AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071350.t1 MTR_2g061030 95.166 331 11 3 1 329 1 328 0.0 571
MS.gene071350.t1 MTR_1g054285 52.786 341 86 13 1 327 1 280 2.87e-85 259
MS.gene071350.t1 MTR_7g093430 52.174 322 97 11 1 314 1 273 6.38e-83 253
MS.gene071350.t1 MTR_4g100550 56.349 252 81 6 75 325 22 245 1.96e-75 234
MS.gene071350.t1 MTR_5g013010 60.829 217 54 8 111 324 72 260 5.44e-70 220
MS.gene071350.t1 MTR_4g097600 76.119 134 29 1 180 313 109 239 7.06e-67 211
MS.gene071350.t1 MTR_8g006705 58.216 213 75 4 102 312 58 258 1.37e-62 202
MS.gene071350.t1 MTR_5g014890 63.462 156 50 2 187 339 113 264 4.36e-61 196
MS.gene071350.t1 MTR_1g017090 63.433 134 42 2 183 314 117 245 8.20e-53 176
MS.gene071350.t1 MTR_4g084750 66.129 124 35 2 196 312 59 182 4.50e-49 163
MS.gene071350.t1 MTR_3g103590 63.194 144 48 3 187 329 134 273 1.80e-44 154
MS.gene071350.t1 MTR_2g038625 54.545 132 57 2 201 330 82 212 5.87e-38 135
MS.gene071350.t1 MTR_2g038580 54.545 132 57 2 201 330 82 212 5.87e-38 135
MS.gene071350.t1 MTR_4g126900 51.799 139 52 3 203 338 90 216 1.00e-34 127
MS.gene071350.t1 MTR_5g013010 54.167 144 36 7 111 252 72 187 5.31e-30 114
MS.gene071350.t1 MTR_6g007647 42.105 114 66 0 201 314 33 146 1.52e-18 84.3
MS.gene071350.t1 MTR_6g007647 42.105 114 66 0 201 314 67 180 1.56e-18 84.7
MS.gene071350.t1 MTR_7g010020 45.946 111 55 3 187 293 67 176 1.59e-18 84.3
MS.gene071350.t1 MTR_6g011610 33.816 207 82 6 117 287 2 189 1.73e-18 84.3
MS.gene071350.t1 MTR_4g107650 44.355 124 63 2 171 288 59 182 2.74e-18 84.7
MS.gene071350.t1 MTR_1g061660 44.086 93 52 0 197 289 55 147 2.92e-18 82.8
MS.gene071350.t1 MTR_6g011610 41.860 129 50 3 166 287 60 170 5.49e-18 82.8
MS.gene071350.t1 MTR_7g103340 35.862 145 91 2 195 337 57 201 8.21e-18 81.6
MS.gene071350.t1 MTR_3g080100 43.119 109 55 1 187 288 6 114 1.90e-17 80.5
MS.gene071350.t1 MTR_5g039000 44.554 101 56 0 188 288 64 164 2.01e-17 81.6
MS.gene071350.t1 MTR_8g468210 38.411 151 73 4 151 294 37 174 2.37e-17 81.3
MS.gene071350.t1 MTR_3g080100 39.200 125 67 2 173 288 29 153 3.02e-17 80.5
MS.gene071350.t1 MTR_5g038280 38.194 144 77 4 153 287 40 180 3.64e-17 81.3
MS.gene071350.t1 MTR_3g086790 36.986 146 80 4 188 322 46 190 8.68e-17 80.1
MS.gene071350.t1 MTR_8g089895 46.875 96 44 1 200 288 53 148 4.73e-16 78.2
MS.gene071350.t1 MTR_8g469430 44.681 94 45 1 201 287 89 182 3.09e-15 75.5
MS.gene071350.t1 MTR_5g019650 45.882 85 46 0 201 285 53 137 4.91e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071350.t1 AT5G06710 50.151 331 136 8 1 322 1 311 1.05e-86 265
MS.gene071350.t1 AT3G60390 59.709 206 71 4 111 312 77 274 3.50e-68 216
MS.gene071350.t1 AT2G44910 55.405 222 70 3 104 316 78 279 2.34e-67 214
MS.gene071350.t1 AT4G37790 61.236 178 58 3 163 332 83 257 7.08e-65 207
MS.gene071350.t1 AT5G47370 51.481 270 96 11 72 331 17 261 1.66e-64 206
MS.gene071350.t1 AT4G16780 64.198 162 49 3 175 332 108 264 9.86e-61 196
MS.gene071350.t1 AT4G17460 51.709 234 91 7 90 319 39 254 2.32e-60 195
MS.gene071350.t1 AT2G22800 75.862 116 28 0 198 313 110 225 2.38e-59 192
MS.gene071350.t1 AT2G01430 57.042 142 59 2 187 328 125 264 1.86e-47 162
MS.gene071350.t1 AT1G70920 55.479 146 49 3 185 330 26 155 2.95e-41 142
MS.gene071350.t1 AT1G70920 55.479 146 49 3 185 330 56 185 3.80e-41 143
MS.gene071350.t1 AT5G06710 41.762 261 123 8 1 252 1 241 3.86e-40 142
MS.gene071350.t1 AT2G01430 63.636 66 24 0 187 252 125 190 6.96e-21 89.7
MS.gene071350.t1 AT5G06710 36.325 234 120 9 1 225 1 214 2.34e-19 86.3
MS.gene071350.t1 AT5G06710 36.325 234 120 9 1 225 1 214 2.34e-19 86.3
MS.gene071350.t1 AT5G03790 37.008 127 79 1 196 321 72 198 3.83e-18 82.8
MS.gene071350.t1 AT1G69780 44.554 101 56 0 188 288 72 172 2.36e-17 81.6
MS.gene071350.t1 AT1G26960 36.242 149 72 3 189 333 63 192 8.20e-17 79.3
MS.gene071350.t1 AT1G27045 51.852 81 38 1 187 266 10 90 3.56e-16 75.9
MS.gene071350.t1 AT1G27045 51.852 81 38 1 187 266 10 90 3.56e-16 75.9
MS.gene071350.t1 AT1G27045 51.852 81 38 1 187 266 2 82 4.18e-16 75.5
MS.gene071350.t1 AT1G27045 51.852 81 38 1 187 266 53 133 6.26e-16 76.3
MS.gene071350.t1 AT2G36610 40.196 102 53 1 196 289 66 167 8.55e-16 75.1
MS.gene071350.t1 AT5G15150 40.909 110 54 2 185 287 103 208 8.81e-16 77.4
MS.gene071350.t1 AT1G27045 51.852 81 38 1 187 266 53 133 1.22e-15 75.9
MS.gene071350.t1 AT2G18550 37.671 146 84 2 179 324 40 178 1.65e-15 75.1
MS.gene071350.t1 AT3G01220 42.453 106 55 2 189 290 77 180 1.93e-15 75.9
MS.gene071350.t1 AT3G01470 45.652 92 50 0 201 292 68 159 1.97e-15 75.9
MS.gene071350.t1 AT5G03790 37.190 121 68 1 196 308 72 192 3.19e-15 73.6
MS.gene071350.t1 AT5G65310 40.909 110 55 2 189 288 39 148 3.97e-15 75.1
MS.gene071350.t1 AT5G65310 40.909 110 55 2 189 288 57 166 4.33e-15 75.5
MS.gene071350.t1 AT2G22430 45.455 99 50 1 197 291 58 156 9.45e-15 74.3
MS.gene071350.t1 AT4G40060 39.669 121 67 2 175 291 35 153 3.03e-14 72.8
MS.gene071350.t1 AT4G36740 43.011 93 52 1 195 287 50 141 1.26e-12 66.6
MS.gene071350.t1 AT4G36740 43.011 93 52 1 195 287 51 142 1.30e-12 66.6
MS.gene071350.t1 AT2G46680 40.659 91 54 0 196 286 27 117 2.85e-12 66.2
MS.gene071350.t1 AT2G46680 40.659 91 54 0 196 286 27 117 3.26e-12 66.2

Find 70 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACCTTGCTCTTCTATTT+TGG 0.134685 2.1:-34322083 None:intergenic
AAAGCCTCTAATTGGATTAA+TGG 0.207556 2.1:+34320715 MS.gene071350:CDS
GACTCTTCAAAGCCTCTAAT+TGG 0.231354 2.1:+34320707 MS.gene071350:CDS
CTTTGTGTAGTACTAATAAT+TGG 0.238752 2.1:-34320803 None:intergenic
GGTAGGAGTTTGAGTGGTTC+AGG 0.247485 2.1:+34321310 MS.gene071350:CDS
AGTTGATGCAATACAGGATT+AGG 0.292885 2.1:-34320905 None:intergenic
AAGAAGATGCTGCACTATTC+GGG 0.307898 2.1:-34321246 None:intergenic
AATTTATTATCAACCGAGTT+TGG 0.329723 2.1:+34321136 MS.gene071350:CDS
GAAGCCTAAGCCAAGTTCTT+TGG 0.340212 2.1:-34320759 None:intergenic
AAAGAAGATGCTGCACTATT+CGG 0.346517 2.1:-34321247 None:intergenic
ACCGGCGACGGTGGTTGTTA+TGG 0.373808 2.1:+34321195 MS.gene071350:CDS
TTCAACACCACTTTATCAAT+TGG 0.386708 2.1:+34320779 MS.gene071350:CDS
GAAGAAACTTAGGCTCTCTA+AGG 0.396097 2.1:+34321438 MS.gene071350:CDS
CATCAAGCTTCCAAAGAACT+TGG 0.420365 2.1:+34320749 MS.gene071350:CDS
TGGAGGTTCTTCGAGGGGAT+TGG 0.420743 2.1:+34321156 MS.gene071350:CDS
AGATCAAGTTGATGCAATAC+AGG 0.427277 2.1:-34320911 None:intergenic
CACATAGTTAAAGTAGTTGC+TGG 0.454337 2.1:-34322385 None:intergenic
AAACACTAACAGAAGAGAAT+AGG 0.466193 2.1:+34322296 MS.gene071350:CDS
GCTTCCAAAGAACTTGGCTT+AGG 0.468530 2.1:+34320755 MS.gene071350:CDS
AATTGGACCAATTGATAAAG+TGG 0.476543 2.1:-34320786 None:intergenic
ATGGAGCTAGGTTTAAGCTT+AGG 0.480018 2.1:+34320683 MS.gene071350:CDS
CGTGGTTCCACCGGCGACGG+TGG 0.481596 2.1:+34321186 MS.gene071350:CDS
TTCCTCAACTCTCATTCCCA+TGG 0.491801 2.1:+34320936 MS.gene071350:CDS
TTTGGAACCAGACTTCTACT+TGG 0.497117 2.1:-34322065 None:intergenic
AATACTAGTGCCACAATCAA+TGG 0.499863 2.1:+34322460 MS.gene071350:CDS
GCTGGTAATTGCATGTTGAA+TGG 0.500603 2.1:-34322367 None:intergenic
AGTATTAGTGACTGAGGAAG+TGG 0.500829 2.1:-34322443 None:intergenic
GCCCTCGCCAAGTAGAAGTC+TGG 0.501753 2.1:+34322058 MS.gene071350:CDS
CCGAGTTTGGAGGTTCTTCG+AGG 0.505267 2.1:+34321149 MS.gene071350:CDS
CGAGTTTGGAGGTTCTTCGA+GGG 0.513702 2.1:+34321150 MS.gene071350:CDS
GTAACACAAGGAAGAAACTT+AGG 0.517327 2.1:+34321428 MS.gene071350:CDS
AGAAGAAGAAAAGACTCAAA+GGG 0.521032 2.1:+34320850 MS.gene071350:CDS
TGGAATCCTCCTTCTCAAAA+CGG 0.522286 2.1:+34320956 MS.gene071350:CDS
AAGAAGAAGAAAAGACTCAA+AGG 0.532446 2.1:+34320849 MS.gene071350:CDS
GATAACTGTGGTGTTGGTAA+TGG 0.532740 2.1:+34321406 MS.gene071350:CDS
GGATGTGAACGTGGTTCCAC+CGG 0.533881 2.1:+34321177 MS.gene071350:CDS
GTTGCAACACGTTCACAAGA+AGG 0.536936 2.1:-34322409 None:intergenic
CCTCGAAGAACCTCCAAACT+CGG 0.543733 2.1:-34321149 None:intergenic
TTATTATCAACCGAGTTTGG+AGG 0.547939 2.1:+34321139 MS.gene071350:CDS
GCCATAACAACCACCGTCGC+CGG 0.549269 2.1:-34321196 None:intergenic
AGGAGTTTGAGTGGTTCAGG+AGG 0.550877 2.1:+34321313 MS.gene071350:CDS
TTGCAACACGTTCACAAGAA+GGG 0.553307 2.1:-34322408 None:intergenic
ATGTACAGTCGAGGAGGAAG+TGG 0.554028 2.1:+34321286 MS.gene071350:CDS
AGTGGTGGTAGGAGTTTGAG+TGG 0.555829 2.1:+34321304 MS.gene071350:CDS
AGAAAAGAGATCATGGAGCT+AGG 0.556425 2.1:+34320671 None:intergenic
CACTAACAGAAGAGAATAGG+AGG 0.565496 2.1:+34322299 MS.gene071350:CDS
GAAGATGATAACTGTGGTGT+TGG 0.570473 2.1:+34321400 MS.gene071350:CDS
ATGGTGAAGGGTATGATCAA+AGG 0.575898 2.1:+34321356 MS.gene071350:CDS
TTTGAGAAGGAGGATTCCAT+GGG 0.580464 2.1:-34320952 None:intergenic
AACCAGACTTCTACTTGGCG+AGG 0.590253 2.1:-34322060 None:intergenic
ATAACAACCACCGTCGCCGG+TGG 0.592195 2.1:-34321193 None:intergenic
GAACGTGGTTCCACCGGCGA+CGG 0.601039 2.1:+34321183 MS.gene071350:CDS
AGTTCTTTGGAAGCTTGATG+AGG 0.611059 2.1:-34320746 None:intergenic
TACAGTCGAGGAGGAAGTGG+TGG 0.618589 2.1:+34321289 MS.gene071350:CDS
ATTGTTATTACCATTGATTG+TGG 0.625260 2.1:-34322470 None:intergenic
TTCCATGGGAATGAGAGTTG+AGG 0.625263 2.1:-34320938 None:intergenic
ACCAGACTTCTACTTGGCGA+GGG 0.626726 2.1:-34322059 None:intergenic
GAGGGGATTGGATGTGAACG+TGG 0.631637 2.1:+34321168 MS.gene071350:CDS
TGTTATGGCGAACGATGAGA+TGG 0.634044 2.1:+34321210 MS.gene071350:CDS
GTCGAGGAGGAAGTGGTGGT+AGG 0.639483 2.1:+34321293 MS.gene071350:CDS
GGAGTTTGAGTGGTTCAGGA+GGG 0.643496 2.1:+34321314 MS.gene071350:CDS
GGTTCCAAAATAGAAGAGCA+AGG 0.645595 2.1:+34322079 MS.gene071350:CDS
GAGTTTGGAGGTTCTTCGAG+GGG 0.648065 2.1:+34321151 MS.gene071350:CDS
AGAAGATGCTGCACTATTCG+GGG 0.651031 2.1:-34321245 None:intergenic
GGCACTAGTATTAGTGACTG+AGG 0.651032 2.1:-34322449 None:intergenic
GATCTATGCATGTACAGTCG+AGG 0.663378 2.1:+34321277 MS.gene071350:CDS
AGAGAATAGGAGGCTACACA+AGG 0.664591 2.1:+34322309 MS.gene071350:CDS
CTATGCATGTACAGTCGAGG+AGG 0.685551 2.1:+34321280 MS.gene071350:CDS
AGTGATGAAGATGATAACTG+TGG 0.745381 2.1:+34321394 MS.gene071350:CDS
GTGTTGGTAATGGTAACACA+AGG 0.792389 2.1:+34321416 MS.gene071350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAATAAAACAAATAAA+TGG - chr2.1:34321952-34321971 None:intergenic 10.0%
!! ACAAAATAAAACAAATAAAT+GGG - chr2.1:34321951-34321970 None:intergenic 10.0%
!!! TTTTTATAGATTTTTTTTTG+TGG - chr2.1:34321634-34321653 None:intergenic 10.0%
!!! TTTTTTGTTTAAAATACTAA+TGG + chr2.1:34321977-34321996 MS.gene071350:intron 10.0%
!! AAGAGTAAAAGATAAAATAT+TGG - chr2.1:34321007-34321026 None:intergenic 15.0%
!! AATATTCTATGTAATGTTAT+TGG + chr2.1:34321746-34321765 MS.gene071350:intron 15.0%
!! ATATCTCTAATATATAGTAT+TGG + chr2.1:34321789-34321808 MS.gene071350:intron 15.0%
!! CTATATATTAGAGATATATT+TGG - chr2.1:34321786-34321805 None:intergenic 15.0%
!!! ATAGAATATTTTCTTTTGAA+AGG - chr2.1:34321736-34321755 None:intergenic 15.0%
!!! ATTATTGTTTTTGCAATATT+AGG + chr2.1:34321112-34321131 MS.gene071350:intron 15.0%
!!! CAACTTTATTTTTTAAACTT+TGG + chr2.1:34322173-34322192 MS.gene071350:intron 15.0%
!!! TAAAATATTGGTAACTTTTT+AGG - chr2.1:34320995-34321014 None:intergenic 15.0%
!!! TAATCCTATTTTAAAAACAC+TGG - chr2.1:34321074-34321093 None:intergenic 20.0%
!!! TATAGATTTTTTTTTGTGGT+CGG - chr2.1:34321630-34321649 None:intergenic 20.0%
!!! TTGTTTAAAATACTAATGGT+TGG + chr2.1:34321981-34322000 MS.gene071350:intron 20.0%
! AAAATTATAGTCAAATGCAG+TGG + chr2.1:34322147-34322166 MS.gene071350:intron 25.0%
! AATTTATTATCAACCGAGTT+TGG + chr2.1:34321136-34321155 MS.gene071350:CDS 25.0%
! AGAGAAAAAAAAACACATAC+AGG - chr2.1:34321514-34321533 None:intergenic 25.0%
! ATAAATTTATGTTCTGATGC+AGG + chr2.1:34322221-34322240 MS.gene071350:intron 25.0%
! CTTTGTGTAGTACTAATAAT+TGG - chr2.1:34320806-34320825 None:intergenic 25.0%
! GAGAAAAAAAAACACATACA+GGG - chr2.1:34321513-34321532 None:intergenic 25.0%
! TGCATAAAAATATGCAAAGT+CGG + chr2.1:34321595-34321614 MS.gene071350:intron 25.0%
!! ATTGTTATTACCATTGATTG+TGG - chr2.1:34322473-34322492 None:intergenic 25.0%
!! ATTTTATGACAATTCTTCCT+TGG + chr2.1:34321924-34321943 MS.gene071350:intron 25.0%
!! TTTTCCATTAATCCAATTAG+AGG - chr2.1:34320722-34320741 None:intergenic 25.0%
!!! ATAGATTTTTTTTTGTGGTC+GGG - chr2.1:34321629-34321648 None:intergenic 25.0%
!!! GAAACCAGTGTTTTTAAAAT+AGG + chr2.1:34321067-34321086 MS.gene071350:intron 25.0%
AAAACAAATAAATGGGTCCA+AGG - chr2.1:34321944-34321963 None:intergenic 30.0%
AAACACTAACAGAAGAGAAT+AGG + chr2.1:34322296-34322315 MS.gene071350:CDS 30.0%
AAAGCCTCTAATTGGATTAA+TGG + chr2.1:34320715-34320734 MS.gene071350:CDS 30.0%
AAGAAGAAGAAAAGACTCAA+AGG + chr2.1:34320849-34320868 MS.gene071350:CDS 30.0%
AATTGGACCAATTGATAAAG+TGG - chr2.1:34320789-34320808 None:intergenic 30.0%
AGAAGAAGAAAAGACTCAAA+GGG + chr2.1:34320850-34320869 MS.gene071350:CDS 30.0%
CATAAAAATATGCAAAGTCG+GGG + chr2.1:34321597-34321616 MS.gene071350:intron 30.0%
GCATAAAAATATGCAAAGTC+GGG + chr2.1:34321596-34321615 MS.gene071350:intron 30.0%
TAGTATGTGTGGTATTAATC+TGG - chr2.1:34321663-34321682 None:intergenic 30.0%
TTCAACACCACTTTATCAAT+TGG + chr2.1:34320779-34320798 MS.gene071350:CDS 30.0%
!! ATTGGTAACTTTTTAGGAAG+TGG - chr2.1:34320989-34321008 None:intergenic 30.0%
!! TTGGTAACTTTTTAGGAAGT+GGG - chr2.1:34320988-34321007 None:intergenic 30.0%
AAAGAAGATGCTGCACTATT+CGG - chr2.1:34321250-34321269 None:intergenic 35.0%
AATACTAGTGCCACAATCAA+TGG + chr2.1:34322460-34322479 MS.gene071350:CDS 35.0%
AGTGATGAAGATGATAACTG+TGG + chr2.1:34321394-34321413 MS.gene071350:CDS 35.0%
CACATAGTTAAAGTAGTTGC+TGG - chr2.1:34322388-34322407 None:intergenic 35.0%
CTTGAGCATAACTCAGTTTA+TGG + chr2.1:34321568-34321587 MS.gene071350:intron 35.0%
GTAACACAAGGAAGAAACTT+AGG + chr2.1:34321428-34321447 MS.gene071350:CDS 35.0%
TAAACTGAGTTATGCTCAAG+AGG - chr2.1:34321568-34321587 None:intergenic 35.0%
TATCGACATGTTAGTATGTG+TGG - chr2.1:34321674-34321693 None:intergenic 35.0%
TGTGGTGTAGAAACAAAAAC+TGG + chr2.1:34322011-34322030 MS.gene071350:intron 35.0%
TTATTATCAACCGAGTTTGG+AGG + chr2.1:34321139-34321158 MS.gene071350:CDS 35.0%
! AACAAGAGAGAGTTTTCTGA+TGG + chr2.1:34321337-34321356 MS.gene071350:CDS 35.0%
! AGTTGATGCAATACAGGATT+AGG - chr2.1:34320908-34320927 None:intergenic 35.0%
! TGTACCTTGCTCTTCTATTT+TGG - chr2.1:34322086-34322105 None:intergenic 35.0%
!! AGATCAAGTTGATGCAATAC+AGG - chr2.1:34320914-34320933 None:intergenic 35.0%
AAGAAGATGCTGCACTATTC+GGG - chr2.1:34321249-34321268 None:intergenic 40.0%
AGTATTAGTGACTGAGGAAG+TGG - chr2.1:34322446-34322465 None:intergenic 40.0%
ATGGAGCTAGGTTTAAGCTT+AGG + chr2.1:34320683-34320702 MS.gene071350:CDS 40.0%
CACTAACAGAAGAGAATAGG+AGG + chr2.1:34322299-34322318 MS.gene071350:CDS 40.0%
CATCAAGCTTCCAAAGAACT+TGG + chr2.1:34320749-34320768 MS.gene071350:CDS 40.0%
CTAATGGTTGGACACAATTG+TGG + chr2.1:34321993-34322012 MS.gene071350:intron 40.0%
GAAGAAACTTAGGCTCTCTA+AGG + chr2.1:34321438-34321457 MS.gene071350:CDS 40.0%
GAAGATGATAACTGTGGTGT+TGG + chr2.1:34321400-34321419 MS.gene071350:CDS 40.0%
GACTCTTCAAAGCCTCTAAT+TGG + chr2.1:34320707-34320726 MS.gene071350:CDS 40.0%
GCTGGTAATTGCATGTTGAA+TGG - chr2.1:34322370-34322389 None:intergenic 40.0%
GGTTCCAAAATAGAAGAGCA+AGG + chr2.1:34322079-34322098 MS.gene071350:CDS 40.0%
TGGAATCCTCCTTCTCAAAA+CGG + chr2.1:34320956-34320975 MS.gene071350:CDS 40.0%
TTGCAACACGTTCACAAGAA+GGG - chr2.1:34322411-34322430 None:intergenic 40.0%
TTTGAGAAGGAGGATTCCAT+GGG - chr2.1:34320955-34320974 None:intergenic 40.0%
! AGTTCTTTGGAAGCTTGATG+AGG - chr2.1:34320749-34320768 None:intergenic 40.0%
! ATGGTGAAGGGTATGATCAA+AGG + chr2.1:34321356-34321375 MS.gene071350:CDS 40.0%
! TGCAGCATCTTCTTTTCAGA+TGG + chr2.1:34321255-34321274 MS.gene071350:CDS 40.0%
! TTTGGAACCAGACTTCTACT+TGG - chr2.1:34322068-34322087 None:intergenic 40.0%
!! AGAGAGTTTTCTGATGGTGA+AGG + chr2.1:34321343-34321362 MS.gene071350:CDS 40.0%
!! GAGAGTTTTCTGATGGTGAA+GGG + chr2.1:34321344-34321363 MS.gene071350:CDS 40.0%
!! GATAACTGTGGTGTTGGTAA+TGG + chr2.1:34321406-34321425 MS.gene071350:CDS 40.0%
!! GTGTTGGTAATGGTAACACA+AGG + chr2.1:34321416-34321435 MS.gene071350:CDS 40.0%
!! TTTTGAGAAGGAGGATTCCA+TGG - chr2.1:34320956-34320975 None:intergenic 40.0%
!!! TTGTTACCGTTTTGAGAAGG+AGG - chr2.1:34320965-34320984 None:intergenic 40.0%
AGAAGATGCTGCACTATTCG+GGG - chr2.1:34321248-34321267 None:intergenic 45.0%
AGAGAATAGGAGGCTACACA+AGG + chr2.1:34322309-34322328 MS.gene071350:CDS 45.0%
GAAGCCTAAGCCAAGTTCTT+TGG - chr2.1:34320762-34320781 None:intergenic 45.0%
GATCTATGCATGTACAGTCG+AGG + chr2.1:34321277-34321296 MS.gene071350:CDS 45.0%
GCTTCCAAAGAACTTGGCTT+AGG + chr2.1:34320755-34320774 MS.gene071350:CDS 45.0%
GGCACTAGTATTAGTGACTG+AGG - chr2.1:34322452-34322471 None:intergenic 45.0%
GTTGCAACACGTTCACAAGA+AGG - chr2.1:34322412-34322431 None:intergenic 45.0%
TGTTATGGCGAACGATGAGA+TGG + chr2.1:34321210-34321229 MS.gene071350:CDS 45.0%
TTCCATGGGAATGAGAGTTG+AGG - chr2.1:34320941-34320960 None:intergenic 45.0%
TTCCTCAACTCTCATTCCCA+TGG + chr2.1:34320936-34320955 MS.gene071350:CDS 45.0%
!!! GGGTTGTTACCGTTTTGAGA+AGG - chr2.1:34320968-34320987 None:intergenic 45.0%
AACCAGACTTCTACTTGGCG+AGG - chr2.1:34322063-34322082 None:intergenic 50.0%
ACCAGACTTCTACTTGGCGA+GGG - chr2.1:34322062-34322081 None:intergenic 50.0%
AGGAGTTTGAGTGGTTCAGG+AGG + chr2.1:34321313-34321332 MS.gene071350:CDS 50.0%
AGTGGTGGTAGGAGTTTGAG+TGG + chr2.1:34321304-34321323 MS.gene071350:CDS 50.0%
ATGTACAGTCGAGGAGGAAG+TGG + chr2.1:34321286-34321305 MS.gene071350:CDS 50.0%
CCTCGAAGAACCTCCAAACT+CGG - chr2.1:34321152-34321171 None:intergenic 50.0%
CGAGTTTGGAGGTTCTTCGA+GGG + chr2.1:34321150-34321169 MS.gene071350:CDS 50.0%
CTATGCATGTACAGTCGAGG+AGG + chr2.1:34321280-34321299 MS.gene071350:CDS 50.0%
GAGTTTGGAGGTTCTTCGAG+GGG + chr2.1:34321151-34321170 MS.gene071350:CDS 50.0%
GGAGTTTGAGTGGTTCAGGA+GGG + chr2.1:34321314-34321333 MS.gene071350:CDS 50.0%
GGTAGGAGTTTGAGTGGTTC+AGG + chr2.1:34321310-34321329 MS.gene071350:CDS 50.0%
CCGAGTTTGGAGGTTCTTCG+AGG + chr2.1:34321149-34321168 MS.gene071350:CDS 55.0%
GAGGGGATTGGATGTGAACG+TGG + chr2.1:34321168-34321187 MS.gene071350:CDS 55.0%
GGATGTGAACGTGGTTCCAC+CGG + chr2.1:34321177-34321196 MS.gene071350:CDS 55.0%
TACAGTCGAGGAGGAAGTGG+TGG + chr2.1:34321289-34321308 MS.gene071350:CDS 55.0%
TGGAGGTTCTTCGAGGGGAT+TGG + chr2.1:34321156-34321175 MS.gene071350:CDS 55.0%
ACCGGCGACGGTGGTTGTTA+TGG + chr2.1:34321195-34321214 MS.gene071350:CDS 60.0%
ATAACAACCACCGTCGCCGG+TGG - chr2.1:34321196-34321215 None:intergenic 60.0%
GCCATAACAACCACCGTCGC+CGG - chr2.1:34321199-34321218 None:intergenic 60.0%
GCCCTCGCCAAGTAGAAGTC+TGG + chr2.1:34322058-34322077 MS.gene071350:CDS 60.0%
GTCGAGGAGGAAGTGGTGGT+AGG + chr2.1:34321293-34321312 MS.gene071350:CDS 60.0%
GAACGTGGTTCCACCGGCGA+CGG + chr2.1:34321183-34321202 MS.gene071350:CDS 65.0%
CGTGGTTCCACCGGCGACGG+TGG + chr2.1:34321186-34321205 MS.gene071350:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 34320683 34322510 34320683 ID=MS.gene071350
chr2.1 mRNA 34320683 34322510 34320683 ID=MS.gene071350.t1;Parent=MS.gene071350
chr2.1 exon 34320683 34320977 34320683 ID=MS.gene071350.t1.exon1;Parent=MS.gene071350.t1
chr2.1 CDS 34320683 34320977 34320683 ID=cds.MS.gene071350.t1;Parent=MS.gene071350.t1
chr2.1 exon 34321134 34321513 34321134 ID=MS.gene071350.t1.exon2;Parent=MS.gene071350.t1
chr2.1 CDS 34321134 34321513 34321134 ID=cds.MS.gene071350.t1;Parent=MS.gene071350.t1
chr2.1 exon 34322021 34322100 34322021 ID=MS.gene071350.t1.exon3;Parent=MS.gene071350.t1
chr2.1 CDS 34322021 34322100 34322021 ID=cds.MS.gene071350.t1;Parent=MS.gene071350.t1
chr2.1 exon 34322243 34322510 34322243 ID=MS.gene071350.t1.exon4;Parent=MS.gene071350.t1
chr2.1 CDS 34322243 34322510 34322243 ID=cds.MS.gene071350.t1;Parent=MS.gene071350.t1
Gene Sequence

>MS.gene071350

ATGGAGCTAGGTTTAAGCTTAGGAGACTCTTCAAAGCCTCTAATTGGATTAATGGAAAAGCATCCTCATCAAGCTTCCAAAGAACTTGGCTTAGGCTTCAACACCACTTTATCAATTGGTCCAATTATTAGTACTACACAAAGAGATCAACTTCAACAACAACAACAAGAAGAAGAAAAGACTCAAAGGGACATCAACAACAACAGTAATAGAACTGAAAATCCTAATCCTGTATTGCATCAACTTGATCTTCTTCCTCAACTCTCATTCCCATGGAATCCTCCTTCTCAAAACGGTAACAACCCACTTCCTAAAAAGTTACCAATATTTTATCTTTTACTCTTGTTTTTTCTCTTATAAAATTTAACTAGTTATAGTGATGATGAAACCAGTGTTTTTAAAATAGGATTAAAAATAGAATCAGTACTTATTATTGTTTTTGCAATATTAGGTAATTTATTATCAACCGAGTTTGGAGGTTCTTCGAGGGGATTGGATGTGAACGTGGTTCCACCGGCGACGGTGGTTGTTATGGCGAACGATGAGATGGCGCTTTCGTCGTCCCCGAATAGTGCAGCATCTTCTTTTCAGATGGATCTATGCATGTACAGTCGAGGAGGAAGTGGTGGTAGGAGTTTGAGTGGTTCAGGAGGGAACAAGAGAGAGTTTTCTGATGGTGAAGGGTATGATCAAAGGAATTCTTCAAGAGTTAGTGATGAAGATGATAACTGTGGTGTTGGTAATGGTAACACAAGGAAGAAACTTAGGCTCTCTAAGGATCAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACATCACACTCTTAACCCTGTATGTGTTTTTTTTTCTCTCTCATGTGAAGTATAAATTAGTTTATATTGTCCTCTTGAGCATAACTCAGTTTATGGACGATGCATAAAAATATGCAAAGTCGGGGTTCAAACCCGACCACAAAAAAAAATCTATAAAAAATACTTCCAGATTAATACCACACATACTAACATGTCGATATTATGTCGATATCAATAATAAATCTATATATGTAATGTTCCTTTCAAAAGAAAATATTCTATGTAATGTTATTGGTGTCATAAGAAACACCAAATATATCTCTAATATATAGTATTGGTGTTATGAATGTTTCTACTTTAGATTGAATTGAAAAAAAAATGAATGTTTAAATTTTAACACAATTTTTTTTATTATACATTTTTTTGTACTAATTTTGTAATAAGATGAAAATTTTATGACAATTCTTCCTTGGACCCATTTATTTGTTTTATTTTGTTTTTGATTTTTTGTTTAAAATACTAATGGTTGGACACAATTGTGGTGTAGAAACAAAAACTGGCTCTTGCAAAACAACTCAATCTTCGCCCTCGCCAAGTAGAAGTCTGGTTCCAAAATAGAAGAGCAAGGTACAGATACACTTTGCTAATTTTGATAAATCATACTTAGATTAAAAAAATTATAGTCAAATGCAGTGGATACAACTTTATTTTTTAAACTTTGGATATGAAAATATATAATTTAATCATATAAATTTATGTTCTGATGCAGGACTAAGTTGAAACAAACAGAAGTAGATTGTGAATACTTAAAGAGATGCTGTGAAACACTAACAGAAGAGAATAGGAGGCTACACAAGGAACTTCAAGAATTAAGAGCTTTAAAAACTTCAAATCCATTCAACATGCAATTACCAGCAACTACTTTAACTATGTGCCCTTCTTGTGAACGTGTTGCAACAAATTCTACAGCCACTTCCTCAGTCACTAATACTAGTGCCACAATCAATGGTAATAACAATAACAACATTAACCAGTGA
Protein sequence

>MS.gene071350.t1

MELGLSLGDSSKPLIGLMEKHPHQASKELGLGFNTTLSIGPIISTTQRDQLQQQQQEEEKTQRDINNNSNRTENPNPVLHQLDLLPQLSFPWNPPSQNGNLLSTEFGGSSRGLDVNVVPPATVVVMANDEMALSSSPNSAASSFQMDLCMYSRGGSGGRSLSGSGGNKREFSDGEGYDQRNSSRVSDEDDNCGVGNGNTRKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFNMQLPATTLTMCPSCERVATNSTATSSVTNTSATINGNNNNNINQ