AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071611

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071611.t1 MTR_7g108290 97.902 143 3 0 1 143 1 143 3.04e-96 291
MS.gene071611.t1 MTR_1g088885 81.379 145 27 0 1 145 1 145 1.52e-83 257
MS.gene071611.t1 MTR_4g022330 56.410 117 51 0 29 145 27 143 4.85e-42 147
MS.gene071611.t1 MTR_5g016060 52.000 125 59 1 22 145 25 149 1.32e-41 146
MS.gene071611.t1 MTR_4g095430 54.032 124 54 2 25 145 1 124 4.05e-41 144
MS.gene071611.t1 MTR_1g105870 51.429 105 49 1 43 145 38 142 1.27e-34 121
MS.gene071611.t1 MTR_4g093850 42.276 123 70 1 26 147 33 155 1.97e-34 125
MS.gene071611.t1 MTR_5g075640 44.882 127 69 1 20 145 8 134 2.57e-34 125
MS.gene071611.t1 MTR_4g093850 42.276 123 70 1 26 147 33 155 4.06e-34 125
MS.gene071611.t1 MTR_2g009340 44.737 114 63 0 34 147 42 155 7.27e-33 122
MS.gene071611.t1 MTR_7g073980 48.673 113 57 1 34 145 31 143 2.03e-32 120
MS.gene071611.t1 MTR_3g062540 39.370 127 76 1 20 145 7 133 4.66e-29 111
MS.gene071611.t1 MTR_2g048390 38.710 124 74 2 26 147 15 138 1.66e-28 108
MS.gene071611.t1 MTR_2g084595 40.517 116 67 1 34 147 21 136 1.82e-26 103
MS.gene071611.t1 MTR_2g084595 40.517 116 67 1 34 147 21 136 3.70e-26 103
MS.gene071611.t1 MTR_8g078900 39.062 128 58 2 38 145 22 149 4.01e-26 102
MS.gene071611.t1 MTR_8g078900 39.062 128 58 2 38 145 22 149 4.75e-26 102
MS.gene071611.t1 MTR_5g032780 44.186 129 66 2 18 144 12 136 5.51e-26 102
MS.gene071611.t1 MTR_2g018750 41.129 124 70 2 20 140 9 132 1.60e-25 101
MS.gene071611.t1 MTR_5g075640 47.778 90 47 0 56 145 2 91 6.30e-25 99.8
MS.gene071611.t1 MTR_4g134210 38.017 121 75 0 27 147 17 137 1.24e-24 99.0
MS.gene071611.t1 MTR_2g027410 37.288 118 74 0 27 144 17 134 8.15e-24 96.7
MS.gene071611.t1 MTR_1g064360 42.991 107 59 1 36 140 26 132 8.45e-24 96.3
MS.gene071611.t1 MTR_8g078900 39.831 118 51 2 48 145 2 119 8.89e-24 96.3
MS.gene071611.t1 MTR_1g094850 38.938 113 68 1 38 149 28 140 1.47e-23 95.9
MS.gene071611.t1 MTR_1g082690 37.288 118 70 1 37 150 59 176 1.60e-23 95.5
MS.gene071611.t1 MTR_8g090220 39.823 113 67 1 36 147 52 164 2.19e-23 95.1
MS.gene071611.t1 MTR_1g014070 35.088 114 74 0 34 147 25 138 2.66e-23 95.1
MS.gene071611.t1 MTR_8g090220 40.541 111 65 1 36 145 52 162 7.03e-23 94.0
MS.gene071611.t1 MTR_8g069330 42.056 107 61 1 39 144 29 135 2.12e-22 92.4
MS.gene071611.t1 MTR_1g106430 32.456 114 77 0 34 147 26 139 3.26e-22 92.0
MS.gene071611.t1 MTR_3g062540 42.222 90 52 0 56 145 2 91 2.31e-21 89.4
MS.gene071611.t1 MTR_5g015790 35.965 114 72 1 34 147 25 137 2.69e-21 89.4
MS.gene071611.t1 MTR_8g078900 50.000 68 34 0 78 145 42 109 6.05e-19 82.8
MS.gene071611.t1 MTR_8g078900 50.000 68 34 0 78 145 42 109 6.65e-19 82.0
MS.gene071611.t1 MTR_4g074190 32.407 108 68 3 37 139 4 111 6.88e-13 65.1
MS.gene071611.t1 MTR_4g074190 32.407 108 68 3 37 139 4 111 5.54e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071611.t1 AT1G03010 64.789 142 47 1 1 142 1 139 1.96e-62 202
MS.gene071611.t1 AT2G47860 61.379 145 52 2 1 144 1 142 9.53e-60 191
MS.gene071611.t1 AT2G47860 61.379 145 52 2 1 144 1 142 1.98e-58 191
MS.gene071611.t1 AT2G47860 52.976 168 52 3 1 144 1 165 1.42e-54 178
MS.gene071611.t1 AT2G47860 52.976 168 52 3 1 144 1 165 2.07e-53 178
MS.gene071611.t1 AT1G03010 64.865 111 36 1 32 142 5 112 4.82e-45 155
MS.gene071611.t1 AT1G03010 64.865 111 36 1 32 142 31 138 7.57e-45 155
MS.gene071611.t1 AT5G48800 52.846 123 58 0 23 145 28 150 6.70e-43 149
MS.gene071611.t1 AT5G67385 51.111 135 64 2 13 145 1 135 2.49e-40 142
MS.gene071611.t1 AT2G30520 44.800 125 68 1 22 145 15 139 4.21e-35 128
MS.gene071611.t1 AT3G08570 46.491 114 59 1 34 145 32 145 7.36e-32 119
MS.gene071611.t1 AT5G64330 43.860 114 64 0 34 147 50 163 2.59e-30 115
MS.gene071611.t1 AT5G64330 43.860 114 64 0 34 147 50 163 2.77e-30 115
MS.gene071611.t1 AT3G08660 45.536 112 60 1 34 145 32 142 9.24e-30 112
MS.gene071611.t1 AT3G08660 45.536 112 60 1 34 145 32 142 2.25e-29 112
MS.gene071611.t1 AT4G31820 40.769 130 67 1 30 149 21 150 1.89e-28 109
MS.gene071611.t1 AT1G67900 42.308 130 68 2 18 147 12 134 4.16e-27 105
MS.gene071611.t1 AT1G67900 42.308 130 68 2 18 147 12 134 4.16e-27 105
MS.gene071611.t1 AT1G67900 42.308 130 68 2 18 147 12 134 4.16e-27 105
MS.gene071611.t1 AT1G67900 42.308 130 68 2 18 147 12 134 4.16e-27 105
MS.gene071611.t1 AT1G67900 42.308 130 68 2 18 147 12 134 4.16e-27 105
MS.gene071611.t1 AT1G67900 42.308 130 68 2 18 147 12 134 4.16e-27 105
MS.gene071611.t1 AT5G67385 54.444 90 40 1 57 145 1 90 1.46e-26 104
MS.gene071611.t1 AT5G67385 54.444 90 40 1 57 145 1 90 1.46e-26 104
MS.gene071611.t1 AT5G67385 54.444 90 40 1 57 145 1 90 1.46e-26 104
MS.gene071611.t1 AT5G67385 54.444 90 40 1 57 145 1 90 1.46e-26 104
MS.gene071611.t1 AT5G03250 45.714 105 55 1 38 140 28 132 1.50e-25 101
MS.gene071611.t1 AT1G30440 36.800 125 76 2 26 147 15 139 1.54e-25 101
MS.gene071611.t1 AT2G30520 46.667 90 48 0 56 145 2 91 3.53e-25 100
MS.gene071611.t1 AT2G30520 46.667 90 48 0 56 145 2 91 3.53e-25 100
MS.gene071611.t1 AT3G49970 50.505 99 46 2 48 145 6 102 1.95e-24 98.2
MS.gene071611.t1 AT3G49970 50.505 99 46 2 48 145 6 102 1.95e-24 98.2
MS.gene071611.t1 AT3G44820 36.508 126 76 2 26 147 12 137 6.31e-24 97.1
MS.gene071611.t1 AT5G64330 44.211 95 53 0 53 147 10 104 2.19e-23 95.5
MS.gene071611.t1 AT5G67440 36.752 117 71 1 34 147 25 141 6.02e-23 94.0
MS.gene071611.t1 AT5G67440 36.752 117 71 1 34 147 25 141 6.02e-23 94.0
MS.gene071611.t1 AT5G47800 35.714 112 72 0 33 144 23 134 8.04e-23 93.6
MS.gene071611.t1 AT5G47800 35.714 112 72 0 33 144 23 134 8.04e-23 93.6
MS.gene071611.t1 AT5G47800 35.714 112 72 0 33 144 23 134 8.04e-23 93.6
MS.gene071611.t1 AT5G47800 35.714 112 72 0 33 144 136 247 1.01e-22 93.6
MS.gene071611.t1 AT3G50840 41.121 107 62 1 38 143 18 124 3.14e-22 92.0
MS.gene071611.t1 AT3G26490 37.762 143 74 5 19 150 8 146 1.18e-21 90.1
MS.gene071611.t1 AT3G26490 37.762 143 74 5 19 150 8 146 1.45e-21 90.1
MS.gene071611.t1 AT3G26490 37.762 143 74 5 19 150 8 146 1.45e-21 90.1
MS.gene071611.t1 AT3G26490 37.762 143 74 5 19 150 8 146 1.45e-21 90.1
MS.gene071611.t1 AT2G23050 33.077 130 78 2 23 147 18 143 9.10e-21 87.8
MS.gene071611.t1 AT5G13600 39.048 105 63 1 39 143 29 132 1.45e-20 87.4
MS.gene071611.t1 AT5G10250 38.261 115 70 1 34 147 48 162 2.48e-20 86.7
MS.gene071611.t1 AT5G10250 38.261 115 70 1 34 147 48 162 2.72e-20 86.7
MS.gene071611.t1 AT2G14820 31.579 114 78 0 34 147 25 138 4.90e-20 85.9
MS.gene071611.t1 AT2G14820 31.579 114 78 0 34 147 25 138 4.90e-20 85.9
MS.gene071611.t1 AT4G37590 34.400 125 71 1 34 147 25 149 8.51e-20 85.1
MS.gene071611.t1 AT5G66560 29.870 154 64 2 38 147 21 174 8.83e-19 82.0
MS.gene071611.t1 AT5G66560 29.870 154 64 2 38 147 21 174 1.12e-18 81.6
MS.gene071611.t1 AT5G67440 38.000 100 59 1 51 147 5 104 1.14e-18 82.0
MS.gene071611.t1 AT3G08660 43.373 83 46 1 63 145 1 82 1.39e-17 78.6
MS.gene071611.t1 AT5G66560 29.167 144 58 2 48 147 2 145 2.38e-16 75.1
MS.gene071611.t1 AT4G31820 36.082 97 52 1 63 149 1 97 1.60e-14 70.1
MS.gene071611.t1 AT5G66560 38.889 72 44 0 76 147 64 135 2.24e-14 69.7
MS.gene071611.t1 AT3G50840 37.931 87 53 1 57 142 1 87 3.99e-14 68.9
MS.gene071611.t1 AT3G50840 37.931 87 53 1 57 142 1 87 3.99e-14 68.9
MS.gene071611.t1 AT5G48130 35.238 105 62 2 42 145 45 144 2.69e-13 66.6
MS.gene071611.t1 AT3G19850 31.532 111 69 2 36 139 3 113 5.48e-13 65.5
MS.gene071611.t1 AT1G50280 32.174 115 69 3 32 140 3 114 5.59e-12 62.8

Find 33 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAGTTTCCTCTTGTTTCT+AGG 0.091654 7.1:+5799630 MS.gene071611:intron
GAATTGAAGCCTAGTGTTTC+AGG 0.216646 7.1:+5798032 MS.gene071611:CDS
TTTCTAGGAGTGGAAGATTT+AGG 0.247375 7.1:+5799645 MS.gene071611:CDS
AGAATTCTCAGAAAAGAATT+TGG 0.264671 7.1:+5799844 MS.gene071611:CDS
ATTTACCTTGTGAAGTGAAT+AGG 0.350440 7.1:-5799109 None:intergenic
TGTATAATGTTCGATGTGTT+TGG 0.398184 7.1:-5799904 None:intergenic
TCACTGGAGACATCAGATAT+TGG 0.444897 7.1:-5799060 None:intergenic
TTTCCTCTTGTTTCTAGGAG+TGG 0.473410 7.1:+5799635 MS.gene071611:CDS
AGCCTAGTGTTTCAGGAAGA+AGG 0.476944 7.1:+5798039 MS.gene071611:CDS
GTAAGTCTTCCGACCGTGCC+AGG 0.485055 7.1:+5799707 MS.gene071611:CDS
TACTTGGATGGTAAGATCAC+TGG 0.486316 7.1:-5799076 None:intergenic
AAGAGCTGAATCATATCTAA+AGG 0.501938 7.1:+5799871 MS.gene071611:CDS
AATAGGTTGATGCTCCTACT+TGG 0.504109 7.1:-5799092 None:intergenic
AAACACATCGAACATTATAC+AGG 0.516060 7.1:+5799906 MS.gene071611:CDS
AAAATGGGAGTTGTAACTCT+TGG 0.524005 7.1:+5798008 None:intergenic
ATAGCTGCAAAATTCTGCTA+TGG 0.525366 7.1:+5799749 MS.gene071611:CDS
GCATGTCTTATGCTTGAACT+TGG 0.528359 7.1:-5798071 None:intergenic
TGAATCATATCTAAAGGAAA+CGG 0.538877 7.1:+5799877 MS.gene071611:CDS
GCATAAGACATGCCACTGAA+TGG 0.541068 7.1:+5798081 MS.gene071611:CDS
TGCATCTACACCACCTGGCA+CGG 0.550474 7.1:-5799720 None:intergenic
GGTTGATGCTCCTACTTGGA+TGG 0.586634 7.1:-5799088 None:intergenic
TCTACACCACCTGGCACGGT+CGG 0.595705 7.1:-5799716 None:intergenic
CTTCCACTCCTAGAAACAAG+AGG 0.596628 7.1:-5799638 None:intergenic
AGTGATCTTACCATCCAAGT+AGG 0.606850 7.1:+5799078 MS.gene071611:CDS
GTCCTTCTTCCTGAAACACT+AGG 0.612878 7.1:-5798041 None:intergenic
TCAAATGCATCTACACCACC+TGG 0.627222 7.1:-5799725 None:intergenic
ATCAACCTATTCACTTCACA+AGG 0.635818 7.1:+5799104 MS.gene071611:CDS
TAGCATAGCAATATTCGAGA+GGG 0.638972 7.1:-5799789 None:intergenic
AAAATTATAATACCATTCAG+TGG 0.645788 7.1:-5798093 None:intergenic
ATAGCATAGCAATATTCGAG+AGG 0.677800 7.1:-5799790 None:intergenic
AGTCTTCCGACCGTGCCAGG+TGG 0.688935 7.1:+5799710 MS.gene071611:CDS
ATTCTGCTATGGAATCAATG+TGG 0.703925 7.1:+5799760 MS.gene071611:CDS
ACGGTCGGAAGACTTACGCG+CGG 0.751124 7.1:-5799701 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGTATGATAATAATTGA+TGG - chr7.1:5798631-5798650 None:intergenic 15.0%
!! ATAATTATAACATATCAGAA+TGG - chr7.1:5799147-5799166 None:intergenic 15.0%
!! TTATAATTATACATTCAACA+TGG + chr7.1:5799157-5799176 MS.gene071611:intron 15.0%
!!! ACTTTTTTCTTTTTTTTTGA+AGG + chr7.1:5798122-5798141 MS.gene071611:intron 15.0%
!!! ATTAAAACCTTTTATACTAA+CGG - chr7.1:5799306-5799325 None:intergenic 15.0%
!!! CTGTATCAAAATAATATTTT+AGG - chr7.1:5798820-5798839 None:intergenic 15.0%
!!! TCAAAATAATATTTTAGGAA+TGG - chr7.1:5798815-5798834 None:intergenic 15.0%
!!! TTTTTATGTAATGCAATAAA+TGG - chr7.1:5798901-5798920 None:intergenic 15.0%
!! AAAATTATAATACCATTCAG+TGG - chr7.1:5798096-5798115 None:intergenic 20.0%
!! TGATAACATACTATATAAGA+TGG - chr7.1:5799472-5799491 None:intergenic 20.0%
!!! TCTCTGAAAATTTCAATTTT+TGG + chr7.1:5798953-5798972 MS.gene071611:intron 20.0%
! AACCCATTAATGCAAATAAT+TGG - chr7.1:5798775-5798794 None:intergenic 25.0%
! AATTTCATGAAATCTTGAAG+TGG - chr7.1:5798245-5798264 None:intergenic 25.0%
! ACTCCAATTATTTGCATTAA+TGG + chr7.1:5798769-5798788 MS.gene071611:intron 25.0%
! AGAATTCTCAGAAAAGAATT+TGG + chr7.1:5799844-5799863 MS.gene071611:CDS 25.0%
! ATTAGTTCATCAACCATAAT+AGG - chr7.1:5798374-5798393 None:intergenic 25.0%
! CTCCAATTATTTGCATTAAT+GGG + chr7.1:5798770-5798789 MS.gene071611:intron 25.0%
! TGAATCATATCTAAAGGAAA+CGG + chr7.1:5799877-5799896 MS.gene071611:CDS 25.0%
! TTGCATTTCCAAATTCATTT+AGG - chr7.1:5798668-5798687 None:intergenic 25.0%
!! AAACTTAAGTAACCATTTTG+AGG + chr7.1:5798846-5798865 MS.gene071611:intron 25.0%
!!! CATACTATTGTTTTAGCTTT+TGG + chr7.1:5798642-5798661 MS.gene071611:intron 25.0%
AAGAGCTGAATCATATCTAA+AGG + chr7.1:5799871-5799890 MS.gene071611:CDS 30.0%
ATAGCAAAACTACATTTGAC+AGG - chr7.1:5799508-5799527 None:intergenic 30.0%
ATGGTGCAATAATAAGACAT+TGG - chr7.1:5798882-5798901 None:intergenic 30.0%
ATTTACCTTGTGAAGTGAAT+AGG - chr7.1:5799112-5799131 None:intergenic 30.0%
CCAAAAAAATTGTCCATTGT+CGG - chr7.1:5798697-5798716 None:intergenic 30.0%
CTACGTGTATATAATGATTC+AGG + chr7.1:5799018-5799037 MS.gene071611:intron 30.0%
GACATGAAAATTTCAAAGCA+TGG - chr7.1:5798999-5799018 None:intergenic 30.0%
TCATGTCATTGTTTGGTAAA+AGG - chr7.1:5798545-5798564 None:intergenic 30.0%
TGATACACCGTTAGTATAAA+AGG + chr7.1:5799296-5799315 MS.gene071611:intron 30.0%
TGTATAATGTTCGATGTGTT+TGG - chr7.1:5799907-5799926 None:intergenic 30.0%
TTTCATATAGCTAACAGATG+AGG - chr7.1:5798591-5798610 None:intergenic 30.0%
! CATCTAATTTTCCAATCTCA+AGG - chr7.1:5798500-5798519 None:intergenic 30.0%
! CATGTTTCTGAATAACTTCT+AGG - chr7.1:5798190-5798209 None:intergenic 30.0%
! GAATGGCTATTTCAATATAG+TGG - chr7.1:5798798-5798817 None:intergenic 30.0%
ACGAAATACCAACACAAACA+CGG + chr7.1:5798399-5798418 MS.gene071611:intron 35.0%
ATAGCATAGCAATATTCGAG+AGG - chr7.1:5799793-5799812 None:intergenic 35.0%
ATAGCTGCAAAATTCTGCTA+TGG + chr7.1:5799749-5799768 MS.gene071611:CDS 35.0%
ATCAACCTATTCACTTCACA+AGG + chr7.1:5799104-5799123 MS.gene071611:CDS 35.0%
ATTCTGCTATGGAATCAATG+TGG + chr7.1:5799760-5799779 MS.gene071611:CDS 35.0%
CAACCATAATAGGATCTGAA+GGG - chr7.1:5798364-5798383 None:intergenic 35.0%
CTAGAAACAAGAGGAAACTA+GGG - chr7.1:5799632-5799651 None:intergenic 35.0%
GAAAATTTCAAAGCATGGCA+AGG - chr7.1:5798994-5799013 None:intergenic 35.0%
GGATAAGAATAGCCTCAAAA+TGG - chr7.1:5798861-5798880 None:intergenic 35.0%
TAGCATAGCAATATTCGAGA+GGG - chr7.1:5799792-5799811 None:intergenic 35.0%
TCAACCATAATAGGATCTGA+AGG - chr7.1:5798365-5798384 None:intergenic 35.0%
TTGGTAAAAGGACTACATCA+AGG - chr7.1:5798533-5798552 None:intergenic 35.0%
! ACATGATGCTCGATTTTGAA+TGG + chr7.1:5798559-5798578 MS.gene071611:intron 35.0%
! ACATTCAACATGGTTTTCTC+TGG + chr7.1:5799167-5799186 MS.gene071611:intron 35.0%
! GCTTTTGGCCTAAATGAATT+TGG + chr7.1:5798657-5798676 MS.gene071611:intron 35.0%
! GTCTTATTGAGTTCGAGTTT+GGG + chr7.1:5798292-5798311 MS.gene071611:intron 35.0%
! TCTGGTTTACATTCCAAGTT+AGG + chr7.1:5799185-5799204 MS.gene071611:intron 35.0%
! TCTTATTGAGTTCGAGTTTG+GGG + chr7.1:5798293-5798312 MS.gene071611:intron 35.0%
! TGTTTGTGTTGGTATTTCGT+AGG - chr7.1:5798399-5798418 None:intergenic 35.0%
! TTTCTAGGAGTGGAAGATTT+AGG + chr7.1:5799645-5799664 MS.gene071611:CDS 35.0%
!! AGTCTTATTGAGTTCGAGTT+TGG + chr7.1:5798291-5798310 MS.gene071611:intron 35.0%
!!! CCGACAATGGACAATTTTTT+TGG + chr7.1:5798694-5798713 MS.gene071611:intron 35.0%
AGTGATCTTACCATCCAAGT+AGG + chr7.1:5799078-5799097 MS.gene071611:CDS 40.0%
ATCAATGTCCGTGTTTGTGT+TGG - chr7.1:5798410-5798429 None:intergenic 40.0%
CCTAGAAACAAGAGGAAACT+AGG - chr7.1:5799633-5799652 None:intergenic 40.0%
CTATTCATTGCCACCTAACT+TGG - chr7.1:5799201-5799220 None:intergenic 40.0%
GAATTGAAGCCTAGTGTTTC+AGG + chr7.1:5798032-5798051 MS.gene071611:CDS 40.0%
GCATGTCTTATGCTTGAACT+TGG - chr7.1:5798074-5798093 None:intergenic 40.0%
GGTTTACATTCCAAGTTAGG+TGG + chr7.1:5799188-5799207 MS.gene071611:intron 40.0%
GTTAGGTGGCAATGAATAGT+TGG + chr7.1:5799202-5799221 MS.gene071611:intron 40.0%
GTTATTGGACACCTTGAGAT+TGG + chr7.1:5798486-5798505 MS.gene071611:intron 40.0%
TACTTGGATGGTAAGATCAC+TGG - chr7.1:5799079-5799098 None:intergenic 40.0%
TCACTGGAGACATCAGATAT+TGG - chr7.1:5799063-5799082 None:intergenic 40.0%
TCGAGCATCATGTCATTGTT+TGG - chr7.1:5798552-5798571 None:intergenic 40.0%
! CCAAGAGCTCAAAAGCATAA+TGG - chr7.1:5799542-5799561 None:intergenic 40.0%
! CCATTATGCTTTTGAGCTCT+TGG + chr7.1:5799539-5799558 MS.gene071611:intron 40.0%
! CCTAGTTTCCTCTTGTTTCT+AGG + chr7.1:5799630-5799649 MS.gene071611:intron 40.0%
! CTTATTGAGTTCGAGTTTGG+GGG + chr7.1:5798294-5798313 MS.gene071611:intron 40.0%
! TGTTAGTGTCGTGTCGTTAT+TGG + chr7.1:5798471-5798490 MS.gene071611:intron 40.0%
! TTATGCTTTTGAGCTCTTGG+TGG + chr7.1:5799542-5799561 MS.gene071611:intron 40.0%
!! AATAGGTTGATGCTCCTACT+TGG - chr7.1:5799095-5799114 None:intergenic 40.0%
!! TTTCCTCTTGTTTCTAGGAG+TGG + chr7.1:5799635-5799654 MS.gene071611:CDS 40.0%
!!! CAGGAAGAGTCTTTTTTTGC+AGG + chr7.1:5799037-5799056 MS.gene071611:intron 40.0%
AATGCAAAGCTCACCGACAA+TGG + chr7.1:5798681-5798700 MS.gene071611:intron 45.0%
AGCCTAGTGTTTCAGGAAGA+AGG + chr7.1:5798039-5798058 MS.gene071611:CDS 45.0%
ATTGGAGTTTCACGCTAGCA+TGG - chr7.1:5798757-5798776 None:intergenic 45.0%
CCATAATAGGATCTGAAGGG+AGG - chr7.1:5798361-5798380 None:intergenic 45.0%
CCTCCCTTCAGATCCTATTA+TGG + chr7.1:5798358-5798377 MS.gene071611:intron 45.0%
CTTCCACTCCTAGAAACAAG+AGG - chr7.1:5799641-5799660 None:intergenic 45.0%
GCATAAGACATGCCACTGAA+TGG + chr7.1:5798081-5798100 MS.gene071611:CDS 45.0%
GTCCTTCTTCCTGAAACACT+AGG - chr7.1:5798044-5798063 None:intergenic 45.0%
TCAAATGCATCTACACCACC+TGG - chr7.1:5799728-5799747 None:intergenic 45.0%
! GGTTGATGCTCCTACTTGGA+TGG - chr7.1:5799091-5799110 None:intergenic 50.0%
TGCATCTACACCACCTGGCA+CGG - chr7.1:5799723-5799742 None:intergenic 55.0%
ACGGTCGGAAGACTTACGCG+CGG - chr7.1:5799704-5799723 None:intergenic 60.0%
GTAAGTCTTCCGACCGTGCC+AGG + chr7.1:5799707-5799726 MS.gene071611:CDS 60.0%
TCTACACCACCTGGCACGGT+CGG - chr7.1:5799719-5799738 None:intergenic 60.0%
AGTCTTCCGACCGTGCCAGG+TGG + chr7.1:5799710-5799729 MS.gene071611:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 5798011 5799927 5798011 ID=MS.gene071611
chr7.1 mRNA 5798011 5799927 5798011 ID=MS.gene071611.t1;Parent=MS.gene071611
chr7.1 exon 5798011 5798102 5798011 ID=MS.gene071611.t1.exon1;Parent=MS.gene071611.t1
chr7.1 CDS 5798011 5798102 5798011 ID=cds.MS.gene071611.t1;Parent=MS.gene071611.t1
chr7.1 exon 5799059 5799125 5799059 ID=MS.gene071611.t1.exon2;Parent=MS.gene071611.t1
chr7.1 CDS 5799059 5799125 5799059 ID=cds.MS.gene071611.t1;Parent=MS.gene071611.t1
chr7.1 exon 5799635 5799927 5799635 ID=MS.gene071611.t1.exon3;Parent=MS.gene071611.t1
chr7.1 CDS 5799635 5799927 5799635 ID=cds.MS.gene071611.t1;Parent=MS.gene071611.t1
Gene Sequence

>MS.gene071611

ATGGGAGTTGTAACTCTTGGTGAATTGAAGCCTAGTGTTTCAGGAAGAAGGACTTTTCGTCCAAGTTCAAGCATAAGACATGCCACTGAATGGTATTATAATTTTCTTACTACTTTTTTCTTTTTTTTTGAAGGATTCTTACTACTTCTAGAAGTTTTTATTTATTTACACATATTCCTAGAAGTTATTCAGAAACATGCAAGTGTCTAAGTCTGTCTCATATCTATAATACCACTTCAAGATTTCATGAAATTCAACAATACTTGAATGAGCTGACACAAGTCTTATTGAGTTCGAGTTTGGGGGTCTTACACAACATCAACGTTAAAGCTCTTGAGATAGCTATACCTCCCTTCAGATCCTATTATGGTTGATGAACTAATTTCCTACGAAATACCAACACAAACACGGACATTGATAACAATTTAAGAAAATGAACGTAGTCAAATATAACTAATCGTGTTAGTGTCGTGTCGTTATTGGACACCTTGAGATTGGAAAATTAGATGTAAAATTTGACCTTGATGTAGTCCTTTTACCAAACAATGACATGATGCTCGATTTTGAATGGTTTAGACCTCATCTGTTAGCTATATGAAACAATTGATGTTTTTCATCCATCAATTATTATCATACTATTGTTTTAGCTTTTGGCCTAAATGAATTTGGAAATGCAAAGCTCACCGACAATGGACAATTTTTTTGGCTTCACATAGAACATGACAACTGTGAAATCAACTTGACCATGCTAGCGTGAAACTCCAATTATTTGCATTAATGGGTTCCACTATATTGAAATAGCCATTCCTAAAATATTATTTTGATACAGAAATCAAAACTTAAGTAACCATTTTGAGGCTATTCTTATCCAATGTCTTATTATTGCACCATTTATTGCATTACATAAAAAATATATGCTAATAGAGTAGTCTCTTTCAAATGTCTCTGAAAATTTCAATTTTTGGTAATAATAATGTACGCCTTGCCATGCTTTGAAATTTTCATGTCTACGTGTATATAATGATTCAGGAAGAGTCTTTTTTTGCAGGCCAATATCTGATGTCTCCAGTGATCTTACCATCCAAGTAGGAGCATCAACCTATTCACTTCACAAGGTAAATTAAAACAATCTTCCATTCTGATATGTTATAATTATACATTCAACATGGTTTTCTCTGGTTTACATTCCAAGTTAGGTGGCAATGAATAGTTGGCAATTTTCTAAGTAGATCATTATAATTTTGCTATGAACATACATAGTTAATTAATTTTATGAGTTTAATTTTGATACACCGTTAGTATAAAAGGTTTTAATCGTCAACAAATCACAAACAATCATATCTGTGACTTAAGAAATAGTTGTGATTAATAAAATCAAACATTTTTAATGATCAGACGATAATGATTGATTGACAACGTAAAAAAAATCTTTATAATGATACTGTATATGAATTCAATCCATCTTATATAGTATGTTATCAGCAGATAATTTTTCCTGTCAAATGTAGTTTTGCTATATGTGTAGTTTCCATTATGCTTTTGAGCTCTTGGTGGCTTCTTTTCATGCATCATTATGCATATTTTCTCACTACTTTGTACTTAAACTCTTGTTATTTTTCCCTAGTTTCCTCTTGTTTCTAGGAGTGGAAGATTTAGGAAGCTGCTATCTGAATCAAAAGATTCTAAAGTTCCGCGCGTAAGTCTTCCGACCGTGCCAGGTGGTGTAGATGCATTTGAAATAGCTGCAAAATTCTGCTATGGAATCAATGTGGAATTCACCCTCTCGAATATTGCTATGCTATATTGTATATCTCATTTTCTTGAAATGACAGAAGAATTCTCAGAAAAGAATTTGGTGACAAGAGCTGAATCATATCTAAAGGAAACGGTACTCCAAACACATCGAACATTATACAG
Protein sequence

>MS.gene071611.t1

MGVVTLGELKPSVSGRRTFRPSSSIRHATEWPISDVSSDLTIQVGASTYSLHKFPLVSRSGRFRKLLSESKDSKVPRVSLPTVPGGVDAFEIAAKFCYGINVEFTLSNIAMLYCISHFLEMTEEFSEKNLVTRAESYLKETVLQTHRTLY