Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071191.t1 | XP_003606667.1 | 93.3 | 628 | 42 | 0 | 1 | 628 | 1 | 628 | 0.00E+00 | 1167.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071191.t1 | Q9XE58 | 45.7 | 692 | 277 | 17 | 31 | 628 | 81 | 767 | 8.4e-151 | 535.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071191.t1 | G7JUT4 | 93.3 | 628 | 42 | 0 | 1 | 628 | 1 | 628 | 0.0e+00 | 1167.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene071191.t1 | TF | GRAS |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071191.t1 | MTR_4g064120 | 94.268 | 628 | 36 | 0 | 1 | 628 | 1 | 628 | 0.0 | 1216 |
MS.gene071191.t1 | MTR_4g064180 | 93.631 | 628 | 40 | 0 | 1 | 628 | 1 | 628 | 0.0 | 1207 |
MS.gene071191.t1 | MTR_4g064150 | 71.235 | 664 | 141 | 8 | 14 | 628 | 73 | 735 | 0.0 | 931 |
MS.gene071191.t1 | MTR_2g097410 | 54.883 | 727 | 218 | 12 | 2 | 628 | 27 | 743 | 0.0 | 763 |
MS.gene071191.t1 | MTR_4g064160 | 49.031 | 671 | 266 | 14 | 24 | 628 | 26 | 686 | 0.0 | 597 |
MS.gene071191.t1 | MTR_7g062120 | 44.152 | 684 | 294 | 17 | 26 | 628 | 66 | 742 | 0.0 | 540 |
MS.gene071191.t1 | MTR_2g097467 | 45.687 | 626 | 302 | 17 | 27 | 628 | 45 | 656 | 4.13e-171 | 503 |
MS.gene071191.t1 | MTR_2g097473 | 45.104 | 623 | 310 | 12 | 27 | 628 | 45 | 656 | 2.49e-170 | 500 |
MS.gene071191.t1 | MTR_2g097463 | 44.182 | 636 | 279 | 16 | 36 | 628 | 55 | 657 | 5.31e-167 | 492 |
MS.gene071191.t1 | MTR_4g064200 | 50.520 | 481 | 209 | 7 | 169 | 628 | 180 | 652 | 1.11e-164 | 486 |
MS.gene071191.t1 | MTR_2g097310 | 49.251 | 467 | 214 | 9 | 174 | 628 | 185 | 640 | 4.52e-153 | 456 |
MS.gene071191.t1 | MTR_2g097390 | 42.147 | 624 | 302 | 17 | 33 | 628 | 51 | 643 | 1.23e-152 | 454 |
MS.gene071191.t1 | MTR_2g097350 | 47.732 | 463 | 226 | 7 | 174 | 628 | 188 | 642 | 3.20e-148 | 443 |
MS.gene071191.t1 | MTR_2g097380 | 46.171 | 444 | 175 | 8 | 195 | 628 | 174 | 563 | 3.58e-129 | 392 |
MS.gene071191.t1 | MTR_2g082090 | 29.741 | 501 | 339 | 5 | 133 | 625 | 83 | 578 | 9.24e-70 | 237 |
MS.gene071191.t1 | MTR_3g056110 | 32.979 | 376 | 247 | 3 | 250 | 625 | 171 | 541 | 1.99e-63 | 219 |
MS.gene071191.t1 | MTR_5g097480 | 32.713 | 376 | 248 | 3 | 250 | 625 | 173 | 543 | 3.80e-63 | 218 |
MS.gene071191.t1 | MTR_4g133660 | 31.842 | 380 | 251 | 6 | 249 | 626 | 170 | 543 | 2.96e-62 | 216 |
MS.gene071191.t1 | MTR_7g027190 | 32.000 | 400 | 235 | 5 | 245 | 625 | 291 | 672 | 6.84e-60 | 212 |
MS.gene071191.t1 | MTR_5g094450 | 32.368 | 380 | 248 | 7 | 250 | 625 | 157 | 531 | 1.02e-58 | 206 |
MS.gene071191.t1 | MTR_1g029420 | 30.214 | 374 | 256 | 3 | 252 | 625 | 223 | 591 | 4.94e-58 | 205 |
MS.gene071191.t1 | MTR_2g026250 | 28.836 | 378 | 263 | 4 | 249 | 625 | 223 | 595 | 1.07e-55 | 199 |
MS.gene071191.t1 | MTR_3g089055 | 29.412 | 374 | 259 | 3 | 252 | 625 | 196 | 564 | 3.96e-55 | 197 |
MS.gene071191.t1 | MTR_3g089055 | 29.412 | 374 | 259 | 3 | 252 | 625 | 201 | 569 | 4.16e-55 | 197 |
MS.gene071191.t1 | MTR_3g065980 | 31.387 | 411 | 250 | 8 | 229 | 625 | 147 | 539 | 2.01e-54 | 194 |
MS.gene071191.t1 | MTR_8g442410 | 30.822 | 438 | 270 | 11 | 205 | 628 | 109 | 527 | 3.00e-54 | 194 |
MS.gene071191.t1 | MTR_4g104020 | 30.256 | 390 | 241 | 8 | 251 | 625 | 146 | 519 | 3.16e-54 | 193 |
MS.gene071191.t1 | MTR_7g074650 | 30.458 | 371 | 238 | 7 | 258 | 627 | 442 | 793 | 5.47e-50 | 186 |
MS.gene071191.t1 | MTR_5g009080 | 26.517 | 445 | 259 | 6 | 240 | 625 | 42 | 477 | 9.99e-49 | 177 |
MS.gene071191.t1 | MTR_4g076140 | 26.477 | 457 | 267 | 6 | 229 | 625 | 21 | 468 | 1.62e-48 | 176 |
MS.gene071191.t1 | MTR_3g022830 | 25.891 | 421 | 251 | 8 | 255 | 625 | 26 | 435 | 1.10e-41 | 157 |
MS.gene071191.t1 | MTR_4g102790 | 27.735 | 393 | 260 | 10 | 246 | 627 | 284 | 663 | 6.56e-41 | 158 |
MS.gene071191.t1 | MTR_4g097080 | 27.865 | 384 | 259 | 8 | 252 | 627 | 131 | 504 | 2.52e-39 | 151 |
MS.gene071191.t1 | MTR_2g034260 | 27.848 | 395 | 263 | 9 | 243 | 625 | 199 | 583 | 1.48e-38 | 150 |
MS.gene071191.t1 | MTR_4g076020 | 27.224 | 371 | 243 | 6 | 258 | 628 | 88 | 431 | 2.16e-38 | 147 |
MS.gene071191.t1 | MTR_2g089100 | 27.027 | 407 | 258 | 9 | 251 | 628 | 49 | 445 | 2.20e-38 | 148 |
MS.gene071191.t1 | MTR_2g034250 | 27.848 | 395 | 264 | 8 | 243 | 625 | 199 | 584 | 3.23e-37 | 147 |
MS.gene071191.t1 | MTR_1g069725 | 26.357 | 387 | 253 | 11 | 246 | 625 | 101 | 462 | 7.90e-37 | 144 |
MS.gene071191.t1 | MTR_1g096030 | 29.500 | 400 | 239 | 13 | 251 | 625 | 77 | 458 | 2.36e-35 | 139 |
MS.gene071191.t1 | MTR_5g015490 | 27.083 | 384 | 266 | 8 | 253 | 627 | 113 | 491 | 2.64e-34 | 137 |
MS.gene071191.t1 | MTR_4g077760 | 26.966 | 356 | 242 | 8 | 274 | 625 | 213 | 554 | 6.05e-32 | 130 |
MS.gene071191.t1 | MTR_7g057230 | 27.532 | 316 | 215 | 6 | 317 | 626 | 350 | 657 | 8.14e-32 | 131 |
MS.gene071191.t1 | MTR_2g034280 | 26.142 | 394 | 269 | 11 | 243 | 625 | 192 | 574 | 5.66e-31 | 128 |
MS.gene071191.t1 | MTR_5g015950 | 22.877 | 424 | 274 | 10 | 251 | 628 | 32 | 448 | 1.77e-28 | 119 |
MS.gene071191.t1 | MTR_3g053270 | 22.877 | 424 | 274 | 10 | 251 | 628 | 32 | 448 | 1.77e-28 | 119 |
MS.gene071191.t1 | MTR_3g072710 | 24.634 | 410 | 277 | 10 | 237 | 626 | 103 | 500 | 2.59e-28 | 119 |
MS.gene071191.t1 | MTR_7g109580 | 24.615 | 390 | 273 | 8 | 243 | 625 | 178 | 553 | 1.65e-27 | 117 |
MS.gene071191.t1 | MTR_5g058860 | 25.298 | 419 | 270 | 11 | 232 | 626 | 98 | 497 | 2.40e-27 | 116 |
MS.gene071191.t1 | MTR_1g086970 | 24.190 | 401 | 268 | 11 | 243 | 625 | 95 | 477 | 2.43e-26 | 113 |
MS.gene071191.t1 | MTR_4g095500 | 23.990 | 421 | 271 | 11 | 251 | 628 | 56 | 470 | 3.44e-26 | 112 |
MS.gene071191.t1 | MTR_2g099110 | 26.284 | 331 | 224 | 7 | 226 | 552 | 50 | 364 | 1.52e-25 | 110 |
MS.gene071191.t1 | MTR_8g093070 | 25.189 | 397 | 244 | 17 | 251 | 628 | 136 | 498 | 3.14e-21 | 97.8 |
MS.gene071191.t1 | MTR_0092s0100 | 22.252 | 373 | 270 | 7 | 255 | 625 | 376 | 730 | 6.12e-17 | 85.1 |
MS.gene071191.t1 | MTR_0092s0100 | 22.252 | 373 | 270 | 7 | 255 | 625 | 373 | 727 | 7.20e-17 | 85.1 |
MS.gene071191.t1 | MTR_4g026485 | 22.606 | 376 | 264 | 9 | 255 | 625 | 270 | 623 | 1.29e-14 | 77.8 |
MS.gene071191.t1 | MTR_8g020840 | 24.752 | 404 | 245 | 16 | 254 | 625 | 171 | 547 | 4.30e-14 | 75.9 |
MS.gene071191.t1 | MTR_3g022580 | 30.496 | 141 | 91 | 4 | 486 | 625 | 48 | 182 | 3.60e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071191.t1 | AT1G07530 | 45.428 | 689 | 274 | 15 | 35 | 628 | 86 | 767 | 0.0 | 569 |
MS.gene071191.t1 | AT2G29060 | 48.320 | 625 | 276 | 16 | 29 | 627 | 53 | 656 | 0.0 | 556 |
MS.gene071191.t1 | AT2G29060 | 46.605 | 648 | 290 | 14 | 29 | 627 | 53 | 693 | 0.0 | 548 |
MS.gene071191.t1 | AT2G29065 | 46.687 | 664 | 284 | 16 | 1 | 628 | 1 | 630 | 0.0 | 539 |
MS.gene071191.t1 | AT1G07520 | 46.384 | 636 | 288 | 12 | 36 | 628 | 71 | 696 | 8.92e-179 | 523 |
MS.gene071191.t1 | AT1G07520 | 46.384 | 636 | 288 | 12 | 36 | 628 | 70 | 695 | 9.85e-179 | 523 |
MS.gene071191.t1 | AT1G07520 | 49.813 | 536 | 230 | 9 | 124 | 628 | 4 | 531 | 2.31e-176 | 511 |
MS.gene071191.t1 | AT1G07520 | 49.813 | 536 | 230 | 9 | 124 | 628 | 4 | 531 | 2.31e-176 | 511 |
MS.gene071191.t1 | AT2G37650 | 41.718 | 652 | 318 | 17 | 28 | 627 | 73 | 714 | 6.00e-159 | 473 |
MS.gene071191.t1 | AT2G37650 | 41.718 | 652 | 318 | 17 | 28 | 627 | 61 | 702 | 1.28e-158 | 472 |
MS.gene071191.t1 | AT3G46600 | 47.846 | 441 | 221 | 4 | 190 | 628 | 116 | 549 | 5.60e-146 | 434 |
MS.gene071191.t1 | AT3G46600 | 47.846 | 441 | 221 | 4 | 190 | 628 | 148 | 581 | 6.63e-146 | 435 |
MS.gene071191.t1 | AT5G59450 | 45.788 | 463 | 232 | 7 | 180 | 628 | 143 | 600 | 4.55e-144 | 432 |
MS.gene071191.t1 | AT3G46600 | 50.529 | 378 | 182 | 2 | 251 | 628 | 1 | 373 | 1.92e-138 | 409 |
MS.gene071191.t1 | AT1G50600 | 32.713 | 376 | 248 | 3 | 250 | 625 | 155 | 525 | 1.38e-61 | 214 |
MS.gene071191.t1 | AT5G48150 | 31.383 | 376 | 254 | 3 | 250 | 625 | 118 | 489 | 1.41e-61 | 213 |
MS.gene071191.t1 | AT5G48150 | 31.383 | 376 | 254 | 3 | 250 | 625 | 118 | 489 | 1.41e-61 | 213 |
MS.gene071191.t1 | AT5G48150 | 31.383 | 376 | 254 | 3 | 250 | 625 | 118 | 489 | 1.41e-61 | 213 |
MS.gene071191.t1 | AT5G48150 | 31.383 | 376 | 254 | 3 | 250 | 625 | 118 | 489 | 1.41e-61 | 213 |
MS.gene071191.t1 | AT1G50600 | 32.713 | 376 | 248 | 3 | 250 | 625 | 226 | 596 | 4.70e-61 | 214 |
MS.gene071191.t1 | AT1G50600 | 32.713 | 376 | 248 | 3 | 250 | 625 | 230 | 600 | 5.07e-61 | 214 |
MS.gene071191.t1 | AT2G04890 | 32.447 | 376 | 242 | 4 | 250 | 625 | 49 | 412 | 1.65e-60 | 207 |
MS.gene071191.t1 | AT1G21450 | 31.565 | 377 | 248 | 5 | 252 | 625 | 223 | 592 | 9.89e-57 | 202 |
MS.gene071191.t1 | AT1G66350 | 32.383 | 386 | 234 | 8 | 243 | 625 | 144 | 505 | 1.70e-56 | 199 |
MS.gene071191.t1 | AT4G17230 | 31.398 | 379 | 255 | 3 | 249 | 627 | 153 | 526 | 2.36e-53 | 191 |
MS.gene071191.t1 | AT4G17230 | 31.398 | 379 | 255 | 3 | 249 | 627 | 153 | 526 | 2.36e-53 | 191 |
MS.gene071191.t1 | AT1G14920 | 31.008 | 387 | 244 | 9 | 243 | 625 | 161 | 528 | 4.81e-51 | 185 |
MS.gene071191.t1 | AT3G03450 | 29.534 | 386 | 256 | 7 | 243 | 625 | 172 | 544 | 3.81e-50 | 183 |
MS.gene071191.t1 | AT3G54220 | 29.380 | 371 | 245 | 6 | 258 | 627 | 297 | 651 | 1.52e-49 | 183 |
MS.gene071191.t1 | AT2G01570 | 29.974 | 387 | 248 | 9 | 243 | 625 | 213 | 580 | 3.52e-49 | 181 |
MS.gene071191.t1 | AT1G50420 | 25.688 | 436 | 260 | 5 | 247 | 625 | 50 | 478 | 6.40e-49 | 178 |
MS.gene071191.t1 | AT5G17490 | 28.198 | 383 | 247 | 9 | 249 | 625 | 155 | 515 | 1.39e-44 | 167 |
MS.gene071191.t1 | AT5G66770 | 28.321 | 399 | 264 | 9 | 236 | 625 | 198 | 583 | 2.95e-43 | 164 |
MS.gene071191.t1 | AT5G41920 | 25.728 | 412 | 283 | 7 | 219 | 625 | 6 | 399 | 4.36e-39 | 149 |
MS.gene071191.t1 | AT4G37650 | 25.831 | 391 | 269 | 9 | 253 | 627 | 145 | 530 | 1.13e-36 | 144 |
MS.gene071191.t1 | AT1G63100 | 29.745 | 353 | 234 | 7 | 247 | 596 | 245 | 586 | 3.51e-36 | 144 |
MS.gene071191.t1 | AT1G63100 | 29.745 | 353 | 234 | 7 | 247 | 596 | 270 | 611 | 3.51e-36 | 144 |
MS.gene071191.t1 | AT5G52510 | 24.742 | 388 | 264 | 7 | 252 | 625 | 266 | 639 | 4.50e-35 | 141 |
MS.gene071191.t1 | AT3G50650 | 26.810 | 373 | 248 | 8 | 263 | 625 | 184 | 541 | 9.07e-33 | 133 |
MS.gene071191.t1 | AT3G49950 | 27.665 | 394 | 257 | 12 | 251 | 627 | 27 | 409 | 7.31e-29 | 119 |
MS.gene071191.t1 | AT1G55580 | 25.776 | 419 | 252 | 10 | 251 | 625 | 41 | 444 | 1.69e-28 | 119 |
MS.gene071191.t1 | AT4G08250 | 27.654 | 405 | 253 | 18 | 239 | 625 | 94 | 476 | 1.20e-24 | 108 |
MS.gene071191.t1 | AT3G13840 | 23.448 | 435 | 264 | 17 | 222 | 625 | 113 | 509 | 5.65e-15 | 78.6 |
MS.gene071191.t1 | AT5G67411 | 33.824 | 204 | 115 | 10 | 373 | 562 | 1 | 198 | 4.01e-14 | 72.0 |
Find 141 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTCTTCATCATATTGAAAT+TGG | 0.107646 | 4.2:-40897234 | None:intergenic |
TTCGCTCTGTCTATTATTAA+TGG | 0.122836 | 4.2:+40898184 | MS.gene071191:CDS |
ACCCTTCATATCATTGATTT+TGG | 0.132720 | 4.2:+40897794 | MS.gene071191:CDS |
TTTCTTTGCTACACGGTTTA+AGG | 0.151261 | 4.2:+40898222 | MS.gene071191:CDS |
CTTCAAAACCTTTGTTGAAT+TGG | 0.153592 | 4.2:-40897157 | None:intergenic |
CACAATTAATGGAGAAATTT+AGG | 0.174417 | 4.2:+40898461 | MS.gene071191:CDS |
TGCCATTGTCTATATGTTTC+AGG | 0.199418 | 4.2:-40898394 | None:intergenic |
TCCATTGGACTCACAATTAA+TGG | 0.218479 | 4.2:+40898450 | MS.gene071191:CDS |
CTGGTGCTGGTTGTGCCATT+AGG | 0.228538 | 4.2:-40896927 | None:intergenic |
AAAACAAAACGATAGATTTA+AGG | 0.243289 | 4.2:+40897447 | MS.gene071191:CDS |
GATGCTTGAGAGGGAAATTA+TGG | 0.244933 | 4.2:+40898318 | MS.gene071191:CDS |
TTCAAAACCTTTGTTGAATT+GGG | 0.284127 | 4.2:-40897156 | None:intergenic |
GATTTGAGTTATGAACTTTA+TGG | 0.285754 | 4.2:-40896817 | None:intergenic |
ATCCCAGTGATCCTCAATTT+TGG | 0.286472 | 4.2:-40897881 | None:intergenic |
AAATGCAGAACTGCGTTTCT+AGG | 0.293502 | 4.2:-40898136 | None:intergenic |
CATGATGCTCTTTCCCCTAA+TGG | 0.300350 | 4.2:+40896912 | MS.gene071191:CDS |
TGGTGCTGGTTGTGCCATTA+GGG | 0.317958 | 4.2:-40896926 | None:intergenic |
TTTATATGCTTCAACTTGTT+GGG | 0.327100 | 4.2:+40898567 | MS.gene071191:CDS |
ACAGGAGTATCAGGTGAAAA+TGG | 0.327130 | 4.2:-40896999 | None:intergenic |
ATGCCCTAGCGTCGCGGAAA+TGG | 0.329797 | 4.2:+40898005 | MS.gene071191:CDS |
GTTTCTGATCTTGTTAATCA+TGG | 0.337520 | 4.2:+40897020 | MS.gene071191:CDS |
ATTAGCATTTCTATTGTCAT+TGG | 0.363634 | 4.2:-40897504 | None:intergenic |
AGATCAGAAACAGGAGTATC+AGG | 0.366925 | 4.2:-40897008 | None:intergenic |
ACGCAGTTCTGCATTTGATT+AGG | 0.369643 | 4.2:+40898143 | MS.gene071191:CDS |
GGCCTTGAGGCTCGCCTTGT+AGG | 0.370231 | 4.2:+40897605 | MS.gene071191:CDS |
CTCTTCATCATATTGAAATT+GGG | 0.378176 | 4.2:-40897233 | None:intergenic |
CATCAAATACAAAATCTCTA+TGG | 0.379159 | 4.2:-40898504 | None:intergenic |
GAACCCTATAGAAGGTTATA+TGG | 0.379462 | 4.2:+40896749 | MS.gene071191:CDS |
AAATATGCAAATTTCTTGAA+TGG | 0.386099 | 4.2:-40897728 | None:intergenic |
CATATAGACAATGGCAGCTT+AGG | 0.386852 | 4.2:+40898401 | MS.gene071191:CDS |
TGTTGAAACTCATCACAGTT+TGG | 0.391044 | 4.2:-40896720 | None:intergenic |
GAAGCCATATAACCTTCTAT+AGG | 0.392171 | 4.2:-40896753 | None:intergenic |
AAGCTAAGTGGGTCATAAAA+AGG | 0.412714 | 4.2:-40896867 | None:intergenic |
AGGCAACATTCTTCACCCTT+TGG | 0.417772 | 4.2:+40897545 | MS.gene071191:CDS |
ATTATTATTGCTACTGGTGC+TGG | 0.419180 | 4.2:-40896940 | None:intergenic |
TGCTTCAACTTGTTGGGTGC+CGG | 0.420897 | 4.2:+40898573 | MS.gene071191:CDS |
TGCCCTAGCGTCGCGGAAAT+GGG | 0.427853 | 4.2:+40898006 | MS.gene071191:CDS |
GGTACTATTATTATTGCTAC+TGG | 0.432809 | 4.2:-40896946 | None:intergenic |
GGGATAGAGTTCCCCTTACC+AGG | 0.440508 | 4.2:+40897899 | MS.gene071191:CDS |
GTCTCCTCGATTCCTTCTGT+CGG | 0.441440 | 4.2:-40897929 | None:intergenic |
TACCAAAATCAATGATATGA+AGG | 0.442503 | 4.2:-40897796 | None:intergenic |
TTTCCCATTTCCGCGACGCT+AGG | 0.446236 | 4.2:-40898009 | None:intergenic |
CCGCCAAAATTGAGGATCAC+TGG | 0.447330 | 4.2:+40897878 | MS.gene071191:CDS |
TATTTGATGAAGACAGCAAT+TGG | 0.449195 | 4.2:+40898518 | MS.gene071191:CDS |
AAGCCATATAACCTTCTATA+GGG | 0.457326 | 4.2:-40896752 | None:intergenic |
CTGTGATTTGTAAGCTAAGT+GGG | 0.457899 | 4.2:-40896878 | None:intergenic |
AATGACAATAGAAATGCTAA+TGG | 0.460659 | 4.2:+40897506 | MS.gene071191:CDS |
ACCTTTCCTTCGTTTGATGA+AGG | 0.461817 | 4.2:-40897401 | None:intergenic |
AATGGAGGAGGATGCTTGAG+AGG | 0.465699 | 4.2:+40898308 | MS.gene071191:CDS |
CTCCTCCATTCACTTCCCTT+CGG | 0.465787 | 4.2:-40898295 | None:intergenic |
CAATATGAGAACCCTATAGA+AGG | 0.467769 | 4.2:+40896741 | MS.gene071191:CDS |
ATGCTTGAGAGGGAAATTAT+GGG | 0.469263 | 4.2:+40898319 | MS.gene071191:CDS |
CACCAGCTCTATCGCCTACA+AGG | 0.469788 | 4.2:-40897619 | None:intergenic |
TTCTGCTATTTATGATATGT+TGG | 0.469875 | 4.2:+40898261 | MS.gene071191:CDS |
CCTTCTGTCGGGCGAAAGCC+TGG | 0.470645 | 4.2:-40897917 | None:intergenic |
ATAGACAGAGCGAAAATATC+CGG | 0.471744 | 4.2:-40898175 | None:intergenic |
GACAGCAATTGGATGCTTCA+AGG | 0.472919 | 4.2:+40898529 | MS.gene071191:CDS |
TGTCGGGCGAAAGCCTGGTA+AGG | 0.486805 | 4.2:-40897912 | None:intergenic |
CGCCTTGTAGGCGATAGAGC+TGG | 0.491595 | 4.2:+40897617 | MS.gene071191:CDS |
GCAATTGGATGCTTCAAGGT+TGG | 0.492197 | 4.2:+40898533 | MS.gene071191:CDS |
CTGGCCACTGAAAACCATAA+AGG | 0.503527 | 4.2:-40897820 | None:intergenic |
TTCCCATTTCCGCGACGCTA+GGG | 0.504392 | 4.2:-40898008 | None:intergenic |
CGCCAAAATTGAGGATCACT+GGG | 0.504465 | 4.2:+40897879 | MS.gene071191:CDS |
GATAGAAACTTAATAAGCAC+TGG | 0.505792 | 4.2:-40897839 | None:intergenic |
TTCATCTATTACCAATATGT+TGG | 0.508354 | 4.2:+40897100 | MS.gene071191:CDS |
TGATTAACAAGATCAGAAAC+AGG | 0.510638 | 4.2:-40897017 | None:intergenic |
TTCACTTCCCTTCGGTAAGA+CGG | 0.511596 | 4.2:-40898287 | None:intergenic |
CTCAGCAGCAGTGATTCTCT+TGG | 0.512609 | 4.2:-40897669 | None:intergenic |
ATGCAAATTTCTTGAATGGA+GGG | 0.520263 | 4.2:-40897724 | None:intergenic |
TGAGAGGGAAATTATGGGTA+GGG | 0.522045 | 4.2:+40898324 | MS.gene071191:CDS |
TATGCAAATTTCTTGAATGG+AGG | 0.522171 | 4.2:-40897725 | None:intergenic |
TCTCCTCGATTCCTTCTGTC+GGG | 0.522739 | 4.2:-40897928 | None:intergenic |
AATGTTCTGTGCCAACATAT+TGG | 0.522800 | 4.2:-40897111 | None:intergenic |
CTTTGTGATGCATCGCCAAA+GGG | 0.524740 | 4.2:-40897560 | None:intergenic |
TTTGATTAGGAAGATAAGTC+CGG | 0.526586 | 4.2:+40898156 | MS.gene071191:CDS |
TTAAACCGTGTAGCAAAGAA+AGG | 0.528289 | 4.2:-40898220 | None:intergenic |
GTAGTTGCTGTGAACTGTGT+GGG | 0.528753 | 4.2:+40898070 | MS.gene071191:CDS |
AGGGAGAAGTAACAAGCAAT+CGG | 0.530121 | 4.2:+40897286 | MS.gene071191:CDS |
TGGTTTCAAGCAGCTTCCAT+TGG | 0.530154 | 4.2:+40898435 | MS.gene071191:CDS |
TCCATTAATTGTGAGTCCAA+TGG | 0.531558 | 4.2:-40898451 | None:intergenic |
TTTCCTTCGTTTGATGAAGG+TGG | 0.533082 | 4.2:-40897398 | None:intergenic |
CAGCTTAGGAATACAAGAGC+TGG | 0.535109 | 4.2:+40898415 | MS.gene071191:CDS |
ACTAACACTACTTGAAGCAC+AGG | 0.535170 | 4.2:-40897057 | None:intergenic |
CATGAGCGCGAAGAAGAAGA+AGG | 0.535210 | 4.2:+40897266 | MS.gene071191:CDS |
GTTCATAACTCAAATCCTCA+TGG | 0.541442 | 4.2:+40896824 | MS.gene071191:CDS |
CCTCAGACTCAACTCTTGAA+AGG | 0.543868 | 4.2:+40897200 | MS.gene071191:CDS |
GTCGGGCGAAAGCCTGGTAA+GGG | 0.545615 | 4.2:-40897911 | None:intergenic |
AAGATATGAATTGATTATGC+CGG | 0.549732 | 4.2:-40898592 | None:intergenic |
TGATAAAGCTTTGCTTAATG+TGG | 0.551145 | 4.2:+40897349 | MS.gene071191:CDS |
CGAAGGGAAGTGAATGGAGG+AGG | 0.551209 | 4.2:+40898296 | MS.gene071191:CDS |
TTTCTATCAAATAGAGAAGG+TGG | 0.552509 | 4.2:+40897854 | MS.gene071191:CDS |
CCAGGCTTTCGCCCGACAGA+AGG | 0.554024 | 4.2:+40897917 | MS.gene071191:CDS |
CCTTTGTGATGCATCGCCAA+AGG | 0.561319 | 4.2:-40897561 | None:intergenic |
GTGGCTCATTACTTTGCCGA+TGG | 0.563540 | 4.2:+40897584 | MS.gene071191:CDS |
TCTGTGATTTGTAAGCTAAG+TGG | 0.568670 | 4.2:-40896879 | None:intergenic |
TCTATTTCCCAATTCAACAA+AGG | 0.569524 | 4.2:+40897149 | MS.gene071191:CDS |
ATAGTTAGCAAGTCGATGAC+CGG | 0.571078 | 4.2:-40897951 | None:intergenic |
CGCCTACAAGGCGAGCCTCA+AGG | 0.571405 | 4.2:-40897607 | None:intergenic |
TCTTACCGAAGGGAAGTGAA+TGG | 0.573630 | 4.2:+40898290 | MS.gene071191:CDS |
ACCAAAATCAATGATATGAA+GGG | 0.575569 | 4.2:-40897795 | None:intergenic |
AAGGCGAGCCTCAAGGCCAT+CGG | 0.575761 | 4.2:-40897600 | None:intergenic |
ACAGAAGGAATCGAGGAGAC+CGG | 0.577833 | 4.2:+40897932 | MS.gene071191:CDS |
CTTTGGCGATGCATCACAAA+GGG | 0.583245 | 4.2:+40897562 | MS.gene071191:CDS |
GCAGTGATTCTCTTGGTGCT+AGG | 0.583817 | 4.2:-40897662 | None:intergenic |
ATTCACCTTTCTTTGCTACA+CGG | 0.584416 | 4.2:+40898215 | MS.gene071191:CDS |
TGGATGCTTCAAGGTTGGAA+AGG | 0.586034 | 4.2:+40898538 | MS.gene071191:CDS |
GTTGGACGCCGTCTTACCGA+AGG | 0.588496 | 4.2:+40898279 | MS.gene071191:CDS |
TTACTTTGCCGATGGCCTTG+AGG | 0.590932 | 4.2:+40897592 | MS.gene071191:CDS |
ATGAATGTTGTAGCATGTGA+AGG | 0.591903 | 4.2:+40898352 | MS.gene071191:CDS |
CTTTGCTACACGGTTTAAGG+AGG | 0.595296 | 4.2:+40898225 | MS.gene071191:CDS |
CCTTTCAAGAGTTGAGTCTG+AGG | 0.595634 | 4.2:-40897200 | None:intergenic |
GGCTATTAGTGTTGTTGATG+AGG | 0.599082 | 4.2:+40897307 | MS.gene071191:CDS |
ATGAGCGCGAAGAAGAAGAA+GGG | 0.599909 | 4.2:+40897267 | MS.gene071191:CDS |
TTCAAGAGTTGAGTCTGAGG+AGG | 0.601098 | 4.2:-40897197 | None:intergenic |
TTGAGAGGGAAATTATGGGT+AGG | 0.601904 | 4.2:+40898323 | MS.gene071191:CDS |
ATGGAGGAGGATGCTTGAGA+GGG | 0.602055 | 4.2:+40898309 | MS.gene071191:CDS |
AAGGTGGACCGCCAAAATTG+AGG | 0.602746 | 4.2:+40897870 | MS.gene071191:CDS |
TTAGGACTAAGTTAAAGCAA+TGG | 0.607899 | 4.2:+40898479 | MS.gene071191:CDS |
GATTCTCTTGGTGCTAGGCG+AGG | 0.610614 | 4.2:-40897657 | None:intergenic |
TTCAGTGACAGATTCTTCCA+TGG | 0.614881 | 4.2:+40896773 | MS.gene071191:CDS |
GCAAGAATCGTCGATGCTAG+TGG | 0.620710 | 4.2:-40896967 | None:intergenic |
TTGCTGTGAACTGTGTGGGG+AGG | 0.623836 | 4.2:+40898074 | MS.gene071191:CDS |
CATTAGGGGAAAGAGCATCA+TGG | 0.624005 | 4.2:-40896911 | None:intergenic |
ACCTTCATCAAACGAAGGAA+AGG | 0.627171 | 4.2:+40897400 | MS.gene071191:CDS |
TGGCGATGCATCACAAAGGG+TGG | 0.631669 | 4.2:+40897565 | MS.gene071191:CDS |
AAGTTTCTATCAAATAGAGA+AGG | 0.631857 | 4.2:+40897851 | MS.gene071191:CDS |
GGTGCTGGTTGTGCCATTAG+GGG | 0.631907 | 4.2:-40896925 | None:intergenic |
CCTTTGGCGATGCATCACAA+AGG | 0.636123 | 4.2:+40897561 | MS.gene071191:CDS |
GCTTCAAGTAGTGTTAGTGA+TGG | 0.644911 | 4.2:+40897062 | MS.gene071191:CDS |
TAGTTGCTGTGAACTGTGTG+GGG | 0.647970 | 4.2:+40898071 | MS.gene071191:CDS |
TCGGGCGAAAGCCTGGTAAG+GGG | 0.648782 | 4.2:-40897910 | None:intergenic |
TCGCCCGACAGAAGGAATCG+AGG | 0.651016 | 4.2:+40897925 | MS.gene071191:CDS |
AAGGTTTAGAAAGAGTTGAG+AGG | 0.653367 | 4.2:+40898371 | MS.gene071191:CDS |
GCTAGGGCATTGTACTCGAA+CGG | 0.658627 | 4.2:-40897992 | None:intergenic |
GGCCTGAAACATATAGACAA+TGG | 0.658975 | 4.2:+40898392 | MS.gene071191:CDS |
TTGGACGCCGTCTTACCGAA+GGG | 0.665080 | 4.2:+40898280 | MS.gene071191:CDS |
TACCGAAGGGAAGTGAATGG+AGG | 0.669237 | 4.2:+40898293 | MS.gene071191:CDS |
AGTACAATGCCCTAGCGTCG+CGG | 0.670515 | 4.2:+40897999 | MS.gene071191:CDS |
GGTAGTTGCTGTGAACTGTG+TGG | 0.682353 | 4.2:+40898069 | MS.gene071191:CDS |
AAACCACCTTCATCAAACGA+AGG | 0.698210 | 4.2:+40897395 | MS.gene071191:CDS |
TCTTAAAATCAAGAGCAACG+AGG | 0.764812 | 4.2:+40898048 | MS.gene071191:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAACAAAACGATAGATTTA+AGG | + | chr4.2:40897447-40897466 | MS.gene071191:CDS | 20.0% |
!! | AAATATGCAAATTTCTTGAA+TGG | - | chr4.2:40897731-40897750 | None:intergenic | 20.0% |
! | AAGTTTCTATCAAATAGAGA+AGG | + | chr4.2:40897851-40897870 | MS.gene071191:CDS | 25.0% |
! | AATGACAATAGAAATGCTAA+TGG | + | chr4.2:40897506-40897525 | MS.gene071191:CDS | 25.0% |
! | ACCAAAATCAATGATATGAA+GGG | - | chr4.2:40897798-40897817 | None:intergenic | 25.0% |
! | ACTCTTCATCATATTGAAAT+TGG | - | chr4.2:40897237-40897256 | None:intergenic | 25.0% |
! | ATTAGCATTTCTATTGTCAT+TGG | - | chr4.2:40897507-40897526 | None:intergenic | 25.0% |
! | CACAATTAATGGAGAAATTT+AGG | + | chr4.2:40898461-40898480 | MS.gene071191:CDS | 25.0% |
! | CATCAAATACAAAATCTCTA+TGG | - | chr4.2:40898507-40898526 | None:intergenic | 25.0% |
! | CTCTTCATCATATTGAAATT+GGG | - | chr4.2:40897236-40897255 | None:intergenic | 25.0% |
! | TACCAAAATCAATGATATGA+AGG | - | chr4.2:40897799-40897818 | None:intergenic | 25.0% |
! | TTCAAAACCTTTGTTGAATT+GGG | - | chr4.2:40897159-40897178 | None:intergenic | 25.0% |
! | TTCATCTATTACCAATATGT+TGG | + | chr4.2:40897100-40897119 | MS.gene071191:CDS | 25.0% |
!! | GATTTGAGTTATGAACTTTA+TGG | - | chr4.2:40896820-40896839 | None:intergenic | 25.0% |
!! | TTCTGCTATTTATGATATGT+TGG | + | chr4.2:40898261-40898280 | MS.gene071191:CDS | 25.0% |
!! | TTTATATGCTTCAACTTGTT+GGG | + | chr4.2:40898567-40898586 | MS.gene071191:CDS | 25.0% |
!! | TTTTATATGCTTCAACTTGT+TGG | + | chr4.2:40898566-40898585 | MS.gene071191:CDS | 25.0% |
!!! | ATTGATTTTGGTATCCTTTA+TGG | + | chr4.2:40897806-40897825 | MS.gene071191:CDS | 25.0% |
AAGCCATATAACCTTCTATA+GGG | - | chr4.2:40896755-40896774 | None:intergenic | 30.0% | |
ATGCAAATTTCTTGAATGGA+GGG | - | chr4.2:40897727-40897746 | None:intergenic | 30.0% | |
CTTCAAAACCTTTGTTGAAT+TGG | - | chr4.2:40897160-40897179 | None:intergenic | 30.0% | |
GATAGAAACTTAATAAGCAC+TGG | - | chr4.2:40897842-40897861 | None:intergenic | 30.0% | |
GGTACTATTATTATTGCTAC+TGG | - | chr4.2:40896949-40896968 | None:intergenic | 30.0% | |
GTTTCTGATCTTGTTAATCA+TGG | + | chr4.2:40897020-40897039 | MS.gene071191:CDS | 30.0% | |
TATGCAAATTTCTTGAATGG+AGG | - | chr4.2:40897728-40897747 | None:intergenic | 30.0% | |
TATTTGATGAAGACAGCAAT+TGG | + | chr4.2:40898518-40898537 | MS.gene071191:CDS | 30.0% | |
TCTATTTCCCAATTCAACAA+AGG | + | chr4.2:40897149-40897168 | MS.gene071191:CDS | 30.0% | |
TGATAAAGCTTTGCTTAATG+TGG | + | chr4.2:40897349-40897368 | MS.gene071191:CDS | 30.0% | |
TGATTAACAAGATCAGAAAC+AGG | - | chr4.2:40897020-40897039 | None:intergenic | 30.0% | |
TTAGGACTAAGTTAAAGCAA+TGG | + | chr4.2:40898479-40898498 | MS.gene071191:CDS | 30.0% | |
TTCGCTCTGTCTATTATTAA+TGG | + | chr4.2:40898184-40898203 | MS.gene071191:CDS | 30.0% | |
TTTCTATCAAATAGAGAAGG+TGG | + | chr4.2:40897854-40897873 | MS.gene071191:CDS | 30.0% | |
TTTGATTAGGAAGATAAGTC+CGG | + | chr4.2:40898156-40898175 | MS.gene071191:CDS | 30.0% | |
!! | TTTTTGCTATCACGTTTCTT+TGG | - | chr4.2:40897431-40897450 | None:intergenic | 30.0% |
!!! | ACCCTTCATATCATTGATTT+TGG | + | chr4.2:40897794-40897813 | MS.gene071191:CDS | 30.0% |
!!! | ATGGTCTTTTAAAGCAGATT+AGG | + | chr4.2:40897525-40897544 | MS.gene071191:CDS | 30.0% |
AAGCTAAGTGGGTCATAAAA+AGG | - | chr4.2:40896870-40896889 | None:intergenic | 35.0% | |
AAGGTTTAGAAAGAGTTGAG+AGG | + | chr4.2:40898371-40898390 | MS.gene071191:CDS | 35.0% | |
AATGTTCTGTGCCAACATAT+TGG | - | chr4.2:40897114-40897133 | None:intergenic | 35.0% | |
ATAGACAGAGCGAAAATATC+CGG | - | chr4.2:40898178-40898197 | None:intergenic | 35.0% | |
ATGAATGTTGTAGCATGTGA+AGG | + | chr4.2:40898352-40898371 | MS.gene071191:CDS | 35.0% | |
ATGCTTGAGAGGGAAATTAT+GGG | + | chr4.2:40898319-40898338 | MS.gene071191:CDS | 35.0% | |
ATTATTATTGCTACTGGTGC+TGG | - | chr4.2:40896943-40896962 | None:intergenic | 35.0% | |
ATTCACCTTTCTTTGCTACA+CGG | + | chr4.2:40898215-40898234 | MS.gene071191:CDS | 35.0% | |
CAATATGAGAACCCTATAGA+AGG | + | chr4.2:40896741-40896760 | MS.gene071191:CDS | 35.0% | |
GAACCCTATAGAAGGTTATA+TGG | + | chr4.2:40896749-40896768 | MS.gene071191:CDS | 35.0% | |
GAAGCCATATAACCTTCTAT+AGG | - | chr4.2:40896756-40896775 | None:intergenic | 35.0% | |
GTTCATAACTCAAATCCTCA+TGG | + | chr4.2:40896824-40896843 | MS.gene071191:CDS | 35.0% | |
TCCATTAATTGTGAGTCCAA+TGG | - | chr4.2:40898454-40898473 | None:intergenic | 35.0% | |
TCCATTGGACTCACAATTAA+TGG | + | chr4.2:40898450-40898469 | MS.gene071191:CDS | 35.0% | |
TCTTAAAATCAAGAGCAACG+AGG | + | chr4.2:40898048-40898067 | MS.gene071191:CDS | 35.0% | |
TGAAAAATCAGTGTCTTCCA+TGG | - | chr4.2:40896793-40896812 | None:intergenic | 35.0% | |
TGCCATTGTCTATATGTTTC+AGG | - | chr4.2:40898397-40898416 | None:intergenic | 35.0% | |
TGTTGAAACTCATCACAGTT+TGG | - | chr4.2:40896723-40896742 | None:intergenic | 35.0% | |
TTAAACCGTGTAGCAAAGAA+AGG | - | chr4.2:40898223-40898242 | None:intergenic | 35.0% | |
TTTCTTTGCTACACGGTTTA+AGG | + | chr4.2:40898222-40898241 | MS.gene071191:CDS | 35.0% | |
! | CTGTGATTTGTAAGCTAAGT+GGG | - | chr4.2:40896881-40896900 | None:intergenic | 35.0% |
! | GTATCCTTTATGGTTTTCAG+TGG | + | chr4.2:40897816-40897835 | MS.gene071191:CDS | 35.0% |
! | TCTGTGATTTGTAAGCTAAG+TGG | - | chr4.2:40896882-40896901 | None:intergenic | 35.0% |
AAACCACCTTCATCAAACGA+AGG | + | chr4.2:40897395-40897414 | MS.gene071191:CDS | 40.0% | |
AAATGCAGAACTGCGTTTCT+AGG | - | chr4.2:40898139-40898158 | None:intergenic | 40.0% | |
ACCTTCATCAAACGAAGGAA+AGG | + | chr4.2:40897400-40897419 | MS.gene071191:CDS | 40.0% | |
ACCTTTCCTTCGTTTGATGA+AGG | - | chr4.2:40897404-40897423 | None:intergenic | 40.0% | |
ACGCAGTTCTGCATTTGATT+AGG | + | chr4.2:40898143-40898162 | MS.gene071191:CDS | 40.0% | |
ACTAACACTACTTGAAGCAC+AGG | - | chr4.2:40897060-40897079 | None:intergenic | 40.0% | |
AGGGAGAAGTAACAAGCAAT+CGG | + | chr4.2:40897286-40897305 | MS.gene071191:CDS | 40.0% | |
ATAGTTAGCAAGTCGATGAC+CGG | - | chr4.2:40897954-40897973 | None:intergenic | 40.0% | |
CATATAGACAATGGCAGCTT+AGG | + | chr4.2:40898401-40898420 | MS.gene071191:CDS | 40.0% | |
GATGCTTGAGAGGGAAATTA+TGG | + | chr4.2:40898318-40898337 | MS.gene071191:CDS | 40.0% | |
GCTTCAAGTAGTGTTAGTGA+TGG | + | chr4.2:40897062-40897081 | MS.gene071191:CDS | 40.0% | |
GGCCTGAAACATATAGACAA+TGG | + | chr4.2:40898392-40898411 | MS.gene071191:CDS | 40.0% | |
TGAGAGGGAAATTATGGGTA+GGG | + | chr4.2:40898324-40898343 | MS.gene071191:CDS | 40.0% | |
TTCAGTGACAGATTCTTCCA+TGG | + | chr4.2:40896773-40896792 | MS.gene071191:CDS | 40.0% | |
TTGAGAGGGAAATTATGGGT+AGG | + | chr4.2:40898323-40898342 | MS.gene071191:CDS | 40.0% | |
TTTCCTTCGTTTGATGAAGG+TGG | - | chr4.2:40897401-40897420 | None:intergenic | 40.0% | |
! | ATCCCAGTGATCCTCAATTT+TGG | - | chr4.2:40897884-40897903 | None:intergenic | 40.0% |
! | GGCTATTAGTGTTGTTGATG+AGG | + | chr4.2:40897307-40897326 | MS.gene071191:CDS | 40.0% |
!! | ACAGGAGTATCAGGTGAAAA+TGG | - | chr4.2:40897002-40897021 | None:intergenic | 40.0% |
!! | AGATCAGAAACAGGAGTATC+AGG | - | chr4.2:40897011-40897030 | None:intergenic | 40.0% |
AGGCAACATTCTTCACCCTT+TGG | + | chr4.2:40897545-40897564 | MS.gene071191:CDS | 45.0% | |
ATGAGCGCGAAGAAGAAGAA+GGG | + | chr4.2:40897267-40897286 | MS.gene071191:CDS | 45.0% | |
CAGCTTAGGAATACAAGAGC+TGG | + | chr4.2:40898415-40898434 | MS.gene071191:CDS | 45.0% | |
CATGATGCTCTTTCCCCTAA+TGG | + | chr4.2:40896912-40896931 | MS.gene071191:CDS | 45.0% | |
CCTCAGACTCAACTCTTGAA+AGG | + | chr4.2:40897200-40897219 | MS.gene071191:CDS | 45.0% | |
CCTTTCAAGAGTTGAGTCTG+AGG | - | chr4.2:40897203-40897222 | None:intergenic | 45.0% | |
CGCCAAAATTGAGGATCACT+GGG | + | chr4.2:40897879-40897898 | MS.gene071191:CDS | 45.0% | |
CTGGCCACTGAAAACCATAA+AGG | - | chr4.2:40897823-40897842 | None:intergenic | 45.0% | |
CTTTGCTACACGGTTTAAGG+AGG | + | chr4.2:40898225-40898244 | MS.gene071191:CDS | 45.0% | |
CTTTGGCGATGCATCACAAA+GGG | + | chr4.2:40897562-40897581 | MS.gene071191:CDS | 45.0% | |
CTTTGTGATGCATCGCCAAA+GGG | - | chr4.2:40897563-40897582 | None:intergenic | 45.0% | |
GACAGCAATTGGATGCTTCA+AGG | + | chr4.2:40898529-40898548 | MS.gene071191:CDS | 45.0% | |
GCAATTGGATGCTTCAAGGT+TGG | + | chr4.2:40898533-40898552 | MS.gene071191:CDS | 45.0% | |
GTAGTTGCTGTGAACTGTGT+GGG | + | chr4.2:40898070-40898089 | MS.gene071191:CDS | 45.0% | |
GTGGGTCATAAAAAGGTCTC+TGG | - | chr4.2:40896863-40896882 | None:intergenic | 45.0% | |
TAGTTGCTGTGAACTGTGTG+GGG | + | chr4.2:40898071-40898090 | MS.gene071191:CDS | 45.0% | |
TCTTACCGAAGGGAAGTGAA+TGG | + | chr4.2:40898290-40898309 | MS.gene071191:CDS | 45.0% | |
TGGATGCTTCAAGGTTGGAA+AGG | + | chr4.2:40898538-40898557 | MS.gene071191:CDS | 45.0% | |
TGGTTTCAAGCAGCTTCCAT+TGG | + | chr4.2:40898435-40898454 | MS.gene071191:CDS | 45.0% | |
TTCAAGAGTTGAGTCTGAGG+AGG | - | chr4.2:40897200-40897219 | None:intergenic | 45.0% | |
TTCACTTCCCTTCGGTAAGA+CGG | - | chr4.2:40898290-40898309 | None:intergenic | 45.0% | |
! | CCAGTGATCCTCAATTTTGG+CGG | - | chr4.2:40897881-40897900 | None:intergenic | 45.0% |
! | GGTCAACGTTTTCTTCCATG+AGG | - | chr4.2:40896842-40896861 | None:intergenic | 45.0% |
!! | CATTAGGGGAAAGAGCATCA+TGG | - | chr4.2:40896914-40896933 | None:intergenic | 45.0% |
AAGGTGGACCGCCAAAATTG+AGG | + | chr4.2:40897870-40897889 | MS.gene071191:CDS | 50.0% | |
AATGGAGGAGGATGCTTGAG+AGG | + | chr4.2:40898308-40898327 | MS.gene071191:CDS | 50.0% | |
ACAGAAGGAATCGAGGAGAC+CGG | + | chr4.2:40897932-40897951 | MS.gene071191:CDS | 50.0% | |
ATGGAGGAGGATGCTTGAGA+GGG | + | chr4.2:40898309-40898328 | MS.gene071191:CDS | 50.0% | |
CATGAGCGCGAAGAAGAAGA+AGG | + | chr4.2:40897266-40897285 | MS.gene071191:CDS | 50.0% | |
CCGCCAAAATTGAGGATCAC+TGG | + | chr4.2:40897878-40897897 | MS.gene071191:CDS | 50.0% | |
CCTTTGGCGATGCATCACAA+AGG | + | chr4.2:40897561-40897580 | MS.gene071191:CDS | 50.0% | |
CCTTTGTGATGCATCGCCAA+AGG | - | chr4.2:40897564-40897583 | None:intergenic | 50.0% | |
CTCAGCAGCAGTGATTCTCT+TGG | - | chr4.2:40897672-40897691 | None:intergenic | 50.0% | |
CTCCTCCATTCACTTCCCTT+CGG | - | chr4.2:40898298-40898317 | None:intergenic | 50.0% | |
GCAAGAATCGTCGATGCTAG+TGG | - | chr4.2:40896970-40896989 | None:intergenic | 50.0% | |
GGTAGTTGCTGTGAACTGTG+TGG | + | chr4.2:40898069-40898088 | MS.gene071191:CDS | 50.0% | |
GTCTCCTCGATTCCTTCTGT+CGG | - | chr4.2:40897932-40897951 | None:intergenic | 50.0% | |
GTGGCTCATTACTTTGCCGA+TGG | + | chr4.2:40897584-40897603 | MS.gene071191:CDS | 50.0% | |
TACCGAAGGGAAGTGAATGG+AGG | + | chr4.2:40898293-40898312 | MS.gene071191:CDS | 50.0% | |
TCTCCTCGATTCCTTCTGTC+GGG | - | chr4.2:40897931-40897950 | None:intergenic | 50.0% | |
! | TTACTTTGCCGATGGCCTTG+AGG | + | chr4.2:40897592-40897611 | MS.gene071191:CDS | 50.0% |
!! | GCAGTGATTCTCTTGGTGCT+AGG | - | chr4.2:40897665-40897684 | None:intergenic | 50.0% |
!! | GCTAGGGCATTGTACTCGAA+CGG | - | chr4.2:40897995-40898014 | None:intergenic | 50.0% |
!! | TGCTTCAACTTGTTGGGTGC+CGG | + | chr4.2:40898573-40898592 | MS.gene071191:CDS | 50.0% |
!! | TGGTGCTGGTTGTGCCATTA+GGG | - | chr4.2:40896929-40896948 | None:intergenic | 50.0% |
AGTACAATGCCCTAGCGTCG+CGG | + | chr4.2:40897999-40898018 | MS.gene071191:CDS | 55.0% | |
CACCAGCTCTATCGCCTACA+AGG | - | chr4.2:40897622-40897641 | None:intergenic | 55.0% | |
CGAAGGGAAGTGAATGGAGG+AGG | + | chr4.2:40898296-40898315 | MS.gene071191:CDS | 55.0% | |
GGGATAGAGTTCCCCTTACC+AGG | + | chr4.2:40897899-40897918 | MS.gene071191:CDS | 55.0% | |
TGGCGATGCATCACAAAGGG+TGG | + | chr4.2:40897565-40897584 | MS.gene071191:CDS | 55.0% | |
TTCCCATTTCCGCGACGCTA+GGG | - | chr4.2:40898011-40898030 | None:intergenic | 55.0% | |
TTGCTGTGAACTGTGTGGGG+AGG | + | chr4.2:40898074-40898093 | MS.gene071191:CDS | 55.0% | |
TTGGACGCCGTCTTACCGAA+GGG | + | chr4.2:40898280-40898299 | MS.gene071191:CDS | 55.0% | |
TTTCCCATTTCCGCGACGCT+AGG | - | chr4.2:40898012-40898031 | None:intergenic | 55.0% | |
!! | CTGGTGCTGGTTGTGCCATT+AGG | - | chr4.2:40896930-40896949 | None:intergenic | 55.0% |
!! | GATTCTCTTGGTGCTAGGCG+AGG | - | chr4.2:40897660-40897679 | None:intergenic | 55.0% |
!! | GGTGCTGGTTGTGCCATTAG+GGG | - | chr4.2:40896928-40896947 | None:intergenic | 55.0% |
AAGGCGAGCCTCAAGGCCAT+CGG | - | chr4.2:40897603-40897622 | None:intergenic | 60.0% | |
ATGCCCTAGCGTCGCGGAAA+TGG | + | chr4.2:40898005-40898024 | MS.gene071191:CDS | 60.0% | |
CGCCTTGTAGGCGATAGAGC+TGG | + | chr4.2:40897617-40897636 | MS.gene071191:CDS | 60.0% | |
GTCGGGCGAAAGCCTGGTAA+GGG | - | chr4.2:40897914-40897933 | None:intergenic | 60.0% | |
GTTGGACGCCGTCTTACCGA+AGG | + | chr4.2:40898279-40898298 | MS.gene071191:CDS | 60.0% | |
TCGCCCGACAGAAGGAATCG+AGG | + | chr4.2:40897925-40897944 | MS.gene071191:CDS | 60.0% | |
TCGGGCGAAAGCCTGGTAAG+GGG | - | chr4.2:40897913-40897932 | None:intergenic | 60.0% | |
TGCCCTAGCGTCGCGGAAAT+GGG | + | chr4.2:40898006-40898025 | MS.gene071191:CDS | 60.0% | |
TGTCGGGCGAAAGCCTGGTA+AGG | - | chr4.2:40897915-40897934 | None:intergenic | 60.0% | |
CCAGGCTTTCGCCCGACAGA+AGG | + | chr4.2:40897917-40897936 | MS.gene071191:CDS | 65.0% | |
CCTTCTGTCGGGCGAAAGCC+TGG | - | chr4.2:40897920-40897939 | None:intergenic | 65.0% | |
CGCCTACAAGGCGAGCCTCA+AGG | - | chr4.2:40897610-40897629 | None:intergenic | 65.0% | |
GGCCTTGAGGCTCGCCTTGT+AGG | + | chr4.2:40897605-40897624 | MS.gene071191:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 40896714 | 40898600 | 40896714 | ID=MS.gene071191 |
chr4.2 | mRNA | 40896714 | 40898600 | 40896714 | ID=MS.gene071191.t1;Parent=MS.gene071191 |
chr4.2 | exon | 40896714 | 40898600 | 40896714 | ID=MS.gene071191.t1.exon1;Parent=MS.gene071191.t1 |
chr4.2 | CDS | 40896714 | 40898600 | 40896714 | ID=cds.MS.gene071191.t1;Parent=MS.gene071191.t1 |
Gene Sequence |
Protein sequence |