AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072348

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072348.t1 MTR_1g093095 75.000 172 40 1 174 342 99 270 1.99e-97 291
MS.gene072348.t1 MTR_4g059870 33.540 161 90 5 184 343 61 205 5.17e-21 94.4
MS.gene072348.t1 MTR_1g016010 34.146 164 89 6 182 343 62 208 5.48e-21 94.0
MS.gene072348.t1 MTR_1g094115 35.526 152 78 7 187 336 56 189 1.46e-20 92.8
MS.gene072348.t1 MTR_1g094115 33.951 162 87 7 177 336 63 206 1.52e-20 92.8
MS.gene072348.t1 MTR_1g112270 33.540 161 89 6 177 336 60 203 1.97e-20 92.8
MS.gene072348.t1 MTR_1g112270 33.540 161 89 6 177 336 71 214 2.03e-20 92.8
MS.gene072348.t1 MTR_8g017210 33.333 159 86 6 184 340 85 225 3.01e-20 92.0
MS.gene072348.t1 MTR_2g099990 32.716 162 89 6 177 336 62 205 4.88e-20 91.3
MS.gene072348.t1 MTR_2g090745 34.091 176 96 8 163 336 9 166 1.25e-19 89.7
MS.gene072348.t1 MTR_2g093960 35.971 139 80 4 184 321 55 185 1.44e-19 89.4
MS.gene072348.t1 MTR_2g099990 33.117 154 83 6 185 336 1 136 5.03e-19 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072348.t1 AT3G57670 61.818 385 96 8 4 348 3 376 8.09e-142 407
MS.gene072348.t1 AT1G51220 54.722 360 125 8 1 345 1 337 1.31e-124 361
MS.gene072348.t1 AT3G20880 56.923 325 107 8 45 345 95 410 1.77e-119 351
MS.gene072348.t1 AT1G13290 68.868 212 40 4 119 328 54 241 1.04e-102 305
MS.gene072348.t1 AT1G34790 64.159 226 72 1 119 344 83 299 3.69e-101 300
MS.gene072348.t1 AT1G08290 75.148 169 38 2 174 338 164 332 3.01e-96 289
MS.gene072348.t1 AT1G34370 38.816 152 81 5 184 326 28 176 2.91e-26 106
MS.gene072348.t1 AT1G34370 38.816 152 81 5 184 326 238 386 8.35e-26 108
MS.gene072348.t1 AT1G34370 38.816 152 81 5 184 326 238 386 8.35e-26 108
MS.gene072348.t1 AT5G22890 39.744 156 81 6 184 329 211 363 1.51e-23 100
MS.gene072348.t1 AT5G03150 33.333 165 93 5 184 347 76 224 6.04e-22 97.1
MS.gene072348.t1 AT1G55110 35.404 161 85 6 182 340 84 227 1.48e-21 95.5
MS.gene072348.t1 AT1G55110 35.404 161 85 6 182 340 84 227 1.48e-21 95.5
MS.gene072348.t1 AT1G55110 35.404 161 85 6 182 340 84 227 1.48e-21 95.5
MS.gene072348.t1 AT2G02070 33.540 161 89 5 177 336 68 211 1.85e-20 92.8
MS.gene072348.t1 AT2G02070 33.540 161 89 5 177 336 68 211 1.85e-20 92.8
MS.gene072348.t1 AT2G02080 33.974 156 85 5 182 336 75 213 3.02e-20 92.0
MS.gene072348.t1 AT2G02080 33.974 156 85 5 182 336 75 213 3.02e-20 92.0
MS.gene072348.t1 AT2G02080 33.974 156 85 5 182 336 75 213 3.02e-20 92.0
MS.gene072348.t1 AT2G02080 33.974 156 85 5 182 336 75 213 3.02e-20 92.0
MS.gene072348.t1 AT5G66730 35.032 157 82 7 182 336 53 191 3.07e-20 92.0
MS.gene072348.t1 AT1G14580 33.951 162 87 6 177 336 69 212 9.12e-20 90.5
MS.gene072348.t1 AT1G14580 33.951 162 87 6 177 336 69 212 9.12e-20 90.5
MS.gene072348.t1 AT1G14580 33.951 162 87 6 177 336 83 226 9.82e-20 90.5
MS.gene072348.t1 AT2G02080 34.641 153 82 5 185 336 1 136 1.65e-19 89.4
MS.gene072348.t1 AT2G02080 34.641 153 82 5 185 336 1 136 1.65e-19 89.4
MS.gene072348.t1 AT3G45260 35.065 154 83 5 184 336 62 199 2.98e-19 89.0
MS.gene072348.t1 AT3G45260 35.065 154 83 5 184 336 62 199 2.98e-19 89.0
MS.gene072348.t1 AT5G44160 31.515 165 95 5 184 347 21 168 1.13e-18 87.0
MS.gene072348.t1 AT5G60470 33.117 154 86 5 184 336 58 195 1.20e-18 87.0
MS.gene072348.t1 AT5G44160 31.515 165 95 5 184 347 60 207 1.31e-18 87.0
MS.gene072348.t1 AT5G60470 33.117 154 86 5 184 336 63 200 1.39e-18 87.0
MS.gene072348.t1 AT5G60470 33.117 154 86 5 184 336 67 204 1.40e-18 87.0
MS.gene072348.t1 AT4G02670 32.298 161 92 4 177 336 69 213 1.76e-18 86.3
MS.gene072348.t1 AT4G02670 32.298 161 92 4 177 336 71 215 1.89e-18 86.3
MS.gene072348.t1 AT3G50700 32.484 157 88 5 182 337 55 194 1.95e-18 86.3
MS.gene072348.t1 AT1G03840 32.298 161 91 6 177 336 55 198 3.31e-18 85.9
MS.gene072348.t1 AT1G03840 31.056 161 93 5 177 336 57 200 3.52e-18 85.9
MS.gene072348.t1 AT3G13810 31.677 161 93 5 177 336 81 225 1.33e-17 84.3
MS.gene072348.t1 AT3G13810 31.677 161 93 5 177 336 86 230 1.37e-17 84.3
MS.gene072348.t1 AT3G13810 31.677 161 93 5 177 336 86 230 1.37e-17 84.3
MS.gene072348.t1 AT3G13810 31.677 161 93 5 177 336 87 231 1.45e-17 84.0
MS.gene072348.t1 AT3G13810 31.677 161 93 5 177 336 67 211 1.54e-17 84.0
MS.gene072348.t1 AT3G13810 31.677 161 93 5 177 336 73 217 1.69e-17 84.0
MS.gene072348.t1 AT1G25250 29.496 139 88 5 182 317 54 185 1.78e-13 71.2
MS.gene072348.t1 AT1G25250 29.496 139 88 5 182 317 31 162 2.08e-13 70.9
MS.gene072348.t1 AT1G68130 30.935 139 85 5 182 317 62 192 3.79e-13 70.5

Find 72 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGATTCATGGTTAATAAT+AGG 0.242177 7.2:+16840140 MS.gene072348:CDS
AAAGATCATATCAAAGCTTT+TGG 0.279015 7.2:+16842058 MS.gene072348:CDS
TGTGTGCCTCTTAGAGATTC+AGG 0.280812 7.2:-16841773 None:intergenic
GGAAGTGGACATGCTGCTTA+TGG 0.286552 7.2:+16842079 MS.gene072348:CDS
GTTGGTGAGGATTCTTGTTC+AGG 0.320459 7.2:+16840121 MS.gene072348:CDS
AAAAGAATTGTGGGAAGCTT+TGG 0.349652 7.2:+16841993 MS.gene072348:CDS
GAAGAGAAAAGATTAGAGTA+AGG 0.352738 7.2:-16839668 None:intergenic
GGATTCTTGTTCAGGATTCA+TGG 0.360583 7.2:+16840129 MS.gene072348:CDS
ATGATGATGATAGTGGAAAA+AGG 0.364911 7.2:-16839798 None:intergenic
AAACCCTAGTGCTGCTGAAA+TGG 0.370039 7.2:+16840039 MS.gene072348:CDS
GGCTTAACAAAGGACAATAT+TGG 0.383450 7.2:+16840161 MS.gene072348:CDS
CCTTGTTACTGTTGTGCACC+AGG 0.388233 7.2:+16841818 MS.gene072348:CDS
AGAGGTAGTTCTTCTCTTAG+AGG 0.403255 7.2:-16839848 None:intergenic
ACTCCTTCTCAGATTCTCAT+TGG 0.410986 7.2:+16840190 MS.gene072348:CDS
TCTTTGAGAGGCTTTGCTCT+TGG 0.418075 7.2:-16841863 None:intergenic
GAAGTGGACATGCTGCTTAT+GGG 0.418215 7.2:+16842080 MS.gene072348:CDS
ATTTCAGCAGCACTAGGGTT+TGG 0.419339 7.2:-16840037 None:intergenic
GATCTCTGAGGAGTTATTAG+AGG 0.433036 7.2:-16840077 None:intergenic
GAAGGGTTTGAATTTGAAGA+TGG 0.443053 7.2:-16839725 None:intergenic
AGGAAATATGATGATGATAG+TGG 0.447261 7.2:-16839805 None:intergenic
TTCCCTTTCTTCTAAATCCA+TGG 0.448360 7.2:-16839957 None:intergenic
AGACCTTCCTTGCACTGCCA+TGG 0.468218 7.2:+16839940 MS.gene072348:CDS
TGCCATGGATTTAGAAGAAA+GGG 0.480220 7.2:+16839955 MS.gene072348:CDS
TCTTGCTCTACTTCAGAAGC+TGG 0.480582 7.2:-16842130 None:intergenic
AGGAGAAGGTGGTGAAGAAG+AGG 0.481051 7.2:-16839825 None:intergenic
CTAAGAGGCACACAACCAAC+AGG 0.487480 7.2:+16841782 MS.gene072348:CDS
TTGTTGTGGTGGTGAAGAAA+AGG 0.494029 7.2:-16839764 None:intergenic
GAAGCCATTTCAGCAGCACT+AGG 0.500052 7.2:-16840043 None:intergenic
TCTTCTCTTAGAGGAGGAGA+AGG 0.501187 7.2:-16839839 None:intergenic
AAGAGAAAAGATTAGAGTAA+GGG 0.501589 7.2:-16839667 None:intergenic
GAACTCATGAAAAGAATTGT+GGG 0.503233 7.2:+16841984 MS.gene072348:CDS
AGAACTCATGAAAAGAATTG+TGG 0.519976 7.2:+16841983 MS.gene072348:CDS
TTAGAAGAAAGGGAAGAAGA+TGG 0.524706 7.2:+16839965 MS.gene072348:CDS
GTTACTGTTGCACTTCACAT+AGG 0.528079 7.2:+16840010 MS.gene072348:CDS
ATGAGAATCTGAGAAGGAGT+AGG 0.530035 7.2:-16840187 None:intergenic
TGTTGTGGTGGTGAAGAAAA+GGG 0.533983 7.2:-16839763 None:intergenic
CATGCTGCTTATGGGTGTGA+TGG 0.534441 7.2:+16842088 MS.gene072348:CDS
GTTGGAATTAGGCTTAAAAG+AGG 0.534675 7.2:-16839866 None:intergenic
CATGGATCACAGTACAGAAA+AGG 0.538411 7.2:+16841749 MS.gene072348:CDS
CTGCCATGGATTTAGAAGAA+AGG 0.539425 7.2:+16839954 MS.gene072348:CDS
AATCCATGGCAGTGCAAGGA+AGG 0.544023 7.2:-16839943 None:intergenic
AGGTATGGTTATTGTTGTTG+TGG 0.546230 7.2:-16839778 None:intergenic
GGTGGTGAAGAAAAGGGTGG+TGG 0.550176 7.2:-16839757 None:intergenic
TATGGTTATTGTTGTTGTGG+TGG 0.558394 7.2:-16839775 None:intergenic
AAGCTTTGGTATTGTATCTG+TGG 0.559395 7.2:+16842007 MS.gene072348:CDS
ACACATTACAAGAGGAAACA+TGG 0.569309 7.2:+16841902 MS.gene072348:CDS
ACAGGGCAAGAAAACTGAGT+TGG 0.573007 7.2:-16840214 None:intergenic
TGAGAATCTGAGAAGGAGTA+GGG 0.575360 7.2:-16840186 None:intergenic
AAAGGTCCTGAATCTCTAAG+AGG 0.580235 7.2:+16841767 MS.gene072348:CDS
AGTGTTCTAAAATCTTTGAG+AGG 0.584894 7.2:-16841875 None:intergenic
CTTGTTACTGTTGTGCACCA+GGG 0.585436 7.2:+16841819 MS.gene072348:CDS
AGAGTAAGGGTTATCAGCCA+TGG 0.585920 7.2:-16839654 None:intergenic
TCTCTTAGAGGAGGAGAAGG+TGG 0.585932 7.2:-16839836 None:intergenic
GGTAGTTCTTCTCTTAGAGG+AGG 0.595867 7.2:-16839845 None:intergenic
CACTTCAAACACATTACAAG+AGG 0.601250 7.2:+16841894 MS.gene072348:CDS
AAGCCATTTCAGCAGCACTA+GGG 0.602433 7.2:-16840042 None:intergenic
TCTAAATCCATGGCAGTGCA+AGG 0.604858 7.2:-16839947 None:intergenic
GGTAGCCTTAGCATTCCTGT+TGG 0.607467 7.2:-16841797 None:intergenic
TCAATGTTGTTTCTGCACCC+TGG 0.610178 7.2:-16841836 None:intergenic
CACAACCAACAGGAATGCTA+AGG 0.612992 7.2:+16841792 MS.gene072348:CDS
ATCACTGATAAAGAACATGT+TGG 0.619011 7.2:+16840103 MS.gene072348:CDS
CAATAGATATAACAACATGC+AGG 0.621278 7.2:+16840252 MS.gene072348:CDS
GGACCAATGAGAATCTGAGA+AGG 0.626496 7.2:-16840193 None:intergenic
GTTAATAATAGGCTTAACAA+AGG 0.627528 7.2:+16840151 MS.gene072348:CDS
TGATAAAGAACATGTTGGTG+AGG 0.633314 7.2:+16840108 MS.gene072348:CDS
AGATCAACAAGAACATGAGG+TGG 0.635764 7.2:+16839910 MS.gene072348:CDS
CATGTGTAGAAAATGTAGCA+AGG 0.640710 7.2:+16841937 MS.gene072348:CDS
CCTGGTGCACAACAGTAACA+AGG 0.646997 7.2:-16841818 None:intergenic
TGAAGATCAACAAGAACATG+AGG 0.648021 7.2:+16839907 MS.gene072348:CDS
GTGTGATGGATTTGAAGAAG+AGG 0.666362 7.2:+16842102 MS.gene072348:CDS
TGTGGTGGTGAAGAAAAGGG+TGG 0.675317 7.2:-16839760 None:intergenic
ATCAGTGATAGTGATCTCTG+AGG 0.722446 7.2:-16840089 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAATTGATTACTA+AGG - chr7.2:16841395-16841414 None:intergenic 10.0%
!! AAAATAAAATTGATTACTAA+GGG - chr7.2:16841394-16841413 None:intergenic 10.0%
!!! TATTTTTAAAATTACAGTTT+TGG + chr7.2:16841262-16841281 MS.gene072348:intron 10.0%
!! ATAGCATATATTAATTTCAT+TGG + chr7.2:16840667-16840686 MS.gene072348:intron 15.0%
!!! TTTTAAACCTTGAATTATAA+AGG - chr7.2:16840358-16840377 None:intergenic 15.0%
!! AAAAAATTTCTGTTCTATAC+AGG - chr7.2:16840924-16840943 None:intergenic 20.0%
!! AATTTGAAGATGGAAAAATA+TGG - chr7.2:16839718-16839737 None:intergenic 20.0%
!! ATTAAACTATGGAAAAAAGA+AGG - chr7.2:16841051-16841070 None:intergenic 20.0%
!! TATTAATGAACAATCATGAA+GGG - chr7.2:16841500-16841519 None:intergenic 20.0%
!! TTATTAATGAACAATCATGA+AGG - chr7.2:16841501-16841520 None:intergenic 20.0%
!! TTTCAAAAACTATTTCAAAC+AGG + chr7.2:16841368-16841387 MS.gene072348:intron 20.0%
!!! AAAAACTAAAGAAGAGTTTT+TGG - chr7.2:16841223-16841242 None:intergenic 20.0%
!!! ATTTATTTTAATGATCGATC+TGG - chr7.2:16840958-16840977 None:intergenic 20.0%
!!! GTCTTCAATTTTTTAGTTTT+GGG + chr7.2:16841290-16841309 MS.gene072348:intron 20.0%
!!! TCATATTTTTCTTGTTTTGT+TGG - chr7.2:16839887-16839906 None:intergenic 20.0%
!!! TGTCTTCAATTTTTTAGTTT+TGG + chr7.2:16841289-16841308 MS.gene072348:intron 20.0%
! AAGAAAGTTATTGACAGAAA+AGG - chr7.2:16840426-16840445 None:intergenic 25.0%
! AAGAGAAAAGATTAGAGTAA+GGG - chr7.2:16839670-16839689 None:intergenic 25.0%
! ACAGATTTCAATGTAGTAAA+AGG - chr7.2:16840877-16840896 None:intergenic 25.0%
! AGAAAGTTATTGACAGAAAA+GGG - chr7.2:16840425-16840444 None:intergenic 25.0%
! AGTTTAGTCAATCAAAGAAA+AGG - chr7.2:16840833-16840852 None:intergenic 25.0%
! ATGGAAAAATATGGTTGAAT+TGG - chr7.2:16839709-16839728 None:intergenic 25.0%
! CAAAAAGAAAGAAATGAAAG+AGG - chr7.2:16840537-16840556 None:intergenic 25.0%
! CATTTAGAGATAGAAAAATG+TGG + chr7.2:16841146-16841165 MS.gene072348:intron 25.0%
! GTTAATAATAGGCTTAACAA+AGG + chr7.2:16840151-16840170 MS.gene072348:CDS 25.0%
! TAAAAAATTGTTCCTCTTTG+TGG + chr7.2:16840981-16841000 MS.gene072348:intron 25.0%
!! AAAGATCATATCAAAGCTTT+TGG + chr7.2:16842058-16842077 MS.gene072348:CDS 25.0%
!! GTTTTTATAGATGCATATGT+GGG + chr7.2:16841724-16841743 MS.gene072348:intron 25.0%
!! TACAAGTCTTCTTTTTACAA+TGG - chr7.2:16841346-16841365 None:intergenic 25.0%
!! TTCAGTAGATCTTGATAATA+AGG - chr7.2:16841571-16841590 None:intergenic 25.0%
!! TTCTGAAGAAAGAAAAAAGA+AGG - chr7.2:16840621-16840640 None:intergenic 25.0%
!! TTTTTATAGATGCATATGTG+GGG + chr7.2:16841725-16841744 MS.gene072348:intron 25.0%
!!! TGTTTTTATAGATGCATATG+TGG + chr7.2:16841723-16841742 MS.gene072348:intron 25.0%
!!! TTTCTTGTTTTGTTGGAATT+AGG - chr7.2:16839880-16839899 None:intergenic 25.0%
AAAAAGAAGGCAAATTTGGA+TGG - chr7.2:16841038-16841057 None:intergenic 30.0%
AAATTTCTGTTCTATACAGG+TGG - chr7.2:16840921-16840940 None:intergenic 30.0%
AATTTCTGTTCTATACAGGT+GGG - chr7.2:16840920-16840939 None:intergenic 30.0%
AGAACTCATGAAAAGAATTG+TGG + chr7.2:16841983-16842002 MS.gene072348:CDS 30.0%
AGTCAATCAAAGAAAAGGAA+AGG - chr7.2:16840828-16840847 None:intergenic 30.0%
ATCACTGATAAAGAACATGT+TGG + chr7.2:16840103-16840122 MS.gene072348:CDS 30.0%
ATTCATATATACTGAGAGAC+TGG + chr7.2:16840784-16840803 MS.gene072348:intron 30.0%
ATTTGGATGGTATATTAGCA+TGG - chr7.2:16841025-16841044 None:intergenic 30.0%
CAATAGATATAACAACATGC+AGG + chr7.2:16840252-16840271 MS.gene072348:CDS 30.0%
CACACTTCCTTTATAATTCA+AGG + chr7.2:16840348-16840367 MS.gene072348:intron 30.0%
CAGGATTCATGGTTAATAAT+AGG + chr7.2:16840140-16840159 MS.gene072348:CDS 30.0%
GAAAGAAAAAAGAAGGAAAG+AGG - chr7.2:16840614-16840633 None:intergenic 30.0%
GAACTCATGAAAAGAATTGT+GGG + chr7.2:16841984-16842003 MS.gene072348:CDS 30.0%
GAAGAGAAAAGATTAGAGTA+AGG - chr7.2:16839671-16839690 None:intergenic 30.0%
TCTCTCAGTATATATGAATC+AGG - chr7.2:16840783-16840802 None:intergenic 30.0%
TGAAACAAAACAGAAGAACA+AGG - chr7.2:16840323-16840342 None:intergenic 30.0%
TGAAGGGCAAAGATTTAATT+TGG - chr7.2:16841484-16841503 None:intergenic 30.0%
TGGAAAAAAGAAGGCAAATT+TGG - chr7.2:16841042-16841061 None:intergenic 30.0%
TTCATATATACTGAGAGACT+GGG + chr7.2:16840785-16840804 MS.gene072348:intron 30.0%
! AGCTAGTGTTAAATTTTGCA+TGG + chr7.2:16840726-16840745 MS.gene072348:intron 30.0%
! AGGAAATATGATGATGATAG+TGG - chr7.2:16839808-16839827 None:intergenic 30.0%
! CTACATTTTCTACACATGAA+TGG - chr7.2:16841935-16841954 None:intergenic 30.0%
! GTAGATCTTGATAATAAGGT+CGG - chr7.2:16841567-16841586 None:intergenic 30.0%
! GTTCTGATTTTAAACACAAG+AGG + chr7.2:16842029-16842048 MS.gene072348:CDS 30.0%
! TCAATGTAGTAAAAGGCATA+AGG - chr7.2:16840870-16840889 None:intergenic 30.0%
! TCCTTGATTTGAACCATTAA+CGG + chr7.2:16840445-16840464 MS.gene072348:intron 30.0%
! TTTTATAGATGCATATGTGG+GGG + chr7.2:16841726-16841745 MS.gene072348:intron 30.0%
!! AGTGTTCTAAAATCTTTGAG+AGG - chr7.2:16841878-16841897 None:intergenic 30.0%
!! ATGATGATGATAGTGGAAAA+AGG - chr7.2:16839801-16839820 None:intergenic 30.0%
!!! TGAAAGTTTTAGAGCAAACA+GGG - chr7.2:16840234-16840253 None:intergenic 30.0%
!!! TTGAAAGTTTTAGAGCAAAC+AGG - chr7.2:16840235-16840254 None:intergenic 30.0%
!!! TTTTGGAAAGTGTTTCAAAC+AGG - chr7.2:16841206-16841225 None:intergenic 30.0%
AAAAAGAAGGAAAGAGGTCA+AGG - chr7.2:16840608-16840627 None:intergenic 35.0%
AAAAGAATTGTGGGAAGCTT+TGG + chr7.2:16841993-16842012 MS.gene072348:CDS 35.0%
AAACAGAAGAACAAGGTCTT+TGG - chr7.2:16840316-16840335 None:intergenic 35.0%
ACACATTACAAGAGGAAACA+TGG + chr7.2:16841902-16841921 MS.gene072348:CDS 35.0%
ACCGTTAATGGTTCAAATCA+AGG - chr7.2:16840449-16840468 None:intergenic 35.0%
CACTTCAAACACATTACAAG+AGG + chr7.2:16841894-16841913 MS.gene072348:CDS 35.0%
CATGTGTAGAAAATGTAGCA+AGG + chr7.2:16841937-16841956 MS.gene072348:CDS 35.0%
GAAGGGTTTGAATTTGAAGA+TGG - chr7.2:16839728-16839747 None:intergenic 35.0%
GGCTTAACAAAGGACAATAT+TGG + chr7.2:16840161-16840180 MS.gene072348:CDS 35.0%
GTATATTAGCATGGTTGGAT+TGG - chr7.2:16841016-16841035 None:intergenic 35.0%
GTTGGAATTAGGCTTAAAAG+AGG - chr7.2:16839869-16839888 None:intergenic 35.0%
TGAAGATCAACAAGAACATG+AGG + chr7.2:16839907-16839926 MS.gene072348:CDS 35.0%
TGATAAAGAACATGTTGGTG+AGG + chr7.2:16840108-16840127 MS.gene072348:CDS 35.0%
TGCCATGGATTTAGAAGAAA+GGG + chr7.2:16839955-16839974 MS.gene072348:CDS 35.0%
TTAGAAGAAAGGGAAGAAGA+TGG + chr7.2:16839965-16839984 MS.gene072348:CDS 35.0%
TTCCCTTTCTTCTAAATCCA+TGG - chr7.2:16839960-16839979 None:intergenic 35.0%
! AAGCTTTGGTATTGTATCTG+TGG + chr7.2:16842007-16842026 MS.gene072348:CDS 35.0%
! AGAAAAGGAAAGGTGTAGTA+AGG - chr7.2:16840818-16840837 None:intergenic 35.0%
! AGGTATGGTTATTGTTGTTG+TGG - chr7.2:16839781-16839800 None:intergenic 35.0%
! GCTATAACTCTAGAAGAAAG+AGG - chr7.2:16840652-16840671 None:intergenic 35.0%
! TATGGTTATTGTTGTTGTGG+TGG - chr7.2:16839778-16839797 None:intergenic 35.0%
!! CATATCAAAGCTTTTGGAAG+TGG + chr7.2:16842064-16842083 MS.gene072348:CDS 35.0%
!! GATGATAGTGGAAAAAGGTA+TGG - chr7.2:16839796-16839815 None:intergenic 35.0%
AAAGGTCCTGAATCTCTAAG+AGG + chr7.2:16841767-16841786 MS.gene072348:CDS 40.0%
AAGCATCAGAGAACCGTTAA+TGG - chr7.2:16840461-16840480 None:intergenic 40.0%
ACTCCTTCTCAGATTCTCAT+TGG + chr7.2:16840190-16840209 MS.gene072348:CDS 40.0%
AGAGGTAGTTCTTCTCTTAG+AGG - chr7.2:16839851-16839870 None:intergenic 40.0%
AGATCAACAAGAACATGAGG+TGG + chr7.2:16839910-16839929 MS.gene072348:CDS 40.0%
ATGAGAATCTGAGAAGGAGT+AGG - chr7.2:16840190-16840209 None:intergenic 40.0%
ATTAACGGTTCTCTGATGCT+TGG + chr7.2:16840460-16840479 MS.gene072348:intron 40.0%
CATGGATCACAGTACAGAAA+AGG + chr7.2:16841749-16841768 MS.gene072348:CDS 40.0%
CTGCCATGGATTTAGAAGAA+AGG + chr7.2:16839954-16839973 MS.gene072348:CDS 40.0%
GGATGGTATATTAGCATGGT+TGG - chr7.2:16841021-16841040 None:intergenic 40.0%
GGATTCTTGTTCAGGATTCA+TGG + chr7.2:16840129-16840148 MS.gene072348:CDS 40.0%
GTTACTGTTGCACTTCACAT+AGG + chr7.2:16840010-16840029 MS.gene072348:CDS 40.0%
TCTGATGCTTGGATAGAAAG+AGG + chr7.2:16840471-16840490 MS.gene072348:intron 40.0%
TGAGAATCTGAGAAGGAGTA+GGG - chr7.2:16840189-16840208 None:intergenic 40.0%
! ATCAGTGATAGTGATCTCTG+AGG - chr7.2:16840092-16840111 None:intergenic 40.0%
! GATCTCTGAGGAGTTATTAG+AGG - chr7.2:16840080-16840099 None:intergenic 40.0%
! TGTTGTGGTGGTGAAGAAAA+GGG - chr7.2:16839766-16839785 None:intergenic 40.0%
! TTGTTGTGGTGGTGAAGAAA+AGG - chr7.2:16839767-16839786 None:intergenic 40.0%
!! GTGTGATGGATTTGAAGAAG+AGG + chr7.2:16842102-16842121 MS.gene072348:CDS 40.0%
!!! CTTTTGCTGTTAGAGGAGAT+TGG + chr7.2:16841960-16841979 MS.gene072348:CDS 40.0%
AAGCCATTTCAGCAGCACTA+GGG - chr7.2:16840045-16840064 None:intergenic 45.0%
ACAGGGCAAGAAAACTGAGT+TGG - chr7.2:16840217-16840236 None:intergenic 45.0%
AGAAGCAGAAGCAGAAGCAA+TGG - chr7.2:16840398-16840417 None:intergenic 45.0%
ATTTCAGCAGCACTAGGGTT+TGG - chr7.2:16840040-16840059 None:intergenic 45.0%
CACAACCAACAGGAATGCTA+AGG + chr7.2:16841792-16841811 MS.gene072348:CDS 45.0%
CTTGTTACTGTTGTGCACCA+GGG + chr7.2:16841819-16841838 MS.gene072348:CDS 45.0%
GGACCAATGAGAATCTGAGA+AGG - chr7.2:16840196-16840215 None:intergenic 45.0%
GGTAGTTCTTCTCTTAGAGG+AGG - chr7.2:16839848-16839867 None:intergenic 45.0%
TCTAAATCCATGGCAGTGCA+AGG - chr7.2:16839950-16839969 None:intergenic 45.0%
TCTTCTCTTAGAGGAGGAGA+AGG - chr7.2:16839842-16839861 None:intergenic 45.0%
TCTTGCTCTACTTCAGAAGC+TGG - chr7.2:16842133-16842152 None:intergenic 45.0%
TGGACTAAGAAGCCACAAAG+AGG - chr7.2:16840996-16841015 None:intergenic 45.0%
TGTGTGCCTCTTAGAGATTC+AGG - chr7.2:16841776-16841795 None:intergenic 45.0%
! AAACCCTAGTGCTGCTGAAA+TGG + chr7.2:16840039-16840058 MS.gene072348:CDS 45.0%
! GAAGTGGACATGCTGCTTAT+GGG + chr7.2:16842080-16842099 MS.gene072348:CDS 45.0%
! GTTGGTGAGGATTCTTGTTC+AGG + chr7.2:16840121-16840140 MS.gene072348:CDS 45.0%
! TCTTTGAGAGGCTTTGCTCT+TGG - chr7.2:16841866-16841885 None:intergenic 45.0%
!! AGAAAAGGGTGGTGGTTTTG+TGG - chr7.2:16839752-16839771 None:intergenic 45.0%
!! TCAATGTTGTTTCTGCACCC+TGG - chr7.2:16841839-16841858 None:intergenic 45.0%
!!! AGCAAGGCTTTTGCTGTTAG+AGG + chr7.2:16841953-16841972 MS.gene072348:CDS 45.0%
!! AATATAATTTAATTAAACTA+TGG - chr7.2:16841062-16841081 None:intergenic 5.0%
!!! CAAAATAAATATTTTTATTT+TGG - chr7.2:16841612-16841631 None:intergenic 5.0%
!!! TTATTTTAAGAAATAATTTT+GGG + chr7.2:16840701-16840720 MS.gene072348:intron 5.0%
!!! TTTATTTTAAGAAATAATTT+TGG + chr7.2:16840700-16840719 MS.gene072348:intron 5.0%
AATCCATGGCAGTGCAAGGA+AGG - chr7.2:16839946-16839965 None:intergenic 50.0%
AGGAGAAGGTGGTGAAGAAG+AGG - chr7.2:16839828-16839847 None:intergenic 50.0%
CCTGGTGCACAACAGTAACA+AGG - chr7.2:16841821-16841840 None:intergenic 50.0%
CCTTGTTACTGTTGTGCACC+AGG + chr7.2:16841818-16841837 MS.gene072348:CDS 50.0%
GAAGCCATTTCAGCAGCACT+AGG - chr7.2:16840046-16840065 None:intergenic 50.0%
TAGATGCATATGTGGGGGCA+TGG + chr7.2:16841731-16841750 MS.gene072348:intron 50.0%
TCTCTTAGAGGAGGAGAAGG+TGG - chr7.2:16839839-16839858 None:intergenic 50.0%
! CATGCTGCTTATGGGTGTGA+TGG + chr7.2:16842088-16842107 MS.gene072348:CDS 50.0%
! CTAAGAGGCACACAACCAAC+AGG + chr7.2:16841782-16841801 MS.gene072348:CDS 50.0%
! GGAAGTGGACATGCTGCTTA+TGG + chr7.2:16842079-16842098 MS.gene072348:CDS 50.0%
! GGTAGCCTTAGCATTCCTGT+TGG - chr7.2:16841800-16841819 None:intergenic 50.0%
! TGTGGTGGTGAAGAAAAGGG+TGG - chr7.2:16839763-16839782 None:intergenic 50.0%
!!! GGTGGTGGTTTTGTGGAGAA+GGG - chr7.2:16839745-16839764 None:intergenic 50.0%
AGACCTTCCTTGCACTGCCA+TGG + chr7.2:16839940-16839959 MS.gene072348:CDS 55.0%
GGTGGTGAAGAAAAGGGTGG+TGG - chr7.2:16839760-16839779 None:intergenic 55.0%
!!! GGGTGGTGGTTTTGTGGAGA+AGG - chr7.2:16839746-16839765 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 16839656 16842162 16839656 ID=MS.gene072348
chr7.2 mRNA 16839656 16842162 16839656 ID=MS.gene072348.t1;Parent=MS.gene072348
chr7.2 exon 16839656 16840273 16839656 ID=MS.gene072348.t1.exon1;Parent=MS.gene072348.t1
chr7.2 CDS 16839656 16840273 16839656 ID=cds.MS.gene072348.t1;Parent=MS.gene072348.t1
chr7.2 exon 16841734 16842162 16841734 ID=MS.gene072348.t1.exon2;Parent=MS.gene072348.t1
chr7.2 CDS 16841734 16842162 16841734 ID=cds.MS.gene072348.t1;Parent=MS.gene072348.t1
Gene Sequence

>MS.gene072348

ATGGCTGATAACCCTTACTCTAATCTTTTCTCTTCTTCATCAAGTTTCTTCCAATTCAACCATATTTTTCCATCTTCAAATTCAAACCCTTCTCCACAAAACCACCACCCTTTTCTTCACCACCACAACAACAATAACCATACCTTTTTCCACTATCATCATCATATTTCCTCTTCTTCACCACCTTCTCCTCCTCTAAGAGAAGAACTACCTCTTTTAAGCCTAATTCCAACAAAACAAGAAAAATATGATGAAGATCAACAAGAACATGAGGTGGATATTCAAGACCTTCCTTGCACTGCCATGGATTTAGAAGAAAGGGAAGAAGATGGTAGTAGTAGTAGAACTACTACTGTTACTGTTGCACTTCACATAGGTTTACCAAACCCTAGTGCTGCTGAAATGGCTTCTGTACTTTCTTCCTCTAATAACTCCTCAGAGATCACTATCACTGATAAAGAACATGTTGGTGAGGATTCTTGTTCAGGATTCATGGTTAATAATAGGCTTAACAAAGGACAATATTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCAACTCAGTTTTCTTGCCCTGTTTGCTCTAAAACTTTCAATAGATATAACAACATGCAGGTAGCTATATCATTATCAACACACACACATACACACTCACCAAAGACCTTGTTCTTCTGTTTTGTTTCATCTTTCACACTTCCTTTATAATTCAAGGTTTAAAACAAAGAAAAATAAATTTCCATTGCTTCTGCTTCTGCTTCTGCTTCCCTTTTCTGTCAATAACTTTCTTCCTTGATTTGAACCATTAACGGTTCTCTGATGCTTGGATAGAAAGAGGAAAAGATTGTTTGTTAAACTTTGATGTACTTACTTGTCTTCCTCTTTCATTTCTTTCTTTTTGAAGAAGTTATGATTATTAGTTTAAAGTTTTTCACTTCTGCTTTTTTTTCCTTGACCTCTTTCCTTCTTTTTTCTTTCTTCAGAAATACTTGACCTCTTTCTTCTAGAGTTATAGCATATATTAATTTCATTGGATTTTTTAAATTTATTTTAAGAAATAATTTTGGGATAGCTAGTGTTAAATTTTGCATGGTTTTAAATAAACAACTATTCTTCTAGCTTTTCCTGATTCATATATACTGAGAGACTGGGATCAGTACCTTACTACACCTTTCCTTTTCTTTGATTGACTAAACTACTCAATCAATGTTCCTTATGCCTTTTACTACATTGAAATCTGTGCTACTTCTTTCTGTATTTTCCCACCTGTATAGAACAGAAATTTTTTCAGTGTTTCTTCCAGATCGATCATTAAAATAAATAAATAAAAAATTGTTCCTCTTTGTGGCTTCTTAGTCCAATCCAACCATGCTAATATACCATCCAAATTTGCCTTCTTTTTTCCATAGTTTAATTAAATTATATTCTGTTTTTTTAGCTAGAAGAAATTGCTAAGTGCTAACTATTTGACAAATTTATTTAGCAAAGAACATTTAGAGATAGAAAAATGTGGAATACATCTTTAAATTTGTCACAGATGTTTAAAGCCTGTTTGAAACACTTTCCAAAAACTCTTCTTTAGTTTTTAAAAACTTGTTTGCGAAACTATTTTTAAAATTACAGTTTTGGAAACTGTCTTCAATTTTTTAGTTTTGGGACTAAAAAACTAAAACATGTAAAAGAATAACCATTGTAAAAAGAAGACTTGTATATTTCAAAAACTATTTCAAACAGGCCCTTAGTAATCAATTTTATTTTTTTCTTCTCTAACTTTATTTCAACTTTTTGTGATAGTATTTTTATTAGCTGCAGTGTTAGCTACACTCCAAATTAAATCTTTGCCCTTCATGATTGTTCATTAATAATTTTTTAAATTATTTATTTTGAATATGCAATGATCGTGTCAGACCGACCTTATTATCAAGATCTACTGAATTTCAGTTTCAGTCTTTTCCAAAATAAAAATATTTATTTTGTATGTATAAACATTCACTGAGTTTGTAGTACAAATTTTGATCATTTTGCTTTGTTAACTTTATACTAAAATCTTTATAAGATTTTTTGTTTTGTTTTTATAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGTCCTGAATCTCTAAGAGGCACACAACCAACAGGAATGCTAAGGCTACCTTGTTACTGTTGTGCACCAGGGTGCAGAAACAACATTGATCATCCAAGAGCAAAGCCTCTCAAAGATTTTAGAACACTTCAAACACATTACAAGAGGAAACATGGAATTAAGCCATTCATGTGTAGAAAATGTAGCAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTTTGGTATTGTATCTGTGGTTCTGATTTTAAACACAAGAGGTCTCTTAAAGATCATATCAAAGCTTTTGGAAGTGGACATGCTGCTTATGGGTGTGATGGATTTGAAGAAGAGGATGAACCAGCTTCTGAAGTAGAGCAAGATAATGAATGA
Protein sequence

>MS.gene072348.t1

MADNPYSNLFSSSSSFFQFNHIFPSSNSNPSPQNHHPFLHHHNNNNHTFFHYHHHISSSSPPSPPLREELPLLSLIPTKQEKYDEDQQEHEVDIQDLPCTAMDLEEREEDGSSSRTTTVTVALHIGLPNPSAAEMASVLSSSNNSSEITITDKEHVGEDSCSGFMVNNRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGCDGFEEEDEPASEVEQDNE