AlfalfaGEDB | MS.gene071712

M. sativa cultivar XinJiangDaYe / MS.gene071712

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071712.t1	RHN47318.1	57.9	145	58	3	1	144	1	143	4.70E-32	147.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071712.t1	A0A072U1D6	57.9	145	58	3	1	144	1	143	3.4e-32	147.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene071712.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071712.t1	MTR_7g083360	57.931	145	58	3	1	144	1	143	5.49e-46	147
MS.gene071712.t1	MTR_7g083370	50.000	144	55	3	1	136	1	135	2.33e-36	122
MS.gene071712.t1	MTR_7g083330	43.750	144	66	3	3	139	11	146	2.58e-24	93.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 34 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCCTGGCAGCCTCCA+TGG	0.506870	7.2:-23946381	None:intergenic
AACAGATATGTTTACTGGAT+AGG	0.498598	7.2:+23946848	MS.gene071712:CDS
AAGAGCTGGAAAATGGTGAA+TGG	0.577975	7.2:+23946765	MS.gene071712:CDS
AAGCTCTGATGACAAGATGG+TGG	0.668891	7.2:+23946882	MS.gene071712:CDS
AATATGGATGCAAGAAGAGC+TGG	0.531324	7.2:+23946751	MS.gene071712:CDS
ACAGATATGTTTACTGGATA+GGG	0.475339	7.2:+23946849	MS.gene071712:CDS
ACATGACATTTGGAAAAGGT+TGG	0.561346	7.2:-23946332	None:intergenic
ACTGAGCCATGGAGGCTGCC+AGG	0.492712	7.2:+23946375	MS.gene071712:CDS
AGTACTATTTCTTTGATCTC+AGG	0.411387	7.2:+23946713	MS.gene071712:CDS
ATATATACTCTTTGGAGAAT+AGG	0.391125	7.2:+23946689	MS.gene071712:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGATATGTTTACTGGAT+AGG	+	chr7.2:23946848-23946867	MS.gene071712:CDS	30.0%
ACAGATATGTTTACTGGATA+GGG	+	chr7.2:23946849-23946868	MS.gene071712:CDS	30.0%
ATATATTTCAAACTGAGCCA+TGG	+	chr7.2:23946364-23946383	MS.gene071712:CDS	30.0%
GAAAGAACAGATATGTTTAC+TGG	+	chr7.2:23946843-23946862	MS.gene071712:CDS	30.0%
TCAAATTCTGACATGACATT+TGG	-	chr7.2:23946345-23946364	None:intergenic	30.0%
ACATGACATTTGGAAAAGGT+TGG	-	chr7.2:23946335-23946354	None:intergenic	35.0%
GTAGAATTTCTGATCCAACT+AGG	+	chr7.2:23946924-23946943	MS.gene071712:CDS	35.0%
TCTGACATGACATTTGGAAA+AGG	-	chr7.2:23946339-23946358	None:intergenic	35.0%
TGGATGCATGAATTTGTCAT+CGG	+	chr7.2:23946902-23946921	MS.gene071712:CDS	35.0%
TTGTGTCTTAGACATGCAAT+TGG	+	chr7.2:23946545-23946564	MS.gene071712:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	23946229	23946946	23946229	ID=MS.gene071712
chr7.2	mRNA	23946229	23946946	23946229	ID=MS.gene071712.t1;Parent=MS.gene071712
chr7.2	exon	23946229	23946399	23946229	ID=MS.gene071712.t1.exon1;Parent=MS.gene071712.t1
chr7.2	CDS	23946229	23946399	23946229	ID=cds.MS.gene071712.t1;Parent=MS.gene071712.t1
chr7.2	exon	23946686	23946946	23946686	ID=MS.gene071712.t1.exon2;Parent=MS.gene071712.t1
chr7.2	CDS	23946686	23946946	23946686	ID=cds.MS.gene071712.t1;Parent=MS.gene071712.t1

Gene Sequence

>MS.gene071712

ATGGCGGTAGCTAATGCTGAGGTTGATCTACCTGCTGGATTCAGGTTTGATCCAACCGATCGCGTACTTGTTGAGTGCTACCTGACGAAAGAAAAATATACAACCAACCTTTTCCAAATGTCATGTCAGAATTTGATATATTTCAAACTGAGCCATGGAGGCTGCCAGGAGGTTTGTGAAAGAAAACAAAAGTTATTTTCTAATGTTTTTTTTAGCCCTTTATTCTCTTTCTTTATGACCATTGTGTGTTTTATCAATAAAAATCAAATTTTCTTAGTGTTCTTTGATGGATTTTCATTGATCTTGAGAATGAACGTTGTGTCTTAGACATGCAATTGGAGGGGAGGAGACTTAAAAATTCCATGAAATGCTTATATGATGTTTTTATGTGGTAATTAACACAAATTGATTTATTCATTTTGGGTCATTTCAATTTGTTATTTTTTTTTTGTTGCAGAAAATATATACTCTTTGGAGAATAGGAAGTACTATTTCTTTGATCTCAGGAACCGTAGGTTCGAGAATATGGATGCAAGAAGAGCTGGAAAATGGTGAATGGCGAATAGTTCAAAGGAATGAGGAGTTTGCTCATTCAAACAATCAACTGATTGTGAGAAAGAACAGATATGTTTACTGGATAGGGCAAGAAATTCAAGCTCTGATGACAAGATGGTGGATGCATGAATTTGTCATCGGTAGAATTTCTGATCCAACTAGG

Protein sequence

>MS.gene071712.t1

MAVANAEVDLPAGFRFDPTDRVLVECYLTKEKYTTNLFQMSCQNLIYFKLSHGGCQEKIYTLWRIGSTISLISGTVGSRIWMQEELENGEWRIVQRNEEFAHSNNQLIVRKNRYVYWIGQEIQALMTRWWMHEFVIGRISDPTR