Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072556.t1 | XP_013450454.1 | 100 | 202 | 0 | 0 | 1 | 202 | 1 | 202 | 4.00E-77 | 297.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072556.t1 | Q96NC0 | 56.1 | 196 | 83 | 3 | 8 | 201 | 3 | 197 | 4.3e-32 | 139.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072556.t1 | A0A072U456 | 100.0 | 202 | 0 | 0 | 1 | 202 | 1 | 202 | 2.9e-77 | 297.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene072556.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072556.t1 | MTR_7g112060 | 100.000 | 202 | 0 | 0 | 1 | 202 | 1 | 202 | 3.03e-149 | 412 |
| MS.gene072556.t1 | MTR_7g112060 | 99.505 | 202 | 0 | 1 | 1 | 202 | 1 | 201 | 8.88e-147 | 406 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072556.t1 | AT3G05760 | 72.000 | 200 | 54 | 1 | 4 | 201 | 2 | 201 | 7.17e-95 | 275 |
| MS.gene072556.t1 | AT3G05760 | 79.021 | 143 | 30 | 0 | 5 | 147 | 3 | 145 | 6.45e-83 | 243 |
Find 42 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGACGTTGCTGCCTTGA+TGG | 0.273991 | 7.3:-4408514 | MS.gene072556:CDS |
| AACTACTTGGATCATATTAA+TGG | 0.276389 | 7.3:-4410072 | MS.gene072556:CDS |
| GCAACGTCAGGATCCATTTC+AGG | 0.287879 | 7.3:+4408525 | None:intergenic |
| GTTGCTGCCTTGATGGGGTT+TGG | 0.376323 | 7.3:-4408507 | MS.gene072556:CDS |
| CCTGACGTTGCTGCCTTGAT+GGG | 0.380236 | 7.3:-4408513 | MS.gene072556:CDS |
| AGAAAGAAAGCGACTGCGTC+GGG | 0.394814 | 7.3:-4408825 | MS.gene072556:CDS |
| TCATAATCTCTATGTTTCAA+TGG | 0.398737 | 7.3:+4411717 | None:intergenic |
| AATTGAACTTACACTGTTGC+TGG | 0.398841 | 7.3:+4412081 | None:intergenic |
| CTTGCTCTGTAAAGCTTCCT+AGG | 0.401772 | 7.3:+4409221 | None:intergenic |
| TCAAGTACCTGTTGGCTTAG+TGG | 0.422359 | 7.3:+4411311 | None:intergenic |
| AGCAGTAGAAGAACCTGAAA+TGG | 0.433262 | 7.3:-4408538 | MS.gene072556:CDS |
| TCCACAGATCAGAGAGCGTT+GGG | 0.434413 | 7.3:-4409949 | MS.gene072556:intron |
| ATTCGGTTGAATTAGGCCGC+TGG | 0.437263 | 7.3:-4411985 | MS.gene072556:intron |
| CCCATCAAGGCAGCAACGTC+AGG | 0.440366 | 7.3:+4408513 | None:intergenic |
| TGCTCGTGAGCGTGAGAGAC+AGG | 0.449139 | 7.3:-4411911 | MS.gene072556:CDS |
| TGAACGTTCTTCTCTCAAAC+AGG | 0.469716 | 7.3:-4409911 | MS.gene072556:intron |
| TTCGGTTGAATTAGGCCGCT+GGG | 0.484855 | 7.3:-4411984 | MS.gene072556:intron |
| TTCAATGGCTTCCTCTGCAC+CGG | 0.489779 | 7.3:+4411732 | None:intergenic |
| GAAGGACTCAGCAAACTACT+TGG | 0.508744 | 7.3:-4410085 | MS.gene072556:CDS |
| GGTTGCACCACTAAGCCAAC+AGG | 0.522528 | 7.3:-4411318 | MS.gene072556:intron |
| GAAGAGAAAGCAAAACCTAA+AGG | 0.524374 | 7.3:-4411886 | MS.gene072556:intron |
| AAGAAAGAAAGCGACTGCGT+CGG | 0.529732 | 7.3:-4408826 | MS.gene072556:CDS |
| GGTTTGAAAATCTGAAGAAA+CGG | 0.530251 | 7.3:-4409249 | MS.gene072556:CDS |
| TGTTGGCTTAGTGGTGCAAC+CGG | 0.533524 | 7.3:+4411320 | None:intergenic |
| ATATATAGGTAGAGGTCCTC+CGG | 0.536652 | 7.3:-4411751 | MS.gene072556:intron |
| TTCCACAGATCAGAGAGCGT+TGG | 0.536771 | 7.3:-4409950 | MS.gene072556:intron |
| GTAGACCTTGAATCCCGCTT+GGG | 0.547442 | 7.3:-4411693 | MS.gene072556:CDS |
| GCTGCCTTGATGGGGTTTGG+AGG | 0.549348 | 7.3:-4408504 | MS.gene072556:CDS |
| AGTAGACCTTGAATCCCGCT+TGG | 0.550337 | 7.3:-4411694 | MS.gene072556:CDS |
| GTAGAGGTCCTCCGGTGCAG+AGG | 0.551585 | 7.3:-4411743 | MS.gene072556:CDS |
| AGTTTGTGAGTGCGTGGTGA+AGG | 0.552418 | 7.3:-4410103 | MS.gene072556:CDS |
| CTAGGAAGCTTTACAGAGCA+AGG | 0.559657 | 7.3:-4409220 | MS.gene072556:intron |
| AATGGCTTCCTCTGCACCGG+AGG | 0.560400 | 7.3:+4411735 | None:intergenic |
| CTGACGTTGCTGCCTTGATG+GGG | 0.560761 | 7.3:-4408512 | MS.gene072556:CDS |
| CTGAAGAAACGGAAAGACCT+AGG | 0.564143 | 7.3:-4409238 | MS.gene072556:CDS |
| ATTAAAACAGCAACAAGAAG+AGG | 0.569720 | 7.3:-4408849 | MS.gene072556:CDS |
| AAAACCTCCAAACCCCATCA+AGG | 0.581455 | 7.3:+4408500 | None:intergenic |
| GATGAATGCAGGTTCAGGAA+CGG | 0.611812 | 7.3:-4409270 | MS.gene072556:intron |
| CTGCTCAGTTTGTGAGTGCG+TGG | 0.632386 | 7.3:-4410109 | MS.gene072556:CDS |
| TCGGTTGAATTAGGCCGCTG+GGG | 0.650254 | 7.3:-4411983 | MS.gene072556:intron |
| TGAACTTACACTGTTGCTGG+TGG | 0.666094 | 7.3:+4412084 | None:intergenic |
| GAATGTGTTGTCAACCCCAG+CGG | 0.671454 | 7.3:+4411969 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr7.3:4408784-4408803 | MS.gene072556:intron | 0.0% |
| !! | TTCAAATTAATAATTTGATT+CGG | - | chr7.3:4408571-4408590 | MS.gene072556:intron | 10.0% |
| !! | AACTTACCTAATAATAATTA+GGG | + | chr7.3:4410980-4410999 | None:intergenic | 15.0% |
| !! | ATATACATTATTAAATCCAA+TGG | + | chr7.3:4410428-4410447 | None:intergenic | 15.0% |
| !! | ATATATATATATATAGGTAG+AGG | - | chr7.3:4408814-4408833 | MS.gene072556:CDS | 15.0% |
| !!! | AAATTTTAGAAATGATCTTA+GGG | - | chr7.3:4409769-4409788 | MS.gene072556:intron | 15.0% |
| !!! | ATTTTGATATTTACAGATTT+GGG | - | chr7.3:4410734-4410753 | MS.gene072556:intron | 15.0% |
| !!! | TAAATTTTAGAAATGATCTT+AGG | - | chr7.3:4409768-4409787 | MS.gene072556:intron | 15.0% |
| !!! | TGTTTATTTATTTCATTTTC+TGG | + | chr7.3:4410704-4410723 | None:intergenic | 15.0% |
| !!! | TTGATCTATAACTAAAATTT+TGG | - | chr7.3:4411499-4411518 | MS.gene072556:intron | 15.0% |
| !!! | TTTATGTTGGTTAAAAATAT+GGG | - | chr7.3:4409934-4409953 | MS.gene072556:CDS | 15.0% |
| !!! | TTTTATGTTGGTTAAAAATA+TGG | - | chr7.3:4409933-4409952 | MS.gene072556:CDS | 15.0% |
| !! | AACGAAAAGATTAATCATAT+AGG | + | chr7.3:4409888-4409907 | None:intergenic | 20.0% |
| !! | AATATTGTAATGTCTAGAAA+AGG | + | chr7.3:4409695-4409714 | None:intergenic | 20.0% |
| !! | ACTTACCTAATAATAATTAG+GGG | + | chr7.3:4410979-4410998 | None:intergenic | 20.0% |
| !! | ATATTGTAATGTCTAGAAAA+GGG | + | chr7.3:4409694-4409713 | None:intergenic | 20.0% |
| !! | ATCAAAAAGATTATCCATAT+AGG | + | chr7.3:4410388-4410407 | None:intergenic | 20.0% |
| !! | CAAATCTGTAAATATCAAAA+TGG | + | chr7.3:4410735-4410754 | None:intergenic | 20.0% |
| !! | CAACTTACCTAATAATAATT+AGG | + | chr7.3:4410981-4411000 | None:intergenic | 20.0% |
| !! | CATAACTGTGTTATATATTA+GGG | - | chr7.3:4409796-4409815 | MS.gene072556:intron | 20.0% |
| !! | GATTTAATAATGTATATTGC+AGG | - | chr7.3:4410431-4410450 | MS.gene072556:intron | 20.0% |
| !! | TCAATTAGAATACAAAATCT+TGG | - | chr7.3:4411822-4411841 | MS.gene072556:intron | 20.0% |
| !! | TCATAACTGTGTTATATATT+AGG | - | chr7.3:4409795-4409814 | MS.gene072556:intron | 20.0% |
| !! | TTAACCAACATAAAATCTAA+AGG | + | chr7.3:4409928-4409947 | None:intergenic | 20.0% |
| !!! | AACTTTGCTTGTTAAAAATA+TGG | - | chr7.3:4409464-4409483 | MS.gene072556:intron | 20.0% |
| !!! | ACTTTGCTTGTTAAAAATAT+GGG | - | chr7.3:4409465-4409484 | MS.gene072556:intron | 20.0% |
| !!! | ATTTTATGTTGTAGACTTTT+AGG | - | chr7.3:4409135-4409154 | MS.gene072556:intron | 20.0% |
| !!! | CATTTTGATATTTACAGATT+TGG | - | chr7.3:4410733-4410752 | MS.gene072556:intron | 20.0% |
| !!! | TCTTTTTCCAAATTATATGT+GGG | - | chr7.3:4410057-4410076 | MS.gene072556:intron | 20.0% |
| !!! | TTTTTTCAGATTTTGATGAA+AGG | - | chr7.3:4411699-4411718 | MS.gene072556:CDS | 20.0% |
| ! | AAAATTCAATTTCCACACTA+AGG | + | chr7.3:4411676-4411695 | None:intergenic | 25.0% |
| ! | AAACCATCGACAATAAATAT+TGG | + | chr7.3:4408526-4408545 | None:intergenic | 25.0% |
| ! | AACCATCGACAATAAATATT+GGG | + | chr7.3:4408525-4408544 | None:intergenic | 25.0% |
| ! | AACTACTTGGATCATATTAA+TGG | - | chr7.3:4410501-4410520 | MS.gene072556:intron | 25.0% |
| ! | AAGAAACTGTAATCTGAATA+CGG | + | chr7.3:4411798-4411817 | None:intergenic | 25.0% |
| ! | AATAAAAATCAAGTACCTGT+TGG | + | chr7.3:4409273-4409292 | None:intergenic | 25.0% |
| ! | AATAAAGCTTCTACAATTTC+AGG | + | chr7.3:4411455-4411474 | None:intergenic | 25.0% |
| ! | ACTTTAATGTCCATTATTCT+TGG | - | chr7.3:4411429-4411448 | MS.gene072556:intron | 25.0% |
| ! | ATATTGCAATGTCTAGAAAA+AGG | + | chr7.3:4410194-4410213 | None:intergenic | 25.0% |
| ! | ATTAGAATTCATAGACTAGA+AGG | + | chr7.3:4411144-4411163 | None:intergenic | 25.0% |
| ! | CATAACTCTGTTATATATCA+GGG | - | chr7.3:4410296-4410315 | MS.gene072556:intron | 25.0% |
| ! | CATGTTGAAATTTCAAATGT+TGG | - | chr7.3:4411611-4411630 | MS.gene072556:intron | 25.0% |
| ! | TATTGCAATGTCTAGAAAAA+GGG | + | chr7.3:4410193-4410212 | None:intergenic | 25.0% |
| ! | TCATAACTCTGTTATATATC+AGG | - | chr7.3:4410295-4410314 | MS.gene072556:intron | 25.0% |
| ! | TCATAATCTCTATGTTTCAA+TGG | + | chr7.3:4408859-4408878 | None:intergenic | 25.0% |
| ! | TTCTAGTCTATGAATTCTAA+TGG | - | chr7.3:4411143-4411162 | MS.gene072556:intron | 25.0% |
| !! | AAAAACTCAGGTATGTTTTA+AGG | - | chr7.3:4408903-4408922 | MS.gene072556:intron | 25.0% |
| !! | AGTACCTTTAGATTTTATGT+TGG | - | chr7.3:4409921-4409940 | MS.gene072556:CDS | 25.0% |
| !! | CTCTTTTTCCAAATTATATG+TGG | - | chr7.3:4410056-4410075 | MS.gene072556:intron | 25.0% |
| !! | TGTGAAATTAGTTTACCTTT+AGG | + | chr7.3:4408705-4408724 | None:intergenic | 25.0% |
| !!! | ATAGCCTTTATTTCTTTTGT+TGG | - | chr7.3:4409385-4409404 | MS.gene072556:intron | 25.0% |
| !!! | ATCACTTTTAGAAAGATAGA+TGG | + | chr7.3:4411932-4411951 | None:intergenic | 25.0% |
| !!! | GTATTTGTGTACTTTGAAAT+TGG | - | chr7.3:4409295-4409314 | MS.gene072556:intron | 25.0% |
| !!! | TAATTTGATTCGGTTGAATT+AGG | - | chr7.3:4408581-4408600 | MS.gene072556:intron | 25.0% |
| !!! | TAGCCTTTATTTCTTTTGTT+GGG | - | chr7.3:4409386-4409405 | MS.gene072556:intron | 25.0% |
| !!! | TATGTTTGCTTTTTTGAGTT+TGG | - | chr7.3:4409098-4409117 | MS.gene072556:intron | 25.0% |
| !!! | TCGTATTTTTGAATACTTCT+AGG | - | chr7.3:4411563-4411582 | MS.gene072556:intron | 25.0% |
| AATAATAATTAGGGGAGAGA+AGG | + | chr7.3:4410971-4410990 | None:intergenic | 30.0% | |
| AATCTCCTTAATTGAAAGGT+CGG | + | chr7.3:4411481-4411500 | None:intergenic | 30.0% | |
| AGAAACCAAATGACACATAA+TGG | + | chr7.3:4411240-4411259 | None:intergenic | 30.0% | |
| AGTGAATGTCAAGGATTTAT+AGG | - | chr7.3:4409010-4409029 | MS.gene072556:intron | 30.0% | |
| ATAATAATTAGGGGAGAGAA+GGG | + | chr7.3:4410970-4410989 | None:intergenic | 30.0% | |
| ATAGGTTTCTTCTCTAGTAT+GGG | - | chr7.3:4411087-4411106 | MS.gene072556:intron | 30.0% | |
| ATCCCAATATTTATTGTCGA+TGG | - | chr7.3:4408520-4408539 | MS.gene072556:CDS | 30.0% | |
| ATTAAAACAGCAACAAGAAG+AGG | - | chr7.3:4411724-4411743 | MS.gene072556:CDS | 30.0% | |
| CAACTCTCTTCTATTATCTT+AGG | + | chr7.3:4411384-4411403 | None:intergenic | 30.0% | |
| CCCACATATAATTTGGAAAA+CGG | + | chr7.3:4409594-4409613 | None:intergenic | 30.0% | |
| CTAAGATAATAGAAGAGAGT+TGG | - | chr7.3:4411382-4411401 | MS.gene072556:intron | 30.0% | |
| GATCAATCTCCTTAATTGAA+AGG | + | chr7.3:4411485-4411504 | None:intergenic | 30.0% | |
| GGTTTGAAAATCTGAAGAAA+CGG | - | chr7.3:4411324-4411343 | MS.gene072556:CDS | 30.0% | |
| TAAATCCTTGACATTCACTT+AGG | + | chr7.3:4409009-4409028 | None:intergenic | 30.0% | |
| TAAATCTTTGTGATGAATGC+AGG | - | chr7.3:4411292-4411311 | MS.gene072556:intron | 30.0% | |
| TAATAATGTATATTGCAGGC+TGG | - | chr7.3:4410435-4410454 | MS.gene072556:intron | 30.0% | |
| TCAAGCAATGTCAAAGATAA+TGG | + | chr7.3:4411176-4411195 | None:intergenic | 30.0% | |
| TCGGGAAAAGAAAAAAGAAA+AGG | - | chr7.3:4411766-4411785 | MS.gene072556:intron | 30.0% | |
| TCTCTCCCCTAATTATTATT+AGG | - | chr7.3:4410971-4410990 | MS.gene072556:intron | 30.0% | |
| TTGGAAAAAGAGAACTTTCA+GGG | + | chr7.3:4410048-4410067 | None:intergenic | 30.0% | |
| TTGTGATATTAATTGTCTCG+TGG | - | chr7.3:4410163-4410182 | MS.gene072556:intron | 30.0% | |
| TTGTGATTTCAATTGTCTTG+TGG | - | chr7.3:4409664-4409683 | MS.gene072556:intron | 30.0% | |
| TTTGGAAAAAGAGAACTTTC+AGG | + | chr7.3:4410049-4410068 | None:intergenic | 30.0% | |
| ! | ACCGTTTTCCAAATTATATG+TGG | - | chr7.3:4409590-4409609 | MS.gene072556:intron | 30.0% |
| ! | AGAAACGTATGTAGTCTTTT+TGG | - | chr7.3:4410526-4410545 | MS.gene072556:intron | 30.0% |
| ! | ATGTCAAAGATAATGGCATA+TGG | + | chr7.3:4411169-4411188 | None:intergenic | 30.0% |
| ! | CAATTTTTGCATTCAGAAGA+AGG | - | chr7.3:4412011-4412030 | MS.gene072556:intron | 30.0% |
| ! | CCGTTTTCCAAATTATATGT+GGG | - | chr7.3:4409591-4409610 | MS.gene072556:intron | 30.0% |
| !! | ACCTGATATCACTTTTATAG+AGG | + | chr7.3:4410760-4410779 | None:intergenic | 30.0% |
| !! | AGCCTTTATTTCTTTTGTTG+GGG | - | chr7.3:4409387-4409406 | MS.gene072556:intron | 30.0% |
| !! | TTAATTGCTGCTTTGTGAAA+AGG | + | chr7.3:4411983-4412002 | None:intergenic | 30.0% |
| !!! | TCTTTTTATTTTCAGAACCC+AGG | + | chr7.3:4410783-4410802 | None:intergenic | 30.0% |
| AATAACCATGAGCAAAGTGA+CGG | + | chr7.3:4410594-4410613 | None:intergenic | 35.0% | |
| AATTGAACTTACACTGTTGC+TGG | + | chr7.3:4408495-4408514 | None:intergenic | 35.0% | |
| ATAAAAGTGATATCAGGTCC+TGG | - | chr7.3:4410762-4410781 | MS.gene072556:intron | 35.0% | |
| ATCACAAAAAACACAGCCAA+TGG | + | chr7.3:4409651-4409670 | None:intergenic | 35.0% | |
| CAATTTCAGGCCAAGAATAA+TGG | + | chr7.3:4411442-4411461 | None:intergenic | 35.0% | |
| CACAGGAATTTGGAAAACTT+TGG | + | chr7.3:4409978-4409997 | None:intergenic | 35.0% | |
| CATAGGTTTCTTCTCTAGTA+TGG | - | chr7.3:4411086-4411105 | MS.gene072556:intron | 35.0% | |
| CTCCCCAACAAAAGAAATAA+AGG | + | chr7.3:4409392-4409411 | None:intergenic | 35.0% | |
| GAAGAGAAAGCAAAACCTAA+AGG | - | chr7.3:4408687-4408706 | MS.gene072556:intron | 35.0% | |
| GATTATCCATATAGGATCCT+TGG | + | chr7.3:4410380-4410399 | None:intergenic | 35.0% | |
| GATTTATAACTGTCATGCAG+AGG | + | chr7.3:4411278-4411297 | None:intergenic | 35.0% | |
| GCCTCTATAAAAGTGATATC+AGG | - | chr7.3:4410756-4410775 | MS.gene072556:intron | 35.0% | |
| TAAAAGTGATATCAGGTCCT+GGG | - | chr7.3:4410763-4410782 | MS.gene072556:intron | 35.0% | |
| TCAAACAGGTACAGTGATAT+AGG | - | chr7.3:4410676-4410695 | MS.gene072556:intron | 35.0% | |
| TGAACGGTATGAACAAATCT+TGG | + | chr7.3:4409187-4409206 | None:intergenic | 35.0% | |
| TGTCTGGATTTCTTTCTTTC+AGG | - | chr7.3:4408929-4408948 | MS.gene072556:intron | 35.0% | |
| TTAAGCTGTGTATCCAAACA+GGG | - | chr7.3:4408983-4409002 | MS.gene072556:intron | 35.0% | |
| TTCAACCGACCTTTCAATTA+AGG | - | chr7.3:4411473-4411492 | MS.gene072556:intron | 35.0% | |
| TTCCAAATTATATGTGGGCA+AGG | - | chr7.3:4409596-4409615 | MS.gene072556:intron | 35.0% | |
| ! | ATCACTTGCTTGATCTTTTC+GGG | + | chr7.3:4409622-4409641 | None:intergenic | 35.0% |
| ! | CAAAGTTTTCCAAATACCTG+TGG | - | chr7.3:4409507-4409526 | MS.gene072556:intron | 35.0% |
| ! | CAAAGTTTTCCAAATTCCTG+TGG | - | chr7.3:4409976-4409995 | MS.gene072556:intron | 35.0% |
| ! | GATATCGTGTCATATTTTGC+AGG | - | chr7.3:4409222-4409241 | MS.gene072556:CDS | 35.0% |
| ! | GATCACTTGCTTGATCTTTT+CGG | + | chr7.3:4409623-4409642 | None:intergenic | 35.0% |
| ! | GTGTTCCATTATGTGTCATT+TGG | - | chr7.3:4411232-4411251 | MS.gene072556:intron | 35.0% |
| ! | TATTTTGCAGGTTGTAACAC+CGG | - | chr7.3:4409234-4409253 | MS.gene072556:CDS | 35.0% |
| !! | CTTTATTTCTTTTGTTGGGG+AGG | - | chr7.3:4409390-4409409 | MS.gene072556:intron | 35.0% |
| AGCAAGTGATCTTTCACCAT+TGG | - | chr7.3:4409632-4409651 | MS.gene072556:intron | 40.0% | |
| AGCAGTAGAAGAACCTGAAA+TGG | - | chr7.3:4412035-4412054 | MS.gene072556:intron | 40.0% | |
| AGGCTATCAAGAGAGTAAAG+AGG | + | chr7.3:4409372-4409391 | None:intergenic | 40.0% | |
| ATATATAGGTAGAGGTCCTC+CGG | - | chr7.3:4408822-4408841 | MS.gene072556:CDS | 40.0% | |
| ATCAGAGAGCTAGACAGAAA+TGG | + | chr7.3:4411869-4411888 | None:intergenic | 40.0% | |
| ATCATATAGGATCCTTCGCA+AGG | + | chr7.3:4409875-4409894 | None:intergenic | 40.0% | |
| GAGAAGAAACCTATGAGATG+AGG | + | chr7.3:4411081-4411100 | None:intergenic | 40.0% | |
| GAGAAGAAGCCTATAAGATG+AGG | + | chr7.3:4411042-4411061 | None:intergenic | 40.0% | |
| GGACTTGCCCACATATAATT+TGG | + | chr7.3:4410067-4410086 | None:intergenic | 40.0% | |
| GTTAAGCTGTGTATCCAAAC+AGG | - | chr7.3:4408982-4409001 | MS.gene072556:intron | 40.0% | |
| TAATGGAACACATGCATGCA+TGG | + | chr7.3:4411223-4411242 | None:intergenic | 40.0% | |
| TCAGAGAGCTAGACAGAAAT+GGG | + | chr7.3:4411868-4411887 | None:intergenic | 40.0% | |
| TGAACGTTCTTCTCTCAAAC+AGG | - | chr7.3:4410662-4410681 | MS.gene072556:intron | 40.0% | |
| TGACAGAACATCAAAGTGTG+TGG | + | chr7.3:4411653-4411672 | None:intergenic | 40.0% | |
| TGCAACTTATGTAGCACCAT+TGG | - | chr7.3:4410409-4410428 | MS.gene072556:intron | 40.0% | |
| TGGAAAACGGTGAACTTTCA+TGG | + | chr7.3:4409581-4409600 | None:intergenic | 40.0% | |
| TGGAATCAGTTGGGACATTA+GGG | + | chr7.3:4410835-4410854 | None:intergenic | 40.0% | |
| TTGCATCTCATAGTCTGATC+TGG | - | chr7.3:4410998-4411017 | MS.gene072556:intron | 40.0% | |
| TTTGTGATGAATGCAGGTTC+AGG | - | chr7.3:4411298-4411317 | MS.gene072556:intron | 40.0% | |
| ! | ATACCTGAGTTTTTCCCAAG+CGG | + | chr7.3:4408897-4408916 | None:intergenic | 40.0% |
| !! | AAAGCTTTGGCTGTGTTTTG+TGG | - | chr7.3:4410133-4410152 | MS.gene072556:intron | 40.0% |
| !! | AAGCTTTGGCTGTGTTTTGT+GGG | - | chr7.3:4410134-4410153 | MS.gene072556:intron | 40.0% |
| !! | GTTGTAGACTTTTAGGTCGT+GGG | - | chr7.3:4409142-4409161 | MS.gene072556:intron | 40.0% |
| !! | TGAACAAATCTTGGTGCTAG+TGG | + | chr7.3:4409178-4409197 | None:intergenic | 40.0% |
| !! | TGATTTTGACAACCTTGCCA+AGG | - | chr7.3:4410360-4410379 | MS.gene072556:intron | 40.0% |
| !! | TGATTTTGACAACCTTGCGA+AGG | - | chr7.3:4409860-4409879 | MS.gene072556:intron | 40.0% |
| !! | TGTTGTAGACTTTTAGGTCG+TGG | - | chr7.3:4409141-4409160 | MS.gene072556:intron | 40.0% |
| !! | TTGTAGACTTTTAGGTCGTG+GGG | - | chr7.3:4409143-4409162 | MS.gene072556:intron | 40.0% |
| !!! | GTATGTTTTAAGGCTCTGTC+TGG | - | chr7.3:4408913-4408932 | MS.gene072556:intron | 40.0% |
| AAAACCTCCAAACCCCATCA+AGG | + | chr7.3:4412076-4412095 | None:intergenic | 45.0% | |
| AAGAAAGAAAGCGACTGCGT+CGG | - | chr7.3:4411747-4411766 | MS.gene072556:intron | 45.0% | |
| AATACCTGTGGACTTGTCAG+TGG | - | chr7.3:4409519-4409538 | MS.gene072556:intron | 45.0% | |
| ACATTCACTTAGGCCCTGTT+TGG | + | chr7.3:4408999-4409018 | None:intergenic | 45.0% | |
| ACCTTGCCAAGGATCCTATA+TGG | - | chr7.3:4410371-4410390 | MS.gene072556:intron | 45.0% | |
| AGAAATGGGAGGAGAGAGAA+AGG | + | chr7.3:4411854-4411873 | None:intergenic | 45.0% | |
| AGCGAGTGATCTTTCACCAT+TGG | - | chr7.3:4410098-4410117 | MS.gene072556:CDS | 45.0% | |
| AGCTGAATGGTGCAGATTCA+AGG | + | chr7.3:4411113-4411132 | None:intergenic | 45.0% | |
| ATACCTGTGGACTTGTCAGT+GGG | - | chr7.3:4409520-4409539 | MS.gene072556:intron | 45.0% | |
| ATGGGATGAGAAGAGAGGAA+GGG | + | chr7.3:4410863-4410882 | None:intergenic | 45.0% | |
| ATGGTGAAAGATCACTCGCT+TGG | + | chr7.3:4410098-4410117 | None:intergenic | 45.0% | |
| ATGTAGCTGATCCCACTTAG+TGG | - | chr7.3:4409037-4409056 | MS.gene072556:intron | 45.0% | |
| CAAGCCATATCCCACTAAGT+GGG | + | chr7.3:4409051-4409070 | None:intergenic | 45.0% | |
| CCAAATTCCTGTGGACTTGT+CGG | - | chr7.3:4409985-4410004 | MS.gene072556:intron | 45.0% | |
| CTAGGAAGCTTTACAGAGCA+AGG | - | chr7.3:4411353-4411372 | MS.gene072556:intron | 45.0% | |
| CTCTCATCAGTACAGCTGAA+CGG | + | chr7.3:4409203-4409222 | None:intergenic | 45.0% | |
| CTGAAGAAACGGAAAGACCT+AGG | - | chr7.3:4411335-4411354 | MS.gene072556:intron | 45.0% | |
| CTGACAAGTCCACAGGTATT+TGG | + | chr7.3:4409519-4409538 | None:intergenic | 45.0% | |
| CTGGAATCAGTTGGGACATT+AGG | + | chr7.3:4410836-4410855 | None:intergenic | 45.0% | |
| CTTGCTCTGTAAAGCTTCCT+AGG | + | chr7.3:4411355-4411374 | None:intergenic | 45.0% | |
| CTTTGTGAATGCTCTGCCAA+TGG | + | chr7.3:4410117-4410136 | None:intergenic | 45.0% | |
| GAACATCAAAGTGTGTGGAC+TGG | + | chr7.3:4411648-4411667 | None:intergenic | 45.0% | |
| GAAGGACTCAGCAAACTACT+TGG | - | chr7.3:4410488-4410507 | MS.gene072556:intron | 45.0% | |
| GAAGGCTGTCTTAAGCTGAA+TGG | + | chr7.3:4411126-4411145 | None:intergenic | 45.0% | |
| GATGAATGCAGGTTCAGGAA+CGG | - | chr7.3:4411303-4411322 | MS.gene072556:intron | 45.0% | |
| GATGTTCTGTCACCTTAGTG+TGG | - | chr7.3:4411661-4411680 | MS.gene072556:intron | 45.0% | |
| GGCCTTGCCCACATATAATT+TGG | + | chr7.3:4409601-4409620 | None:intergenic | 45.0% | |
| TATGGATGGGATGAGAAGAG+AGG | + | chr7.3:4410868-4410887 | None:intergenic | 45.0% | |
| TCAGGCTATCTGCTGCTATA+AGG | - | chr7.3:4408947-4408966 | MS.gene072556:intron | 45.0% | |
| TCCATATAGGATCCTTGGCA+AGG | + | chr7.3:4410375-4410394 | None:intergenic | 45.0% | |
| TGAACTTACACTGTTGCTGG+TGG | + | chr7.3:4408492-4408511 | None:intergenic | 45.0% | |
| TGATCCCACTTAGTGGGATA+TGG | - | chr7.3:4409044-4409063 | MS.gene072556:intron | 45.0% | |
| TGGGCACACTCTAATTGTCT+AGG | + | chr7.3:4410810-4410829 | None:intergenic | 45.0% | |
| TGTAGCTGATCCCACTTAGT+GGG | - | chr7.3:4409038-4409057 | MS.gene072556:intron | 45.0% | |
| ! | AATTGCCGTCACTTTGCTCA+TGG | - | chr7.3:4410586-4410605 | MS.gene072556:intron | 45.0% |
| ! | GCAGAGCATTCACAAAGCTT+TGG | - | chr7.3:4410120-4410139 | MS.gene072556:CDS | 45.0% |
| ! | TACCTGAGTTTTTCCCAAGC+GGG | + | chr7.3:4408896-4408915 | None:intergenic | 45.0% |
| ! | TGATGGGGTTTGGAGGTTTT+CGG | - | chr7.3:4412076-4412095 | MS.gene072556:intron | 45.0% |
| ! | TTTTTCCCAAGCGGGATTCA+AGG | + | chr7.3:4408888-4408907 | None:intergenic | 45.0% |
| !! | ACAAATCTTGGTGCTAGTGG+AGG | + | chr7.3:4409175-4409194 | None:intergenic | 45.0% |
| !! | ATCACTCGCTTGGTCTTTTC+GGG | + | chr7.3:4410088-4410107 | None:intergenic | 45.0% |
| !! | GATCACTCGCTTGGTCTTTT+CGG | + | chr7.3:4410089-4410108 | None:intergenic | 45.0% |
| !! | TCAAGTACCTGTTGGCTTAG+TGG | + | chr7.3:4409265-4409284 | None:intergenic | 45.0% |
| !! | TTCTTTTGTTGGGGAGGTGT+TGG | - | chr7.3:4409396-4409415 | MS.gene072556:intron | 45.0% |
| !!! | TCTTTTGTTGGGGAGGTGTT+GGG | - | chr7.3:4409397-4409416 | MS.gene072556:intron | 45.0% |
| AAGGGTAGGCTGGAATCAGT+TGG | + | chr7.3:4410845-4410864 | None:intergenic | 50.0% | |
| AATTCCTGTGGACTTGTCGG+TGG | - | chr7.3:4409988-4410007 | MS.gene072556:intron | 50.0% | |
| AGAAAGAAAGCGACTGCGTC+GGG | - | chr7.3:4411748-4411767 | MS.gene072556:intron | 50.0% | |
| AGGGTAGGCTGGAATCAGTT+GGG | + | chr7.3:4410844-4410863 | None:intergenic | 50.0% | |
| AGTAGACCTTGAATCCCGCT+TGG | - | chr7.3:4408879-4408898 | MS.gene072556:intron | 50.0% | |
| AGTTTGTGAGTGCGTGGTGA+AGG | - | chr7.3:4410470-4410489 | MS.gene072556:intron | 50.0% | |
| ATAAGATGAGGCCCAAGAGG+AGG | + | chr7.3:4411030-4411049 | None:intergenic | 50.0% | |
| ATCCCGCTTGGGAAAAACTC+AGG | - | chr7.3:4408891-4408910 | MS.gene072556:intron | 50.0% | |
| ATTCCTGTGGACTTGTCGGT+GGG | - | chr7.3:4409989-4410008 | MS.gene072556:intron | 50.0% | |
| ATTCGGTTGAATTAGGCCGC+TGG | - | chr7.3:4408588-4408607 | MS.gene072556:intron | 50.0% | |
| CAGGGCCTAAGTGAATGTCA+AGG | - | chr7.3:4409001-4409020 | MS.gene072556:intron | 50.0% | |
| CAGTTGGGACATTAGGGACT+GGG | + | chr7.3:4410829-4410848 | None:intergenic | 50.0% | |
| CCAAGCCATATCCCACTAAG+TGG | + | chr7.3:4409052-4409071 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATATGGCT+TGG | - | chr7.3:4409049-4409068 | MS.gene072556:intron | 50.0% | |
| CCGACAAGTCCACAGGAATT+TGG | + | chr7.3:4409988-4410007 | None:intergenic | 50.0% | |
| CCTATAAGATGAGGCCCAAG+AGG | + | chr7.3:4411033-4411052 | None:intergenic | 50.0% | |
| CCTCTTGGGCCTCATCTTAT+AGG | - | chr7.3:4411030-4411049 | MS.gene072556:intron | 50.0% | |
| GAATGTGTTGTCAACCCCAG+CGG | + | chr7.3:4408607-4408626 | None:intergenic | 50.0% | |
| GAGAGCTAGACAGAAATGGG+AGG | + | chr7.3:4411865-4411884 | None:intergenic | 50.0% | |
| GATGAGAAGAGAGGAAGGGT+AGG | + | chr7.3:4410859-4410878 | None:intergenic | 50.0% | |
| GATGGGATGAGAAGAGAGGA+AGG | + | chr7.3:4410864-4410883 | None:intergenic | 50.0% | |
| GCAACGTCAGGATCCATTTC+AGG | + | chr7.3:4412051-4412070 | None:intergenic | 50.0% | |
| GTAGACCTTGAATCCCGCTT+GGG | - | chr7.3:4408880-4408899 | MS.gene072556:intron | 50.0% | |
| TAAGATGAGGCCCAAGAGGA+GGG | + | chr7.3:4411029-4411048 | None:intergenic | 50.0% | |
| TAGAGTAGAGAGGACGTGTG+TGG | + | chr7.3:4410926-4410945 | None:intergenic | 50.0% | |
| TCAGTTGGGACATTAGGGAC+TGG | + | chr7.3:4410830-4410849 | None:intergenic | 50.0% | |
| TCCTAGAGGCTAGAGTAGAG+AGG | + | chr7.3:4410936-4410955 | None:intergenic | 50.0% | |
| TCCTCTCTACTCTAGCCTCT+AGG | - | chr7.3:4410932-4410951 | MS.gene072556:intron | 50.0% | |
| TCTTCTCTAGCCCTCCTCTT+GGG | - | chr7.3:4411055-4411074 | MS.gene072556:intron | 50.0% | |
| TTCAATGGCTTCCTCTGCAC+CGG | + | chr7.3:4408844-4408863 | None:intergenic | 50.0% | |
| TTCGGTTGAATTAGGCCGCT+GGG | - | chr7.3:4408589-4408608 | MS.gene072556:intron | 50.0% | |
| TTCTTCTCTAGCCCTCCTCT+TGG | - | chr7.3:4411054-4411073 | MS.gene072556:intron | 50.0% | |
| ! | AGAGAGAGGGAGAGAGCATA+TGG | + | chr7.3:4410886-4410905 | None:intergenic | 50.0% |
| ! | AGAGGGAGAGAGCATATGGA+TGG | + | chr7.3:4410882-4410901 | None:intergenic | 50.0% |
| ! | GAGGGAGAGAGCATATGGAT+GGG | + | chr7.3:4410881-4410900 | None:intergenic | 50.0% |
| ! | TTCCACAGATCAGAGAGCGT+TGG | - | chr7.3:4410623-4410642 | MS.gene072556:intron | 50.0% |
| !! | TCCACAGATCAGAGAGCGTT+GGG | - | chr7.3:4410624-4410643 | MS.gene072556:intron | 50.0% |
| !! | TGTTGGCTTAGTGGTGCAAC+CGG | + | chr7.3:4409256-4409275 | None:intergenic | 50.0% |
| AAGATGAGGCCCAAGAGGAG+GGG | + | chr7.3:4411028-4411047 | None:intergenic | 55.0% | |
| AGAAGAGAGGAAGGGTAGGC+TGG | + | chr7.3:4410855-4410874 | None:intergenic | 55.0% | |
| ATGAGATGAGGCCCAAGAGG+AGG | + | chr7.3:4411069-4411088 | None:intergenic | 55.0% | |
| CCTATGAGATGAGGCCCAAG+AGG | + | chr7.3:4411072-4411091 | None:intergenic | 55.0% | |
| CCTCTTGGGCCTCATCTCAT+AGG | - | chr7.3:4411069-4411088 | MS.gene072556:intron | 55.0% | |
| CCTGACGTTGCTGCCTTGAT+GGG | - | chr7.3:4412060-4412079 | MS.gene072556:intron | 55.0% | |
| CTGACGTTGCTGCCTTGATG+GGG | - | chr7.3:4412061-4412080 | MS.gene072556:intron | 55.0% | |
| CTGCTCAGTTTGTGAGTGCG+TGG | - | chr7.3:4410464-4410483 | MS.gene072556:intron | 55.0% | |
| GGGTGTGACTCGTTTCCTAG+AGG | + | chr7.3:4410950-4410969 | None:intergenic | 55.0% | |
| GGTTGCACCACTAAGCCAAC+AGG | - | chr7.3:4409255-4409274 | MS.gene072556:CDS | 55.0% | |
| GTACCCACTGACAAGTCCAC+AGG | + | chr7.3:4409526-4409545 | None:intergenic | 55.0% | |
| GTTGCTGCCTTGATGGGGTT+TGG | - | chr7.3:4412066-4412085 | MS.gene072556:intron | 55.0% | |
| TCCTGACGTTGCTGCCTTGA+TGG | - | chr7.3:4412059-4412078 | MS.gene072556:intron | 55.0% | |
| TCGGTTGAATTAGGCCGCTG+GGG | - | chr7.3:4408590-4408609 | MS.gene072556:intron | 55.0% | |
| TGAGATGAGGCCCAAGAGGA+GGG | + | chr7.3:4411068-4411087 | None:intergenic | 55.0% | |
| TGCACTGTGGGAGAGAGAGA+GGG | + | chr7.3:4410899-4410918 | None:intergenic | 55.0% | |
| !! | GGGGAGGTGTTGGGACTTAT+GGG | - | chr7.3:4409406-4409425 | MS.gene072556:intron | 55.0% |
| !! | TGGGGAGGTGTTGGGACTTA+TGG | - | chr7.3:4409405-4409424 | MS.gene072556:intron | 55.0% |
| AATGGCTTCCTCTGCACCGG+AGG | + | chr7.3:4408841-4408860 | None:intergenic | 60.0% | |
| CCCATCAAGGCAGCAACGTC+AGG | + | chr7.3:4412063-4412082 | None:intergenic | 60.0% | |
| GCCCAACGCTCTCTGATCTG+TGG | + | chr7.3:4410628-4410647 | None:intergenic | 60.0% | |
| GCTGCCTTGATGGGGTTTGG+AGG | - | chr7.3:4412069-4412088 | MS.gene072556:intron | 60.0% | |
| GTACCCACCGACAAGTCCAC+AGG | + | chr7.3:4409995-4410014 | None:intergenic | 60.0% | |
| GTAGAGAGGACGTGTGTGGC+AGG | + | chr7.3:4410922-4410941 | None:intergenic | 60.0% | |
| GTGCACTGTGGGAGAGAGAG+AGG | + | chr7.3:4410900-4410919 | None:intergenic | 60.0% | |
| GTGTGTGGCAGGTGCACTGT+GGG | + | chr7.3:4410911-4410930 | None:intergenic | 60.0% | |
| TGCTCGTGAGCGTGAGAGAC+AGG | - | chr7.3:4408662-4408681 | MS.gene072556:intron | 60.0% | |
| ATCTGGCGCACCCCTCCTCT+TGG | - | chr7.3:4411015-4411034 | MS.gene072556:intron | 65.0% | |
| CGTGTGTGGCAGGTGCACTG+TGG | + | chr7.3:4410912-4410931 | None:intergenic | 65.0% | |
| GTAGAGGTCCTCCGGTGCAG+AGG | - | chr7.3:4408830-4408849 | MS.gene072556:CDS | 65.0% | |
| TCTGGCGCACCCCTCCTCTT+GGG | - | chr7.3:4411016-4411035 | MS.gene072556:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 4408479 | 4412116 | 4408479 | ID=MS.gene072556 |
| chr7.3 | mRNA | 4408479 | 4412116 | 4408479 | ID=MS.gene072556.t1;Parent=MS.gene072556 |
| chr7.3 | exon | 4412093 | 4412116 | 4412093 | ID=MS.gene072556.t1.exon1;Parent=MS.gene072556.t1 |
| chr7.3 | CDS | 4412093 | 4412116 | 4412093 | ID=cds.MS.gene072556.t1;Parent=MS.gene072556.t1 |
| chr7.3 | exon | 4411887 | 4411992 | 4411887 | ID=MS.gene072556.t1.exon2;Parent=MS.gene072556.t1 |
| chr7.3 | CDS | 4411887 | 4411992 | 4411887 | ID=cds.MS.gene072556.t1;Parent=MS.gene072556.t1 |
| chr7.3 | exon | 4411683 | 4411765 | 4411683 | ID=MS.gene072556.t1.exon3;Parent=MS.gene072556.t1 |
| chr7.3 | CDS | 4411683 | 4411765 | 4411683 | ID=cds.MS.gene072556.t1;Parent=MS.gene072556.t1 |
| chr7.3 | exon | 4411319 | 4411351 | 4411319 | ID=MS.gene072556.t1.exon4;Parent=MS.gene072556.t1 |
| chr7.3 | CDS | 4411319 | 4411351 | 4411319 | ID=cds.MS.gene072556.t1;Parent=MS.gene072556.t1 |
| chr7.3 | exon | 4410064 | 4410142 | 4410064 | ID=MS.gene072556.t1.exon5;Parent=MS.gene072556.t1 |
| chr7.3 | CDS | 4410064 | 4410142 | 4410064 | ID=cds.MS.gene072556.t1;Parent=MS.gene072556.t1 |
| chr7.3 | exon | 4409912 | 4409964 | 4409912 | ID=MS.gene072556.t1.exon6;Parent=MS.gene072556.t1 |
| chr7.3 | CDS | 4409912 | 4409964 | 4409912 | ID=cds.MS.gene072556.t1;Parent=MS.gene072556.t1 |
| chr7.3 | exon | 4409221 | 4409281 | 4409221 | ID=MS.gene072556.t1.exon7;Parent=MS.gene072556.t1 |
| chr7.3 | CDS | 4409221 | 4409281 | 4409221 | ID=cds.MS.gene072556.t1;Parent=MS.gene072556.t1 |
| chr7.3 | exon | 4408808 | 4408887 | 4408808 | ID=MS.gene072556.t1.exon8;Parent=MS.gene072556.t1 |
| chr7.3 | CDS | 4408808 | 4408887 | 4408808 | ID=cds.MS.gene072556.t1;Parent=MS.gene072556.t1 |
| chr7.3 | exon | 4408479 | 4408568 | 4408479 | ID=MS.gene072556.t1.exon9;Parent=MS.gene072556.t1 |
| chr7.3 | CDS | 4408479 | 4408568 | 4408479 | ID=cds.MS.gene072556.t1;Parent=MS.gene072556.t1 |
| Gene Sequence |
| Protein sequence |
