AlfalfaGEDB | MS.gene071926

M. sativa cultivar XinJiangDaYe / MS.gene071926

KEGG: K00430
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004601 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016209 GO:0016301 GO:0016310 GO:0016491 GO:0016684 GO:0016740 GO:0016772 GO:0016773 GO:0016999 GO:0017001 GO:0017076 GO:0017144 GO:0019538 GO:0020037 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0042737 GO:0042743 GO:0042744 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:0072593 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00141.26 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071926.t1	XP_003593190.2	96.9	419	13	0	315	733	16	434	2.60E-203	718.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071926.t1	P22196	80.7	311	57	2	5	314	11	319	1.0e-139	498.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071926.t1	A0A396J2P3	96.9	419	13	0	315	733	16	434	1.9e-203	718.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071926.t1	MTR_2g008740	96.643	417	14	0	318	734	1	417	0.0	845
MS.gene071926.t1	MTR_2g008710	93.312	314	21	0	1	314	1	314	0.0	589
MS.gene071926.t1	MTR_2g008730	87.898	314	14	1	1	314	1	290	0.0	531
MS.gene071926.t1	MTR_4g114210	60.328	305	118	2	11	314	7	309	1.30e-130	390
MS.gene071926.t1	MTR_2g008160	50.699	286	138	3	29	312	26	310	2.67e-86	275
MS.gene071926.t1	MTR_1g025980	46.179	301	155	2	10	307	7	303	3.63e-84	270
MS.gene071926.t1	MTR_2g088770	47.231	307	154	6	10	312	10	312	2.09e-83	268
MS.gene071926.t1	MTR_5g022870	44.884	303	159	3	8	307	5	302	4.78e-82	264
MS.gene071926.t1	MTR_4g125940	46.474	312	155	6	10	314	12	318	9.28e-81	261
MS.gene071926.t1	MTR_8g075100	46.918	292	138	5	24	307	23	305	1.19e-80	260

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071926.t1	AT2G41480	61.661	313	118	2	3	314	6	317	3.99e-136	404
MS.gene071926.t1	AT5G39580	63.226	310	103	4	6	314	9	308	2.43e-132	394
MS.gene071926.t1	AT5G64120	62.025	316	103	4	11	314	7	317	8.79e-132	393
MS.gene071926.t1	AT5G64100	60.839	286	108	3	29	314	39	320	9.68e-113	344
MS.gene071926.t1	AT5G64110	57.840	287	119	2	28	314	35	319	3.54e-111	340
MS.gene071926.t1	AT4G25980	50.699	286	139	2	29	312	28	313	3.90e-95	298
MS.gene071926.t1	AT3G01190	46.774	310	154	6	5	312	8	308	5.00e-84	269
MS.gene071926.t1	AT4G11290	46.032	315	159	6	6	314	6	315	3.99e-83	267
MS.gene071926.t1	AT5G39580	66.321	193	60	1	6	198	9	196	8.37e-83	263
MS.gene071926.t1	AT1G05260	46.945	311	154	8	6	312	9	312	2.20e-82	265

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Find 146 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCTTAAACCAAGGTT+TGG	0.364260	2.4:+74397671	None:intergenic
AAACTCGAGGCTGCATGTCC+TGG	0.463842	2.4:-74397623	MS.gene071926:CDS
AAAGATACTTGGGTATAAGA+GGG	0.651176	2.4:-74396795	MS.gene071926:CDS
AACACATTGGTGCATGGCCA+AGG	0.568131	2.4:-74397887	MS.gene071926:CDS
AACAGAATCACGAGCTGCAA+GGG	0.565289	2.4:+74397574	None:intergenic
AACAGAATTGCATTGGATAC+TGG	0.369034	2.4:-74396928	MS.gene071926:CDS
AACCTCTTTACAACAATGGT+AGG	0.620331	2.4:+74395693	None:intergenic
AAGACTTCAAATTTCCATGA+GGG	0.585520	2.4:+74394989	None:intergenic
AAGAGGATAGAGATAGGAGA+AGG	0.535152	2.4:-74395867	MS.gene071926:CDS
AAGAGGCGTGGCTCGAGCAC+TGG	0.469235	2.4:-74395049	MS.gene071926:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATACTTGGGTATAAGA+GGG	-	chr2.4:74395496-74395515	MS.gene071926:intron	30.0%
AAGACTTCAAATTTCCATGA+GGG	+	chr2.4:74397305-74397324	None:intergenic	30.0%
AATCTTGAGTTCCAATTGAA+TGG	+	chr2.4:74397213-74397232	None:intergenic	30.0%
ACATCTGTACAAAGATACTT+GGG	-	chr2.4:74395486-74395505	MS.gene071926:intron	30.0%
AGACTTAAAACCATTCACTA+AGG	-	chr2.4:74396624-74396643	MS.gene071926:intron	30.0%
ATTGGAGATGAAAGATAGAT+AGG	-	chr2.4:74397846-74397865	MS.gene071926:CDS	30.0%
ATTTAGATCTCTTACCAACT+AGG	+	chr2.4:74395125-74395144	None:intergenic	30.0%
CTAGTTGAAGACAATAACAA+GGG	+	chr2.4:74396003-74396022	None:intergenic	30.0%
GAAACTTTAACACCAATTAG+TGG	+	chr2.4:74396979-74396998	None:intergenic	30.0%
GCTGTATATGAACTTGAAAA+AGG	+	chr2.4:74395879-74395898	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	74394350	74397963	74394350	ID=MS.gene071926
chr2.4	mRNA	74394350	74397963	74394350	ID=MS.gene071926.t1;Parent=MS.gene071926
chr2.4	exon	74397568	74397963	74397568	ID=MS.gene071926.t1.exon1;Parent=MS.gene071926.t1
chr2.4	CDS	74397568	74397963	74397568	ID=cds.MS.gene071926.t1;Parent=MS.gene071926.t1
chr2.4	exon	74397184	74397346	74397184	ID=MS.gene071926.t1.exon2;Parent=MS.gene071926.t1
chr2.4	CDS	74397184	74397346	74397184	ID=cds.MS.gene071926.t1;Parent=MS.gene071926.t1
chr2.4	exon	74396713	74397096	74396713	ID=MS.gene071926.t1.exon3;Parent=MS.gene071926.t1
chr2.4	CDS	74396713	74397096	74396713	ID=cds.MS.gene071926.t1;Parent=MS.gene071926.t1
chr2.4	exon	74395523	74396128	74395523	ID=MS.gene071926.t1.exon4;Parent=MS.gene071926.t1
chr2.4	CDS	74395523	74396128	74395523	ID=cds.MS.gene071926.t1;Parent=MS.gene071926.t1
chr2.4	exon	74394485	74395126	74394485	ID=MS.gene071926.t1.exon5;Parent=MS.gene071926.t1
chr2.4	CDS	74394485	74395126	74394485	ID=cds.MS.gene071926.t1;Parent=MS.gene071926.t1
chr2.4	exon	74394350	74394372	74394350	ID=MS.gene071926.t1.exon6;Parent=MS.gene071926.t1
chr2.4	CDS	74394350	74394372	74394350	ID=cds.MS.gene071926.t1;Parent=MS.gene071926.t1

Gene Sequence

>MS.gene071926

ATGGAGGGTAGTTTGCTTAAGGTTGTGTTTATTTTGCTTGTTTTGGGTATTGTGAACACATTGGTGCATGGCCAAGGGACACGTGTAGCATTCTATTCAAGTACATGTTCTCAAGCAGAATCCATTGTTAAGTCCACAGTTACATCTCATGTTAACTCTGATTCTTCTTTAGCACCTGGTTTACTTAGGATGCACTTTCATGATTGTTTTGTCCAAGGTTGTGACGCTTCTGTTCTCATTGCCGGTCCTGGCACTGAGAGAACAGCATTTCCAAACCTTGGTTTAAGAGGTTTTGAAGTTATTGATGATGCTAAGACAAAACTCGAGGCTGCATGTCCTGGTGTTGTCTCTTGTGCGGATATCCTTGCCCTTGCAGCTCGTGATTCTGTTGTTCTGGTAATTATCTAAGTTAACTATATATTGTACAAATGATAGTAAAGGAGATACTGCTAGAAAATGTTGAATTAGTTACACAAATATAAATTTTATGTTCATGGAATTTAGTCATTAAAATTAAAGATCAATATTCATTTTTTTTTATATGAATAATTCAACTTTTCTAATAAGTTCATAATTTGTTGAAATGTGGACCTAATTGATTTATGTATGCATTGTAGAGTGGCGGTCTTAGTTGGCAAGTTCCTACTGGGCGCAGAGACGGACGCGTGTCACAGGCTTCTGATGTCAATAACTTGCCTGCTCCTAGCGATTCTGTTGATGTCCAGAAACAAAAGTTTTCAGCAAAAGGCCTCAACACTCAAGACCTTGTCACCCTAGTTGGTAAGAGATCTAAATATTTTCAAAATTTATTTACCACTCTAGAATTACATTTTAAAGTTGCATTAATATTCAATGAATATATCATAGGTGGACATACAATCGGTACAACAGCATGTCAATTCTTCAGCAACAGATTGAGAAACTTCACTACAAATGGTGCAGCTGATCCTTCAACAGACCCTTCATTTCTTTCACAATTACAAACACTATGCCCTCAAAACAGTGGTGCTACAAACAGAATTGCATTGGATACTGGAAGTCAAAACAAATTTGATAATTCTTACTATGCTAATCTGAGAAACGGACGCGGAATTCTTCAATCTGATCAAGCATTGTGGAATGATGCTTCCACAAAGACATCTGTACAAAGATACTTGGGTATAAGAGGGTTACTTGGATTAAGATTTAATGTTGAATTTGGAAAATCAATGGTGAAGATGAGCAACATTGGAGTGAAGACCGGTGTTGATGGTGAAATTCGCAAGATATGTTCTGCTTTCAACTAAGTGCATATGTGGTTTTATTGATTTGTTTGTATGGTTGGAATGTTTGCCATTGATTTAAGTGTACAATATTTACTTATAGTTTGTTTTTGTTTTCTCTTTTTATTTTTGTTGACCAAACTAAAAATGTTGAAAGTGTAAAATTATTAAAAGAAAAGTGTGATATGTATTATTATATACTAATAATACAAACAAATTTTTCACTGGCCGTCCAGACTGAAAAACATAGCAAGAAGAATCCAACCTTTTTCAAGTTCATATACAGCTTTACACGACATGTCCAAGGTTGTTTTTGTATCAAACTATGTAGTAAATCACATCATGTCATATATCTTATTATTCTGAAAAGAATATCAATAGGTAGATGCCCTTGTTATTGTCTTCAACTAGGAGTGACTAATTAGGTATATTGAAAAGAAGATAGAAATGAGTCTCATGATTCATTTTCAGTTTCACTACTAAATTTTCTATGTCATAGCTACAATACTTCTTTCAATCTCAACTTCATAATGAGGTTTCCCCTTTTTGTTCTTCAACTTGTTGCTTTTTCAGTTCTTGCAATGGCTCAAGAAGGACCTAAAGGGGATAGTGAAGTCCAAAATAAATCTTCGGACGATAAAAACAACAACAATTCCAATCTTTTATTATTAATACTCAACGTGGTTCTTCTTCTTGCAATTATATTGCTATTGATTCTTTACTATAACACATCAAAAAAGCTCAACAGAATAGTCAAAGGACACATTAACACATTTCATGAACAAGAGAAAGATGTTGAAACAAGTATTGAGAAGAGGATAGAGATAGGAGAAGGAACAACAATGATGACAGTAGAAGAGAGAAAGGAGTTAATGTTCTTTAATGATGAGACAAAATTTCAAATGGGAGAACTTCTTAGAGCTTCTGCTGAGGCATTAGGTCATGGAATTATGGGGAATAGTTATAAGGCTATGTTGAATAATGGACCTACCATTGTTGTAAAGAGGTTAAGAGACTTAAAACCATTCACTAAGGAGGAATTTGCAAAGATAGTGAAAATGATTGCTGATCTTAAACACCCTAATTTGTTGCCTTTGCTTGCTTACTATCATTCCAGAGATGAGAAGCTAATGCTCTATAGATATGCACAGAATGGAAACCTTTTCTCACGACTTCATGGTAATTTACATCAACTTGCTCCTTTTTTTCATTCTGAATCTGTACATTAGTTTCAAGAAAACATATATAAGTTGAGTTTTGAGACACTAATATTTTCCTTATTTTTTATTGAACCGACATCGATTGGGTCGCAGTATCAGTTGTAAGGACGGGCAATACCATGAGCTTTTAGCTTATGACTAGCGCCACTAATTGGTGTTAAAGTTTCAAACAATTTTCAAGCAAAATGTTTTCTTTGATCAAAGTATAAAGAAAACTTGCATGTTAAAGTTTTACATAGTCTTAACATAGGTTTTCATGCTAAATTCACAATCATATATGACAATAATGTATAGTTACAAAGGGATTTTTGTCACAATAATGAATTAGTAACCAAATTGTGCATGACTTTATCAGATGGAAGAGATGGAAACAGGGTTCCATTCAATTGGAACTCAAGATTATCAGTGGCAAGAGGCGTGGCTCGAGCACTGGAATACCTTCACCTCAACAACAAGATCCATAACATTGTCCCTCATGGAAATTTGAAGTCTTCAAATGTACTATTTGATGAAAATGATTCAGTTTTTGTATCTGACTTTAGCCTTGCCGCGTTAATAGCACAACCAATAGCAGCTCAACATATGGTTGTTTACAAATCACCTGAATATGGTTATGCAAGAAAAGTTACAATGCAATCAGATGTTTGGAGTTATGGATCACTTTTAATAGAACTTGTAACTGGGAAAGTTTCTATGTGCTCAGCTCCACAAGGGACTAATGGTGTGGATCTTTGTAGTTGGGTTCATAGAGCTGTGAGAGAAGAATGGACAGCTGAAATATTTGACAAAGAAATATCTTGTCAAAAGAGTGCTCTTCCTGGGATGTTAAGGTTGTTGCAGATAGCAATGAGATGTATTGAAAGGTTCCCAGAGAAACGTCCTGAGATGAAAGAGGTTGTTAGAGAAGTGGAGAAAATACAACAGGTACACTTGATGTCAGAAGATGAGGATGATGTGTCTTGTGATGTGTCTCTAACTGATGATTCCTTTTCAACTAGTAACTCAGGGATGTTTATTGGAGATGAAAGATAGATAGGTTGATAGATAGATTATCAAATTAAGGTTGGATGTCTAAACCTATAACATGTTCTTTTTGTTTTTGATATCAGGGTACAGTGCACCAAAAGAATAA

Protein sequence

>MS.gene071926.t1

MEGSLLKVVFILLVLGIVNTLVHGQGTRVAFYSSTCSQAESIVKSTVTSHVNSDSSLAPGLLRMHFHDCFVQGCDASVLIAGPGTERTAFPNLGLRGFEVIDDAKTKLEAACPGVVSCADILALAARDSVVLSGGLSWQVPTGRRDGRVSQASDVNNLPAPSDSVDVQKQKFSAKGLNTQDLVTLVGGHTIGTTACQFFSNRLRNFTTNGAADPSTDPSFLSQLQTLCPQNSGATNRIALDTGSQNKFDNSYYANLRNGRGILQSDQALWNDASTKTSVQRYLGIRGLLGLRFNVEFGKSMVKMSNIGVKTGVDVLAMAQEGPKGDSEVQNKSSDDKNNNNSNLLLLILNVVLLLAIILLLILYYNTSKKLNRIVKGHINTFHEQEKDVETSIEKRIEIGEGTTMMTVEERKELMFFNDETKFQMGELLRASAEALGHGIMGNSYKAMLNNGPTIVVKRLRDLKPFTKEEFAKIVKMIADLKHPNLLPLLAYYHSRDEKLMLYRYAQNGNLFSRLHDGRDGNRVPFNWNSRLSVARGVARALEYLHLNNKIHNIVPHGNLKSSNVLFDENDSVFVSDFSLAALIAQPIAAQHMVVYKSPEYGYARKVTMQSDVWSYGSLLIELVTGKVSMCSAPQGTNGVDLCSWVHRAVREEWTAEIFDKEISCQKSALPGMLRLLQIAMRCIERFPEKRPEMKEVVREVEKIQQVHLMSEDEDDVSCDVSLTDDSFSTRYSAPKE