Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072393.t1 | XP_003625245.1 | 94.3 | 349 | 14 | 1 | 1 | 349 | 33 | 375 | 2.60E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072393.t1 | Q0WVU3 | 55.1 | 178 | 73 | 6 | 109 | 280 | 110 | 286 | 1.6e-37 | 158.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072393.t1 | G7KVC1 | 94.3 | 349 | 14 | 1 | 1 | 349 | 33 | 375 | 1.9e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene072393.t1 | TF | GARP-G2-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072393.t1 | MTR_7g093030 | 95.402 | 348 | 10 | 1 | 1 | 348 | 33 | 374 | 0.0 | 684 |
| MS.gene072393.t1 | MTR_7g093030 | 95.522 | 268 | 6 | 1 | 1 | 268 | 33 | 294 | 0.0 | 528 |
| MS.gene072393.t1 | MTR_1g053835 | 60.784 | 357 | 116 | 8 | 1 | 347 | 80 | 422 | 1.89e-138 | 400 |
| MS.gene072393.t1 | MTR_7g098250 | 53.049 | 164 | 76 | 1 | 177 | 339 | 253 | 416 | 1.87e-57 | 194 |
| MS.gene072393.t1 | MTR_1g080330 | 56.338 | 142 | 61 | 1 | 177 | 317 | 166 | 307 | 7.45e-51 | 174 |
| MS.gene072393.t1 | MTR_7g115530 | 52.448 | 143 | 67 | 1 | 185 | 326 | 217 | 359 | 1.97e-47 | 166 |
| MS.gene072393.t1 | MTR_7g088070 | 51.880 | 133 | 64 | 0 | 184 | 316 | 48 | 180 | 2.08e-47 | 162 |
| MS.gene072393.t1 | MTR_2g027860 | 51.724 | 145 | 67 | 2 | 186 | 327 | 49 | 193 | 7.36e-47 | 162 |
| MS.gene072393.t1 | MTR_7g088070 | 50.365 | 137 | 64 | 1 | 184 | 316 | 48 | 184 | 4.14e-45 | 156 |
| MS.gene072393.t1 | MTR_1g080330 | 56.410 | 117 | 50 | 1 | 177 | 292 | 166 | 282 | 1.08e-40 | 144 |
| MS.gene072393.t1 | MTR_7g115530 | 55.963 | 109 | 47 | 1 | 185 | 292 | 217 | 325 | 8.11e-38 | 138 |
| MS.gene072393.t1 | MTR_6g032990 | 46.053 | 152 | 63 | 3 | 185 | 318 | 41 | 191 | 1.18e-37 | 139 |
| MS.gene072393.t1 | MTR_7g068600 | 44.720 | 161 | 78 | 4 | 173 | 323 | 1 | 160 | 2.88e-37 | 134 |
| MS.gene072393.t1 | MTR_2g086450 | 45.349 | 172 | 70 | 5 | 169 | 317 | 27 | 197 | 1.94e-36 | 135 |
| MS.gene072393.t1 | MTR_1g053800 | 49.650 | 143 | 71 | 1 | 175 | 316 | 165 | 307 | 4.03e-35 | 130 |
| MS.gene072393.t1 | MTR_1g053830 | 58.000 | 100 | 41 | 1 | 169 | 268 | 1 | 99 | 2.49e-34 | 122 |
| MS.gene072393.t1 | MTR_5g041350 | 35.032 | 157 | 89 | 1 | 185 | 328 | 14 | 170 | 6.59e-32 | 123 |
| MS.gene072393.t1 | MTR_5g027440 | 42.466 | 146 | 71 | 4 | 186 | 318 | 25 | 170 | 3.15e-31 | 119 |
| MS.gene072393.t1 | MTR_2g027800 | 40.132 | 152 | 81 | 4 | 186 | 333 | 39 | 184 | 1.27e-29 | 115 |
| MS.gene072393.t1 | MTR_6g444980 | 40.625 | 160 | 83 | 5 | 179 | 328 | 26 | 183 | 1.94e-29 | 116 |
| MS.gene072393.t1 | MTR_6g444980 | 40.645 | 155 | 82 | 4 | 179 | 325 | 26 | 178 | 8.98e-29 | 114 |
| MS.gene072393.t1 | MTR_4g081710 | 34.437 | 151 | 83 | 2 | 185 | 321 | 16 | 164 | 1.70e-28 | 113 |
| MS.gene072393.t1 | MTR_2g027800 | 37.888 | 161 | 86 | 3 | 186 | 333 | 39 | 198 | 9.31e-28 | 110 |
| MS.gene072393.t1 | MTR_7g115530 | 55.294 | 85 | 37 | 1 | 185 | 268 | 217 | 301 | 1.62e-27 | 110 |
| MS.gene072393.t1 | MTR_1g090670 | 33.889 | 180 | 98 | 4 | 186 | 350 | 44 | 217 | 1.58e-25 | 104 |
| MS.gene072393.t1 | MTR_7g115530 | 65.152 | 66 | 23 | 0 | 185 | 250 | 217 | 282 | 2.08e-25 | 105 |
| MS.gene072393.t1 | MTR_7g093010 | 42.657 | 143 | 78 | 2 | 177 | 317 | 204 | 344 | 5.53e-25 | 104 |
| MS.gene072393.t1 | MTR_7g115530 | 66.038 | 53 | 18 | 0 | 185 | 237 | 217 | 269 | 4.53e-19 | 86.3 |
| MS.gene072393.t1 | MTR_7g115530 | 65.385 | 52 | 18 | 0 | 185 | 236 | 217 | 268 | 3.46e-18 | 84.0 |
| MS.gene072393.t1 | MTR_2g023580 | 60.656 | 61 | 24 | 0 | 182 | 242 | 51 | 111 | 5.94e-18 | 82.4 |
| MS.gene072393.t1 | MTR_3g064840 | 47.674 | 86 | 42 | 2 | 188 | 271 | 276 | 360 | 1.27e-17 | 84.0 |
| MS.gene072393.t1 | MTR_7g069660 | 48.101 | 79 | 40 | 1 | 182 | 260 | 67 | 144 | 3.53e-17 | 82.0 |
| MS.gene072393.t1 | MTR_8g066310 | 52.941 | 68 | 30 | 1 | 188 | 253 | 175 | 242 | 5.19e-17 | 81.6 |
| MS.gene072393.t1 | MTR_2g084230 | 35.795 | 176 | 92 | 6 | 108 | 270 | 26 | 193 | 5.58e-17 | 80.9 |
| MS.gene072393.t1 | MTR_2g084230 | 35.795 | 176 | 92 | 6 | 108 | 270 | 26 | 193 | 7.74e-17 | 81.3 |
| MS.gene072393.t1 | MTR_3g450310 | 57.627 | 59 | 25 | 0 | 184 | 242 | 17 | 75 | 1.49e-16 | 77.8 |
| MS.gene072393.t1 | MTR_8g086410 | 54.839 | 62 | 28 | 0 | 182 | 243 | 107 | 168 | 2.03e-16 | 80.5 |
| MS.gene072393.t1 | MTR_8g086410 | 54.839 | 62 | 28 | 0 | 182 | 243 | 105 | 166 | 2.09e-16 | 80.1 |
| MS.gene072393.t1 | MTR_1g112370 | 50.000 | 78 | 35 | 2 | 169 | 242 | 1 | 78 | 6.30e-16 | 78.2 |
| MS.gene072393.t1 | MTR_6g071625 | 58.182 | 55 | 23 | 0 | 188 | 242 | 204 | 258 | 1.49e-15 | 77.4 |
| MS.gene072393.t1 | MTR_0223s0040 | 55.738 | 61 | 27 | 0 | 182 | 242 | 14 | 74 | 2.46e-15 | 75.9 |
| MS.gene072393.t1 | MTR_5g029470 | 58.182 | 55 | 23 | 0 | 188 | 242 | 221 | 275 | 2.55e-15 | 77.0 |
| MS.gene072393.t1 | MTR_2g016220 | 53.226 | 62 | 29 | 0 | 182 | 243 | 85 | 146 | 2.75e-15 | 76.6 |
| MS.gene072393.t1 | MTR_2g016220 | 53.226 | 62 | 29 | 0 | 182 | 243 | 85 | 146 | 2.78e-15 | 76.6 |
| MS.gene072393.t1 | MTR_1g021520 | 52.381 | 63 | 30 | 0 | 188 | 250 | 128 | 190 | 3.12e-15 | 75.5 |
| MS.gene072393.t1 | MTR_8g086410 | 54.237 | 59 | 27 | 0 | 182 | 240 | 107 | 165 | 8.50e-15 | 75.5 |
| MS.gene072393.t1 | MTR_2g016220 | 50.000 | 66 | 29 | 1 | 182 | 243 | 85 | 150 | 2.40e-13 | 70.9 |
| MS.gene072393.t1 | MTR_4g021790 | 53.571 | 56 | 25 | 1 | 184 | 239 | 166 | 220 | 1.99e-12 | 67.0 |
| MS.gene072393.t1 | MTR_4g021855 | 51.613 | 62 | 29 | 1 | 178 | 239 | 160 | 220 | 2.35e-12 | 67.4 |
| MS.gene072393.t1 | MTR_2g450070 | 57.407 | 54 | 22 | 1 | 186 | 239 | 213 | 265 | 5.20e-12 | 67.4 |
| MS.gene072393.t1 | MTR_2g450070 | 57.407 | 54 | 22 | 1 | 186 | 239 | 213 | 265 | 5.73e-12 | 67.4 |
| MS.gene072393.t1 | MTR_1g093080 | 38.776 | 98 | 45 | 1 | 170 | 252 | 180 | 277 | 5.99e-12 | 66.6 |
| MS.gene072393.t1 | MTR_4g131580 | 47.059 | 85 | 41 | 3 | 186 | 270 | 200 | 280 | 1.31e-11 | 66.2 |
| MS.gene072393.t1 | MTR_4g113140 | 49.231 | 65 | 33 | 0 | 175 | 239 | 224 | 288 | 1.53e-11 | 65.5 |
| MS.gene072393.t1 | MTR_1g032570 | 55.357 | 56 | 24 | 1 | 184 | 239 | 129 | 183 | 2.49e-11 | 65.1 |
| MS.gene072393.t1 | MTR_1g032570 | 55.357 | 56 | 24 | 1 | 184 | 239 | 198 | 252 | 3.30e-11 | 65.1 |
| MS.gene072393.t1 | MTR_1g013170 | 51.471 | 68 | 32 | 1 | 186 | 253 | 191 | 257 | 3.42e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072393.t1 | AT5G06800 | 59.346 | 214 | 80 | 6 | 109 | 316 | 110 | 322 | 1.47e-69 | 222 |
| MS.gene072393.t1 | AT5G06800 | 57.991 | 219 | 80 | 7 | 109 | 316 | 110 | 327 | 3.74e-67 | 216 |
| MS.gene072393.t1 | AT5G29000 | 53.289 | 152 | 67 | 1 | 173 | 320 | 175 | 326 | 1.83e-52 | 178 |
| MS.gene072393.t1 | AT5G29000 | 53.289 | 152 | 67 | 1 | 173 | 320 | 175 | 326 | 1.83e-52 | 178 |
| MS.gene072393.t1 | AT5G29000 | 53.289 | 152 | 67 | 1 | 173 | 320 | 218 | 369 | 3.54e-52 | 178 |
| MS.gene072393.t1 | AT3G04450 | 44.505 | 182 | 90 | 3 | 143 | 320 | 162 | 336 | 1.99e-49 | 171 |
| MS.gene072393.t1 | AT3G04450 | 44.505 | 182 | 90 | 3 | 143 | 320 | 162 | 336 | 1.99e-49 | 171 |
| MS.gene072393.t1 | AT3G04450 | 44.505 | 182 | 90 | 3 | 143 | 320 | 202 | 376 | 3.67e-49 | 171 |
| MS.gene072393.t1 | AT4G28610 | 54.167 | 144 | 64 | 1 | 173 | 314 | 212 | 355 | 1.51e-48 | 168 |
| MS.gene072393.t1 | AT2G01060 | 50.331 | 151 | 73 | 2 | 184 | 332 | 13 | 163 | 4.27e-48 | 164 |
| MS.gene072393.t1 | AT3G13040 | 45.251 | 179 | 89 | 4 | 159 | 328 | 211 | 389 | 3.86e-44 | 158 |
| MS.gene072393.t1 | AT3G13040 | 45.251 | 179 | 89 | 4 | 159 | 328 | 211 | 389 | 3.86e-44 | 158 |
| MS.gene072393.t1 | AT3G13040 | 45.251 | 179 | 89 | 4 | 159 | 328 | 211 | 389 | 3.86e-44 | 158 |
| MS.gene072393.t1 | AT2G20400 | 53.077 | 130 | 60 | 1 | 186 | 314 | 231 | 360 | 2.55e-42 | 152 |
| MS.gene072393.t1 | AT2G20400 | 53.435 | 131 | 59 | 2 | 186 | 314 | 231 | 361 | 8.41e-41 | 147 |
| MS.gene072393.t1 | AT3G04030 | 46.584 | 161 | 68 | 3 | 175 | 317 | 32 | 192 | 7.09e-39 | 142 |
| MS.gene072393.t1 | AT5G06800 | 56.757 | 148 | 57 | 6 | 109 | 250 | 110 | 256 | 1.14e-37 | 136 |
| MS.gene072393.t1 | AT5G18240 | 45.342 | 161 | 70 | 3 | 176 | 318 | 33 | 193 | 1.27e-37 | 139 |
| MS.gene072393.t1 | AT5G18240 | 45.342 | 161 | 70 | 3 | 176 | 318 | 33 | 193 | 1.27e-37 | 139 |
| MS.gene072393.t1 | AT3G04030 | 45.342 | 161 | 69 | 4 | 175 | 317 | 32 | 191 | 6.90e-36 | 134 |
| MS.gene072393.t1 | AT3G24120 | 42.282 | 149 | 70 | 2 | 186 | 321 | 41 | 186 | 2.11e-35 | 131 |
| MS.gene072393.t1 | AT1G69580 | 41.509 | 159 | 67 | 3 | 185 | 321 | 33 | 187 | 7.01e-35 | 130 |
| MS.gene072393.t1 | AT5G18240 | 44.720 | 161 | 69 | 4 | 176 | 318 | 33 | 191 | 1.29e-34 | 131 |
| MS.gene072393.t1 | AT1G69580 | 40.625 | 160 | 68 | 3 | 185 | 321 | 33 | 188 | 7.32e-34 | 128 |
| MS.gene072393.t1 | AT3G04030 | 44.099 | 161 | 66 | 4 | 175 | 317 | 32 | 186 | 1.25e-33 | 128 |
| MS.gene072393.t1 | AT4G13640 | 42.361 | 144 | 70 | 1 | 186 | 316 | 37 | 180 | 1.44e-33 | 126 |
| MS.gene072393.t1 | AT3G24120 | 41.447 | 152 | 70 | 3 | 186 | 321 | 41 | 189 | 2.19e-33 | 125 |
| MS.gene072393.t1 | AT1G79430 | 44.218 | 147 | 74 | 4 | 179 | 318 | 25 | 170 | 3.79e-33 | 126 |
| MS.gene072393.t1 | AT5G45580 | 41.212 | 165 | 66 | 5 | 186 | 324 | 7 | 166 | 4.09e-33 | 124 |
| MS.gene072393.t1 | AT5G45580 | 41.212 | 165 | 66 | 5 | 186 | 324 | 23 | 182 | 5.01e-33 | 124 |
| MS.gene072393.t1 | AT5G18240 | 42.857 | 161 | 68 | 4 | 176 | 318 | 33 | 187 | 2.19e-32 | 125 |
| MS.gene072393.t1 | AT5G18240 | 42.857 | 161 | 68 | 4 | 176 | 318 | 33 | 187 | 2.19e-32 | 125 |
| MS.gene072393.t1 | AT4G13640 | 41.497 | 147 | 70 | 2 | 186 | 316 | 37 | 183 | 1.39e-31 | 120 |
| MS.gene072393.t1 | AT2G01060 | 48.246 | 114 | 57 | 2 | 221 | 332 | 1 | 114 | 9.49e-29 | 112 |
| MS.gene072393.t1 | AT5G29000 | 56.818 | 88 | 36 | 1 | 173 | 258 | 218 | 305 | 8.23e-28 | 111 |
| MS.gene072393.t1 | AT3G04450 | 45.192 | 104 | 50 | 2 | 143 | 246 | 202 | 298 | 1.16e-25 | 105 |
| MS.gene072393.t1 | AT3G12730 | 37.908 | 153 | 82 | 5 | 177 | 317 | 12 | 163 | 5.51e-25 | 101 |
| MS.gene072393.t1 | AT2G42660 | 56.522 | 69 | 30 | 0 | 182 | 250 | 46 | 114 | 7.33e-20 | 88.2 |
| MS.gene072393.t1 | AT3G04030 | 41.379 | 116 | 52 | 2 | 218 | 317 | 1 | 116 | 1.70e-18 | 85.5 |
| MS.gene072393.t1 | AT4G04605 | 50.000 | 78 | 36 | 1 | 182 | 256 | 10 | 87 | 2.72e-17 | 80.1 |
| MS.gene072393.t1 | AT2G02060 | 63.793 | 58 | 21 | 0 | 182 | 239 | 25 | 82 | 1.54e-16 | 79.0 |
| MS.gene072393.t1 | AT2G02060 | 63.793 | 58 | 21 | 0 | 182 | 239 | 25 | 82 | 1.54e-16 | 79.0 |
| MS.gene072393.t1 | AT2G38300 | 56.452 | 62 | 27 | 0 | 182 | 243 | 50 | 111 | 2.19e-16 | 79.7 |
| MS.gene072393.t1 | AT4G17695 | 52.941 | 68 | 30 | 1 | 188 | 253 | 166 | 233 | 2.51e-16 | 79.3 |
| MS.gene072393.t1 | AT1G14600 | 58.065 | 62 | 26 | 0 | 182 | 243 | 19 | 80 | 2.62e-16 | 78.2 |
| MS.gene072393.t1 | AT1G32240 | 52.941 | 68 | 30 | 1 | 188 | 253 | 215 | 282 | 5.69e-16 | 78.6 |
| MS.gene072393.t1 | AT1G79430 | 38.679 | 106 | 59 | 3 | 218 | 318 | 1 | 105 | 6.70e-16 | 77.4 |
| MS.gene072393.t1 | AT1G32240 | 52.941 | 68 | 30 | 1 | 188 | 253 | 215 | 282 | 7.08e-16 | 78.6 |
| MS.gene072393.t1 | AT5G16560 | 45.679 | 81 | 39 | 1 | 188 | 263 | 221 | 301 | 1.43e-15 | 77.8 |
| MS.gene072393.t1 | AT2G06020 | 54.386 | 57 | 26 | 0 | 186 | 242 | 86 | 142 | 1.73e-15 | 76.6 |
| MS.gene072393.t1 | AT2G40260 | 59.322 | 59 | 23 | 1 | 185 | 242 | 80 | 138 | 2.04e-15 | 77.4 |
| MS.gene072393.t1 | AT5G42630 | 50.000 | 64 | 32 | 0 | 188 | 251 | 107 | 170 | 6.03e-15 | 73.6 |
| MS.gene072393.t1 | AT5G42630 | 50.000 | 64 | 32 | 0 | 188 | 251 | 107 | 170 | 1.10e-14 | 73.9 |
| MS.gene072393.t1 | AT3G04030 | 37.931 | 116 | 50 | 3 | 218 | 317 | 1 | 110 | 1.14e-13 | 71.2 |
| MS.gene072393.t1 | AT4G04580 | 49.180 | 61 | 31 | 0 | 182 | 242 | 10 | 70 | 1.76e-13 | 68.2 |
| MS.gene072393.t1 | AT4G04555 | 51.471 | 68 | 28 | 1 | 180 | 242 | 3 | 70 | 4.26e-13 | 65.5 |
| MS.gene072393.t1 | AT4G37180 | 50.000 | 64 | 32 | 0 | 176 | 239 | 200 | 263 | 1.35e-12 | 68.6 |
| MS.gene072393.t1 | AT5G18240 | 35.897 | 117 | 53 | 3 | 218 | 318 | 1 | 111 | 1.41e-12 | 68.2 |
| MS.gene072393.t1 | AT4G37180 | 50.000 | 64 | 32 | 0 | 176 | 239 | 207 | 270 | 1.57e-12 | 68.2 |
| MS.gene072393.t1 | AT5G58080 | 53.333 | 60 | 27 | 1 | 180 | 239 | 188 | 246 | 1.46e-11 | 66.2 |
| MS.gene072393.t1 | AT2G40970 | 46.053 | 76 | 38 | 2 | 166 | 239 | 83 | 157 | 1.56e-11 | 64.3 |
| MS.gene072393.t1 | AT2G03500 | 49.254 | 67 | 31 | 1 | 173 | 239 | 223 | 286 | 4.06e-11 | 64.3 |
Find 0 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCATATAAAATAAAAAAATA+AGG | + | 51337:17985-18004 | None:intergenic | 10.0% |
| !!! | CCTTATTTTTTTATTTTATA+TGG | - | 51337:17982-18001 | MS.gene072393:CDS | 10.0% |
| !!! | AAAATTTATTCAAGTTTTCT+GGG | + | 51337:16338-16357 | None:intergenic | 15.0% |
| !! | AGTATAAATATGTTATGACA+CGG | + | 51337:16603-16622 | None:intergenic | 20.0% |
| !! | ATCATATAAGGTTAATGATT+TGG | - | 51337:16173-16192 | MS.gene072393:CDS | 20.0% |
| !! | TTTCTAATCATATTCTTTCT+TGG | - | 51337:18027-18046 | MS.gene072393:CDS | 20.0% |
| !!! | AACTTGAATAAATTTTCATG+TGG | - | 51337:16342-16361 | MS.gene072393:intron | 20.0% |
| !!! | ACATTAGTTTGTTCAATATT+AGG | + | 51337:17558-17577 | None:intergenic | 20.0% |
| !!! | ACTTGAATAAATTTTCATGT+GGG | - | 51337:16343-16362 | MS.gene072393:intron | 20.0% |
| !!! | CTGTTTTTTAATGATGATTT+AGG | + | 51337:17919-17938 | None:intergenic | 20.0% |
| !!! | GAAAATTTATTCAAGTTTTC+TGG | + | 51337:16339-16358 | None:intergenic | 20.0% |
| ! | AAAAAACAGTTTGTAACGTA+AGG | - | 51337:17930-17949 | MS.gene072393:CDS | 25.0% |
| ! | AAAAGCTATATTGAAGATGA+TGG | - | 51337:17116-17135 | MS.gene072393:CDS | 25.0% |
| ! | AAATATTGCTAAAGATGTTG+AGG | - | 51337:18180-18199 | MS.gene072393:CDS | 25.0% |
| ! | AAGATTGATTATTATCAACG+TGG | + | 51337:16143-16162 | None:intergenic | 25.0% |
| ! | AAGTTCCTAAAGAAAATGAA+TGG | + | 51337:17858-17877 | None:intergenic | 25.0% |
| ! | ATAAATCATCGTATCACATT+AGG | - | 51337:16738-16757 | MS.gene072393:intron | 25.0% |
| ! | ATGAAATTAATCAAGCAACT+TGG | + | 51337:17709-17728 | None:intergenic | 25.0% |
| ! | ATGGTTAAATTATCTCCTTT+AGG | - | 51337:17453-17472 | MS.gene072393:CDS | 25.0% |
| ! | CAAGTAAAACAAGAATTAGA+TGG | - | 51337:16942-16961 | MS.gene072393:intron | 25.0% |
| ! | GAAAGAAAATAAGCACATTT+GGG | + | 51337:17526-17545 | None:intergenic | 25.0% |
| ! | TAATGGAAATCATGACTATA+TGG | - | 51337:16458-16477 | MS.gene072393:intron | 25.0% |
| ! | TGAAAGAAAATAAGCACATT+TGG | + | 51337:17527-17546 | None:intergenic | 25.0% |
| ! | TGTATTTATATCCACTAGAA+TGG | - | 51337:17374-17393 | MS.gene072393:CDS | 25.0% |
| !! | AGCTCATCATTTTGTAATAA+TGG | - | 51337:16441-16460 | MS.gene072393:intron | 25.0% |
| !! | ATCATCTTCAATATAGCTTT+TGG | + | 51337:17117-17136 | None:intergenic | 25.0% |
| !! | ATGACTTTTCACATGAAATA+TGG | + | 51337:17157-17176 | None:intergenic | 25.0% |
| !! | GTATCATCATTGATTGTATT+TGG | + | 51337:18157-18176 | None:intergenic | 25.0% |
| !! | TATTGTTTTCTTGCTTATAG+AGG | - | 51337:17086-17105 | MS.gene072393:CDS | 25.0% |
| !! | TTTGAGTTCTCAATCATATA+AGG | - | 51337:16161-16180 | MS.gene072393:CDS | 25.0% |
| AAACTAATGTGTCCAATTTC+AGG | - | 51337:17568-17587 | MS.gene072393:intron | 30.0% | |
| AAATTAATCAAGCAACTTGG+TGG | + | 51337:17706-17725 | None:intergenic | 30.0% | |
| AACTAATGTGTCCAATTTCA+GGG | - | 51337:17569-17588 | MS.gene072393:intron | 30.0% | |
| AACTTCAATTAGATGCACAA+AGG | - | 51337:17800-17819 | MS.gene072393:intron | 30.0% | |
| AAGGGAAAACAATCATGTAT+TGG | - | 51337:16218-16237 | MS.gene072393:CDS | 30.0% | |
| TAATGTCAGTCTGGTTAAAT+AGG | - | 51337:17318-17337 | MS.gene072393:CDS | 30.0% | |
| TAATTGAAGTTCAAACCACT+AGG | + | 51337:17488-17507 | None:intergenic | 30.0% | |
| TTGGTGAAATCTCAATTGAA+TGG | - | 51337:16294-16313 | MS.gene072393:intron | 30.0% | |
| TTTGCAAAATGATTCTTCTG+CGG | - | 51337:16489-16508 | MS.gene072393:CDS | 30.0% | |
| ! | CAAGAGTACAAAAGTAGTTT+AGG | + | 51337:17669-17688 | None:intergenic | 30.0% |
| ! | GGTCTGAAATGAGTTTATAA+CGG | + | 51337:17964-17983 | None:intergenic | 30.0% |
| ! | GTCTGAAATGAGTTTATAAC+GGG | + | 51337:17963-17982 | None:intergenic | 30.0% |
| !! | AACAAGAATTAGATGGACTA+AGG | - | 51337:16949-16968 | MS.gene072393:intron | 30.0% |
| !! | CCATAAGAAGTATTGTGTTA+CGG | + | 51337:17437-17456 | None:intergenic | 30.0% |
| !! | TTGAGGTTTCTATTTCTGAA+GGG | - | 51337:18197-18216 | MS.gene072393:CDS | 30.0% |
| !!! | AACAACTTTTGCTGTTCAAT+TGG | + | 51337:16393-16412 | None:intergenic | 30.0% |
| !!! | TTTTGCTGTTCAATTGGAAA+AGG | + | 51337:16387-16406 | None:intergenic | 30.0% |
| AAACTTCCTGCTGAAATTGT+TGG | + | 51337:16878-16897 | None:intergenic | 35.0% | |
| ACTAGGCAATCATATCCTAA+AGG | + | 51337:17471-17490 | None:intergenic | 35.0% | |
| CAGCAAAAGTTGTTCTTTGA+TGG | - | 51337:16399-16418 | MS.gene072393:intron | 35.0% | |
| CATAGTGAATAATGTCAGTC+TGG | - | 51337:17309-17328 | MS.gene072393:CDS | 35.0% | |
| CCGTAACACAATACTTCTTA+TGG | - | 51337:17434-17453 | MS.gene072393:CDS | 35.0% | |
| CCTAAAGAAAATGAATGGCA+AGG | + | 51337:17853-17872 | None:intergenic | 35.0% | |
| GGAAGTTTATCAACTTCTCT+TGG | - | 51337:16890-16909 | MS.gene072393:intron | 35.0% | |
| TAATTATAGCATCCGTTTGC+AGG | - | 51337:16784-16803 | MS.gene072393:intron | 35.0% | |
| TATGCAACAGAAAACTGCAT+GGG | - | 51337:16099-16118 | MS.gene072393:CDS | 35.0% | |
| TCAATCTTCTACCATTCTAG+TGG | + | 51337:17388-17407 | None:intergenic | 35.0% | |
| TTATGCAACAGAAAACTGCA+TGG | - | 51337:16098-16117 | MS.gene072393:CDS | 35.0% | |
| TTGTCAGATTTCCCTGAAAT+TGG | + | 51337:17583-17602 | None:intergenic | 35.0% | |
| ! | CCTTGCCATTCATTTTCTTT+AGG | - | 51337:17850-17869 | MS.gene072393:CDS | 35.0% |
| ! | TTTAGGATATGATTGCCTAG+TGG | - | 51337:17470-17489 | MS.gene072393:CDS | 35.0% |
| ! | TTTCATGTGGGAATTTTCCT+GGG | - | 51337:16355-16374 | MS.gene072393:intron | 35.0% |
| ! | TTTTCATGTGGGAATTTTCC+TGG | - | 51337:16354-16373 | MS.gene072393:intron | 35.0% |
| !! | GTTGAGGTTTCTATTTCTGA+AGG | - | 51337:18196-18215 | MS.gene072393:CDS | 35.0% |
| !! | TCAAGTTTTCTGGGAATCTA+AGG | + | 51337:16329-16348 | None:intergenic | 35.0% |
| !! | TGAGGTTTCTATTTCTGAAG+GGG | - | 51337:18198-18217 | MS.gene072393:CDS | 35.0% |
| AACGATCAAGATACTACTGG+AGG | - | 51337:16555-16574 | MS.gene072393:intron | 40.0% | |
| AACGTTACAATTGCGACTTG+AGG | - | 51337:18063-18082 | MS.gene072393:CDS | 40.0% | |
| AGTGTTAGACAGTTCGAAGT+TGG | + | 51337:16265-16284 | None:intergenic | 40.0% | |
| ATAGATGATGTGCAGCATGT+TGG | - | 51337:17613-17632 | MS.gene072393:intron | 40.0% | |
| ATGAGAATCCTTGCATCTCA+CGG | - | 51337:16631-16650 | MS.gene072393:intron | 40.0% | |
| CATGCTGCACATCATCTATA+TGG | + | 51337:17612-17631 | None:intergenic | 40.0% | |
| CCCTTAGAGATTGACACAAA+GGG | + | 51337:16203-16222 | None:intergenic | 40.0% | |
| CCCTTTGTGTCAATCTCTAA+GGG | - | 51337:16200-16219 | MS.gene072393:CDS | 40.0% | |
| GTCTAACACTTTGCAAGCAT+TGG | - | 51337:16275-16294 | MS.gene072393:intron | 40.0% | |
| GTGTTAGACAGTTCGAAGTT+GGG | + | 51337:16264-16283 | None:intergenic | 40.0% | |
| GTTGCATAAAAAGCAGAAGC+TGG | + | 51337:16087-16106 | None:intergenic | 40.0% | |
| TCCAACGATCAAGATACTAC+TGG | - | 51337:16552-16571 | MS.gene072393:intron | 40.0% | |
| TCCAGTAGTATCTTGATCGT+TGG | + | 51337:16556-16575 | None:intergenic | 40.0% | |
| TCCCTTAGAGATTGACACAA+AGG | + | 51337:16204-16223 | None:intergenic | 40.0% | |
| TCCCTTTGTGTCAATCTCTA+AGG | - | 51337:16199-16218 | MS.gene072393:CDS | 40.0% | |
| TGATGAGCTGTTGCTAAATG+AGG | + | 51337:16430-16449 | None:intergenic | 40.0% | |
| TGTTAGACAGTTCGAAGTTG+GGG | + | 51337:16263-16282 | None:intergenic | 40.0% | |
| TTGCAGTGGCTTTCAAATCA+AGG | - | 51337:17768-17787 | MS.gene072393:intron | 40.0% | |
| TTGTCTCCAACAATTTCAGC+AGG | - | 51337:16869-16888 | MS.gene072393:intron | 40.0% | |
| ! | AAATTACCTTGAGCTGACTC+TGG | + | 51337:17210-17229 | None:intergenic | 40.0% |
| !! | ACACTACTCTTGATTTGCAG+TGG | - | 51337:17754-17773 | MS.gene072393:intron | 40.0% |
| !! | TTGAAGATGATGGACTCTGA+AGG | - | 51337:17126-17145 | MS.gene072393:CDS | 40.0% |
| !! | TTGGAAGCACTTCTTCTAGT+GGG | - | 51337:16909-16928 | MS.gene072393:intron | 40.0% |
| CAATTGCGACTTGAGGAACA+AGG | - | 51337:18070-18089 | MS.gene072393:CDS | 45.0% | |
| GATCAAGATACTACTGGAGG+TGG | - | 51337:16558-16577 | MS.gene072393:intron | 45.0% | |
| GCGTCTTCATGAACAACTAG+AGG | - | 51337:17822-17841 | MS.gene072393:intron | 45.0% | |
| GTTATGACACGGATCCTCTT+CGG | + | 51337:16592-16611 | None:intergenic | 45.0% | |
| TGAGAATCCTTGCATCTCAC+GGG | - | 51337:16632-16651 | MS.gene072393:intron | 45.0% | |
| TTGAGTGTGTGAATCGCCTT+GGG | - | 51337:16990-17009 | MS.gene072393:intron | 45.0% | |
| !! | CTTGGAAGCACTTCTTCTAG+TGG | - | 51337:16908-16927 | MS.gene072393:intron | 45.0% |
| !!! | CTTATTTTTTTATTTTATAT+GGG | - | 51337:17983-18002 | MS.gene072393:CDS | 5.0% |
| ACTTACTATCAGCACCCCCA+AGG | + | 51337:17009-17028 | None:intergenic | 50.0% | |
| ATCCACGAGCAACCTGCAAA+CGG | + | 51337:16799-16818 | None:intergenic | 50.0% | |
| ATTCAACGACCAAGCTCTGC+TGG | + | 51337:16529-16548 | None:intergenic | 50.0% | |
| CAAGATACTACTGGAGGTGG+TGG | - | 51337:16561-16580 | MS.gene072393:intron | 50.0% | |
| CAGAAGCTGGTGACTCGAAA+CGG | + | 51337:16074-16093 | None:intergenic | 50.0% | |
| GAGAATCCTTGCATCTCACG+GGG | - | 51337:16633-16652 | MS.gene072393:intron | 50.0% | |
| GTTCGAAGTTGGGGTCATGT+TGG | + | 51337:16254-16273 | None:intergenic | 50.0% | |
| GTTGAGTGTGTGAATCGCCT+TGG | - | 51337:16989-17008 | MS.gene072393:intron | 50.0% | |
| TGAGTGTGTGAATCGCCTTG+GGG | - | 51337:16991-17010 | MS.gene072393:intron | 50.0% | |
| TTCATGCCAGAGTCAGCTCA+AGG | - | 51337:17201-17220 | MS.gene072393:intron | 50.0% | |
| TTTCTTCCCCGTGAGATGCA+AGG | + | 51337:16642-16661 | None:intergenic | 50.0% | |
| ! | ATTGGAAAAGGCTTGCTCCC+AGG | + | 51337:16375-16394 | None:intergenic | 50.0% |
| ATCCGTTTGCAGGTTGCTCG+TGG | - | 51337:16794-16813 | MS.gene072393:intron | 55.0% | |
| CTCTGCTGGAGAGGTAGAAG+AGG | + | 51337:16515-16534 | None:intergenic | 55.0% | |
| GAGTGTGTGAATCGCCTTGG+GGG | - | 51337:16992-17011 | MS.gene072393:intron | 55.0% | |
| TCTACCTCTCCAGCAGAGCT+TGG | - | 51337:16517-16536 | MS.gene072393:intron | 55.0% | |
| ACGACCAAGCTCTGCTGGAG+AGG | + | 51337:16524-16543 | None:intergenic | 60.0% | |
| !! | AGGTGGTGGAGAGACCGAAG+AGG | - | 51337:16575-16594 | MS.gene072393:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51337 | gene | 16066 | 18237 | 16066 | ID=MS.gene072393 |
| 51337 | mRNA | 16066 | 18237 | 16066 | ID=MS.gene072393.t1;Parent=MS.gene072393 |
| 51337 | exon | 17824 | 18237 | 17824 | ID=MS.gene072393.t1.exon1;Parent=MS.gene072393.t1 |
| 51337 | CDS | 17824 | 18237 | 17824 | ID=cds.MS.gene072393.t1;Parent=MS.gene072393.t1 |
| 51337 | exon | 17281 | 17497 | 17281 | ID=MS.gene072393.t1.exon2;Parent=MS.gene072393.t1 |
| 51337 | CDS | 17281 | 17497 | 17281 | ID=cds.MS.gene072393.t1;Parent=MS.gene072393.t1 |
| 51337 | exon | 17081 | 17197 | 17081 | ID=MS.gene072393.t1.exon3;Parent=MS.gene072393.t1 |
| 51337 | CDS | 17081 | 17197 | 17081 | ID=cds.MS.gene072393.t1;Parent=MS.gene072393.t1 |
| 51337 | exon | 16659 | 16713 | 16659 | ID=MS.gene072393.t1.exon4;Parent=MS.gene072393.t1 |
| 51337 | CDS | 16659 | 16713 | 16659 | ID=cds.MS.gene072393.t1;Parent=MS.gene072393.t1 |
| 51337 | exon | 16460 | 16529 | 16460 | ID=MS.gene072393.t1.exon5;Parent=MS.gene072393.t1 |
| 51337 | CDS | 16460 | 16529 | 16460 | ID=cds.MS.gene072393.t1;Parent=MS.gene072393.t1 |
| 51337 | exon | 16066 | 16248 | 16066 | ID=MS.gene072393.t1.exon6;Parent=MS.gene072393.t1 |
| 51337 | CDS | 16066 | 16248 | 16066 | ID=cds.MS.gene072393.t1;Parent=MS.gene072393.t1 |
| Gene Sequence |
| Protein sequence |
