AlfalfaGEDB | MS.gene071611

M. sativa cultivar XinJiangDaYe / MS.gene071611

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071611.t1	AES82096.2	97.9	143	3	0	1	143	1	143	1.40E-71	278.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071611.t1	Q9SA69	64.8	142	47	1	1	142	1	139	4.2e-48	192.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071611.t1	G7KRS5	97.9	143	3	0	1	143	1	143	1.0e-71	278.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene071611.t1	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071611.t1	MTR_7g108290	97.902	143	3	0	1	143	1	143	3.04e-96	291
MS.gene071611.t1	MTR_1g088885	81.379	145	27	0	1	145	1	145	1.52e-83	257
MS.gene071611.t1	MTR_4g022330	56.410	117	51	0	29	145	27	143	4.85e-42	147
MS.gene071611.t1	MTR_5g016060	52.000	125	59	1	22	145	25	149	1.32e-41	146
MS.gene071611.t1	MTR_4g095430	54.032	124	54	2	25	145	1	124	4.05e-41	144
MS.gene071611.t1	MTR_1g105870	51.429	105	49	1	43	145	38	142	1.27e-34	121
MS.gene071611.t1	MTR_4g093850	42.276	123	70	1	26	147	33	155	1.97e-34	125
MS.gene071611.t1	MTR_5g075640	44.882	127	69	1	20	145	8	134	2.57e-34	125
MS.gene071611.t1	MTR_4g093850	42.276	123	70	1	26	147	33	155	4.06e-34	125
MS.gene071611.t1	MTR_2g009340	44.737	114	63	0	34	147	42	155	7.27e-33	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071611.t1	AT1G03010	64.789	142	47	1	1	142	1	139	1.96e-62	202
MS.gene071611.t1	AT2G47860	61.379	145	52	2	1	144	1	142	9.53e-60	191
MS.gene071611.t1	AT2G47860	61.379	145	52	2	1	144	1	142	1.98e-58	191
MS.gene071611.t1	AT2G47860	52.976	168	52	3	1	144	1	165	1.42e-54	178
MS.gene071611.t1	AT2G47860	52.976	168	52	3	1	144	1	165	2.07e-53	178
MS.gene071611.t1	AT1G03010	64.865	111	36	1	32	142	5	112	4.82e-45	155
MS.gene071611.t1	AT1G03010	64.865	111	36	1	32	142	31	138	7.57e-45	155
MS.gene071611.t1	AT5G48800	52.846	123	58	0	23	145	28	150	6.70e-43	149
MS.gene071611.t1	AT5G67385	51.111	135	64	2	13	145	1	135	2.49e-40	142
MS.gene071611.t1	AT2G30520	44.800	125	68	1	22	145	15	139	4.21e-35	128

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Find 33 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGAGTTGTAACTCT+TGG	0.524005	7.1:+5798008	None:intergenic
AAAATTATAATACCATTCAG+TGG	0.645788	7.1:-5798093	None:intergenic
AAACACATCGAACATTATAC+AGG	0.516060	7.1:+5799906	MS.gene071611:CDS
AAGAGCTGAATCATATCTAA+AGG	0.501938	7.1:+5799871	MS.gene071611:CDS
AATAGGTTGATGCTCCTACT+TGG	0.504109	7.1:-5799092	None:intergenic
ACGGTCGGAAGACTTACGCG+CGG	0.751124	7.1:-5799701	None:intergenic
AGAATTCTCAGAAAAGAATT+TGG	0.264671	7.1:+5799844	MS.gene071611:CDS
AGCCTAGTGTTTCAGGAAGA+AGG	0.476944	7.1:+5798039	MS.gene071611:CDS
AGTCTTCCGACCGTGCCAGG+TGG	0.688935	7.1:+5799710	MS.gene071611:CDS
AGTGATCTTACCATCCAAGT+AGG	0.606850	7.1:+5799078	MS.gene071611:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGCTGAATCATATCTAA+AGG	+	chr7.1:5799871-5799890	MS.gene071611:CDS	30.0%
ATAGCAAAACTACATTTGAC+AGG	-	chr7.1:5799508-5799527	None:intergenic	30.0%
ATGGTGCAATAATAAGACAT+TGG	-	chr7.1:5798882-5798901	None:intergenic	30.0%
ATTTACCTTGTGAAGTGAAT+AGG	-	chr7.1:5799112-5799131	None:intergenic	30.0%
CCAAAAAAATTGTCCATTGT+CGG	-	chr7.1:5798697-5798716	None:intergenic	30.0%
CTACGTGTATATAATGATTC+AGG	+	chr7.1:5799018-5799037	MS.gene071611:intron	30.0%
GACATGAAAATTTCAAAGCA+TGG	-	chr7.1:5798999-5799018	None:intergenic	30.0%
TCATGTCATTGTTTGGTAAA+AGG	-	chr7.1:5798545-5798564	None:intergenic	30.0%
TGATACACCGTTAGTATAAA+AGG	+	chr7.1:5799296-5799315	MS.gene071611:intron	30.0%
TGTATAATGTTCGATGTGTT+TGG	-	chr7.1:5799907-5799926	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	5798011	5799927	5798011	ID=MS.gene071611
chr7.1	mRNA	5798011	5799927	5798011	ID=MS.gene071611.t1;Parent=MS.gene071611
chr7.1	exon	5798011	5798102	5798011	ID=MS.gene071611.t1.exon1;Parent=MS.gene071611.t1
chr7.1	CDS	5798011	5798102	5798011	ID=cds.MS.gene071611.t1;Parent=MS.gene071611.t1
chr7.1	exon	5799059	5799125	5799059	ID=MS.gene071611.t1.exon2;Parent=MS.gene071611.t1
chr7.1	CDS	5799059	5799125	5799059	ID=cds.MS.gene071611.t1;Parent=MS.gene071611.t1
chr7.1	exon	5799635	5799927	5799635	ID=MS.gene071611.t1.exon3;Parent=MS.gene071611.t1
chr7.1	CDS	5799635	5799927	5799635	ID=cds.MS.gene071611.t1;Parent=MS.gene071611.t1

Gene Sequence

>MS.gene071611

ATGGGAGTTGTAACTCTTGGTGAATTGAAGCCTAGTGTTTCAGGAAGAAGGACTTTTCGTCCAAGTTCAAGCATAAGACATGCCACTGAATGGTATTATAATTTTCTTACTACTTTTTTCTTTTTTTTTGAAGGATTCTTACTACTTCTAGAAGTTTTTATTTATTTACACATATTCCTAGAAGTTATTCAGAAACATGCAAGTGTCTAAGTCTGTCTCATATCTATAATACCACTTCAAGATTTCATGAAATTCAACAATACTTGAATGAGCTGACACAAGTCTTATTGAGTTCGAGTTTGGGGGTCTTACACAACATCAACGTTAAAGCTCTTGAGATAGCTATACCTCCCTTCAGATCCTATTATGGTTGATGAACTAATTTCCTACGAAATACCAACACAAACACGGACATTGATAACAATTTAAGAAAATGAACGTAGTCAAATATAACTAATCGTGTTAGTGTCGTGTCGTTATTGGACACCTTGAGATTGGAAAATTAGATGTAAAATTTGACCTTGATGTAGTCCTTTTACCAAACAATGACATGATGCTCGATTTTGAATGGTTTAGACCTCATCTGTTAGCTATATGAAACAATTGATGTTTTTCATCCATCAATTATTATCATACTATTGTTTTAGCTTTTGGCCTAAATGAATTTGGAAATGCAAAGCTCACCGACAATGGACAATTTTTTTGGCTTCACATAGAACATGACAACTGTGAAATCAACTTGACCATGCTAGCGTGAAACTCCAATTATTTGCATTAATGGGTTCCACTATATTGAAATAGCCATTCCTAAAATATTATTTTGATACAGAAATCAAAACTTAAGTAACCATTTTGAGGCTATTCTTATCCAATGTCTTATTATTGCACCATTTATTGCATTACATAAAAAATATATGCTAATAGAGTAGTCTCTTTCAAATGTCTCTGAAAATTTCAATTTTTGGTAATAATAATGTACGCCTTGCCATGCTTTGAAATTTTCATGTCTACGTGTATATAATGATTCAGGAAGAGTCTTTTTTTGCAGGCCAATATCTGATGTCTCCAGTGATCTTACCATCCAAGTAGGAGCATCAACCTATTCACTTCACAAGGTAAATTAAAACAATCTTCCATTCTGATATGTTATAATTATACATTCAACATGGTTTTCTCTGGTTTACATTCCAAGTTAGGTGGCAATGAATAGTTGGCAATTTTCTAAGTAGATCATTATAATTTTGCTATGAACATACATAGTTAATTAATTTTATGAGTTTAATTTTGATACACCGTTAGTATAAAAGGTTTTAATCGTCAACAAATCACAAACAATCATATCTGTGACTTAAGAAATAGTTGTGATTAATAAAATCAAACATTTTTAATGATCAGACGATAATGATTGATTGACAACGTAAAAAAAATCTTTATAATGATACTGTATATGAATTCAATCCATCTTATATAGTATGTTATCAGCAGATAATTTTTCCTGTCAAATGTAGTTTTGCTATATGTGTAGTTTCCATTATGCTTTTGAGCTCTTGGTGGCTTCTTTTCATGCATCATTATGCATATTTTCTCACTACTTTGTACTTAAACTCTTGTTATTTTTCCCTAGTTTCCTCTTGTTTCTAGGAGTGGAAGATTTAGGAAGCTGCTATCTGAATCAAAAGATTCTAAAGTTCCGCGCGTAAGTCTTCCGACCGTGCCAGGTGGTGTAGATGCATTTGAAATAGCTGCAAAATTCTGCTATGGAATCAATGTGGAATTCACCCTCTCGAATATTGCTATGCTATATTGTATATCTCATTTTCTTGAAATGACAGAAGAATTCTCAGAAAAGAATTTGGTGACAAGAGCTGAATCATATCTAAAGGAAACGGTACTCCAAACACATCGAACATTATACAG

Protein sequence

>MS.gene071611.t1

MGVVTLGELKPSVSGRRTFRPSSSIRHATEWPISDVSSDLTIQVGASTYSLHKFPLVSRSGRFRKLLSESKDSKVPRVSLPTVPGGVDAFEIAAKFCYGINVEFTLSNIAMLYCISHFLEMTEEFSEKNLVTRAESYLKETVLQTHRTLY