AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072044

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072044.t1 MTR_2g006380 89.097 321 27 4 1 316 1 318 0.0 570
MS.gene072044.t1 MTR_2g006270 72.240 317 74 7 10 316 4 316 5.46e-156 444
MS.gene072044.t1 MTR_1g058210 48.447 322 141 10 12 316 5 318 5.32e-87 268
MS.gene072044.t1 MTR_2g024430 48.276 319 141 11 12 316 13 321 3.41e-83 260
MS.gene072044.t1 MTR_5g040880 43.849 317 161 8 10 316 2 311 7.51e-82 257
MS.gene072044.t1 MTR_5g061220 46.377 345 134 12 13 316 13 347 2.27e-81 256
MS.gene072044.t1 MTR_5g040740 46.395 319 150 10 11 316 4 314 2.49e-80 249
MS.gene072044.t1 MTR_5g060780 41.975 324 154 12 13 316 6 315 2.88e-72 229
MS.gene072044.t1 MTR_5g061890 42.284 324 153 12 13 316 6 315 2.09e-71 226
MS.gene072044.t1 MTR_5g460920 41.975 324 154 12 13 316 6 315 2.79e-71 226
MS.gene072044.t1 MTR_5g082140 44.201 319 159 10 11 316 4 316 7.88e-71 227
MS.gene072044.t1 MTR_5g060630 42.165 351 152 12 12 316 5 350 2.86e-70 227
MS.gene072044.t1 MTR_5g460740 42.165 351 152 12 12 316 5 350 2.86e-70 227
MS.gene072044.t1 MTR_3g073420 39.496 357 152 12 14 316 14 360 3.82e-69 226
MS.gene072044.t1 MTR_2g094570 33.687 377 176 13 3 316 46 411 3.50e-56 194
MS.gene072044.t1 MTR_2g094570 34.262 359 167 12 16 316 8 355 4.71e-56 192
MS.gene072044.t1 MTR_2g094570 34.262 359 167 12 16 316 8 355 4.73e-56 193
MS.gene072044.t1 MTR_5g046120 80.556 108 19 1 64 169 16 123 3.23e-55 176
MS.gene072044.t1 MTR_1g064430 32.967 364 173 11 16 316 24 379 9.43e-53 184
MS.gene072044.t1 MTR_1g064430 32.967 364 173 11 16 316 37 392 1.02e-52 184
MS.gene072044.t1 MTR_1g094960 33.803 355 167 11 19 316 19 362 3.16e-51 179
MS.gene072044.t1 MTR_5g062970 45.098 204 101 4 19 218 38 234 9.36e-49 163
MS.gene072044.t1 MTR_7g101275 36.039 308 167 11 29 315 2 300 1.57e-47 164
MS.gene072044.t1 MTR_4g058930 32.086 374 175 14 9 316 2 362 9.87e-45 162
MS.gene072044.t1 MTR_4g058930 32.086 374 175 14 9 316 2 362 1.12e-44 161
MS.gene072044.t1 MTR_0041s0120 32.609 322 171 11 29 315 2 312 1.17e-40 147
MS.gene072044.t1 MTR_4g124900 31.804 327 186 12 16 316 20 335 4.23e-36 138
MS.gene072044.t1 MTR_4g124900 31.804 327 186 12 16 316 20 335 5.20e-36 138
MS.gene072044.t1 MTR_7g101280 36.792 212 121 5 16 222 28 231 1.02e-35 136
MS.gene072044.t1 MTR_0041s0110 36.792 212 121 5 16 222 28 231 1.02e-35 136
MS.gene072044.t1 MTR_1g024025 29.846 325 196 10 16 316 40 356 7.48e-35 134
MS.gene072044.t1 MTR_5g076270 28.840 319 208 8 2 305 7 321 1.31e-33 130
MS.gene072044.t1 MTR_8g101360 30.581 327 192 11 16 316 28 345 1.73e-33 130
MS.gene072044.t1 MTR_2g018690 30.667 300 191 7 19 304 23 319 2.35e-33 130
MS.gene072044.t1 MTR_5g060770 38.095 252 105 9 73 315 9 218 3.02e-33 125
MS.gene072044.t1 MTR_3g064050 29.355 310 190 9 16 305 23 323 6.95e-33 129
MS.gene072044.t1 MTR_8g079492 30.503 318 197 9 19 316 23 336 7.17e-33 129
MS.gene072044.t1 MTR_8g079492 30.503 318 197 9 19 316 23 336 7.38e-33 129
MS.gene072044.t1 MTR_2g043250 30.864 324 193 11 16 316 20 335 7.71e-33 129
MS.gene072044.t1 MTR_4g021580 30.218 321 191 12 19 316 19 329 1.06e-32 127
MS.gene072044.t1 MTR_2g005240 29.721 323 197 11 16 316 20 334 1.19e-32 127
MS.gene072044.t1 MTR_4g021580 30.218 321 191 12 19 316 19 329 1.37e-32 127
MS.gene072044.t1 MTR_2g014770 28.205 312 185 10 19 305 53 350 2.30e-32 126
MS.gene072044.t1 MTR_8g100050 29.721 323 192 11 19 316 59 371 2.74e-32 127
MS.gene072044.t1 MTR_2g014770 28.205 312 185 10 19 305 53 350 3.17e-32 126
MS.gene072044.t1 MTR_8g100050 29.721 323 192 11 19 316 59 371 3.92e-32 126
MS.gene072044.t1 MTR_2g093740 31.611 329 188 13 19 316 56 378 5.46e-32 125
MS.gene072044.t1 MTR_2g093740 31.611 329 188 13 19 316 56 378 6.57e-32 125
MS.gene072044.t1 MTR_2g093740 31.611 329 188 13 19 316 56 378 6.76e-32 125
MS.gene072044.t1 MTR_2g093740 30.409 342 188 13 19 316 56 391 3.78e-30 120
MS.gene072044.t1 MTR_2g093740 30.409 342 188 13 19 316 56 391 4.46e-30 120
MS.gene072044.t1 MTR_2g093740 30.409 342 188 13 19 316 56 391 5.21e-30 120
MS.gene072044.t1 MTR_8g027440 28.296 311 200 9 16 311 26 328 8.37e-30 119
MS.gene072044.t1 MTR_7g062540 30.154 325 192 12 16 316 11 324 1.56e-29 119
MS.gene072044.t1 MTR_4g088210 30.033 303 170 10 14 288 33 321 3.79e-29 117
MS.gene072044.t1 MTR_4g088210 30.033 303 170 10 14 288 33 321 4.23e-29 117
MS.gene072044.t1 MTR_4g060460 31.419 296 171 10 19 290 54 341 9.25e-27 110
MS.gene072044.t1 MTR_4g060460 31.000 300 173 11 19 292 54 345 1.00e-26 110
MS.gene072044.t1 MTR_8g079492 30.588 255 154 8 82 316 3 254 1.20e-23 101
MS.gene072044.t1 MTR_2g093740 30.522 249 135 11 104 316 2 248 3.67e-18 85.5
MS.gene072044.t1 MTR_2g093740 30.522 249 135 11 104 316 2 248 3.87e-18 85.5
MS.gene072044.t1 MTR_5g460910 30.712 267 111 10 58 315 12 213 5.45e-18 83.6
MS.gene072044.t1 MTR_2g093740 30.088 226 122 9 125 316 38 261 2.37e-16 80.1
MS.gene072044.t1 MTR_2g093740 29.008 262 135 11 104 316 2 261 2.44e-16 80.1
MS.gene072044.t1 MTR_8g446900 26.316 247 156 9 72 301 13 250 2.92e-16 79.0
MS.gene072044.t1 MTR_5g062960 47.191 89 36 5 238 316 1 88 4.36e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072044.t1 AT1G77850 36.337 344 163 10 15 312 15 348 1.09e-60 203
MS.gene072044.t1 AT1G77850 36.337 344 163 10 15 312 15 348 1.34e-60 203
MS.gene072044.t1 AT4G30080 34.174 357 170 10 16 316 16 363 1.82e-53 186
MS.gene072044.t1 AT2G28350 32.527 372 173 14 11 316 2 361 2.52e-48 171
MS.gene072044.t1 AT2G28350 32.527 372 173 14 11 316 2 361 3.52e-48 171
MS.gene072044.t1 AT4G23980 30.530 321 198 9 15 316 8 322 1.09e-38 144
MS.gene072044.t1 AT4G23980 30.530 321 198 9 15 316 8 322 1.09e-38 144
MS.gene072044.t1 AT2G33860 31.804 327 182 11 19 316 54 368 1.89e-36 138
MS.gene072044.t1 AT1G35540 31.790 324 187 12 14 316 22 332 5.72e-36 137
MS.gene072044.t1 AT1G34310 31.269 323 190 11 14 316 22 332 3.09e-35 134
MS.gene072044.t1 AT1G34390 30.573 314 189 10 14 312 22 321 3.74e-35 134
MS.gene072044.t1 AT1G35520 31.210 314 189 10 14 312 22 323 8.45e-35 133
MS.gene072044.t1 AT5G37020 28.994 338 209 11 2 316 7 336 1.91e-34 133
MS.gene072044.t1 AT5G37020 28.994 338 209 11 2 316 7 336 2.30e-34 133
MS.gene072044.t1 AT5G20730 30.793 328 191 11 15 316 20 337 9.10e-34 131
MS.gene072044.t1 AT5G20730 30.793 328 191 11 15 316 20 337 9.33e-34 131
MS.gene072044.t1 AT5G20730 30.793 328 190 12 15 316 20 336 4.16e-33 129
MS.gene072044.t1 AT1G35240 30.341 323 193 11 14 316 22 332 6.17e-33 128
MS.gene072044.t1 AT2G46530 28.660 321 203 9 15 316 17 330 8.21e-33 128
MS.gene072044.t1 AT2G46530 28.660 321 203 9 15 316 38 351 9.11e-33 128
MS.gene072044.t1 AT1G30330 30.368 326 194 10 16 316 20 337 1.71e-32 127
MS.gene072044.t1 AT1G19850 29.565 345 201 11 1 316 26 357 1.77e-32 127
MS.gene072044.t1 AT1G30330 30.368 326 194 10 16 316 22 339 1.78e-32 127
MS.gene072044.t1 AT1G30330 30.368 326 194 10 16 316 22 339 1.78e-32 127
MS.gene072044.t1 AT1G19850 29.565 345 201 11 1 316 37 368 2.17e-32 127
MS.gene072044.t1 AT1G19220 29.969 327 192 12 16 316 20 335 1.09e-31 125
MS.gene072044.t1 AT1G34410 30.031 323 194 11 14 316 22 332 2.08e-31 124
MS.gene072044.t1 AT5G62000 28.528 326 198 11 16 316 58 373 4.01e-31 124
MS.gene072044.t1 AT5G62000 28.528 326 198 11 16 316 58 373 4.60e-31 123
MS.gene072044.t1 AT5G62000 28.528 326 198 11 16 316 58 373 4.60e-31 123
MS.gene072044.t1 AT5G62000 28.528 326 198 11 16 316 58 373 4.60e-31 123
MS.gene072044.t1 AT5G62000 28.528 326 198 11 16 316 58 373 4.60e-31 123
MS.gene072044.t1 AT3G61830 29.538 325 195 12 15 316 21 334 4.89e-31 123
MS.gene072044.t1 AT5G60450 29.154 319 187 11 14 304 36 343 1.24e-29 119
MS.gene072044.t1 AT5G60450 29.022 317 186 11 16 304 62 367 3.72e-29 118
MS.gene072044.t1 AT1G34170 28.438 320 192 12 14 312 20 323 1.30e-28 115
MS.gene072044.t1 AT1G59750 27.607 326 194 11 19 316 22 333 1.70e-28 115
MS.gene072044.t1 AT1G59750 27.607 326 194 11 19 316 22 333 1.75e-28 115
MS.gene072044.t1 AT1G59750 27.607 326 194 11 19 316 22 333 1.75e-28 115
MS.gene072044.t1 AT1G59750 27.607 326 194 11 19 316 22 333 1.79e-28 115
MS.gene072044.t1 AT1G34170 28.713 303 167 12 14 280 20 309 2.18e-28 114
MS.gene072044.t1 AT1G34170 28.713 303 167 12 14 280 20 309 4.73e-28 114
MS.gene072044.t1 AT1G43950 32.258 217 122 7 14 221 22 222 1.42e-27 107
MS.gene072044.t1 AT2G33860 31.776 214 120 8 125 316 2 211 5.11e-21 93.2
MS.gene072044.t1 AT3G61830 28.839 267 164 9 69 316 24 283 1.53e-20 92.4
MS.gene072044.t1 AT5G37020 30.047 213 126 8 125 316 31 241 9.18e-20 90.5
MS.gene072044.t1 AT2G46530 29.302 215 129 8 121 316 33 243 2.49e-15 76.6

Find 87 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGCAACTTTGGTATT+TGG 0.133681 2.4:+76052376 None:intergenic
TTCATCTTAACTCTCATTCT+AGG 0.234993 2.4:+76051622 None:intergenic
TATCTCGTACGTCTAATTTA+TGG 0.240815 2.4:-76051552 MS.gene072044:CDS
CTCATCATCGTCGTTGCAAT+TGG 0.314881 2.4:+76052125 None:intergenic
GTAGAGATTGTCCCTTGATA+TGG 0.324016 2.4:+76051577 None:intergenic
AACGACGATGATGAGGTAAT+TGG 0.328138 2.4:-76052117 MS.gene072044:CDS
GCTGCTGTTGGTGCTGGTGC+TGG 0.335243 2.4:+76052451 None:intergenic
GTATGCTTGCTTACATTAGT+AGG 0.336336 2.4:+76052072 None:intergenic
GCATCAACATCATTGGTTAT+TGG 0.339316 2.4:+76052174 None:intergenic
TTAACAAACGAACTCCATTC+AGG 0.339363 2.4:+76051898 None:intergenic
CGCATGTCCACCCTCAAATC+TGG 0.363208 2.4:-76052422 MS.gene072044:CDS
CAACGGGAAAATTATTTGTT+GGG 0.375166 2.4:-76051828 MS.gene072044:CDS
ATGGTTGCTGCTGTTGGTGC+TGG 0.385990 2.4:+76052445 None:intergenic
CAAATCTGGCAGACATTAAC+CGG 0.388348 2.4:-76052408 MS.gene072044:CDS
TAAACTCTTGAATGCAACTT+TGG 0.402834 2.4:+76052369 None:intergenic
TCAACGGGAAAATTATTTGT+TGG 0.404341 2.4:-76051829 MS.gene072044:CDS
CTGACGTTCATGGTGAAGTC+TGG 0.406535 2.4:-76051972 MS.gene072044:CDS
CTCCTCGTCACTGACGTTCA+TGG 0.407231 2.4:-76051982 MS.gene072044:CDS
AATGGAGTTCGTTTGTTAAG+AGG 0.407313 2.4:-76051894 MS.gene072044:CDS
TAATTTATGGCGCATGCTAC+AGG 0.422222 2.4:-76051539 MS.gene072044:CDS
TGAGTTGGAGAAGGCAGTAA+TGG 0.441158 2.4:-76051770 MS.gene072044:CDS
ACTATCCTCGAGGTGATGAT+TGG 0.444363 2.4:-76051702 MS.gene072044:CDS
GACACAGGCATCAACATCAT+TGG 0.444932 2.4:+76052167 None:intergenic
GTTAATGTCTGCCAGATTTG+AGG 0.445255 2.4:+76052411 None:intergenic
TCATCTTAACTCTCATTCTA+GGG 0.445548 2.4:+76051623 None:intergenic
GATATAAAACACGTTTCTCT+TGG 0.446560 2.4:+76051921 None:intergenic
AGGTAATTGGTTCGTTTACA+AGG 0.453827 2.4:-76052104 MS.gene072044:CDS
TGAAGACTGATAAATCTTCA+AGG 0.454632 2.4:-76051603 MS.gene072044:CDS
TGGGAACCTCATGAGGGTCT+TGG 0.457592 2.4:+76052145 None:intergenic
AATTATTTGTTGGGATTCGC+AGG 0.462606 2.4:-76051819 MS.gene072044:CDS
GGATAGTAAACAATTTCAAA+TGG 0.472676 2.4:+76051718 None:intergenic
AGTAATGGAGGCAGTGAAGT+TGG 0.472794 2.4:-76051755 MS.gene072044:CDS
TTAATGTCTGCCAGATTTGA+GGG 0.479203 2.4:+76052412 None:intergenic
ATGAATCAATGAAAATTCAA+TGG 0.482116 2.4:-76051648 MS.gene072044:CDS
GGAGTGAATGTAAGCATTGG+AGG 0.486006 2.4:+76052305 None:intergenic
TCTCTTGGCAAACCCGTGGC+AGG 0.490609 2.4:+76051936 None:intergenic
TCATCATCGTCGTTGCAATT+GGG 0.492508 2.4:+76052126 None:intergenic
GAAAATATCTTCCCTCCGCT+TGG 0.492876 2.4:-76052024 MS.gene072044:CDS
TAGAGATTGTCCCTTGATAT+GGG 0.494859 2.4:+76051578 None:intergenic
CTCATGAGGGTCTTGGACAC+AGG 0.498403 2.4:+76052152 None:intergenic
TATGCTTGCTTACATTAGTA+GGG 0.498565 2.4:+76052073 None:intergenic
TGGTATTTGGACAGCAGTGC+CGG 0.499421 2.4:+76052389 None:intergenic
TGGCAAACCCGTGGCAGGCA+TGG 0.500790 2.4:+76051941 None:intergenic
AAGTTTCACCATGCCTGCCA+CGG 0.506565 2.4:-76051949 MS.gene072044:CDS
TAACAAACGAACTCCATTCA+GGG 0.512751 2.4:+76051899 None:intergenic
TCTTCAAGGATCCCATATCA+AGG 0.512818 2.4:-76051589 MS.gene072044:CDS
ATGTAAGCATTGGAGGAGGA+AGG 0.516472 2.4:+76052312 None:intergenic
AGTTTCACCATGCCTGCCAC+GGG 0.517459 2.4:-76051948 MS.gene072044:CDS
CATGCGATGGTTGCTGCTGT+TGG 0.533873 2.4:+76052439 None:intergenic
TTGCAATTGGGAACCTCATG+AGG 0.534875 2.4:+76052138 None:intergenic
GGAGGCAGTGAAGTTGGCAG+AGG 0.547497 2.4:-76051749 MS.gene072044:CDS
TATCTTCCCTCCGCTTGGCA+TGG 0.558368 2.4:-76052019 MS.gene072044:CDS
CGCCGATCCTCACACTGATG+AGG 0.560935 2.4:-76052220 MS.gene072044:CDS
AAGGGAGTGAATGTAAGCAT+TGG 0.561164 2.4:+76052302 None:intergenic
CTGGTGCTGGTTGAGAGACA+TGG 0.567756 2.4:+76052464 None:intergenic
GCATATTCTAAGTGGCCTTG+TGG 0.574209 2.4:+76052339 None:intergenic
GTGAATGTAAGCATTGGAGG+AGG 0.588009 2.4:+76052308 None:intergenic
GTTGGAGAAGGCAGTAATGG+AGG 0.592416 2.4:-76051767 MS.gene072044:CDS
TGGGATTCGCAGGAAAGCCG+CGG 0.593939 2.4:-76051809 MS.gene072044:CDS
GGAGCAAAAGAAAGATGAGT+TGG 0.594103 2.4:-76051785 MS.gene072044:CDS
GACCTCATCAGTGTGAGGAT+CGG 0.595759 2.4:+76052218 None:intergenic
AAAGAAAGATGAGTTGGAGA+AGG 0.605720 2.4:-76051779 MS.gene072044:CDS
AAATCTCCATGCCAAGCGGA+GGG 0.609417 2.4:+76052013 None:intergenic
CTTCAAGGATCCCATATCAA+GGG 0.609531 2.4:-76051588 MS.gene072044:CDS
GAGATGATACAGATAGTGAA+AGG 0.609814 2.4:+76052258 None:intergenic
GAAATCTCCATGCCAAGCGG+AGG 0.617181 2.4:+76052012 None:intergenic
CACCATGAACGTCAGTGACG+AGG 0.617900 2.4:+76051980 None:intergenic
CGTTTCTCTTGGCAAACCCG+TGG 0.618791 2.4:+76051932 None:intergenic
AAAACGTTGAAGATCATGAA+GGG 0.620045 2.4:+76052284 None:intergenic
CACTATCTGTATCATCTCCG+CGG 0.622122 2.4:-76052253 MS.gene072044:CDS
AAGGAGAAGCATATTCTAAG+TGG 0.626940 2.4:+76052331 None:intergenic
GAAAACGTTGAAGATCATGA+AGG 0.628457 2.4:+76052283 None:intergenic
CAATTGCAACGACGATGATG+AGG 0.630770 2.4:-76052124 MS.gene072044:CDS
GAAATTGTTTACTATCCTCG+AGG 0.641156 2.4:-76051712 MS.gene072044:CDS
TGCAATTGGGAACCTCATGA+GGG 0.643730 2.4:+76052139 None:intergenic
ATTTGAGGGTGGACATGCGA+TGG 0.643879 2.4:+76052426 None:intergenic
ATGCTTGCTTACATTAGTAG+GGG 0.652528 2.4:+76052074 None:intergenic
CATGAACGTCAGTGACGAGG+AGG 0.677277 2.4:+76051983 None:intergenic
GCGAAGACCTCATCAGTGTG+AGG 0.682334 2.4:+76052213 None:intergenic
ATGTCTGCCAGATTTGAGGG+TGG 0.682807 2.4:+76052415 None:intergenic
ATCGGCGAGGAGATCAACCG+CGG 0.684227 2.4:+76052236 None:intergenic
TGAGAAATCTCCATGCCAAG+CGG 0.686661 2.4:+76052009 None:intergenic
CTGTGTCCAAGACCCTCATG+AGG 0.688345 2.4:-76052151 MS.gene072044:CDS
GATTCGCAGGAAAGCCGCGG+CGG 0.692782 2.4:-76051806 MS.gene072044:CDS
TCATGCCAATCATCACCTCG+AGG 0.713899 2.4:+76051697 None:intergenic
AAGAGGAAGAAACTCGACGT+CGG 0.718798 2.4:-76051877 MS.gene072044:CDS
CATCAGTGTGAGGATCGGCG+AGG 0.752555 2.4:+76052223 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATCAATGAAAATTCAA+TGG - chr2.4:76052348-76052367 MS.gene072044:CDS 20.0%
! GGATAGTAAACAATTTCAAA+TGG + chr2.4:76052281-76052300 None:intergenic 25.0%
!! TGTTTTCATGAAAAACTCAA+CGG - chr2.4:76052151-76052170 MS.gene072044:CDS 25.0%
AAAACGTTGAAGATCATGAA+GGG + chr2.4:76051715-76051734 None:intergenic 30.0%
CAACGGGAAAATTATTTGTT+GGG - chr2.4:76052168-76052187 MS.gene072044:CDS 30.0%
GATATAAAACACGTTTCTCT+TGG + chr2.4:76052078-76052097 None:intergenic 30.0%
TAAACTCTTGAATGCAACTT+TGG + chr2.4:76051630-76051649 None:intergenic 30.0%
TATCTCGTACGTCTAATTTA+TGG - chr2.4:76052444-76052463 MS.gene072044:CDS 30.0%
TATGCTTGCTTACATTAGTA+GGG + chr2.4:76051926-76051945 None:intergenic 30.0%
TCAACGGGAAAATTATTTGT+TGG - chr2.4:76052167-76052186 MS.gene072044:CDS 30.0%
TCATCTTAACTCTCATTCTA+GGG + chr2.4:76052376-76052395 None:intergenic 30.0%
TGAAGACTGATAAATCTTCA+AGG - chr2.4:76052393-76052412 MS.gene072044:CDS 30.0%
TTCATCTTAACTCTCATTCT+AGG + chr2.4:76052377-76052396 None:intergenic 30.0%
TTGAATGCAACTTTGGTATT+TGG + chr2.4:76051623-76051642 None:intergenic 30.0%
! AGAGTTTACTATTTTCCACA+AGG - chr2.4:76051642-76051661 MS.gene072044:CDS 30.0%
! AGCATACATTTTACATACCT+CGG - chr2.4:76051940-76051959 MS.gene072044:CDS 30.0%
! GTTTTCATGAAAAACTCAAC+GGG - chr2.4:76052152-76052171 MS.gene072044:CDS 30.0%
ATGCTTGCTTACATTAGTAG+GGG + chr2.4:76051925-76051944 None:intergenic 35.0%
GAAAACGTTGAAGATCATGA+AGG + chr2.4:76051716-76051735 None:intergenic 35.0%
GAAATTGTTTACTATCCTCG+AGG - chr2.4:76052284-76052303 MS.gene072044:CDS 35.0%
GAGATGATACAGATAGTGAA+AGG + chr2.4:76051741-76051760 None:intergenic 35.0%
GTATGCTTGCTTACATTAGT+AGG + chr2.4:76051927-76051946 None:intergenic 35.0%
TAACAAACGAACTCCATTCA+GGG + chr2.4:76052100-76052119 None:intergenic 35.0%
TAGAGATTGTCCCTTGATAT+GGG + chr2.4:76052421-76052440 None:intergenic 35.0%
TTAACAAACGAACTCCATTC+AGG + chr2.4:76052101-76052120 None:intergenic 35.0%
TTAATGTCTGCCAGATTTGA+GGG + chr2.4:76051587-76051606 None:intergenic 35.0%
! AAAGAAAGATGAGTTGGAGA+AGG - chr2.4:76052217-76052236 MS.gene072044:CDS 35.0%
! AAGGAGAAGCATATTCTAAG+TGG + chr2.4:76051668-76051687 None:intergenic 35.0%
! AATGGAGTTCGTTTGTTAAG+AGG - chr2.4:76052102-76052121 MS.gene072044:CDS 35.0%
! AATTATTTGTTGGGATTCGC+AGG - chr2.4:76052177-76052196 MS.gene072044:CDS 35.0%
! ACGTGTTTTATATCCCTGAA+TGG - chr2.4:76052084-76052103 MS.gene072044:CDS 35.0%
! ATATTTTCAGCACAAAACCG+AGG + chr2.4:76051960-76051979 None:intergenic 35.0%
! GCATCAACATCATTGGTTAT+TGG + chr2.4:76051825-76051844 None:intergenic 35.0%
! TGATTGGCATGATTTTGTAG+TGG - chr2.4:76052310-76052329 MS.gene072044:CDS 35.0%
!! AGGTAATTGGTTCGTTTACA+AGG - chr2.4:76051892-76051911 MS.gene072044:CDS 35.0%
AACGACGATGATGAGGTAAT+TGG - chr2.4:76051879-76051898 MS.gene072044:CDS 40.0%
AAGGGAGTGAATGTAAGCAT+TGG + chr2.4:76051697-76051716 None:intergenic 40.0%
CAAATCTGGCAGACATTAAC+CGG - chr2.4:76051588-76051607 MS.gene072044:CDS 40.0%
CTTCAAGGATCCCATATCAA+GGG - chr2.4:76052408-76052427 MS.gene072044:CDS 40.0%
GGAGCAAAAGAAAGATGAGT+TGG - chr2.4:76052211-76052230 MS.gene072044:CDS 40.0%
GTAGAGATTGTCCCTTGATA+TGG + chr2.4:76052422-76052441 None:intergenic 40.0%
GTTAATGTCTGCCAGATTTG+AGG + chr2.4:76051588-76051607 None:intergenic 40.0%
TAATTTATGGCGCATGCTAC+AGG - chr2.4:76052457-76052476 MS.gene072044:CDS 40.0%
TCATCATCGTCGTTGCAATT+GGG + chr2.4:76051873-76051892 None:intergenic 40.0%
TCTTCAAGGATCCCATATCA+AGG - chr2.4:76052407-76052426 MS.gene072044:CDS 40.0%
AAGAGGAAGAAACTCGACGT+CGG - chr2.4:76052119-76052138 MS.gene072044:CDS 45.0%
ACTATCCTCGAGGTGATGAT+TGG - chr2.4:76052294-76052313 MS.gene072044:CDS 45.0%
CAATTGCAACGACGATGATG+AGG - chr2.4:76051872-76051891 MS.gene072044:CDS 45.0%
CACTATCTGTATCATCTCCG+CGG - chr2.4:76051743-76051762 MS.gene072044:CDS 45.0%
CTCATCATCGTCGTTGCAAT+TGG + chr2.4:76051874-76051893 None:intergenic 45.0%
GAAAATATCTTCCCTCCGCT+TGG - chr2.4:76051972-76051991 MS.gene072044:CDS 45.0%
GACACAGGCATCAACATCAT+TGG + chr2.4:76051832-76051851 None:intergenic 45.0%
TGAGAAATCTCCATGCCAAG+CGG + chr2.4:76051990-76052009 None:intergenic 45.0%
TGCAATTGGGAACCTCATGA+GGG + chr2.4:76051860-76051879 None:intergenic 45.0%
TTGCAATTGGGAACCTCATG+AGG + chr2.4:76051861-76051880 None:intergenic 45.0%
! AGTAATGGAGGCAGTGAAGT+TGG - chr2.4:76052241-76052260 MS.gene072044:CDS 45.0%
! GCATATTCTAAGTGGCCTTG+TGG + chr2.4:76051660-76051679 None:intergenic 45.0%
! TGAGTTGGAGAAGGCAGTAA+TGG - chr2.4:76052226-76052245 MS.gene072044:CDS 45.0%
!! ATGTAAGCATTGGAGGAGGA+AGG + chr2.4:76051687-76051706 None:intergenic 45.0%
!! GGAGTGAATGTAAGCATTGG+AGG + chr2.4:76051694-76051713 None:intergenic 45.0%
!! GTGAATGTAAGCATTGGAGG+AGG + chr2.4:76051691-76051710 None:intergenic 45.0%
AAATCTCCATGCCAAGCGGA+GGG + chr2.4:76051986-76052005 None:intergenic 50.0%
AAGTTTCACCATGCCTGCCA+CGG - chr2.4:76052047-76052066 MS.gene072044:CDS 50.0%
ATGTCTGCCAGATTTGAGGG+TGG + chr2.4:76051584-76051603 None:intergenic 50.0%
ATTTGAGGGTGGACATGCGA+TGG + chr2.4:76051573-76051592 None:intergenic 50.0%
CTGACGTTCATGGTGAAGTC+TGG - chr2.4:76052024-76052043 MS.gene072044:CDS 50.0%
GACCTCATCAGTGTGAGGAT+CGG + chr2.4:76051781-76051800 None:intergenic 50.0%
GTTGGAGAAGGCAGTAATGG+AGG - chr2.4:76052229-76052248 MS.gene072044:CDS 50.0%
TCATGCCAATCATCACCTCG+AGG + chr2.4:76052302-76052321 None:intergenic 50.0%
TGGTATTTGGACAGCAGTGC+CGG + chr2.4:76051610-76051629 None:intergenic 50.0%
! ATCTTTCTTTTGCTCCGCCG+CGG + chr2.4:76052207-76052226 None:intergenic 50.0%
AGTTTCACCATGCCTGCCAC+GGG - chr2.4:76052048-76052067 MS.gene072044:CDS 55.0%
ATGGTTGCTGCTGTTGGTGC+TGG + chr2.4:76051554-76051573 None:intergenic 55.0%
CACCATGAACGTCAGTGACG+AGG + chr2.4:76052019-76052038 None:intergenic 55.0%
CATGAACGTCAGTGACGAGG+AGG + chr2.4:76052016-76052035 None:intergenic 55.0%
CATGCGATGGTTGCTGCTGT+TGG + chr2.4:76051560-76051579 None:intergenic 55.0%
CGCATGTCCACCCTCAAATC+TGG - chr2.4:76051574-76051593 MS.gene072044:CDS 55.0%
CGTTTCTCTTGGCAAACCCG+TGG + chr2.4:76052067-76052086 None:intergenic 55.0%
CTCATGAGGGTCTTGGACAC+AGG + chr2.4:76051847-76051866 None:intergenic 55.0%
CTCCTCGTCACTGACGTTCA+TGG - chr2.4:76052014-76052033 MS.gene072044:CDS 55.0%
CTGTGTCCAAGACCCTCATG+AGG - chr2.4:76051845-76051864 MS.gene072044:CDS 55.0%
GAAATCTCCATGCCAAGCGG+AGG + chr2.4:76051987-76052006 None:intergenic 55.0%
GCGAAGACCTCATCAGTGTG+AGG + chr2.4:76051786-76051805 None:intergenic 55.0%
TATCTTCCCTCCGCTTGGCA+TGG - chr2.4:76051977-76051996 MS.gene072044:CDS 55.0%
TGGGAACCTCATGAGGGTCT+TGG + chr2.4:76051854-76051873 None:intergenic 55.0%
ATCGGCGAGGAGATCAACCG+CGG + chr2.4:76051763-76051782 None:intergenic 60.0%
CATCAGTGTGAGGATCGGCG+AGG + chr2.4:76051776-76051795 None:intergenic 60.0%
CGCCGATCCTCACACTGATG+AGG - chr2.4:76051776-76051795 MS.gene072044:CDS 60.0%
GGAGGCAGTGAAGTTGGCAG+AGG - chr2.4:76052247-76052266 MS.gene072044:CDS 60.0%
TCTCTTGGCAAACCCGTGGC+AGG + chr2.4:76052063-76052082 None:intergenic 60.0%
TGGGATTCGCAGGAAAGCCG+CGG - chr2.4:76052187-76052206 MS.gene072044:CDS 60.0%
GATTCGCAGGAAAGCCGCGG+CGG - chr2.4:76052190-76052209 MS.gene072044:CDS 65.0%
TGGCAAACCCGTGGCAGGCA+TGG + chr2.4:76052058-76052077 None:intergenic 65.0%
!! GCTGCTGTTGGTGCTGGTGC+TGG + chr2.4:76051548-76051567 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 76051534 76052484 76051534 ID=MS.gene072044
chr2.4 mRNA 76051534 76052484 76051534 ID=MS.gene072044.t1;Parent=MS.gene072044
chr2.4 exon 76051534 76052484 76051534 ID=MS.gene072044.t1.exon1;Parent=MS.gene072044.t1
chr2.4 CDS 76051534 76052484 76051534 ID=cds.MS.gene072044.t1;Parent=MS.gene072044.t1
Gene Sequence

>MS.gene072044

ATGTCTCTCAACCAGCACCAGCACCAACAGCAGCAACCATCGCATGTCCACCCTCAAATCTGGCAGACATTAACCGGCACTGCTGTCCAAATACCAAAGTTGCATTCAAGAGTTTACTATTTTCCACAAGGCCACTTAGAATATGCTTCTCCTTCCTCCTCCAATGCTTACATTCACTCCCTTCATGATCTTCAACGTTTTCGTCCTTTCACTATCTGTATCATCTCCGCGGTTGATCTCCTCGCCGATCCTCACACTGATGAGGTCTTCGCTAAACTGCTACTCACTCCAATAACCAATGATGTTGATGCCTGTGTCCAAGACCCTCATGAGGTTCCCAATTGCAACGACGATGATGAGGTAATTGGTTCGTTTACAAGGACTCTCGCCCCTACTAATGTAAGCAAGCATACATTTTACATACCTCGGTTTTGTGCTGAAAATATCTTCCCTCCGCTTGGCATGGAGATTTCTCAAAACCTCCTCGTCACTGACGTTCATGGTGAAGTCTGGAAGTTTCACCATGCCTGCCACGGGTTTGCCAAGAGAAACGTGTTTTATATCCCTGAATGGAGTTCGTTTGTTAAGAGGAAGAAACTCGACGTCGGAGATGCTGTTGTTTTCATGAAAAACTCAACGGGAAAATTATTTGTTGGGATTCGCAGGAAAGCCGCGGCGGAGCAAAAGAAAGATGAGTTGGAGAAGGCAGTAATGGAGGCAGTGAAGTTGGCAGAGGAGAACAAGCCATTTGAAATTGTTTACTATCCTCGAGGTGATGATTGGCATGATTTTGTAGTGGATGCTAATATTGTTGATGAATCAATGAAAATTCAATGGAACCCTAGAATGAGAGTTAAGATGAAGACTGATAAATCTTCAAGGATCCCATATCAAGGGACAATCTCTACTGTATCTCGTACGTCTAATTTATGGCGCATGCTACAGGTATAA
Protein sequence

>MS.gene072044.t1

MSLNQHQHQQQQPSHVHPQIWQTLTGTAVQIPKLHSRVYYFPQGHLEYASPSSSNAYIHSLHDLQRFRPFTICIISAVDLLADPHTDEVFAKLLLTPITNDVDACVQDPHEVPNCNDDDEVIGSFTRTLAPTNVSKHTFYIPRFCAENIFPPLGMEISQNLLVTDVHGEVWKFHHACHGFAKRNVFYIPEWSSFVKRKKLDVGDAVVFMKNSTGKLFVGIRRKAAAEQKKDELEKAVMEAVKLAEENKPFEIVYYPRGDDWHDFVVDANIVDESMKIQWNPRMRVKMKTDKSSRIPYQGTISTVSRTSNLWRMLQV