:CDS 35.0%
! ACAACCAATGGATTCACTTT+AGG + chr4.2:40907207-40907226 None:intergenic 35.0%
! ACTCTCCACATTGTAGATTT+TGG - chr4.2:40907909-40907928 MS.gene071189:CDS 35.0%
! AGGAGGAAGCGTAAATTATT+CGG + chr4.2:40908676-40908695 None:intergenic 35.0%
! GCAATAGCATTGAACTCAAA+TGG + chr4.2:40908110-40908129 None:intergenic 35.0%
! TTTGGAGCTGGTTGAAAAAA+AGG + chr4.2:40906703-40906722 None:intergenic 35.0%
AACGTTCACAATACCTTGCT+AGG + chr4.2:40908079-40908098 None:intergenic 40.0%
AATTTACGCTTCCTCCTGTT+GGG - chr4.2:40908679-40908698 MS.gene071189:CDS 40.0%
AGAAAGGAAGAGAAGGCTAA+TGG - chr4.2:40907468-40907487 MS.gene071189:CDS 40.0%
AGAGACATACAGGAAATGGA+AGG - chr4.2:40908508-40908527 MS.gene071189:CDS 40.0%
AGTTGTGTTGAATAGTCCCA+GGG - chr4.2:40908232-40908251 MS.gene071189:CDS 40.0%
ATGGGAAACCATCAAAGTTG+AGG - chr4.2:40908136-40908155 MS.gene071189:CDS 40.0%
CATACAGGAAATGGAAGGTT+CGG - chr4.2:40908513-40908532 MS.gene071189:CDS 40.0%
CTTCAAGTCCTCAACTTTGA+TGG + chr4.2:40908147-40908166 None:intergenic 40.0%
GAAAGGAAGAGAAGGCTAAT+GGG - chr4.2:40907469-40907488 MS.gene071189:CDS 40.0%
GAAGCAAATAATTCTGGTGG+TGG - chr4.2:40907519-40907538 MS.gene071189:CDS 40.0%
GGATCACACCTTTGGATTTA+TGG - chr4.2:40906672-40906691 MS.gene071189:CDS 40.0%
GGATGCCAAAATCTACAATG+TGG + chr4.2:40907917-40907936 None:intergenic 40.0%
TAATTTACGCTTCCTCCTGT+TGG - chr4.2:40908678-40908697 MS.gene071189:CDS 40.0%
TATTCTTCTCCATTGGGTGA+TGG - chr4.2:40907675-40907694 MS.gene071189:CDS 40.0%
TCGTTTATCAAAACGACCTG+GGG - chr4.2:40907968-40907987 MS.gene071189:CDS 40.0%
TCTGCCTAAAGTGAATCCAT+TGG - chr4.2:40907200-40907219 MS.gene071189:CDS 40.0%
TGTGGATCTAAGGACAATGT+TGG - chr4.2:40907581-40907600 MS.gene071189:CDS 40.0%
TTCCATTTCCTGTATGTCTC+TGG + chr4.2:40908509-40908528 None:intergenic 40.0%
! TGAACCTCCCTTCTAAAAGA+AGG + chr4.2:40907255-40907274 None:intergenic 40.0%
! TGATGATGACAGTGAGCTAT+CGG - chr4.2:40907410-40907429 MS.gene071189:CDS 40.0%
! TGTTTGAGAAAGAGTTCTGG+GGG - chr4.2:40908432-40908451 MS.gene071189:CDS 40.0%
!! GTAGATTTTGGCATCCGTTA+CGG - chr4.2:40907921-40907940 MS.gene071189:CDS 40.0%
!! TGTTCCTTCTTTTAGAAGGG+AGG - chr4.2:40907248-40907267 MS.gene071189:CDS 40.0%
!! TGTTGCCTTGTTTCTTACCT+CGG + chr4.2:40907551-40907570 None:intergenic 40.0%
!! TTCTTTTAGAAGGGAGGTTC+AGG - chr4.2:40907254-40907273 MS.gene071189:CDS 40.0%
AAGAGCCGAGGTAAGAAACA+AGG - chr4.2:40907543-40907562 MS.gene071189:CDS 45.0%
AAGGTTCGGAATATAAGGGC+TGG - chr4.2:40908527-40908546 MS.gene071189:CDS 45.0%
AGCTTGTGAAGGTTCTCAGA+GGG - chr4.2:40908475-40908494 MS.gene071189:CDS 45.0%
ATTCTTTGCGACACGGTTCA+AGG - chr4.2:40908334-40908353 MS.gene071189:CDS 45.0%
ATTGCAATTTGAGAGGGGTG+TGG - chr4.2:40907161-40907180 MS.gene071189:CDS 45.0%
CAGTTGTGTTGAATAGTCCC+AGG - chr4.2:40908231-40908250 MS.gene071189:CDS 45.0%
CGTTTATCAAAACGACCTGG+GGG - chr4.2:40907969-40907988 MS.gene071189:CDS 45.0%
GCTATCGGAGCTGTTTGATA+AGG - chr4.2:40907425-40907444 MS.gene071189:CDS 45.0%
TGAACCGTGTCGCAAAGAAT+GGG + chr4.2:40908334-40908353 None:intergenic 45.0%
TGCAAGCTTCTTGAATGGAC+AGG + chr4.2:40907841-40907860 None:intergenic 45.0%
TGGATTTAAGCAACTCCCCT+TGG - chr4.2:40908547-40908566 MS.gene071189:CDS 45.0%
TTGAACCGTGTCGCAAAGAA+TGG + chr4.2:40908335-40908354 None:intergenic 45.0%
TTGCTCGTGAAGATCAAACG+AGG - chr4.2:40908405-40908424 MS.gene071189:CDS 45.0%
TTGGTACGCTTTCACCATGT+CGG + chr4.2:40907805-40907824 None:intergenic 45.0%
! AGTAGCGATTTCGGTGTAAC+CGG - chr4.2:40907081-40907100 MS.gene071189:CDS 45.0%
! CAGGGCTTTGTACAGAAGAA+GGG + chr4.2:40906906-40906925 None:intergenic 45.0%
! TAGCTTGTGAAGGTTCTCAG+AGG - chr4.2:40908474-40908493 MS.gene071189:CDS 45.0%
! TCAGGGCTTTGTACAGAAGA+AGG + chr4.2:40906907-40906926 None:intergenic 45.0%
! TCTGTAGCATTGTTTGGAGC+TGG + chr4.2:40906715-40906734 None:intergenic 45.0%
!! AACGTTTTTCAGCTGAGTCG+AGG - chr4.2:40907310-40907329 MS.gene071189:CDS 45.0%
!! ACGTTTTTCAGCTGAGTCGA+GGG - chr4.2:40907311-40907330 MS.gene071189:CDS 45.0%
!! AGAAGGGTGTTGTGGATCTA+AGG - chr4.2:40907571-40907590 MS.gene071189:CDS 45.0%
!! CTGTTTGATAAGGTGCTGCT+TGG - chr4.2:40907435-40907454 MS.gene071189:CDS 45.0%
!! TGATAAGGTGCTGCTTGGAA+CGG - chr4.2:40907440-40907459 MS.gene071189:CDS 45.0%
!! TGTAACCGGTGGTGGATTTA+GGG - chr4.2:40907095-40907114 MS.gene071189:CDS 45.0%
!! TTTTAGAAGGGAGGTTCAGG+AGG - chr4.2:40907257-40907276 MS.gene071189:CDS 45.0%
AAGAAACTCTGCTGCCGACA+TGG - chr4.2:40907788-40907807 MS.gene071189:CDS 50.0%
ATCCCTGTCAAGAGCAGCTT+AGG + chr4.2:40907999-40908018 None:intergenic 50.0%
ATGCCCCATTCTTTGCGACA+CGG - chr4.2:40908327-40908346 MS.gene071189:CDS 50.0%
CAGGCCATTGAAAGCCGTAA+CGG + chr4.2:40907938-40907957 None:intergenic 50.0%
CTCCTAAGCTGCTCTTGACA+GGG - chr4.2:40907994-40908013 MS.gene071189:CDS 50.0%
GAAACTGCATGCTGCAAGGA+TGG - chr4.2:40908645-40908664 MS.gene071189:CDS 50.0%
GAACCGTGTCGCAAAGAATG+GGG + chr4.2:40908333-40908352 None:intergenic 50.0%
GATGGAAACTGCATGCTGCA+AGG - chr4.2:40908641-40908660 MS.gene071189:CDS 50.0%
GCATCCGTTACGGCTTTCAA+TGG - chr4.2:40907931-40907950 MS.gene071189:CDS 50.0%
GGCCAGAGACATACAGGAAA+TGG - chr4.2:40908504-40908523 MS.gene071189:CDS 50.0%
TCCATCCCTAAATCCACCAC+CGG + chr4.2:40907103-40907122 None:intergenic 50.0%
TGCATGCTGCAAGGATGGAA+GGG - chr4.2:40908650-40908669 MS.gene071189:CDS 50.0%
! GGAAGAGAAGGCTAATGGGT+CGG - chr4.2:40907473-40907492 MS.gene071189:CDS 50.0%
! GTCGGCAGCAGAGTTTCTTT+TGG + chr4.2:40907787-40907806 None:intergenic 50.0%
! TCAGGAGGTAGTGGTTGAGA+GGG - chr4.2:40907272-40907291 MS.gene071189:CDS 50.0%
! TTCAGGAGGTAGTGGTTGAG+AGG - chr4.2:40907271-40907290 MS.gene071189:CDS 50.0%
!! AGGCAACAAGAAGGGTGTTG+TGG - chr4.2:40907563-40907582 MS.gene071189:CDS 50.0%
!! ATAAGGTGCTGCTTGGAACG+GGG - chr4.2:40907442-40907461 MS.gene071189:CDS 50.0%
!! CATTGGGTGATGGATCTCAG+AGG - chr4.2:40907685-40907704 MS.gene071189:CDS 50.0%
!! CGTTTTTCAGCTGAGTCGAG+GGG - chr4.2:40907312-40907331 MS.gene071189:CDS 50.0%
!! CTCTGAGATCCATCACCCAA+TGG + chr4.2:40907687-40907706 None:intergenic 50.0%
!! GAATGCTCTAGAAGCACGCA+TGG - chr4.2:40907725-40907744 MS.gene071189:CDS 50.0%
!! GATAAGGTGCTGCTTGGAAC+GGG - chr4.2:40907441-40907460 MS.gene071189:CDS 50.0%
!! GTGTAACCGGTGGTGGATTT+AGG - chr4.2:40907094-40907113 MS.gene071189:CDS 50.0%
!! GTTTTTCAGCTGAGTCGAGG+GGG - chr4.2:40907313-40907332 MS.gene071189:CDS 50.0%
!! TGAGAAAGAGTTCTGGGGGA+GGG - chr4.2:40908436-40908455 MS.gene071189:CDS 50.0%
!! TTGAGAAAGAGTTCTGGGGG+AGG - chr4.2:40908435-40908454 MS.gene071189:CDS 50.0%
AAGGGAGGTTCAGGAGGTAG+TGG - chr4.2:40907263-40907282 MS.gene071189:CDS 55.0%
AAGGTTCTCAGAGGGTCGAG+AGG - chr4.2:40908483-40908502 MS.gene071189:CDS 55.0%
CCTCCTAAGCTGCTCTTGAC+AGG - chr4.2:40907993-40908012 MS.gene071189:CDS 55.0%
CCTGTCAAGAGCAGCTTAGG+AGG + chr4.2:40907996-40908015 None:intergenic 55.0%
CTATGCAGGTACCCAACAGG+AGG + chr4.2:40908693-40908712 None:intergenic 55.0%
CTGCATGCTGCAAGGATGGA+AGG - chr4.2:40908649-40908668 MS.gene071189:CDS 55.0%
CTTTGCGACACGGTTCAAGG+AGG - chr4.2:40908337-40908356 MS.gene071189:CDS 55.0%
GGGGTGCAGAAAGGAAGAGA+AGG - chr4.2:40907461-40907480 MS.gene071189:CDS 55.0%
TCGAGAGGCCAGAGACATAC+AGG - chr4.2:40908498-40908517 MS.gene071189:CDS 55.0%
! AGCGATTTCGGTGTAACCGG+TGG - chr4.2:40907084-40907103 MS.gene071189:CDS 55.0%
! GATTTCGGTGTAACCGGTGG+TGG - chr4.2:40907087-40907106 MS.gene071189:CDS 55.0%
! GCAATTTGAGAGGGGTGTGG+AGG - chr4.2:40907164-40907183 MS.gene071189:CDS 55.0%
!! ACCGGTGGTGGATTTAGGGA+TGG - chr4.2:40907099-40907118 MS.gene071189:CDS 55.0%
AACTCCCCCAACCTGGCTTC+AGG - chr4.2:40908021-40908040 MS.gene071189:CDS 60.0%
AGACAGGGCTTCGCCTAGCA+AGG - chr4.2:40908063-40908082 MS.gene071189:CDS 60.0%
CCCTGTCTCCTGGACTCTCT+CGG + chr4.2:40908051-40908070 None:intergenic 60.0%
CCGAGAGAGTCCAGGAGACA+GGG - chr4.2:40908048-40908067 MS.gene071189:CDS 60.0%
GAAGCACGCATGGCTGGTAC+TGG - chr4.2:40907735-40907754 MS.gene071189:CDS 60.0%
GCTTGGAACGGGGTGCAGAA+AGG - chr4.2:40907452-40907471 MS.gene071189:CDS 60.0%
GGGAGGAAGAATCACGAGCG+GGG - chr4.2:40907333-40907352 MS.gene071189:CDS 60.0%
GGGATAGAACTCCCCCAACC+TGG - chr4.2:40908014-40908033 MS.gene071189:CDS 60.0%
GGGGAGGAAGAATCACGAGC+GGG - chr4.2:40907332-40907351 MS.gene071189:CDS 60.0%
GGGGGAGGAAGAATCACGAG+CGG - chr4.2:40907331-40907350 MS.gene071189:CDS 60.0%
TTTCAGCTGAGTCGAGGGGG+AGG - chr4.2:40907316-40907335 MS.gene071189:CDS 60.0%
!! GCTCTAGAAGCACGCATGGC+TGG - chr4.2:40907729-40907748 MS.gene071189:CDS 60.0%
!! GGGTGATGGATCTCAGAGGC+TGG - chr4.2:40907689-40907708 MS.gene071189:CDS 60.0%
!! TCTGGTGGTGGAAAGAGCCG+AGG - chr4.2:40907531-40907550 MS.gene071189:CDS 60.0%
AGCAGCTTAGGAGGTCCCCC+AGG + chr4.2:40907987-40908006 None:intergenic 65.0%
CTAGGCGAAGCCCTGTCTCC+TGG + chr4.2:40908061-40908080 None:intergenic 65.0%
GCAGGCCTGAAGCCAGGTTG+GGG + chr4.2:40908029-40908048 None:intergenic 65.0%
GCCGAGAGAGTCCAGGAGAC+AGG - chr4.2:40908047-40908066 MS.gene071189:CDS 65.0%
GGCAGGCCTGAAGCCAGGTT+GGG + chr4.2:40908030-40908049 None:intergenic 65.0%
GTCTCCTGGACTCTCTCGGC+AGG + chr4.2:40908047-40908066 None:intergenic 65.0%
! CAGGCCTGAAGCCAGGTTGG+GGG + chr4.2:40908028-40908047 None:intergenic 65.0%
CAGGCCTGCCGAGAGAGTCC+AGG - chr4.2:40908040-40908059 MS.gene071189:CDS 70.0%
CGGCAGGCCTGAAGCCAGGT+TGG + chr4.2:40908031-40908050 None:intergenic 70.0%
CTCTCGGCAGGCCTGAAGCC+AGG + chr4.2:40908035-40908054 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 40906670 40908712 40906670 ID=MS.gene071189
chr4.2 mRNA 40906670 40908712 40906670 ID=MS.gene071189.t1;Parent=MS.gene071189
chr4.2 exon 40906670 40908712 40906670 ID=MS.gene071189.t1.exon1;Parent=MS.gene071189.t1
chr4.2 CDS 40906670 40908712 40906670 ID=cds.MS.gene071189.t1;Parent=MS.gene071189.t1
Gene Sequence

>MS.gene071189

ATGGATCACACCTTTGGATTTATGGATAACCCTTTTTTTCAACCAGCTCCAAACAATGCTACAGAAGAAGAAGATTCACCTTTGGATGAAATTGATTTCTCTTCCACTGTTCTTCGTTACATTAACCAAATGCTTATGGAAGAAGACATGGATATGAAACCATGTATGTTTCATGATTCATTGGCTTTACAAGCTGCTGAAAAATCTTTCTATGAAGTCATTGGTGAGACTTACCCTTCTTCTGTACAAAGCCCTGATGATAGTTTTAACAGTAGTAGTAATTCTGTTGAGGTTGAATCATATTTGAGTAATTTTGATGTTTCTGAGCATAATCCTTCTATATTGCAAACCCATTTTCCTGTTGATTTTGTTTTTCAAGCTAGTTCAATGAATGGTAGTAGTAGTAATAGCAGTAGCGATTTCGGTGTAACCGGTGGTGGATTTAGGGATGGATTTCCTGATTCAAACTTGCTTAGTAAGAATGAGTCTGTATTGCAATTTGAGAGGGGTGTGGAGGAAGCTAATAAGTTTCTGCCTAAAGTGAATCCATTGGTTGTTGATTTGAAGAGTAACCCTTTTGTTCCTTCTTTTAGAAGGGAGGTTCAGGAGGTAGTGGTTGAGAGGGAGAGCAATGAAAGAGAACGTTTTTCAGCTGAGTCGAGGGGGAGGAAGAATCACGAGCGGGGAGATGAATTGAGTTTACAAGATGAGAGAAGTAACAAACAATCAGCTGTTTATACTGATGATGACAGTGAGCTATCGGAGCTGTTTGATAAGGTGCTGCTTGGAACGGGGTGCAGAAAGGAAGAGAAGGCTAATGGGTCGGATACGAGCGTGCAGCAGAAAGAAGAAGCAAATAATTCTGGTGGTGGAAAGAGCCGAGGTAAGAAACAAGGCAACAAGAAGGGTGTTGTGGATCTAAGGACAATGTTGGTTCTATGTGCACAATATGTTTCTTCTGATGATCGTGCAAATGCTAATGAGTTATTGAGGCAGATAAGGCAATATTCTTCTCCATTGGGTGATGGATCTCAGAGGCTGGCACATTGCTTTGCGAATGCTCTAGAAGCACGCATGGCTGGTACTGGCACTCAGATTTATACTGCTTTATACTCCAAAAGAAACTCTGCTGCCGACATGGTGAAAGCGTACCAAATGTATATTGAAGCCTGTCCATTCAAGAAGCTTGCATTCATTTTCGCGAACCATACAATTTTGAATCTAGCGAAGGAAGTAGAAACTCTCCACATTGTAGATTTTGGCATCCGTTACGGCTTTCAATGGCCTGCCCTTATTTATCGTTTATCAAAACGACCTGGGGGACCTCCTAAGCTGCTCTTGACAGGGATAGAACTCCCCCAACCTGGCTTCAGGCCTGCCGAGAGAGTCCAGGAGACAGGGCTTCGCCTAGCAAGGTATTGTGAACGTTTTAATGTTCCATTTGAGTTCAATGCTATTGCACAGAAATGGGAAACCATCAAAGTTGAGGACTTGAAGATAAAGAAAAATGAACTTCTTGTGGTGAATTCTGTTTGTCGGCTTAAAAATTTACTTGACGAGACAGTTGTGTTGAATAGTCCCAGGGATGCTGTTTTGAAATTAATTAGGGACGCAAATCCCAATATCTTTATACATACTACTGTCAATGGGAGCTACAATGCCCCATTCTTTGCGACACGGTTCAAGGAGGCTCTTTTCAATTACTCTACAATGTTTGATGTGCTTGACATCAATGTTGCTCGTGAAGATCAAACGAGGTTGATGTTTGAGAAAGAGTTCTGGGGGAGGGAAGTAATGAATATTATAGCTTGTGAAGGTTCTCAGAGGGTCGAGAGGCCAGAGACATACAGGAAATGGAAGGTTCGGAATATAAGGGCTGGATTTAAGCAACTCCCCTTGGATAAACATCTCATTAACAAGTTAAGATGCAAGTTGAAAGATGTGTATCATAGTGATTTTATGCTTGTTGAAGATGGAAACTGCATGCTGCAAGGATGGAAGGGCCGAATAATTTACGCTTCCTCCTGTTGGGTACCTGCATAG
Protein sequence

>MS.gene071189.t1

MDHTFGFMDNPFFQPAPNNATEEEDSPLDEIDFSSTVLRYINQMLMEEDMDMKPCMFHDSLALQAAEKSFYEVIGETYPSSVQSPDDSFNSSSNSVEVESYLSNFDVSEHNPSILQTHFPVDFVFQASSMNGSSSNSSSDFGVTGGGFRDGFPDSNLLSKNESVLQFERGVEEANKFLPKVNPLVVDLKSNPFVPSFRREVQEVVVERESNERERFSAESRGRKNHERGDELSLQDERSNKQSAVYTDDDSELSELFDKVLLGTGCRKEEKANGSDTSVQQKEEANNSGGGKSRGKKQGNKKGVVDLRTMLVLCAQYVSSDDRANANELLRQIRQYSSPLGDGSQRLAHCFANALEARMAGTGTQIYTALYSKRNSAADMVKAYQMYIEACPFKKLAFIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLLLTGIELPQPGFRPAERVQETGLRLARYCERFNVPFEFNAIAQKWETIKVEDLKIKKNELLVVNSVCRLKNLLDETVVLNSPRDAVLKLIRDANPNIFIHTTVNGSYNAPFFATRFKEALFNYSTMFDVLDINVAREDQTRLMFEKEFWGREVMNIIACEGSQRVERPETYRKWKVRNIRAGFKQLPLDKHLINKLRCKLKDVYHSDFMLVEDGNCMLQGWKGRIIYASSCWVPA