Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071804.t1 | XP_013444869.1 | 98.6 | 208 | 3 | 0 | 5 | 212 | 90 | 297 | 5.40E-85 | 323.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071804.t1 | Q9M2D9 | 47.6 | 212 | 86 | 6 | 5 | 212 | 88 | 278 | 4.3e-38 | 159.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071804.t1 | A0A072TN47 | 98.6 | 208 | 3 | 0 | 5 | 212 | 90 | 297 | 3.9e-85 | 323.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene071804.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071804.t1 | MTR_8g031360 | 98.558 | 208 | 3 | 0 | 5 | 212 | 90 | 297 | 2.88e-150 | 419 |
MS.gene071804.t1 | MTR_7g076740 | 62.264 | 212 | 71 | 6 | 5 | 211 | 89 | 296 | 3.09e-78 | 237 |
MS.gene071804.t1 | MTR_1g100653 | 38.667 | 225 | 96 | 8 | 1 | 211 | 84 | 280 | 4.88e-37 | 131 |
MS.gene071804.t1 | MTR_7g011170 | 60.976 | 82 | 31 | 1 | 5 | 86 | 88 | 168 | 9.73e-26 | 101 |
MS.gene071804.t1 | MTR_4g082230 | 59.770 | 87 | 23 | 3 | 5 | 84 | 88 | 169 | 8.91e-25 | 100 |
MS.gene071804.t1 | MTR_4g082290 | 59.770 | 87 | 23 | 3 | 5 | 84 | 88 | 169 | 8.91e-25 | 100 |
MS.gene071804.t1 | MTR_6g012690 | 52.727 | 110 | 38 | 4 | 5 | 110 | 88 | 187 | 9.97e-25 | 99.8 |
MS.gene071804.t1 | MTR_5g042030 | 54.667 | 75 | 29 | 1 | 5 | 79 | 83 | 152 | 1.38e-19 | 84.7 |
MS.gene071804.t1 | MTR_4g102380 | 78.571 | 42 | 9 | 0 | 5 | 46 | 88 | 129 | 1.24e-16 | 76.6 |
MS.gene071804.t1 | MTR_3g077110 | 45.794 | 107 | 39 | 4 | 5 | 96 | 88 | 190 | 1.72e-16 | 77.0 |
MS.gene071804.t1 | MTR_5g078140 | 73.333 | 45 | 12 | 0 | 5 | 49 | 88 | 132 | 3.51e-16 | 75.9 |
MS.gene071804.t1 | MTR_4g091490 | 75.610 | 41 | 10 | 0 | 5 | 45 | 89 | 129 | 4.75e-16 | 75.9 |
MS.gene071804.t1 | MTR_5g007370 | 73.171 | 41 | 11 | 0 | 5 | 45 | 88 | 128 | 5.02e-16 | 75.1 |
MS.gene071804.t1 | MTR_3g074520 | 73.171 | 41 | 11 | 0 | 5 | 45 | 88 | 128 | 5.33e-16 | 75.5 |
MS.gene071804.t1 | MTR_1g112760 | 73.810 | 42 | 11 | 0 | 5 | 46 | 89 | 130 | 7.22e-16 | 73.9 |
MS.gene071804.t1 | MTR_2g011660 | 73.171 | 41 | 11 | 0 | 5 | 45 | 89 | 129 | 1.01e-15 | 74.7 |
MS.gene071804.t1 | MTR_4g105130 | 65.217 | 46 | 16 | 0 | 5 | 50 | 88 | 133 | 1.44e-15 | 74.7 |
MS.gene071804.t1 | MTR_4g478180 | 70.732 | 41 | 12 | 0 | 5 | 45 | 89 | 129 | 2.42e-15 | 73.9 |
MS.gene071804.t1 | MTR_4g073420 | 39.000 | 100 | 56 | 1 | 5 | 104 | 88 | 182 | 3.91e-15 | 72.8 |
MS.gene071804.t1 | MTR_2g064160 | 65.217 | 46 | 16 | 0 | 5 | 50 | 87 | 132 | 6.54e-15 | 72.4 |
MS.gene071804.t1 | MTR_3g083540 | 63.043 | 46 | 17 | 0 | 1 | 46 | 113 | 158 | 9.62e-15 | 71.6 |
MS.gene071804.t1 | MTR_1g085640 | 72.093 | 43 | 12 | 0 | 5 | 47 | 88 | 130 | 1.04e-14 | 72.4 |
MS.gene071804.t1 | MTR_1g085040 | 72.093 | 43 | 12 | 0 | 5 | 47 | 88 | 130 | 1.12e-14 | 72.0 |
MS.gene071804.t1 | MTR_8g095390 | 58.333 | 48 | 20 | 0 | 1 | 48 | 84 | 131 | 1.91e-14 | 70.9 |
MS.gene071804.t1 | MTR_2g089620 | 59.259 | 54 | 21 | 1 | 5 | 58 | 88 | 140 | 2.04e-14 | 70.9 |
MS.gene071804.t1 | MTR_5g029840 | 65.854 | 41 | 14 | 0 | 5 | 45 | 88 | 128 | 2.98e-14 | 70.5 |
MS.gene071804.t1 | MTR_7g110830 | 69.767 | 43 | 13 | 0 | 5 | 47 | 88 | 130 | 3.52e-14 | 70.5 |
MS.gene071804.t1 | MTR_6g009430 | 60.870 | 46 | 18 | 0 | 2 | 47 | 85 | 130 | 3.52e-14 | 70.5 |
MS.gene071804.t1 | MTR_3g461490 | 53.247 | 77 | 26 | 4 | 5 | 81 | 88 | 154 | 6.88e-14 | 69.7 |
MS.gene071804.t1 | MTR_3g065440 | 66.667 | 45 | 15 | 0 | 5 | 49 | 88 | 132 | 7.72e-14 | 69.3 |
MS.gene071804.t1 | MTR_3g045430 | 67.442 | 43 | 14 | 0 | 5 | 47 | 89 | 131 | 9.61e-14 | 68.9 |
MS.gene071804.t1 | MTR_5g079670 | 65.000 | 40 | 14 | 0 | 5 | 44 | 87 | 126 | 2.77e-13 | 66.6 |
MS.gene071804.t1 | MTR_3g097450 | 61.905 | 42 | 16 | 0 | 5 | 46 | 88 | 129 | 5.77e-13 | 66.6 |
MS.gene071804.t1 | MTR_4g485530 | 55.102 | 49 | 19 | 1 | 5 | 53 | 88 | 133 | 1.49e-12 | 63.9 |
MS.gene071804.t1 | MTR_7g111290 | 69.767 | 43 | 13 | 0 | 5 | 47 | 46 | 88 | 1.89e-11 | 62.8 |
MS.gene071804.t1 | MTR_5g007310 | 80.645 | 31 | 6 | 0 | 15 | 45 | 6 | 36 | 1.98e-11 | 61.6 |
MS.gene071804.t1 | MTR_7g111290 | 69.767 | 43 | 13 | 0 | 5 | 47 | 88 | 130 | 3.21e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071804.t1 | AT3G61250 | 50.704 | 213 | 78 | 7 | 5 | 212 | 88 | 278 | 1.19e-57 | 184 |
MS.gene071804.t1 | AT5G15310 | 54.545 | 88 | 40 | 0 | 1 | 88 | 5 | 92 | 4.60e-28 | 106 |
MS.gene071804.t1 | AT3G01140 | 56.383 | 94 | 35 | 1 | 5 | 92 | 88 | 181 | 4.14e-27 | 106 |
MS.gene071804.t1 | AT5G15310 | 57.143 | 84 | 36 | 0 | 5 | 88 | 88 | 171 | 5.47e-27 | 103 |
MS.gene071804.t1 | AT5G15310 | 57.143 | 84 | 36 | 0 | 5 | 88 | 88 | 171 | 5.81e-27 | 105 |
MS.gene071804.t1 | AT5G15310 | 57.143 | 84 | 36 | 0 | 5 | 88 | 88 | 171 | 5.94e-27 | 105 |
MS.gene071804.t1 | AT3G01140 | 56.383 | 94 | 35 | 1 | 5 | 92 | 131 | 224 | 1.22e-26 | 105 |
MS.gene071804.t1 | AT4G28110 | 68.182 | 44 | 14 | 0 | 2 | 45 | 1 | 44 | 6.39e-17 | 75.9 |
MS.gene071804.t1 | AT5G10280 | 39.815 | 108 | 40 | 2 | 5 | 91 | 88 | 191 | 1.12e-16 | 77.4 |
MS.gene071804.t1 | AT1G22640 | 36.567 | 134 | 76 | 4 | 5 | 133 | 16 | 145 | 1.88e-16 | 74.3 |
MS.gene071804.t1 | AT5G61420 | 71.111 | 45 | 13 | 0 | 5 | 49 | 9 | 53 | 2.76e-16 | 75.9 |
MS.gene071804.t1 | AT5G65230 | 75.610 | 41 | 10 | 0 | 5 | 45 | 88 | 128 | 4.03e-16 | 75.9 |
MS.gene071804.t1 | AT5G07700 | 66.000 | 50 | 17 | 0 | 5 | 54 | 88 | 137 | 6.19e-16 | 75.5 |
MS.gene071804.t1 | AT5G07700 | 66.000 | 50 | 17 | 0 | 5 | 54 | 88 | 137 | 6.19e-16 | 75.5 |
MS.gene071804.t1 | AT1G22640 | 37.607 | 117 | 66 | 3 | 5 | 118 | 31 | 143 | 7.11e-16 | 73.2 |
MS.gene071804.t1 | AT4G22680 | 71.429 | 42 | 12 | 0 | 5 | 46 | 88 | 129 | 7.71e-16 | 74.3 |
MS.gene071804.t1 | AT3G13540 | 69.048 | 42 | 13 | 0 | 5 | 46 | 99 | 140 | 1.27e-15 | 73.6 |
MS.gene071804.t1 | AT5G61420 | 71.111 | 45 | 13 | 0 | 5 | 49 | 88 | 132 | 1.43e-15 | 74.7 |
MS.gene071804.t1 | AT4G05100 | 70.732 | 41 | 12 | 0 | 5 | 45 | 89 | 129 | 1.71e-15 | 73.9 |
MS.gene071804.t1 | AT3G02940 | 73.171 | 41 | 11 | 0 | 5 | 45 | 88 | 128 | 2.06e-15 | 73.6 |
MS.gene071804.t1 | AT4G21440 | 68.293 | 41 | 13 | 0 | 5 | 45 | 88 | 128 | 2.39e-15 | 73.9 |
MS.gene071804.t1 | AT3G02940 | 73.171 | 41 | 11 | 0 | 5 | 45 | 88 | 128 | 2.77e-15 | 73.6 |
MS.gene071804.t1 | AT3G02940 | 73.171 | 41 | 11 | 0 | 5 | 45 | 88 | 128 | 2.77e-15 | 73.6 |
MS.gene071804.t1 | AT5G16770 | 73.171 | 41 | 11 | 0 | 5 | 45 | 88 | 128 | 2.91e-15 | 73.6 |
MS.gene071804.t1 | AT5G16770 | 73.171 | 41 | 11 | 0 | 5 | 45 | 88 | 128 | 2.91e-15 | 73.6 |
MS.gene071804.t1 | AT1G22640 | 37.607 | 117 | 66 | 4 | 5 | 118 | 88 | 200 | 3.11e-15 | 72.4 |
MS.gene071804.t1 | AT4G17785 | 70.732 | 41 | 12 | 0 | 5 | 45 | 89 | 129 | 3.49e-15 | 73.6 |
MS.gene071804.t1 | AT5G16600 | 72.093 | 43 | 12 | 0 | 5 | 47 | 88 | 130 | 3.55e-15 | 73.2 |
MS.gene071804.t1 | AT4G17785 | 70.732 | 41 | 12 | 0 | 5 | 45 | 89 | 129 | 4.03e-15 | 73.2 |
MS.gene071804.t1 | AT5G16770 | 73.171 | 41 | 11 | 0 | 5 | 45 | 88 | 128 | 4.16e-15 | 73.2 |
MS.gene071804.t1 | AT5G16770 | 73.171 | 41 | 11 | 0 | 5 | 45 | 88 | 128 | 4.16e-15 | 73.2 |
MS.gene071804.t1 | AT1G34670 | 73.171 | 41 | 11 | 0 | 5 | 45 | 88 | 128 | 6.15e-15 | 72.8 |
MS.gene071804.t1 | AT4G12350 | 69.048 | 42 | 13 | 0 | 5 | 46 | 88 | 129 | 7.91e-15 | 72.0 |
MS.gene071804.t1 | AT1G18570 | 68.889 | 45 | 14 | 0 | 5 | 49 | 89 | 133 | 1.15e-14 | 72.0 |
MS.gene071804.t1 | AT5G62320 | 47.222 | 72 | 27 | 1 | 5 | 65 | 96 | 167 | 1.82e-14 | 70.5 |
MS.gene071804.t1 | AT5G54230 | 70.732 | 41 | 12 | 0 | 5 | 45 | 88 | 128 | 1.88e-14 | 71.2 |
MS.gene071804.t1 | AT1G09540 | 64.583 | 48 | 17 | 0 | 5 | 52 | 88 | 135 | 2.18e-14 | 71.2 |
MS.gene071804.t1 | AT4G28110 | 68.293 | 41 | 13 | 0 | 5 | 45 | 88 | 128 | 2.35e-14 | 70.5 |
MS.gene071804.t1 | AT4G09460 | 64.444 | 45 | 16 | 0 | 5 | 49 | 88 | 132 | 2.68e-14 | 69.7 |
MS.gene071804.t1 | AT4G34990 | 66.667 | 42 | 14 | 0 | 5 | 46 | 88 | 129 | 3.20e-14 | 70.1 |
MS.gene071804.t1 | AT5G07690 | 69.767 | 43 | 13 | 0 | 5 | 47 | 88 | 130 | 4.99e-14 | 70.1 |
MS.gene071804.t1 | AT1G57560 | 65.116 | 43 | 15 | 0 | 5 | 47 | 88 | 130 | 6.21e-14 | 69.7 |
MS.gene071804.t1 | AT4G38620 | 62.222 | 45 | 17 | 0 | 5 | 49 | 88 | 132 | 6.40e-14 | 69.3 |
MS.gene071804.t1 | AT2G16720 | 50.000 | 58 | 29 | 0 | 5 | 62 | 88 | 145 | 6.69e-14 | 68.9 |
MS.gene071804.t1 | AT1G57560 | 65.116 | 43 | 15 | 0 | 5 | 47 | 88 | 130 | 8.49e-14 | 68.9 |
MS.gene071804.t1 | AT1G74430 | 64.444 | 45 | 16 | 0 | 5 | 49 | 19 | 63 | 9.99e-14 | 67.4 |
MS.gene071804.t1 | AT5G56110 | 67.442 | 43 | 14 | 0 | 5 | 47 | 88 | 130 | 1.16e-13 | 68.9 |
MS.gene071804.t1 | AT1G35515 | 64.286 | 42 | 15 | 0 | 5 | 46 | 88 | 129 | 3.20e-13 | 66.2 |
MS.gene071804.t1 | AT5G26660 | 63.636 | 44 | 16 | 0 | 5 | 48 | 57 | 100 | 3.59e-13 | 67.4 |
MS.gene071804.t1 | AT1G74430 | 64.444 | 45 | 16 | 0 | 5 | 49 | 88 | 132 | 4.98e-13 | 66.6 |
MS.gene071804.t1 | AT4G01680 | 72.500 | 40 | 11 | 0 | 5 | 44 | 88 | 127 | 5.47e-13 | 66.2 |
MS.gene071804.t1 | AT5G26660 | 63.636 | 44 | 16 | 0 | 5 | 48 | 88 | 131 | 6.12e-13 | 67.0 |
MS.gene071804.t1 | AT4G01680 | 72.500 | 40 | 11 | 0 | 5 | 44 | 88 | 127 | 8.02e-13 | 66.6 |
MS.gene071804.t1 | AT4G01680 | 72.500 | 40 | 11 | 0 | 5 | 44 | 100 | 139 | 9.11e-13 | 66.6 |
MS.gene071804.t1 | AT5G60890 | 66.667 | 45 | 15 | 0 | 5 | 49 | 88 | 132 | 1.37e-12 | 65.5 |
MS.gene071804.t1 | AT5G14340 | 59.524 | 42 | 17 | 0 | 5 | 46 | 10 | 51 | 1.05e-11 | 61.6 |
MS.gene071804.t1 | AT3G28470 | 48.810 | 84 | 31 | 2 | 2 | 73 | 85 | 168 | 2.02e-11 | 62.4 |
MS.gene071804.t1 | AT1G74650 | 71.429 | 35 | 10 | 0 | 2 | 36 | 4 | 38 | 2.43e-11 | 61.6 |
MS.gene071804.t1 | AT3G12720 | 61.538 | 39 | 15 | 0 | 5 | 43 | 98 | 136 | 2.69e-11 | 62.0 |
MS.gene071804.t1 | AT1G18710 | 64.286 | 42 | 15 | 0 | 5 | 46 | 88 | 129 | 6.40e-11 | 60.8 |
MS.gene071804.t1 | AT1G08810 | 75.758 | 33 | 8 | 0 | 1 | 33 | 1 | 33 | 6.58e-11 | 59.7 |
MS.gene071804.t1 | AT1G08810 | 75.758 | 33 | 8 | 0 | 1 | 33 | 1 | 33 | 6.58e-11 | 59.7 |
MS.gene071804.t1 | AT1G74080 | 59.524 | 42 | 17 | 0 | 5 | 46 | 88 | 129 | 7.05e-11 | 60.8 |
MS.gene071804.t1 | AT1G16490 | 80.000 | 30 | 6 | 0 | 4 | 33 | 20 | 49 | 7.26e-11 | 59.7 |
MS.gene071804.t1 | AT5G14340 | 59.524 | 42 | 17 | 0 | 5 | 46 | 100 | 141 | 8.82e-11 | 60.5 |
Find 33 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACGAATTTGATTTGGAAAT+TGG | 0.082125 | 8.3:+64100676 | None:intergenic |
CAATAACAACATTCCTTCTT+TGG | 0.206897 | 8.3:-64100569 | MS.gene071804:CDS |
CTGACTATTTCCTTAAGATA+TGG | 0.244127 | 8.3:-64100528 | MS.gene071804:CDS |
CACTGCACTGCAACTCTTGT+TGG | 0.308906 | 8.3:-64100254 | MS.gene071804:CDS |
GGCGATAGACGAATTTGATT+TGG | 0.329986 | 8.3:+64100669 | None:intergenic |
ATCTCATTGTCAGTTCTTCC+TGG | 0.339461 | 8.3:+64100793 | None:intergenic |
CTTCAGAGTTCCATATCTTA+AGG | 0.345177 | 8.3:+64100518 | None:intergenic |
ACAATGAGATCAAGAATCTA+TGG | 0.367759 | 8.3:-64100780 | MS.gene071804:CDS |
ACGAATTTGATTTGGAAATT+GGG | 0.374944 | 8.3:+64100677 | None:intergenic |
CACACGCCACATGGCTCAAT+GGG | 0.411490 | 8.3:-64100647 | MS.gene071804:CDS |
AAGCTCATATCATTGTTAGA+AGG | 0.437167 | 8.3:+64100226 | None:intergenic |
CATATTGAATGATAGAAATC+AGG | 0.439759 | 8.3:-64101169 | None:intergenic |
CCACACGCCACATGGCTCAA+TGG | 0.443811 | 8.3:-64100648 | MS.gene071804:CDS |
AATTACAAGTCATTTGATGT+AGG | 0.475589 | 8.3:-64100322 | MS.gene071804:CDS |
AAGATATGGAACTCTGAAGT+TGG | 0.497165 | 8.3:-64100514 | MS.gene071804:CDS |
GCTATTGGTTCATGAGTTTG+TGG | 0.511715 | 8.3:+64100715 | None:intergenic |
AAAGAAACGTCTCATATGCA+TGG | 0.523969 | 8.3:-64100746 | MS.gene071804:CDS |
TCAATTGCCTCTCAGCTACC+AGG | 0.524112 | 8.3:-64100811 | MS.gene071804:CDS |
CACTTTCCCATTGAGCCATG+TGG | 0.532790 | 8.3:+64100641 | None:intergenic |
TTCGTCGTCTGATTTGCGAC+CGG | 0.551788 | 8.3:+64100477 | None:intergenic |
CTTCTTGAGACATTGAACTC+TGG | 0.559731 | 8.3:+64100431 | None:intergenic |
TGTAATAACAACAACAAATG+TGG | 0.560142 | 8.3:-64100400 | MS.gene071804:CDS |
TACTACAACAAGCAATGTGA+TGG | 0.566980 | 8.3:-64100362 | MS.gene071804:CDS |
CAGAGTTCAATGTCTCAAGA+AGG | 0.569037 | 8.3:-64100430 | MS.gene071804:CDS |
AAGAAACGTCTCATATGCAT+GGG | 0.571800 | 8.3:-64100745 | MS.gene071804:CDS |
AAGTAATGTGATGAGGCTAT+TGG | 0.582396 | 8.3:+64100700 | None:intergenic |
CAAGACTTGAAGCAGAAGCA+AGG | 0.585545 | 8.3:-64100618 | MS.gene071804:CDS |
AGAGTTCAATGTCTCAAGAA+GGG | 0.618934 | 8.3:-64100429 | MS.gene071804:CDS |
GTCTATCGCCACACGCCACA+TGG | 0.619157 | 8.3:-64100656 | MS.gene071804:CDS |
TACAACAAGCAATGTGATGG+AGG | 0.620346 | 8.3:-64100359 | MS.gene071804:CDS |
CCATTGAGCCATGTGGCGTG+TGG | 0.621705 | 8.3:+64100648 | None:intergenic |
AGTTCTTCCTGGTAGCTGAG+AGG | 0.678055 | 8.3:+64100804 | None:intergenic |
AATTGGGAAGTAATGTGATG+AGG | 0.686160 | 8.3:+64100693 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATTTATACTAACATAA+TGG | + | chr8.3:64100289-64100308 | None:intergenic | 10.0% |
!! | AGTATAAATATTTCATACTA+GGG | - | chr8.3:64100296-64100315 | MS.gene071804:CDS | 15.0% |
!! | TAGTATAAATATTTCATACT+AGG | - | chr8.3:64100295-64100314 | MS.gene071804:CDS | 15.0% |
!! | AAATTCTTAAAATATAGCCA+TGG | + | chr8.3:64100514-64100533 | None:intergenic | 20.0% |
!! | GTAAACATCAGTAATAATTT+AGG | + | chr8.3:64100382-64100401 | None:intergenic | 20.0% |
!! | TGATTAAAAATATCACATGA+AGG | + | chr8.3:64100349-64100368 | None:intergenic | 20.0% |
!!! | AACACTTTTAAATAATCTGT+TGG | - | chr8.3:64100248-64100267 | MS.gene071804:CDS | 20.0% |
! | AAATGTAACAATTTCACAGA+TGG | - | chr8.3:64100540-64100559 | MS.gene071804:CDS | 25.0% |
! | AATGTAACAATTTCACAGAT+GGG | - | chr8.3:64100541-64100560 | MS.gene071804:CDS | 25.0% |
! | AATTACAAGTCATTTGATGT+AGG | - | chr8.3:64101055-64101074 | MS.gene071804:intron | 25.0% |
! | TCAGTAATAATTTAGGAAAG+TGG | + | chr8.3:64100375-64100394 | None:intergenic | 25.0% |
! | TGTAATAACAACAACAAATG+TGG | - | chr8.3:64100977-64100996 | MS.gene071804:intron | 25.0% |
!!! | ACGAATTTGATTTGGAAATT+GGG | + | chr8.3:64100703-64100722 | None:intergenic | 25.0% |
AAATATAGCCATGGAGAAAA+TGG | + | chr8.3:64100505-64100524 | None:intergenic | 30.0% | |
AAGCTCATATCATTGTTAGA+AGG | + | chr8.3:64101154-64101173 | None:intergenic | 30.0% | |
ACAATGAGATCAAGAATCTA+TGG | - | chr8.3:64100597-64100616 | MS.gene071804:CDS | 30.0% | |
CAATAACAACATTCCTTCTT+TGG | - | chr8.3:64100808-64100827 | MS.gene071804:CDS | 30.0% | |
CTGACTATTTCCTTAAGATA+TGG | - | chr8.3:64100849-64100868 | MS.gene071804:intron | 30.0% | |
!! | GACGAATTTGATTTGGAAAT+TGG | + | chr8.3:64100704-64100723 | None:intergenic | 30.0% |
AAAGAAACGTCTCATATGCA+TGG | - | chr8.3:64100631-64100650 | MS.gene071804:CDS | 35.0% | |
AAGAAACGTCTCATATGCAT+GGG | - | chr8.3:64100632-64100651 | MS.gene071804:CDS | 35.0% | |
AAGTAATGTGATGAGGCTAT+TGG | + | chr8.3:64100680-64100699 | None:intergenic | 35.0% | |
AATTGGGAAGTAATGTGATG+AGG | + | chr8.3:64100687-64100706 | None:intergenic | 35.0% | |
AGAGTTCAATGTCTCAAGAA+GGG | - | chr8.3:64100948-64100967 | MS.gene071804:intron | 35.0% | |
CTTCAGAGTTCCATATCTTA+AGG | + | chr8.3:64100862-64100881 | None:intergenic | 35.0% | |
TACTACAACAAGCAATGTGA+TGG | - | chr8.3:64101015-64101034 | MS.gene071804:intron | 35.0% | |
! | TATCACATGAAGGAGAGTAT+TGG | + | chr8.3:64100339-64100358 | None:intergenic | 35.0% |
! | TTTCATGTCCATTTTCTCCA+TGG | - | chr8.3:64100494-64100513 | MS.gene071804:CDS | 35.0% |
!! | AAGATATGGAACTCTGAAGT+TGG | - | chr8.3:64100863-64100882 | MS.gene071804:intron | 35.0% |
!! | ATGTGATGGAGGATTTTGAA+TGG | - | chr8.3:64101029-64101048 | MS.gene071804:intron | 35.0% |
ATCTCATTGTCAGTTCTTCC+TGG | + | chr8.3:64100587-64100606 | None:intergenic | 40.0% | |
CAGAGTTCAATGTCTCAAGA+AGG | - | chr8.3:64100947-64100966 | MS.gene071804:intron | 40.0% | |
CTTCTTGAGACATTGAACTC+TGG | + | chr8.3:64100949-64100968 | None:intergenic | 40.0% | |
GGCGATAGACGAATTTGATT+TGG | + | chr8.3:64100711-64100730 | None:intergenic | 40.0% | |
TACAACAAGCAATGTGATGG+AGG | - | chr8.3:64101018-64101037 | MS.gene071804:intron | 40.0% | |
!! | GCTATTGGTTCATGAGTTTG+TGG | + | chr8.3:64100665-64100684 | None:intergenic | 40.0% |
!! | GTTTTGTTGCTTGCCAAAGA+AGG | + | chr8.3:64100824-64100843 | None:intergenic | 40.0% |
CAAGACTTGAAGCAGAAGCA+AGG | - | chr8.3:64100759-64100778 | MS.gene071804:CDS | 45.0% | |
! | GTTGGACAATCTTTTCGCAC+CGG | - | chr8.3:64100881-64100900 | MS.gene071804:intron | 45.0% |
AGTTCTTCCTGGTAGCTGAG+AGG | + | chr8.3:64100576-64100595 | None:intergenic | 50.0% | |
CACTGCACTGCAACTCTTGT+TGG | - | chr8.3:64101123-64101142 | MS.gene071804:intron | 50.0% | |
CACTTTCCCATTGAGCCATG+TGG | + | chr8.3:64100739-64100758 | None:intergenic | 50.0% | |
CATACTAGGGCTGTCTCATG+TGG | - | chr8.3:64100309-64100328 | MS.gene071804:CDS | 50.0% | |
TCAATTGCCTCTCAGCTACC+AGG | - | chr8.3:64100566-64100585 | MS.gene071804:CDS | 50.0% | |
! | TTCGTCGTCTGATTTGCGAC+CGG | + | chr8.3:64100903-64100922 | None:intergenic | 50.0% |
ACTAGGGCTGTCTCATGTGG+TGG | - | chr8.3:64100312-64100331 | MS.gene071804:CDS | 55.0% | |
CACACGCCACATGGCTCAAT+GGG | - | chr8.3:64100730-64100749 | MS.gene071804:CDS | 55.0% | |
CCACACGCCACATGGCTCAA+TGG | - | chr8.3:64100729-64100748 | MS.gene071804:CDS | 60.0% | |
CCATTGAGCCATGTGGCGTG+TGG | + | chr8.3:64100732-64100751 | None:intergenic | 60.0% | |
GTCTATCGCCACACGCCACA+TGG | - | chr8.3:64100721-64100740 | MS.gene071804:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 64100216 | 64101183 | 64100216 | ID=MS.gene071804 |
chr8.3 | mRNA | 64100216 | 64101183 | 64100216 | ID=MS.gene071804.t1;Parent=MS.gene071804 |
chr8.3 | exon | 64101170 | 64101183 | 64101170 | ID=MS.gene071804.t1.exon1;Parent=MS.gene071804.t1 |
chr8.3 | CDS | 64101170 | 64101183 | 64101170 | ID=cds.MS.gene071804.t1;Parent=MS.gene071804.t1 |
chr8.3 | exon | 64100216 | 64100840 | 64100216 | ID=MS.gene071804.t1.exon2;Parent=MS.gene071804.t1 |
chr8.3 | CDS | 64100216 | 64100840 | 64100216 | ID=cds.MS.gene071804.t1;Parent=MS.gene071804.t1 |
Gene Sequence |
Protein sequence |