AlfalfaGEDB | MS.gene071353

M. sativa cultivar XinJiangDaYe / MS.gene071353

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071353.t1	GAU43000.1	66.3	285	52	3	290	535	1	280	3.00E-92	349.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071353.t1	Q9SZL8	26.2	195	115	5	103	269	54	247	3.6e-09	64.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071353.t1	A0A2Z6P1G1	66.3	285	52	3	290	535	1	280	2.2e-92	349.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene071353.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071353.t1	MTR_1g019850	83.815	173	15	1	78	237	26	198	1.24e-96	293
MS.gene071353.t1	MTR_2g024230	77.670	103	22	1	77	178	44	146	3.07e-47	162
MS.gene071353.t1	MTR_0853s0010	52.555	137	45	2	119	235	22	158	4.02e-38	138
MS.gene071353.t1	MTR_3g026060	84.314	51	8	0	481	531	23	73	5.28e-22	95.1
MS.gene071353.t1	MTR_1g047860	58.730	63	26	0	7	69	7	69	2.88e-16	77.8
MS.gene071353.t1	MTR_1g033820	62.500	48	18	0	119	166	24	71	1.06e-15	73.2
MS.gene071353.t1	MTR_6g048540	49.333	75	30	1	117	183	23	97	4.35e-13	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 101 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGCTACAATGTTTCA+GGG	0.533512	2.1:-34250527	MS.gene071353:CDS
AACAACCAACTACAACATAT+GGG	0.565454	2.1:-34248853	MS.gene071353:CDS
AACTCATTGTAATCAGCGGC+CGG	0.545931	2.1:+34248078	None:intergenic
AACTCCAAAACCTTCTTTCT+TGG	0.194532	2.1:+34250859	None:intergenic
AAGATAATGCCTTGTCTAGT+CGG	0.489104	2.1:-34250502	MS.gene071353:CDS
AAGCAGGGAAGAGAAGTAAA+TGG	0.304863	2.1:-34250694	MS.gene071353:CDS
AAGGAACTCATTGTAATCAG+CGG	0.679173	2.1:+34248074	None:intergenic
AATATTAGCTTCAGGTGACT+TGG	0.474696	2.1:+34250946	None:intergenic
AATCGATTATGTTTAGCAGG+TGG	0.579440	2.1:+34252940	None:intergenic
AATGGCCGTGGTGGACGGAA+TGG	0.517144	2.1:-34248252	MS.gene071353:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGTTGACAGCAAACTA+AGG	-	chr2.1:34248832-34248851	MS.gene071353:CDS	30.0%
AAAGTTGCTACAATGTTTCA+GGG	-	chr2.1:34250588-34250607	MS.gene071353:CDS	30.0%
AAATCCAATAGAGAAAGAGA+TGG	-	chr2.1:34248755-34248774	MS.gene071353:CDS	30.0%
AAATGGCATATCATACTTGT+TGG	+	chr2.1:34250869-34250888	None:intergenic	30.0%
AACAACCAACTACAACATAT+GGG	-	chr2.1:34252262-34252281	MS.gene071353:intron	30.0%
AACCGTATGATTAATAGATC+TGG	+	chr2.1:34249545-34249564	None:intergenic	30.0%
AATAAGTCAAGAAAGGAACT+TGG	-	chr2.1:34248347-34248366	MS.gene071353:intron	30.0%
AATGATAAATTTCTTCTGGG+TGG	-	chr2.1:34250777-34250796	MS.gene071353:CDS	30.0%
AGAAGAAGAAATCTTGATGT+GGG	-	chr2.1:34250663-34250682	MS.gene071353:CDS	30.0%
ATAAGTCAAGAAAGGAACTT+GGG	-	chr2.1:34248348-34248367	MS.gene071353:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	34248026	34253111	34248026	ID=MS.gene071353
chr2.1	mRNA	34248026	34253111	34248026	ID=MS.gene071353.t1;Parent=MS.gene071353
chr2.1	exon	34252879	34253111	34252879	ID=MS.gene071353.t1.exon1;Parent=MS.gene071353.t1
chr2.1	CDS	34252879	34253111	34252879	ID=cds.MS.gene071353.t1;Parent=MS.gene071353.t1
chr2.1	exon	34250655	34251072	34250655	ID=MS.gene071353.t1.exon2;Parent=MS.gene071353.t1
chr2.1	CDS	34250655	34251072	34250655	ID=cds.MS.gene071353.t1;Parent=MS.gene071353.t1
chr2.1	exon	34250439	34250612	34250439	ID=MS.gene071353.t1.exon3;Parent=MS.gene071353.t1
chr2.1	CDS	34250439	34250612	34250439	ID=cds.MS.gene071353.t1;Parent=MS.gene071353.t1
chr2.1	exon	34248752	34248991	34248752	ID=MS.gene071353.t1.exon4;Parent=MS.gene071353.t1
chr2.1	CDS	34248752	34248991	34248752	ID=cds.MS.gene071353.t1;Parent=MS.gene071353.t1
chr2.1	exon	34248371	34248658	34248371	ID=MS.gene071353.t1.exon5;Parent=MS.gene071353.t1
chr2.1	CDS	34248371	34248658	34248371	ID=cds.MS.gene071353.t1;Parent=MS.gene071353.t1
chr2.1	exon	34248026	34248280	34248026	ID=MS.gene071353.t1.exon6;Parent=MS.gene071353.t1
chr2.1	CDS	34248026	34248280	34248026	ID=cds.MS.gene071353.t1;Parent=MS.gene071353.t1

Gene Sequence

>MS.gene071353

ATGACATCGTTATTCTCTCAAATTGCTGTCAACAACGAACCAAGTGTTGATTTCTTTCACAAATTGAAGACGATGAGTATCCTAGAAGAGAAGTTAACAGTGAGGCCAAAAGATATTTTTTACTTATTCGGGTTAAAAGAGAATGGAATCCACCTGCTAAACATAATCGATTCTCACCAGTGGCATCACTATATCAATCTGTTAAACAATCCAAACTACTCGGAACTTGTAAAGTACTTTTAGGTTAGAGAAGAAGTGTTTGATAAAAGAGCAACATATGAAGAACTCATAAGAGCAAGGACAAGGGATCCCAGGAATGCAAATAAGTCAAGAAAGGAACTTGGGTTGAAGGAGTTTTTTGAGACAGAAATAAGGTCATCTGTCCCAGGAGCTCCGCTGGTCATCACAAAAGGCCTAATCTCAAAATTGCTTAAGGTATAGGGTTGACAATGAACCGAACCAATTCGAAAATAGTTCGAGACTCGATTCGGTAATTAATTCGTTGAACTTTGTTCATGAACCAAACGAGTCAAAACTTGAGTTAAAAATTAAGTTCGTCAGACAAATAAGTTGAACTTGAGCTAATTATATTTCAACGTGTTTGGTTCATGAGCCAGTTATATATATATAATCCATTGTTAAATCAATTACACTATTTTTAAAAGAAATGTTATTTATCGGTGTTTTTTGTTGCTACTTTATTAACAATTATAAAGTAAAAAAAGAATTAAATCCAATAGAGAAAGAGATGGCCACTTGAGTCAAAAGAAAATAAAATGATAATGTATGATGGTAATGCCCACTTGAAAATGTTGACAGCAAACTAAGGTCATTCAGGAACTAGCTACTATTAGGCTTGCAGTTCACTAGTCCCACATTGGAAGTTTACATCAGGGTATTGAGCGACTTATCTTACAAAACAACAACGCCTATTTCCTTCTTTAATACGGGAATCCGTTTATGGTGTTATTATTCAGTAGTTATTTTCTTAATTGGTTTTTAGACCAATTGAAAGGTTTATGAGTTACTTTTTGCTCATTTAAACCACAGTTTCTCCTTCTTTTTTCTCTTTCTTAATTCATTTGATTCGAGCTATCGAGCTGAACCAAGTTGTTTGCGAGCTTGACTTGAGTCAAGTTTGAGCTTATTTGCTCTAGTTATGTGAACTTTAAACGAATTGAACTTGAGTTGGAAAAAAATTCGTGTCGAACTCGAGTCGAGTTTTGAGCCGAGTAAATTCTTATCGAGTCGAGTCGAGCTCAGACAGATTCGACTCGACTCATTTCCAGCCCTATTAACGTAGATGAATCTGAATGTTATAAAGAAAACTCTCTGTATGAGTCAGAAGAAGTAATTAGAGACAAGCCTAAAAGGCTTGGATATATATATATATATATATATATATATATACACACACACACACACACACACACACACACACACACACACACATATATGAGATAGGATCCGTTGACACTAGGTGTCCACGAATTCGTCGACACCAATTCCCAACCGTCCAGATCTATTAATCATACGGTTCACAATGTTTACTTTTAAAAAGGAAACTTAGGTATTAAAATTTTCACGTGACATTTTTTCACTGTCTTTTCTCCGCGTTGTCTTGAGGTTTTGATAGAAAATATAGCAAGTCACCATTGCCGCCGAGGAGAAGGTTCTGCACCTTCGTCATCGCGTGAGTTTTCTGTAACACAATTCTTTTTCCCTCAAGATTTTATGGACAAAGCATCCTTTCCCCTAAGATCAATTGAGTACACCGTCAAAAACAAGTGGCACCGCCATATGATTGTCTTTCACGTGTCAATAGGAATTGGCACCATAATATTCTTTTATTTGTCTTTACATTTTCACTAATACCATGTTTCTCCCATAATTAAATACTTTCATTGTTCATTGAGGCAATTATATCCACGCCATATTATTATTATTATTATTTTTGCTAATGTCATGTTTCTCTCATGATCATGATCATGAATACTCATTATTCATGGCTTCTTTTATTTTTTTTTTATATCCTATAGGTACATGGATAATGAGTATGTGGAAAATTCTACTGTTGAGTGTTTAGAAGACCATGAGATAGTTGATGATGTGTCTAATGATTTAGAACCAAATTTAGAAAATTCCAAGTCACCTGAAGCTAATATTTGTCCTATTGTTGATATGGAATTTGACTCCATTGTGGATGTAAAAGAATTCTACACATCGTTTGCCAAGAAAGAAGGTTTTGGAGTTCGTGTTCGGTCTACTAAGCAAATTTTTTGCATGCTTGTATGCGCTAATGAAGGTACACATATAGTAAAGGGTGAAAATGAAGAAGGGAAGAGAAAGAGTTCAACCTCAAGAACTGATTGTAAAGCATCACTTACTGTTTCAAAAGCAGGGAAGAGAAGTAAATGGGTTATAAAAAGCATAAACAATGTTCACAATCATGGAATGGTTAGTCCTAAGAGTGTGGCCAATCTGCTTTCTCATAATTAGAAAATGACTGCAGCAACTAAGAGCCTCGTTGAGAAGTTTGATGAAGAAGGAGTACCTACAGGGAAAGTTGCTACAATGTTTCAGGGTGAAGATAATGCCTTGTCTAGTCGGGATTGCTGGAATCATCTTAGAAATCTCAGAAGAAGAAATCTTGATGTGGGAGATGCTCAAGCTGTCTTTAAATTTTGCAAGAAAAAACAAGTTGAGAATCCCAATTTTTTTTTATGCAATACAATGTGATGATGAAGATAGAATGATAAATTTCTTCTGGGTGGATGGAAGAGCAAGATTGTCGTATCAATTTTTTGGTGATGTTGTTACATTTGATACAACCTATAAAACCAACAAGTATGATATGCCATTTGCACCCTTCACCGGATTGAACCATCATTTTCAATCTATCTTGTTTGGTTGTGCTTTGTTGCAAGATGAGACTCAGAAGTCGTTTGACTGGTTGTTTACTTTTATTTTAGAGACAATGTTTATGTTGCTTAAATAATGATACAACAGCTGCCCATTCAGCCAACATTTTCGATACAGCAGCTCATTCAGCCAATATTGGTACTGAATTTTGGCGATAATACTAAATTTGATTTTGGCGATCAATGTCTTTATTATAATATGACAGCAGTTGTTATAATATGTACTGACAATGTTCCATCATATATATTCTCAATGGCAGAGCCAATAACATGACAACCAATTACCTCATAATATAACAGCAAGGATTGATATCCATGATTTTAGTCAGCAATATAGTACACTCTGCCAGCAACCACCGAGCACATACATCAACAACTTCAATTGGACTTAAATTTGAGCATCATTCATAAGAAAATAAGCAGTATTTGCTCCAGAGTTTATTTAATTTCAATCTCAATTGAGTAACATAGACATTATAAGAAAAAATAAACAGATGGTTCTTTAGAGCAAAACTTACTTAATACAAGAAACACCAAAGTTTAGAGTCTCTTTATATGGTAGACAATGTAATAAAAAAGCATATAGATTAGGAATCATCATACAACAAATCAAAACTTACTAAATTTACAAACAAGTTTCAAACCAGATAGTTTTCTAAAGAAGATCTACTTGGTACCATCTCCGATGGTTTTATTATCTACAACAATTTTAACTTTCCTATACTCAACATCTAAAAGTTGCATAGAACATCCTTCTGAAACCACTGCACAACGTTTATTGGCAAATATTGTCCACAAATAAAGCAGAGTAAATGCTGTCAATGCTCCACAACCAGTACCAAATATCATTGCAGCAAGAACTCTTAAAACACAATCATTCTTCTTTGCCCTTTCCTTTGGTTTAACAAGAATCAACATTAGTCAACTGTGTATTTACTAGTGTTTATTAGTTTTTAATATTGTAATTAATCATATTTAATATGTTACCAATTGTATACACAAGTATATGAATATAAATAAACATTCAGTATGGTCATGTAAGACACACAACCATTATACAATCTCAATTTGGTATCAGTAGTTTTAGGTTTCACGATCTGTTCTTATATGCCTCAGTAACCCTGCCATTACAAACGGCCACTGAGCAACCCTCATCTCTGCCACCGCGCATCTTCCCTCCGGTGTGCCACTACCAATAGGTTCGTCTCACTCCGACGACCTCTGCAGTCCAGCCAACACTCATGGTTGATACCGGAGGTGCCGATTCTTTTACTTTCACCAAAGTTTCGCTCATTCTGTGTGAGAAGCTAACCGGAACAACCAACTACAACATATGGGCTGGTGCCGTCAGACTCTGGTTTCACGGTCAAGGTCTTGAAGATCACTTGACCAAACAAGCCAAAGATATTGCCATTGTTCATCACACAAAATGGAAGCAAGTCGATGCATCCCTATGCACCGTTCTATGGTTTTCAATAGCACCCCATCTCCAAGCACAGTACCAAGCTTTAATTACTTGCTATGAAGTGTAGGAAAAGGCTAAGAAAGTCTTCTCTAATGATGTTCACCGTCTCTACAACGTTGTTCACATCCTCAATTCTTTGAAATTGGAGAATATGGATGTTCAAGCTTATCTTAGTAAGCTTGATTCTTTAAAGGCTAATTTTCAAACTTTAATGCCTTTCACTAGTGATGCAACAACTCATGCCGAACAACGCAGCAAGTTTTTCATGGTCATGGCTCTTGTTGGACTGCCACCAGAACTTGATTCTGTGCGCAACCAAATTTTATCTGGATCTACTGTTCCTGATTATGAGACAGTTAGTGAACAATTGTTGCGATTGGCCACACCTCATGCTTTTGGTCATGTCTCCACTCCATCTCCTAATGATTCATCTGCTCTTGCCTAGCACTACAATGGCCGTGGTGGACGGAATGGAGGACGCAGTAGTCGTAATAGTGTTCGTTGCAACTATTGCAACCGCTACGGCCATATTGAAGCTGATTGTCGTACAAAAGTAAGAGAACAACAACAACAGCCTAGAGTTGTTGTCGTTGCTCAACCTACTACCGTCGGAGATGTTACTATTCCGGCCGCTGATTACAATGAGTTCCTTCAGTTCAAAGCAGCCCATCAGCCATCATCTTCTACCGTTGTTGCGTAG

Protein sequence

>MS.gene071353.t1

MTSLFSQIAVNNEPSVDFFHKLKTMSILEEKLTVRPKDIFYLFGLKENGIHLLNIIDSHQWHHYINLLNNPNYSELVKYMDNEYVENSTVECLEDHEIVDDVSNDLEPNLENSKSPEANICPIVDMEFDSIVDVKEFYTSFAKKEGFGVRVRSTKQIFCMLVCANEGTHIVKGENEEGKRKSSTSRTDCKASLTVSKAGKRSKWVIKSINNVHNHGMKMTAATKSLVEKFDEEGVPTGKVATMFQGEDNALSSRDCWNHLRNLRRRNLDVGDAQAVRLTPTTSAVQPTLMVDTGGADSFTFTKVSLILCEKLTGTTNYNIWAGAVRLWFHGQGLEDHLTKQAKDIAIVHHTKWKQEKAKKVFSNDVHRLYNVVHILNSLKLENMDVQAYLSKLDSLKANFQTLMPFTSDATTHAEQRSKFFMVMALVGLPPELDSVRNQILSGSTVPDYETHYNGRGGRNGGRSSRNSVRCNYCNRYGHIEADCRTKVREQQQQPRVVVVAQPTTVGDVTIPAADYNEFLQFKAAHQPSSSTVVA