AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07128

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07128.t1 MTR_2g099990 55.667 300 83 5 9 293 56 320 1.38e-106 325
MS.gene07128.t1 MTR_8g017210 54.294 326 119 7 9 321 72 380 1.95e-104 321
MS.gene07128.t1 MTR_2g090745 52.941 323 117 7 9 297 17 338 5.77e-99 304
MS.gene07128.t1 MTR_1g112270 82.353 153 27 0 9 161 54 206 3.27e-98 306
MS.gene07128.t1 MTR_2g099990 54.545 286 80 5 23 293 1 251 4.47e-98 300
MS.gene07128.t1 MTR_1g112270 82.895 152 26 0 10 161 66 217 5.49e-98 306
MS.gene07128.t1 MTR_1g094115 82.000 150 27 0 9 158 57 206 1.24e-96 301
MS.gene07128.t1 MTR_4g059870 81.935 155 27 1 9 162 48 202 1.74e-96 300
MS.gene07128.t1 MTR_1g016010 49.840 313 107 6 9 315 51 319 1.90e-94 293
MS.gene07128.t1 MTR_2g093960 77.419 155 34 1 9 162 42 196 3.19e-92 286
MS.gene07128.t1 MTR_1g094115 81.818 132 24 0 27 158 58 189 5.13e-85 271
MS.gene07128.t1 MTR_2g017720 76.316 114 22 1 9 122 323 431 9.12e-55 189
MS.gene07128.t1 MTR_3g102000 65.657 99 27 2 26 120 36 131 2.29e-38 139
MS.gene07128.t1 MTR_5g030560 74.000 50 13 0 4 53 11 60 7.17e-21 87.0
MS.gene07128.t1 MTR_1g093095 33.537 164 86 7 22 164 109 270 9.96e-20 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07128.t1 AT3G50700 54.180 323 118 6 9 310 44 357 2.54e-106 323
MS.gene07128.t1 AT1G03840 85.806 155 22 0 9 163 51 205 4.04e-100 309
MS.gene07128.t1 AT1G03840 85.161 155 23 0 9 163 49 203 2.13e-99 307
MS.gene07128.t1 AT5G44160 72.632 190 44 2 8 189 7 196 1.25e-98 303
MS.gene07128.t1 AT5G66730 84.314 153 24 0 9 161 42 194 1.53e-98 305
MS.gene07128.t1 AT5G44160 73.016 189 43 2 9 189 47 235 5.47e-98 302
MS.gene07128.t1 AT1G55110 83.871 155 24 1 9 162 73 227 2.55e-97 300
MS.gene07128.t1 AT1G55110 83.871 155 24 1 9 162 73 227 2.55e-97 300
MS.gene07128.t1 AT1G55110 83.871 155 24 1 9 162 73 227 2.55e-97 300
MS.gene07128.t1 AT1G14580 81.699 153 28 0 9 161 63 215 3.47e-97 300
MS.gene07128.t1 AT1G14580 81.699 153 28 0 9 161 63 215 3.47e-97 300
MS.gene07128.t1 AT1G14580 81.699 153 28 0 9 161 77 229 5.80e-97 300
MS.gene07128.t1 AT2G02070 81.529 157 29 0 12 168 65 221 6.58e-97 304
MS.gene07128.t1 AT2G02070 81.529 157 29 0 12 168 65 221 6.58e-97 304
MS.gene07128.t1 AT2G02080 81.046 153 29 0 9 161 64 216 1.25e-96 300
MS.gene07128.t1 AT2G02080 81.046 153 29 0 9 161 64 216 1.25e-96 300
MS.gene07128.t1 AT2G02080 81.046 153 29 0 9 161 64 216 1.25e-96 300
MS.gene07128.t1 AT2G02080 81.046 153 29 0 9 161 64 216 1.25e-96 300
MS.gene07128.t1 AT5G03150 83.871 155 24 1 9 162 63 217 1.86e-96 300
MS.gene07128.t1 AT3G45260 81.818 154 27 1 9 161 49 202 3.53e-95 295
MS.gene07128.t1 AT3G45260 81.818 154 27 1 9 161 49 202 3.53e-95 295
MS.gene07128.t1 AT3G13810 83.766 154 24 1 9 161 61 214 1.75e-94 294
MS.gene07128.t1 AT3G13810 83.766 154 24 1 9 161 75 228 2.62e-94 294
MS.gene07128.t1 AT3G13810 83.766 154 24 1 9 161 80 233 2.80e-94 294
MS.gene07128.t1 AT3G13810 83.766 154 24 1 9 161 80 233 2.80e-94 294
MS.gene07128.t1 AT3G13810 81.875 160 27 2 4 161 61 220 8.37e-94 293
MS.gene07128.t1 AT3G13810 81.875 160 27 2 4 161 75 234 1.07e-93 293
MS.gene07128.t1 AT4G02670 75.439 171 38 2 9 175 63 233 1.30e-93 289
MS.gene07128.t1 AT4G02670 75.439 171 38 2 9 175 65 235 1.47e-93 289
MS.gene07128.t1 AT5G60470 75.926 162 36 2 3 161 37 198 5.64e-92 286
MS.gene07128.t1 AT5G60470 78.571 154 32 1 9 161 54 207 1.02e-91 286
MS.gene07128.t1 AT5G60470 78.571 154 32 1 9 161 50 203 1.17e-91 286
MS.gene07128.t1 AT2G02080 81.295 139 26 0 23 161 1 139 6.03e-89 278
MS.gene07128.t1 AT2G02080 81.295 139 26 0 23 161 1 139 6.03e-89 278
MS.gene07128.t1 AT1G68130 67.123 146 46 2 9 152 51 196 4.30e-69 226
MS.gene07128.t1 AT2G01940 66.216 148 48 2 9 154 54 201 9.51e-69 226
MS.gene07128.t1 AT1G25250 65.306 147 48 2 9 152 20 166 5.78e-68 221
MS.gene07128.t1 AT1G25250 65.306 147 48 2 9 152 43 189 7.09e-68 222
MS.gene07128.t1 AT2G01940 65.101 149 49 3 9 154 54 202 8.72e-65 216
MS.gene07128.t1 AT1G68130 64.545 110 37 2 45 152 1 110 2.36e-46 164
MS.gene07128.t1 AT2G01940 64.286 112 38 2 45 154 1 112 3.63e-46 164
MS.gene07128.t1 AT1G25250 62.162 111 39 2 45 152 1 111 8.25e-45 159
MS.gene07128.t1 AT5G22890 36.000 150 82 4 13 148 202 351 1.65e-23 102
MS.gene07128.t1 AT1G34370 33.333 153 88 3 13 151 19 171 3.82e-23 99.4
MS.gene07128.t1 AT1G34370 33.333 153 88 3 13 151 229 381 1.09e-22 101
MS.gene07128.t1 AT1G34370 33.333 153 88 3 13 151 229 381 1.09e-22 101
MS.gene07128.t1 AT3G20880 37.143 140 76 6 22 151 250 387 7.62e-20 92.0
MS.gene07128.t1 AT1G51220 33.775 151 84 5 10 151 166 309 1.15e-19 90.5
MS.gene07128.t1 AT3G57670 34.437 151 83 5 10 151 205 348 3.35e-19 89.7
MS.gene07128.t1 AT1G13290 35.862 145 79 7 22 154 95 237 6.26e-19 87.8
MS.gene07128.t1 AT1G08290 33.540 161 88 7 8 151 154 312 1.26e-17 84.3
MS.gene07128.t1 AT1G34790 30.968 155 95 5 7 151 124 276 4.64e-17 82.0

Find 96 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAGTCCTAATCATGTTTC+TGG 0.126378 7.1:+5417391 MS.gene07128:CDS
ATTATCTCCAACAACATTAA+TGG 0.225501 7.1:+5416139 MS.gene07128:CDS
TGCATTTGGCTTTGCAAGTT+TGG 0.264117 7.1:-5416971 None:intergenic
CAGCAATGGAGAAATCAATT+TGG 0.264385 7.1:+5417827 MS.gene07128:CDS
ATTGCTGTACCTAGAAAATA+TGG 0.277676 7.1:-5416501 None:intergenic
GTCCATGATTTCTTGGGAAT+TGG 0.293303 7.1:+5417694 MS.gene07128:CDS
GGCAACAGTCCATGATTTCT+TGG 0.325473 7.1:+5417687 MS.gene07128:CDS
TTGGAGCATGTTCTTGAGTT+GGG 0.332417 7.1:-5417084 None:intergenic
GTAATTGAAGCTGTTGGAAT+TGG 0.337918 7.1:-5417221 None:intergenic
TCTACAATGAATAATGATAT+TGG 0.357969 7.1:+5417586 MS.gene07128:CDS
AATAATGATATTGGAATGTT+TGG 0.379983 7.1:+5417595 MS.gene07128:CDS
TTTGTTGCCATTAATGTTGT+TGG 0.382808 7.1:-5416146 None:intergenic
TCTGAGGAAGTGTTGGAAAC+AGG 0.383083 7.1:-5417022 None:intergenic
GCAAACATGGCGAGAAGAAA+TGG 0.383718 7.1:+5416381 MS.gene07128:CDS
AGCAATGGAGAAATCAATTT+GGG 0.385884 7.1:+5417828 MS.gene07128:CDS
GTTCATAAGAGGGTTGGTTT+TGG 0.388862 7.1:-5417435 None:intergenic
AAGTGCAGATGTGAAGAAAA+AGG 0.388942 7.1:+5416271 MS.gene07128:CDS
CGTGCATTAGGTGACCTTAC+TGG 0.399967 7.1:+5416338 MS.gene07128:CDS
CACAATCCAGCTCGTGCATT+AGG 0.407149 7.1:+5416326 MS.gene07128:CDS
ATTTCTTCTCGCCATGTTTG+CGG 0.411811 7.1:-5416379 None:intergenic
GCATGCCACTGGTTAATCCT+TGG 0.413966 7.1:-5416946 None:intergenic
TAGAGATAGGATCATGCATT+TGG 0.417757 7.1:-5416985 None:intergenic
TGGATTAAAGTGTTCATAAG+AGG 0.422907 7.1:-5417446 None:intergenic
TTTAGCGGCATGGTAGAGAT+AGG 0.433827 7.1:-5416998 None:intergenic
ACCAGAAAACATGTGGTACT+AGG 0.442303 7.1:+5416456 MS.gene07128:CDS
TGAACCGCAGCAACAAAGAT+TGG 0.444677 7.1:+5417738 MS.gene07128:CDS
CATGATTTCTTGGGAATTGG+AGG 0.445123 7.1:+5417697 MS.gene07128:CDS
TTCGGTGTAACTGAAGATTC+TGG 0.450568 7.1:-5416211 None:intergenic
ATGGAAGATTGTGACCTCTT+CGG 0.458250 7.1:-5416229 None:intergenic
GCAACAGTCCATGATTTCTT+GGG 0.459975 7.1:+5417688 MS.gene07128:CDS
CATGCCACCACATGCATTGT+TGG 0.462483 7.1:-5417122 None:intergenic
CTCCAATTCCCAAGAAATCA+TGG 0.464360 7.1:-5417696 None:intergenic
AGTTGAAGGGTTGAAGAAGA+TGG 0.465582 7.1:-5417193 None:intergenic
ATAGAACCAGAAACATGATT+AGG 0.468762 7.1:-5417397 None:intergenic
GGTGCTACTGCAAGCAATAG+TGG 0.468938 7.1:+5417328 MS.gene07128:CDS
TCTAACATGGCTGGTGTTAG+TGG 0.470215 7.1:+5417484 MS.gene07128:CDS
GATACGCTGTTCAATCAGAT+TGG 0.476113 7.1:+5416426 MS.gene07128:CDS
TGGAATTGGAACTAAGTTGA+AGG 0.481061 7.1:-5417207 None:intergenic
GTTGGAGCATGTTCTTGAGT+TGG 0.484302 7.1:-5417085 None:intergenic
AATTGTTCAAATTTGATACA+TGG 0.491018 7.1:+5417655 MS.gene07128:CDS
AGCATTAAGTCAACAGAGGT+TGG 0.491230 7.1:+5417762 MS.gene07128:CDS
GTTTAATTCTGAGGAAGTGT+TGG 0.503695 7.1:-5417029 None:intergenic
CAAGTTTGGTGGCATGCCAC+TGG 0.504812 7.1:-5416957 None:intergenic
GATATTGGAATGTTTGGTCA+TGG 0.511947 7.1:+5417601 MS.gene07128:CDS
ACAATCTTCCATGGAAACTT+AGG 0.513491 7.1:+5416240 MS.gene07128:CDS
TAAAGTGTTCATAAGAGGGT+TGG 0.514305 7.1:-5417441 None:intergenic
GATGAAGAATGTTGCACAAG+AGG 0.514880 7.1:+5417627 MS.gene07128:CDS
TTGGTTGATCTGAATGATGT+TGG 0.518626 7.1:-5417103 None:intergenic
CGCTGTTCAATCAGATTGGA+AGG 0.519515 7.1:+5416430 MS.gene07128:CDS
GTTCTTTGCCTAAGTTTCCA+TGG 0.520812 7.1:-5416248 None:intergenic
ATTGAAGTAATTGAAGCTGT+TGG 0.522656 7.1:-5417227 None:intergenic
GAAAAGCTTTGTTAGTAGCA+TGG 0.526473 7.1:+5417369 MS.gene07128:CDS
TGGAGGACTAATTGCTGGCA+TGG 0.527954 7.1:+5417261 MS.gene07128:CDS
CCAGAAAACATGTGGTACTA+GGG 0.530598 7.1:+5416457 MS.gene07128:CDS
ATTTGGCTTTGCAAGTTTGG+TGG 0.531585 7.1:-5416968 None:intergenic
TGGTGAACACATGATGGCTC+AGG 0.534078 7.1:-5416305 None:intergenic
ATAGTCATTGTTTAATTCTG+AGG 0.543313 7.1:-5417038 None:intergenic
GGTTGAAGAAGATGGAGGCA+AGG 0.548129 7.1:-5417185 None:intergenic
ATGGCTGGTGTTAGTGGTGG+AGG 0.549455 7.1:+5417490 MS.gene07128:CDS
TGCTGGCATGGCTCAAATGT+CGG 0.549729 7.1:+5417273 MS.gene07128:CDS
AGGTCACCTAATGCACGAGC+TGG 0.556111 7.1:-5416332 None:intergenic
GGCATGTTCTCAACTAGTGC+AGG 0.558296 7.1:+5417139 MS.gene07128:CDS
TCATCATCATCTTCCACATG+AGG 0.560330 7.1:+5417801 MS.gene07128:CDS
TGGAGCATGTTCTTGAGTTG+GGG 0.560364 7.1:-5417083 None:intergenic
CATGAATTATCTAACATGGC+TGG 0.563778 7.1:+5417475 MS.gene07128:CDS
GGATTAAAGTGTTCATAAGA+GGG 0.569779 7.1:-5417445 None:intergenic
GAAGAGGTCACAATCTTCCA+TGG 0.574717 7.1:+5416231 MS.gene07128:CDS
GCTTCCAATCTTTGTTGCTG+CGG 0.575223 7.1:-5417742 None:intergenic
TCCATTGCTGAATCCTCATG+TGG 0.577321 7.1:-5417814 None:intergenic
TGCATCACAGAATGCTCTGT+GGG 0.579430 7.1:-5416897 None:intergenic
AATAGATCCTACTGCTGAAG+TGG 0.580873 7.1:+5416112 MS.gene07128:CDS
AGGGAATACAAATGTGATTG+TGG 0.590905 7.1:+5416476 MS.gene07128:CDS
GTGCTACTGCAAGCAATAGT+GGG 0.592488 7.1:+5417329 MS.gene07128:CDS
TTAGATAATTCATGCTGCAG+TGG 0.592945 7.1:-5417466 None:intergenic
GGAATTGGAACTAAGTTGAA+GGG 0.596686 7.1:-5417206 None:intergenic
AATGCAACCACTTCAGCAGT+AGG 0.598028 7.1:-5416119 None:intergenic
TGAAGGGTTGAAGAAGATGG+AGG 0.598478 7.1:-5417190 None:intergenic
TCCACATGAGGATTCAGCAA+TGG 0.616123 7.1:+5417813 MS.gene07128:CDS
CTAATGCACGAGCTGGATTG+TGG 0.622870 7.1:-5416325 None:intergenic
AATCTTCAGTTACACCGAAG+AGG 0.641075 7.1:+5416215 MS.gene07128:CDS
ATGCAACAAGGGATTTCAGA+GGG 0.641353 7.1:+5416187 MS.gene07128:CDS
AACATGGCTGGTGTTAGTGG+TGG 0.642397 7.1:+5417487 MS.gene07128:CDS
TCAACCAACAATGCATGTGG+TGG 0.656711 7.1:+5417118 MS.gene07128:CDS
TATGCAACAAGGGATTTCAG+AGG 0.657445 7.1:+5416186 MS.gene07128:CDS
GGATTGTGGTGAACACATGA+TGG 0.659836 7.1:-5416311 None:intergenic
AGATCAACCAACAATGCATG+TGG 0.667821 7.1:+5417115 MS.gene07128:CDS
GCAGCATGAATTATCTAACA+TGG 0.668171 7.1:+5417471 MS.gene07128:CDS
TGGAAGCATTAAGTCAACAG+AGG 0.675968 7.1:+5417758 MS.gene07128:CDS
TTTGATACATGGAAGTGATG+TGG 0.683521 7.1:+5417666 MS.gene07128:CDS
ATGCATCACAGAATGCTCTG+TGG 0.684328 7.1:-5416898 None:intergenic
GTGTGTGAGATATGCAACAA+GGG 0.694352 7.1:+5416176 MS.gene07128:CDS
GAAAACAACAGAGTAAACCA+AGG 0.707069 7.1:+5416929 MS.gene07128:CDS
AAGGCTCACCAGAAAACATG+TGG 0.716558 7.1:+5416449 MS.gene07128:CDS
GTAAACCAAGGATTAACCAG+TGG 0.716826 7.1:+5416941 MS.gene07128:CDS
GGTGAACACATGATGGCTCA+GGG 0.717782 7.1:-5416304 None:intergenic
TGTGTGTGAGATATGCAACA+AGG 0.725588 7.1:+5416175 MS.gene07128:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTAATAATTTGCATAAT+TGG + chr7.1:5416690-5416709 MS.gene07128:intron 10.0%
!!! AAAATATGTTTTCCATTTTT+AGG - chr7.1:5416637-5416656 None:intergenic 15.0%
!! AATAATGATATTGGAATGTT+TGG + chr7.1:5417595-5417614 MS.gene07128:CDS 20.0%
!! AATTGTTCAAATTTGATACA+TGG + chr7.1:5417655-5417674 MS.gene07128:CDS 20.0%
!! TACTTCAATGACAATAAAAA+TGG + chr7.1:5417241-5417260 MS.gene07128:CDS 20.0%
!! TCTACAATGAATAATGATAT+TGG + chr7.1:5417586-5417605 MS.gene07128:CDS 20.0%
!!! TAATATTTAGAATGCATGTT+TGG - chr7.1:5416812-5416831 None:intergenic 20.0%
! AATTGGATTGAAATCGAATT+TGG + chr7.1:5416707-5416726 MS.gene07128:intron 25.0%
! ATAGTCATTGTTTAATTCTG+AGG - chr7.1:5417041-5417060 None:intergenic 25.0%
! ATTATCTCCAACAACATTAA+TGG + chr7.1:5416139-5416158 MS.gene07128:CDS 25.0%
! TGAAACAAAGTGAATACAAT+AGG + chr7.1:5416611-5416630 MS.gene07128:intron 25.0%
! TTCAATGACAATAAAAATGG+AGG + chr7.1:5417244-5417263 MS.gene07128:CDS 25.0%
! TTTGTTACAAATATTTGTGC+AGG + chr7.1:5416561-5416580 MS.gene07128:intron 25.0%
!!! GTTGTTCTTTTTGAAACAAT+TGG - chr7.1:5417528-5417547 None:intergenic 25.0%
AGCAATGGAGAAATCAATTT+GGG + chr7.1:5417828-5417847 MS.gene07128:CDS 30.0%
ATAGAACCAGAAACATGATT+AGG - chr7.1:5417400-5417419 None:intergenic 30.0%
ATTGAAGTAATTGAAGCTGT+TGG - chr7.1:5417230-5417249 None:intergenic 30.0%
ATTGCTGTACCTAGAAAATA+TGG - chr7.1:5416504-5416523 None:intergenic 30.0%
CCTGTGTTATACAGAAAAAT+AGG - chr7.1:5416861-5416880 None:intergenic 30.0%
GAATACAATAGGCCTAAAAA+TGG + chr7.1:5416622-5416641 MS.gene07128:intron 30.0%
TTTGTTGCCATTAATGTTGT+TGG - chr7.1:5416149-5416168 None:intergenic 30.0%
! ATTGTGGAACCATATTTTCT+AGG + chr7.1:5416492-5416511 MS.gene07128:CDS 30.0%
! GGATTAAAGTGTTCATAAGA+GGG - chr7.1:5417448-5417467 None:intergenic 30.0%
! TGGATTAAAGTGTTCATAAG+AGG - chr7.1:5417449-5417468 None:intergenic 30.0%
!! CCTATTTTTCTGTATAACAC+AGG + chr7.1:5416858-5416877 MS.gene07128:intron 30.0%
!!! AATGTTTTTTGATGCCAGTA+AGG - chr7.1:5416355-5416374 None:intergenic 30.0%
AAAAATGGAGGACTAATTGC+TGG + chr7.1:5417256-5417275 MS.gene07128:CDS 35.0%
AAGTGCAGATGTGAAGAAAA+AGG + chr7.1:5416271-5416290 MS.gene07128:CDS 35.0%
ACAATCTTCCATGGAAACTT+AGG + chr7.1:5416240-5416259 MS.gene07128:CDS 35.0%
ACTACAAAAAGCAGCACAAA+TGG + chr7.1:5417306-5417325 MS.gene07128:CDS 35.0%
AGGGAATACAAATGTGATTG+TGG + chr7.1:5416476-5416495 MS.gene07128:CDS 35.0%
CAGCAATGGAGAAATCAATT+TGG + chr7.1:5417827-5417846 MS.gene07128:CDS 35.0%
CATGAATTATCTAACATGGC+TGG + chr7.1:5417475-5417494 MS.gene07128:CDS 35.0%
CTACAAAAAGCAGCACAAAT+GGG + chr7.1:5417307-5417326 MS.gene07128:CDS 35.0%
GAAAACAACAGAGTAAACCA+AGG + chr7.1:5416929-5416948 MS.gene07128:CDS 35.0%
GATATTGGAATGTTTGGTCA+TGG + chr7.1:5417601-5417620 MS.gene07128:CDS 35.0%
GCAGCATGAATTATCTAACA+TGG + chr7.1:5417471-5417490 MS.gene07128:CDS 35.0%
GTAATTGAAGCTGTTGGAAT+TGG - chr7.1:5417224-5417243 None:intergenic 35.0%
GTTAGTCCTAATCATGTTTC+TGG + chr7.1:5417391-5417410 MS.gene07128:CDS 35.0%
TAGAGATAGGATCATGCATT+TGG - chr7.1:5416988-5417007 None:intergenic 35.0%
TTAGATAATTCATGCTGCAG+TGG - chr7.1:5417469-5417488 None:intergenic 35.0%
TTGGTTGATCTGAATGATGT+TGG - chr7.1:5417106-5417125 None:intergenic 35.0%
TTTGATACATGGAAGTGATG+TGG + chr7.1:5417666-5417685 MS.gene07128:CDS 35.0%
! AACAAAGCTTTTCTGCATCA+TGG - chr7.1:5417362-5417381 None:intergenic 35.0%
! AGAATGCATGTTTGGAATCA+GGG - chr7.1:5416804-5416823 None:intergenic 35.0%
! GGAATTGGAACTAAGTTGAA+GGG - chr7.1:5417209-5417228 None:intergenic 35.0%
! GGGATCTTAGTGAGTTTTTA+GGG - chr7.1:5417066-5417085 None:intergenic 35.0%
! GTTTAATTCTGAGGAAGTGT+TGG - chr7.1:5417032-5417051 None:intergenic 35.0%
! TAAAGTGTTCATAAGAGGGT+TGG - chr7.1:5417444-5417463 None:intergenic 35.0%
! TAGAATGCATGTTTGGAATC+AGG - chr7.1:5416805-5416824 None:intergenic 35.0%
! TGGAATTGGAACTAAGTTGA+AGG - chr7.1:5417210-5417229 None:intergenic 35.0%
!! AAACATTTTAGCCGCAAACA+TGG + chr7.1:5416368-5416387 MS.gene07128:CDS 35.0%
!! GAAAAGCTTTGTTAGTAGCA+TGG + chr7.1:5417369-5417388 MS.gene07128:CDS 35.0%
!!! TGCTGCTTTTTGTAGTAAAG+CGG - chr7.1:5417302-5417321 None:intergenic 35.0%
!!! TTTTCCGCCTTATTTTCACA+CGG + chr7.1:5416535-5416554 MS.gene07128:intron 35.0%
AATAGATCCTACTGCTGAAG+TGG + chr7.1:5416112-5416131 MS.gene07128:CDS 40.0%
AATCTTCAGTTACACCGAAG+AGG + chr7.1:5416215-5416234 MS.gene07128:CDS 40.0%
ACCAGAAAACATGTGGTACT+AGG + chr7.1:5416456-5416475 MS.gene07128:CDS 40.0%
AGATCAACCAACAATGCATG+TGG + chr7.1:5417115-5417134 MS.gene07128:CDS 40.0%
AGCATTAAGTCAACAGAGGT+TGG + chr7.1:5417762-5417781 MS.gene07128:CDS 40.0%
AGTTGAAGGGTTGAAGAAGA+TGG - chr7.1:5417196-5417215 None:intergenic 40.0%
ATGCAACAAGGGATTTCAGA+GGG + chr7.1:5416187-5416206 MS.gene07128:CDS 40.0%
ATGGAAGATTGTGACCTCTT+CGG - chr7.1:5416232-5416251 None:intergenic 40.0%
ATTTCTTCTCGCCATGTTTG+CGG - chr7.1:5416382-5416401 None:intergenic 40.0%
CAAATCGCCGTGTGAAAATA+AGG - chr7.1:5416545-5416564 None:intergenic 40.0%
CATGATTTCTTGGGAATTGG+AGG + chr7.1:5417697-5417716 MS.gene07128:CDS 40.0%
CCAGAAAACATGTGGTACTA+GGG + chr7.1:5416457-5416476 MS.gene07128:CDS 40.0%
CTCCAATTCCCAAGAAATCA+TGG - chr7.1:5417699-5417718 None:intergenic 40.0%
GATACGCTGTTCAATCAGAT+TGG + chr7.1:5416426-5416445 MS.gene07128:CDS 40.0%
GATGAAGAATGTTGCACAAG+AGG + chr7.1:5417627-5417646 MS.gene07128:CDS 40.0%
GCAACAGTCCATGATTTCTT+GGG + chr7.1:5417688-5417707 MS.gene07128:CDS 40.0%
GTAAACCAAGGATTAACCAG+TGG + chr7.1:5416941-5416960 MS.gene07128:CDS 40.0%
GTCCATGATTTCTTGGGAAT+TGG + chr7.1:5417694-5417713 MS.gene07128:CDS 40.0%
GTGTGTGAGATATGCAACAA+GGG + chr7.1:5416176-5416195 MS.gene07128:CDS 40.0%
GTTCTTTGCCTAAGTTTCCA+TGG - chr7.1:5416251-5416270 None:intergenic 40.0%
TATGCAACAAGGGATTTCAG+AGG + chr7.1:5416186-5416205 MS.gene07128:CDS 40.0%
TCATCATCATCTTCCACATG+AGG + chr7.1:5417801-5417820 MS.gene07128:CDS 40.0%
TGTGTGTGAGATATGCAACA+AGG + chr7.1:5416175-5416194 MS.gene07128:CDS 40.0%
TTGGAGCATGTTCTTGAGTT+GGG - chr7.1:5417087-5417106 None:intergenic 40.0%
! AAGATGGAGGCAAGGTTTTT+GGG - chr7.1:5417180-5417199 None:intergenic 40.0%
! GGGGATCTTAGTGAGTTTTT+AGG - chr7.1:5417067-5417086 None:intergenic 40.0%
! TTCGGTGTAACTGAAGATTC+TGG - chr7.1:5416214-5416233 None:intergenic 40.0%
!! ATTTGGCTTTGCAAGTTTGG+TGG - chr7.1:5416971-5416990 None:intergenic 40.0%
!! GTGTTGGAAACAGGTTTTAG+CGG - chr7.1:5417016-5417035 None:intergenic 40.0%
!! TGCATTTGGCTTTGCAAGTT+TGG - chr7.1:5416974-5416993 None:intergenic 40.0%
!! TGGAAGCATTAAGTCAACAG+AGG + chr7.1:5417758-5417777 MS.gene07128:CDS 40.0%
!!! GTTCATAAGAGGGTTGGTTT+TGG - chr7.1:5417438-5417457 None:intergenic 40.0%
AAGGCTCACCAGAAAACATG+TGG + chr7.1:5416449-5416468 MS.gene07128:CDS 45.0%
AATGCAACCACTTCAGCAGT+AGG - chr7.1:5416122-5416141 None:intergenic 45.0%
ATCGCCGTGTGAAAATAAGG+CGG - chr7.1:5416542-5416561 None:intergenic 45.0%
ATGCATCACAGAATGCTCTG+TGG - chr7.1:5416901-5416920 None:intergenic 45.0%
CGCTGTTCAATCAGATTGGA+AGG + chr7.1:5416430-5416449 MS.gene07128:CDS 45.0%
GAAGAGGTCACAATCTTCCA+TGG + chr7.1:5416231-5416250 MS.gene07128:CDS 45.0%
GCAAACATGGCGAGAAGAAA+TGG + chr7.1:5416381-5416400 MS.gene07128:CDS 45.0%
GCTTCCAATCTTTGTTGCTG+CGG - chr7.1:5417745-5417764 None:intergenic 45.0%
GGATTGTGGTGAACACATGA+TGG - chr7.1:5416314-5416333 None:intergenic 45.0%
GGCAACAGTCCATGATTTCT+TGG + chr7.1:5417687-5417706 MS.gene07128:CDS 45.0%
GTTGGAGCATGTTCTTGAGT+TGG - chr7.1:5417088-5417107 None:intergenic 45.0%
TCAACCAACAATGCATGTGG+TGG + chr7.1:5417118-5417137 MS.gene07128:CDS 45.0%
TCCACATGAGGATTCAGCAA+TGG + chr7.1:5417813-5417832 MS.gene07128:CDS 45.0%
TCCATTGCTGAATCCTCATG+TGG - chr7.1:5417817-5417836 None:intergenic 45.0%
TGAACCGCAGCAACAAAGAT+TGG + chr7.1:5417738-5417757 MS.gene07128:CDS 45.0%
TGAAGGGTTGAAGAAGATGG+AGG - chr7.1:5417193-5417212 None:intergenic 45.0%
TGCATCACAGAATGCTCTGT+GGG - chr7.1:5416900-5416919 None:intergenic 45.0%
TTTAGCGGCATGGTAGAGAT+AGG - chr7.1:5417001-5417020 None:intergenic 45.0%
! ACTAGTGCAGGTGCACTTTT+TGG + chr7.1:5417151-5417170 MS.gene07128:CDS 45.0%
! CCCTAGTACCACATGTTTTC+TGG - chr7.1:5416460-5416479 None:intergenic 45.0%
! GAAGATGGAGGCAAGGTTTT+TGG - chr7.1:5417181-5417200 None:intergenic 45.0%
! GTGCTACTGCAAGCAATAGT+GGG + chr7.1:5417329-5417348 MS.gene07128:CDS 45.0%
! TCTAACATGGCTGGTGTTAG+TGG + chr7.1:5417484-5417503 MS.gene07128:CDS 45.0%
! TGGAGCATGTTCTTGAGTTG+GGG - chr7.1:5417086-5417105 None:intergenic 45.0%
!! TCTGAGGAAGTGTTGGAAAC+AGG - chr7.1:5417025-5417044 None:intergenic 45.0%
CACAATCCAGCTCGTGCATT+AGG + chr7.1:5416326-5416345 MS.gene07128:CDS 50.0%
CATGCCACCACATGCATTGT+TGG - chr7.1:5417125-5417144 None:intergenic 50.0%
CGTGCATTAGGTGACCTTAC+TGG + chr7.1:5416338-5416357 MS.gene07128:CDS 50.0%
CTAATGCACGAGCTGGATTG+TGG - chr7.1:5416328-5416347 None:intergenic 50.0%
GGCATGTTCTCAACTAGTGC+AGG + chr7.1:5417139-5417158 MS.gene07128:CDS 50.0%
GGTGAACACATGATGGCTCA+GGG - chr7.1:5416307-5416326 None:intergenic 50.0%
GGTTGAAGAAGATGGAGGCA+AGG - chr7.1:5417188-5417207 None:intergenic 50.0%
TGCTGGCATGGCTCAAATGT+CGG + chr7.1:5417273-5417292 MS.gene07128:CDS 50.0%
TGGAGGACTAATTGCTGGCA+TGG + chr7.1:5417261-5417280 MS.gene07128:CDS 50.0%
TGGTGAACACATGATGGCTC+AGG - chr7.1:5416308-5416327 None:intergenic 50.0%
! AACATGGCTGGTGTTAGTGG+TGG + chr7.1:5417487-5417506 MS.gene07128:CDS 50.0%
! GCATGCCACTGGTTAATCCT+TGG - chr7.1:5416949-5416968 None:intergenic 50.0%
!! AGTGCAGGTGCACTTTTTGG+TGG + chr7.1:5417154-5417173 MS.gene07128:CDS 50.0%
!! GGAAACAGGTTTTAGCGGCA+TGG - chr7.1:5417011-5417030 None:intergenic 50.0%
!! GGTGCTACTGCAAGCAATAG+TGG + chr7.1:5417328-5417347 MS.gene07128:CDS 50.0%
AGGTCACCTAATGCACGAGC+TGG - chr7.1:5416335-5416354 None:intergenic 55.0%
! ATGGCTGGTGTTAGTGGTGG+AGG + chr7.1:5417490-5417509 MS.gene07128:CDS 55.0%
! CAAGTTTGGTGGCATGCCAC+TGG - chr7.1:5416960-5416979 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 5416092 5417858 5416092 ID=MS.gene07128
chr7.1 mRNA 5416092 5417858 5416092 ID=MS.gene07128.t1;Parent=MS.gene07128
chr7.1 exon 5416092 5416513 5416092 ID=MS.gene07128.t1.exon1;Parent=MS.gene07128.t1
chr7.1 CDS 5416092 5416513 5416092 ID=cds.MS.gene07128.t1;Parent=MS.gene07128.t1
chr7.1 exon 5416880 5417858 5416880 ID=MS.gene07128.t1.exon2;Parent=MS.gene07128.t1
chr7.1 CDS 5416880 5417858 5416880 ID=cds.MS.gene07128.t1;Parent=MS.gene07128.t1
Gene Sequence

>MS.gene07128

ATGGATGATGTATTTTATGAAATAGATCCTACTGCTGAAGTGGTTGCATTATCTCCAACAACATTAATGGCAACAAATAGATTTGTGTGTGAGATATGCAACAAGGGATTTCAGAGGGACCAGAATCTTCAGTTACACCGAAGAGGTCACAATCTTCCATGGAAACTTAGGCAAAGAACAAGTGCAGATGTGAAGAAAAAGGTGTATGTGTGCCCTGAGCCATCATGTGTTCACCACAATCCAGCTCGTGCATTAGGTGACCTTACTGGCATCAAAAAACATTTTAGCCGCAAACATGGCGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATACGCTGTTCAATCAGATTGGAAGGCTCACCAGAAAACATGTGGTACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCTAGGTACAGCAATAACATTCAAATTTTTCCGCCTTATTTTCACACGGCGATTTGTTACAAATATTTGTGCAGGCGTTTTGCGAACAAATATTTGAAAACATGAAACAAAGTGAATACAATAGGCCTAAAAATGGAAAACATATTTTTCAAATTAAACAACTGTTATTCTTCAAATTTACTAATTAATAATTTGCATAATTGGATTGAAATCGAATTTGGCAGAATCACTCTATGTCACATTTATTTTCATAAAAACTACACTTTTTAGCTTCAACAAAATCAGAGTGTAACCCTGATTCCAAACATGCATTCTAAATATTAAAATATCTTGTTGCATATGATATAAACCTATTTTTCTGTATAACACAGGAGAGACAGTTTTATAACCCACAGAGCATTCTGTGATGCATTAACTGAAGAAAACAACAGAGTAAACCAAGGATTAACCAGTGGCATGCCACCAAACTTGCAAAGCCAAATGCATGATCCTATCTCTACCATGCCGCTAAAACCTGTTTCCAACACTTCCTCAGAATTAAACAATGACTATGACCCTAAAAACTCACTAAGATCCCCAACTCAAGAACATGCTCCAACATCATTCAGATCAACCAACAATGCATGTGGTGGCATGTTCTCAACTAGTGCAGGTGCACTTTTTGGTGGCCCAAAAACCTTGCCTCCATCTTCTTCAACCCTTCAACTTAGTTCCAATTCCAACAGCTTCAATTACTTCAATGACAATAAAAATGGAGGACTAATTGCTGGCATGGCTCAAATGTCGGCAACCGCTTTACTACAAAAAGCAGCACAAATGGGTGCTACTGCAAGCAATAGTGGGAACTCTTCCATGATGCAGAAAAGCTTTGTTAGTAGCATGGTTAGTCCTAATCATGTTTCTGGTTCTATCATGATGCATCATAACCAAAACCAACCCTCTTATGAACACTTTAATCCACTGCAGCATGAATTATCTAACATGGCTGGTGTTAGTGGTGGAGGAGCATTTACTAACCAATTGTTTCAAAAAGAACAACAAGAAATTTCATTACTGTTTGATAACAATACTAATGTGTCTACAATGAATAATGATATTGGAATGTTTGGTCATGGATTGATGAAGAATGTTGCACAAGAGGTTAGTAATTGTTCAAATTTGATACATGGAAGTGATGTGGCAACAGTCCATGATTTCTTGGGAATTGGAGGTTCAAGCTCAAGTTTGCATGAACCGCAGCAACAAAGATTGGAAGCATTAAGTCAACAGAGGTTGGAAATTATGAATAATTTTCATCATCATCTTCCACATGAGGATTCAGCAATGGAGAAATCAATTTGGGATGTTTGA
Protein sequence

>MS.gene07128.t1

MDDVFYEIDPTAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSADVKKKVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQMHDPISTMPLKPVSNTSSELNNDYDPKNSLRSPTQEHAPTSFRSTNNACGGMFSTSAGALFGGPKTLPPSSSTLQLSSNSNSFNYFNDNKNGGLIAGMAQMSATALLQKAAQMGATASNSGNSSMMQKSFVSSMVSPNHVSGSIMMHHNQNQPSYEHFNPLQHELSNMAGVSGGGAFTNQLFQKEQQEISLLFDNNTNVSTMNNDIGMFGHGLMKNVAQEVSNCSNLIHGSDVATVHDFLGIGGSSSSLHEPQQQRLEALSQQRLEIMNNFHHHLPHEDSAMEKSIWDV