Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072775.t1 | XP_003611074.1 | 90.1 | 252 | 23 | 2 | 1 | 251 | 1 | 251 | 5.60E-121 | 443.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072775.t1 | G7KC16 | 90.1 | 252 | 23 | 2 | 1 | 251 | 1 | 251 | 4.0e-121 | 443.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene072775.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072775.t1 | MTR_5g010120 | 90.079 | 252 | 23 | 2 | 1 | 251 | 1 | 251 | 2.90e-158 | 439 |
MS.gene072775.t1 | MTR_8g098725 | 49.505 | 202 | 69 | 5 | 65 | 240 | 97 | 291 | 1.27e-53 | 176 |
MS.gene072775.t1 | MTR_8g098725 | 47.573 | 206 | 71 | 5 | 65 | 240 | 97 | 295 | 8.60e-52 | 171 |
MS.gene072775.t1 | MTR_2g068730 | 54.545 | 88 | 37 | 1 | 148 | 232 | 136 | 223 | 4.04e-22 | 92.4 |
MS.gene072775.t1 | MTR_2g096080 | 42.609 | 115 | 44 | 2 | 129 | 221 | 90 | 204 | 9.35e-20 | 85.9 |
MS.gene072775.t1 | MTR_1g044785 | 47.917 | 96 | 41 | 2 | 141 | 236 | 107 | 193 | 1.84e-19 | 84.3 |
MS.gene072775.t1 | MTR_1g073350 | 51.948 | 77 | 37 | 0 | 139 | 215 | 283 | 359 | 1.23e-18 | 84.7 |
MS.gene072775.t1 | MTR_4g061823 | 37.584 | 149 | 65 | 4 | 89 | 221 | 58 | 194 | 3.31e-17 | 78.6 |
MS.gene072775.t1 | MTR_4g061910 | 37.584 | 149 | 65 | 4 | 89 | 221 | 58 | 194 | 3.31e-17 | 78.6 |
MS.gene072775.t1 | MTR_1g008220 | 47.126 | 87 | 39 | 2 | 138 | 220 | 194 | 277 | 2.87e-16 | 76.6 |
MS.gene072775.t1 | MTR_3g091340 | 35.075 | 134 | 71 | 3 | 104 | 222 | 119 | 251 | 4.71e-15 | 72.8 |
MS.gene072775.t1 | MTR_3g091340 | 35.075 | 134 | 71 | 3 | 104 | 222 | 112 | 244 | 5.24e-15 | 72.8 |
MS.gene072775.t1 | MTR_3g091340 | 35.075 | 134 | 71 | 3 | 104 | 222 | 148 | 280 | 6.99e-15 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072775.t1 | AT5G41380 | 48.370 | 184 | 73 | 6 | 58 | 221 | 83 | 264 | 5.95e-40 | 140 |
MS.gene072775.t1 | AT1G63820 | 49.342 | 152 | 54 | 5 | 117 | 248 | 117 | 265 | 5.01e-35 | 127 |
MS.gene072775.t1 | AT3G12890 | 53.191 | 94 | 41 | 2 | 154 | 247 | 121 | 211 | 5.14e-21 | 89.4 |
MS.gene072775.t1 | AT1G04500 | 40.602 | 133 | 58 | 3 | 103 | 234 | 234 | 346 | 1.79e-19 | 87.0 |
MS.gene072775.t1 | AT1G04500 | 40.602 | 133 | 58 | 3 | 103 | 234 | 234 | 346 | 1.79e-19 | 87.0 |
MS.gene072775.t1 | AT1G04500 | 40.602 | 133 | 58 | 3 | 103 | 234 | 225 | 337 | 1.87e-19 | 86.7 |
MS.gene072775.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 301 | 357 | 9.98e-18 | 82.0 |
MS.gene072775.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 302 | 358 | 1.10e-17 | 82.0 |
MS.gene072775.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 290 | 346 | 1.15e-17 | 82.0 |
MS.gene072775.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 310 | 366 | 1.20e-17 | 82.0 |
MS.gene072775.t1 | AT5G59990 | 43.089 | 123 | 60 | 3 | 136 | 250 | 119 | 239 | 4.28e-16 | 75.5 |
MS.gene072775.t1 | AT4G27900 | 47.191 | 89 | 38 | 3 | 138 | 222 | 178 | 261 | 1.98e-15 | 73.9 |
MS.gene072775.t1 | AT4G27900 | 47.191 | 89 | 38 | 3 | 138 | 222 | 178 | 261 | 1.98e-15 | 73.9 |
MS.gene072775.t1 | AT5G53420 | 45.455 | 88 | 46 | 2 | 129 | 216 | 177 | 262 | 9.54e-15 | 72.4 |
MS.gene072775.t1 | AT5G53420 | 45.455 | 88 | 46 | 2 | 129 | 216 | 98 | 183 | 1.09e-14 | 70.5 |
MS.gene072775.t1 | AT5G53420 | 45.455 | 88 | 46 | 2 | 129 | 216 | 98 | 183 | 1.09e-14 | 70.5 |
MS.gene072775.t1 | AT5G53420 | 45.455 | 88 | 46 | 2 | 129 | 216 | 98 | 183 | 1.09e-14 | 70.5 |
Find 54 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCATGCCATTGGAAATT+TGG | 0.108434 | 5.3:-3844514 | None:intergenic |
ATTCATGCCATTGGAAATTT+GGG | 0.264246 | 5.3:-3844513 | None:intergenic |
ATCATCATGAAGACGAGTTC+TGG | 0.270661 | 5.3:+3845328 | MS.gene072775:CDS |
AGCTCCTCTGCATTAACTTT+TGG | 0.308354 | 5.3:-3844420 | None:intergenic |
GGATCATAAGAGACTTTGTT+TGG | 0.328174 | 5.3:-3844217 | None:intergenic |
GGAAATTTCTCTACTTTGGA+TGG | 0.338370 | 5.3:+3844346 | MS.gene072775:CDS |
ATGTAATTGAAAGGGTAATA+AGG | 0.347575 | 5.3:-3844238 | None:intergenic |
GAACTTCCTCCGGCTTCTCT+TGG | 0.364020 | 5.3:-3844923 | None:intergenic |
GCTTGGAAATTTCTCTACTT+TGG | 0.370290 | 5.3:+3844342 | MS.gene072775:CDS |
GAAGTTCAACAAGATTATTA+AGG | 0.398859 | 5.3:+3844939 | MS.gene072775:CDS |
GTGCAGTGCAGGAGATTTGC+AGG | 0.405645 | 5.3:+3844582 | MS.gene072775:CDS |
GATTGTCGGCTAGTGTCTTT+CGG | 0.419573 | 5.3:-3845224 | None:intergenic |
TAAGCTTCAGAAGGAAAATC+AGG | 0.424848 | 5.3:-3844469 | None:intergenic |
CAAAGTAGGGCGTTACAGTC+TGG | 0.426599 | 5.3:+3844867 | MS.gene072775:CDS |
ATTTAGGTTGATTTCATTGA+AGG | 0.428619 | 5.3:+3845467 | MS.gene072775:intron |
TAATCTTGTTGAACTTCCTC+CGG | 0.431668 | 5.3:-3844933 | None:intergenic |
GGGAGTCCATCTGTGTGTTA+TGG | 0.434607 | 5.3:-3844492 | None:intergenic |
TGTTTGGGCTTGAATGTGTA+TGG | 0.437969 | 5.3:-3844201 | None:intergenic |
GAAAACTGAGGAATGTCAAA+TGG | 0.438264 | 5.3:+3844378 | MS.gene072775:CDS |
GCACGCCCTTCTTATTTGTC+CGG | 0.440631 | 5.3:-3844563 | None:intergenic |
GATGAAGTAAATTTCAAAGT+AGG | 0.447619 | 5.3:+3844853 | MS.gene072775:CDS |
GATCATAAGAGACTTTGTTT+GGG | 0.454488 | 5.3:-3844216 | None:intergenic |
TCTTCTCCAACCAGTGAGCT+TGG | 0.454671 | 5.3:+3844325 | MS.gene072775:CDS |
ACGTATGCGTGTTCGATTGT+CGG | 0.459741 | 5.3:-3845238 | None:intergenic |
GAAATTTCTCTACTTTGGAT+GGG | 0.461348 | 5.3:+3844347 | MS.gene072775:CDS |
ATAAGAAGGGCGTGCAGTGC+AGG | 0.462306 | 5.3:+3844571 | MS.gene072775:CDS |
TCATCATGAAGACGAGTTCT+GGG | 0.484075 | 5.3:+3845329 | MS.gene072775:CDS |
GATCAGAACATGGCAACACC+TGG | 0.484597 | 5.3:+3844820 | MS.gene072775:intron |
CTGTTTCAATGTAATTGAAA+GGG | 0.489672 | 5.3:-3844246 | None:intergenic |
ACTGTTTCAATGTAATTGAA+AGG | 0.489675 | 5.3:-3844247 | None:intergenic |
TTTAGGTTGATTTCATTGAA+GGG | 0.494868 | 5.3:+3845468 | MS.gene072775:intron |
GGGAGCTCAATTCATGCCAT+TGG | 0.496254 | 5.3:-3844522 | None:intergenic |
GGCAACACCTGGGTCTCAAA+CGG | 0.500495 | 5.3:+3844831 | MS.gene072775:CDS |
GATATAGAGCCAAGAGAAGC+CGG | 0.504164 | 5.3:+3844914 | MS.gene072775:CDS |
ACTTCATCCGTTTGAGACCC+AGG | 0.506527 | 5.3:-3844838 | None:intergenic |
TCTTCACCGGACAAATAAGA+AGG | 0.514231 | 5.3:+3844557 | MS.gene072775:CDS |
AGAGAAATTTCCAAGCTCAC+TGG | 0.521246 | 5.3:-3844335 | None:intergenic |
ATGAAGTAAATTTCAAAGTA+GGG | 0.524782 | 5.3:+3844854 | MS.gene072775:CDS |
TTACATTGAAACAGTTCAAG+AGG | 0.535292 | 5.3:+3844255 | MS.gene072775:CDS |
CCCGAAAATAGTTTCTTCAC+CGG | 0.538362 | 5.3:+3844544 | MS.gene072775:CDS |
TGTTGGTGTGATCTTAATAG+AGG | 0.547693 | 5.3:-3845505 | None:intergenic |
AAAACTGAGGAATGTCAAAT+GGG | 0.562447 | 5.3:+3844379 | MS.gene072775:CDS |
GAAGAGGAAAATGAGTCAAG+AGG | 0.570061 | 5.3:-3844289 | None:intergenic |
AAATTTCCAAGCTCACTGGT+TGG | 0.575257 | 5.3:-3844331 | None:intergenic |
AGCTTACCATAACACACAGA+TGG | 0.590460 | 5.3:+3844486 | MS.gene072775:CDS |
TTCATGCCATTGGAAATTTG+GGG | 0.622889 | 5.3:-3844512 | None:intergenic |
CTTCACCGGACAAATAAGAA+GGG | 0.624611 | 5.3:+3844558 | MS.gene072775:CDS |
TGGACTCCCCAAATTTCCAA+TGG | 0.637971 | 5.3:+3844506 | MS.gene072775:CDS |
GTGTTATGGTAAGCTTCAGA+AGG | 0.638279 | 5.3:-3844478 | None:intergenic |
ATCAGAACATGGCAACACCT+GGG | 0.639682 | 5.3:+3844821 | MS.gene072775:intron |
GACAATCGAACACGCATACG+TGG | 0.645981 | 5.3:+3845240 | MS.gene072775:CDS |
TGGGTCTCGTTTGAAAACTG+AGG | 0.669045 | 5.3:+3844366 | MS.gene072775:CDS |
ACTACCAAAAGTTAATGCAG+AGG | 0.669632 | 5.3:+3844416 | MS.gene072775:CDS |
ATAGAGCCAAGAGAAGCCGG+AGG | 0.708071 | 5.3:+3844917 | MS.gene072775:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTCATTTTTTAAATGTA+GGG | + | chr5.3:3844704-3844723 | MS.gene072775:intron | 10.0% |
!!! | TTTAATTTTATCTGTATTAA+AGG | + | chr5.3:3844784-3844803 | MS.gene072775:intron | 10.0% |
!! | ATGATTAAATTAATACGTAT+CGG | - | chr5.3:3844686-3844705 | None:intergenic | 15.0% |
!! | ATTTAGAAACAAAAAATATG+TGG | - | chr5.3:3845154-3845173 | None:intergenic | 15.0% |
!! | TATATATAACATTATAACAG+TGG | - | chr5.3:3845040-3845059 | None:intergenic | 15.0% |
!! | TTCAGATTAAAAAATGTATA+TGG | + | chr5.3:3844657-3844676 | MS.gene072775:intron | 15.0% |
!!! | ATTTTTTGTTTCTAAATATG+TGG | + | chr5.3:3845157-3845176 | MS.gene072775:intron | 15.0% |
!!! | CATTTTCATTTTTTAAATGT+AGG | + | chr5.3:3844703-3844722 | MS.gene072775:intron | 15.0% |
!!! | TATTATTGAGGTTTTTATTT+AGG | + | chr5.3:3845451-3845470 | MS.gene072775:intron | 15.0% |
!! | AAAAAATATATGGTAAACCA+CGG | - | chr5.3:3844624-3844643 | None:intergenic | 20.0% |
!! | ACTTTACTAGTAATAATTGA+AGG | + | chr5.3:3845097-3845116 | MS.gene072775:intron | 20.0% |
!! | ATGAAGTAAATTTCAAAGTA+GGG | + | chr5.3:3844854-3844873 | MS.gene072775:CDS | 20.0% |
!! | TCAAATAATAGACATAAACA+CGG | - | chr5.3:3844738-3844757 | None:intergenic | 20.0% |
! | ACTGTTTCAATGTAATTGAA+AGG | - | chr5.3:3844250-3844269 | None:intergenic | 25.0% |
! | ATGTAATTGAAAGGGTAATA+AGG | - | chr5.3:3844241-3844260 | None:intergenic | 25.0% |
! | CTGTTTCAATGTAATTGAAA+GGG | - | chr5.3:3844249-3844268 | None:intergenic | 25.0% |
! | GAAGTTCAACAAGATTATTA+AGG | + | chr5.3:3844939-3844958 | MS.gene072775:CDS | 25.0% |
! | GATGAAGTAAATTTCAAAGT+AGG | + | chr5.3:3844853-3844872 | MS.gene072775:CDS | 25.0% |
! | TGGATGCTCAAAAAAATATA+TGG | - | chr5.3:3844634-3844653 | None:intergenic | 25.0% |
!! | ATGTGGTGTTAATATTATTG+AGG | + | chr5.3:3845439-3845458 | MS.gene072775:intron | 25.0% |
!! | GTCTATTATTTGATAGTAGA+TGG | + | chr5.3:3844745-3844764 | MS.gene072775:intron | 25.0% |
!!! | ACATTTTTTAATCTGAAGTG+TGG | - | chr5.3:3844654-3844673 | None:intergenic | 25.0% |
!!! | ATTTAGGTTGATTTCATTGA+AGG | + | chr5.3:3845467-3845486 | MS.gene072775:intron | 25.0% |
!!! | GATATTTTTTTTTCTTCCGA+GGG | - | chr5.3:3845076-3845095 | None:intergenic | 25.0% |
!!! | TCGTTTGTTGTTTTTAATTG+TGG | + | chr5.3:3845182-3845201 | MS.gene072775:intron | 25.0% |
!!! | TGATATTTTTTTTTCTTCCG+AGG | - | chr5.3:3845077-3845096 | None:intergenic | 25.0% |
!!! | TTTAGGTTGATTTCATTGAA+GGG | + | chr5.3:3845468-3845487 | MS.gene072775:intron | 25.0% |
AAAACTGAGGAATGTCAAAT+GGG | + | chr5.3:3844379-3844398 | MS.gene072775:CDS | 30.0% | |
AATTCATGCCATTGGAAATT+TGG | - | chr5.3:3844517-3844536 | None:intergenic | 30.0% | |
AGAAAAAGAAAAGAAGGAAG+AGG | - | chr5.3:3844308-3844327 | None:intergenic | 30.0% | |
ATAAAAGAAAGTTGTTCCCT+CGG | + | chr5.3:3845057-3845076 | MS.gene072775:intron | 30.0% | |
ATTCATGCCATTGGAAATTT+GGG | - | chr5.3:3844516-3844535 | None:intergenic | 30.0% | |
GAAATTTCTCTACTTTGGAT+GGG | + | chr5.3:3844347-3844366 | MS.gene072775:CDS | 30.0% | |
GTTTAATACTTGCATCAATG+TGG | + | chr5.3:3845422-3845441 | MS.gene072775:intron | 30.0% | |
TGGAGAAGAAAAAGAAAAGA+AGG | - | chr5.3:3844314-3844333 | None:intergenic | 30.0% | |
TTACATTGAAACAGTTCAAG+AGG | + | chr5.3:3844255-3844274 | MS.gene072775:CDS | 30.0% | |
! | GATCATAAGAGACTTTGTTT+GGG | - | chr5.3:3844219-3844238 | None:intergenic | 30.0% |
!!! | TTTTCTGTTTTTGAACACAC+AGG | - | chr5.3:3845306-3845325 | None:intergenic | 30.0% |
ACTACCAAAAGTTAATGCAG+AGG | + | chr5.3:3844416-3844435 | MS.gene072775:CDS | 35.0% | |
GAAAACTGAGGAATGTCAAA+TGG | + | chr5.3:3844378-3844397 | MS.gene072775:CDS | 35.0% | |
GCTGTTTATTGATCAGAACA+TGG | + | chr5.3:3844810-3844829 | MS.gene072775:intron | 35.0% | |
GCTTGGAAATTTCTCTACTT+TGG | + | chr5.3:3844342-3844361 | MS.gene072775:CDS | 35.0% | |
GGAAATTTCTCTACTTTGGA+TGG | + | chr5.3:3844346-3844365 | MS.gene072775:CDS | 35.0% | |
GGATCATAAGAGACTTTGTT+TGG | - | chr5.3:3844220-3844239 | None:intergenic | 35.0% | |
GTTAAAATAACCTAACACCG+TGG | + | chr5.3:3844604-3844623 | MS.gene072775:intron | 35.0% | |
TAAGCTTCAGAAGGAAAATC+AGG | - | chr5.3:3844472-3844491 | None:intergenic | 35.0% | |
TAATCTTGTTGAACTTCCTC+CGG | - | chr5.3:3844936-3844955 | None:intergenic | 35.0% | |
TTCATGCCATTGGAAATTTG+GGG | - | chr5.3:3844515-3844534 | None:intergenic | 35.0% | |
! | GTTTTTGAACACACAGGTTT+TGG | - | chr5.3:3845300-3845319 | None:intergenic | 35.0% |
! | TCCGGTGAAGAAACTATTTT+CGG | - | chr5.3:3844548-3844567 | None:intergenic | 35.0% |
!! | CTGCATTAACTTTTGGTAGT+AGG | - | chr5.3:3844416-3844435 | None:intergenic | 35.0% |
AAATTTCCAAGCTCACTGGT+TGG | - | chr5.3:3844334-3844353 | None:intergenic | 40.0% | |
AGAGAAATTTCCAAGCTCAC+TGG | - | chr5.3:3844338-3844357 | None:intergenic | 40.0% | |
AGCTTACCATAACACACAGA+TGG | + | chr5.3:3844486-3844505 | MS.gene072775:CDS | 40.0% | |
AGTTCAGATATGCTCCTTTC+AGG | - | chr5.3:3845011-3845030 | None:intergenic | 40.0% | |
ATATGGTAAACCACGGTGTT+AGG | - | chr5.3:3844617-3844636 | None:intergenic | 40.0% | |
ATCATCATGAAGACGAGTTC+TGG | + | chr5.3:3845328-3845347 | MS.gene072775:CDS | 40.0% | |
ATGCTCCAACATTACCTGAA+AGG | + | chr5.3:3844994-3845013 | MS.gene072775:intron | 40.0% | |
CCCGAAAATAGTTTCTTCAC+CGG | + | chr5.3:3844544-3844563 | MS.gene072775:CDS | 40.0% | |
CTTCACCGGACAAATAAGAA+GGG | + | chr5.3:3844558-3844577 | MS.gene072775:CDS | 40.0% | |
GAAGAGGAAAATGAGTCAAG+AGG | - | chr5.3:3844292-3844311 | None:intergenic | 40.0% | |
GTGTTATGGTAAGCTTCAGA+AGG | - | chr5.3:3844481-3844500 | None:intergenic | 40.0% | |
TCATCATGAAGACGAGTTCT+GGG | + | chr5.3:3845329-3845348 | MS.gene072775:CDS | 40.0% | |
TCTTCACCGGACAAATAAGA+AGG | + | chr5.3:3844557-3844576 | MS.gene072775:CDS | 40.0% | |
TGTTTGGGCTTGAATGTGTA+TGG | - | chr5.3:3844204-3844223 | None:intergenic | 40.0% | |
TTTCGGCATTCATACTGTTG+TGG | - | chr5.3:3845210-3845229 | None:intergenic | 40.0% | |
! | AGCTCCTCTGCATTAACTTT+TGG | - | chr5.3:3844423-3844442 | None:intergenic | 40.0% |
! | ATGCTCCTTTCAGGTAATGT+TGG | - | chr5.3:3845002-3845021 | None:intergenic | 40.0% |
! | CCGGTGAAGAAACTATTTTC+GGG | - | chr5.3:3844547-3844566 | None:intergenic | 40.0% |
! | CGGTGAAGAAACTATTTTCG+GGG | - | chr5.3:3844546-3844565 | None:intergenic | 40.0% |
! | GGTGAAGAAACTATTTTCGG+GGG | - | chr5.3:3844545-3844564 | None:intergenic | 40.0% |
ACGTATGCGTGTTCGATTGT+CGG | - | chr5.3:3845241-3845260 | None:intergenic | 45.0% | |
ATCAGAACATGGCAACACCT+GGG | + | chr5.3:3844821-3844840 | MS.gene072775:intron | 45.0% | |
GATATAGAGCCAAGAGAAGC+CGG | + | chr5.3:3844914-3844933 | MS.gene072775:CDS | 45.0% | |
TGGACTCCCCAAATTTCCAA+TGG | + | chr5.3:3844506-3844525 | MS.gene072775:CDS | 45.0% | |
TGGGTCTCGTTTGAAAACTG+AGG | + | chr5.3:3844366-3844385 | MS.gene072775:CDS | 45.0% | |
! | GATTGTCGGCTAGTGTCTTT+CGG | - | chr5.3:3845227-3845246 | None:intergenic | 45.0% |
!!! | CACAGGTTTTGGAATCTCGT+TGG | - | chr5.3:3845289-3845308 | None:intergenic | 45.0% |
GACAATCGAACACGCATACG+TGG | + | chr5.3:3845240-3845259 | MS.gene072775:CDS | 50.0% | |
GATCAGAACATGGCAACACC+TGG | + | chr5.3:3844820-3844839 | MS.gene072775:intron | 50.0% | |
GGGAGCTCAATTCATGCCAT+TGG | - | chr5.3:3844525-3844544 | None:intergenic | 50.0% | |
GGGAGTCCATCTGTGTGTTA+TGG | - | chr5.3:3844495-3844514 | None:intergenic | 50.0% | |
TCTTCTCCAACCAGTGAGCT+TGG | + | chr5.3:3844325-3844344 | MS.gene072775:CDS | 50.0% | |
! | ACTTCATCCGTTTGAGACCC+AGG | - | chr5.3:3844841-3844860 | None:intergenic | 50.0% |
! | CAAAGTAGGGCGTTACAGTC+TGG | + | chr5.3:3844867-3844886 | MS.gene072775:CDS | 50.0% |
! | GCACGCCCTTCTTATTTGTC+CGG | - | chr5.3:3844566-3844585 | None:intergenic | 50.0% |
ATAGAGCCAAGAGAAGCCGG+AGG | + | chr5.3:3844917-3844936 | MS.gene072775:CDS | 55.0% | |
GAACTTCCTCCGGCTTCTCT+TGG | - | chr5.3:3844926-3844945 | None:intergenic | 55.0% | |
GGCAACACCTGGGTCTCAAA+CGG | + | chr5.3:3844831-3844850 | MS.gene072775:CDS | 55.0% | |
GTGCAGTGCAGGAGATTTGC+AGG | + | chr5.3:3844582-3844601 | MS.gene072775:CDS | 55.0% | |
! | ATAAGAAGGGCGTGCAGTGC+AGG | + | chr5.3:3844571-3844590 | MS.gene072775:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 3844160 | 3845514 | 3844160 | ID=MS.gene072775 |
chr5.3 | mRNA | 3844160 | 3845514 | 3844160 | ID=MS.gene072775.t1;Parent=MS.gene072775 |
chr5.3 | exon | 3844160 | 3844603 | 3844160 | ID=MS.gene072775.t1.exon1;Parent=MS.gene072775.t1 |
chr5.3 | CDS | 3844160 | 3844603 | 3844160 | ID=cds.MS.gene072775.t1;Parent=MS.gene072775.t1 |
chr5.3 | exon | 3844826 | 3844960 | 3844826 | ID=MS.gene072775.t1.exon2;Parent=MS.gene072775.t1 |
chr5.3 | CDS | 3844826 | 3844960 | 3844826 | ID=cds.MS.gene072775.t1;Parent=MS.gene072775.t1 |
chr5.3 | exon | 3845216 | 3845350 | 3845216 | ID=MS.gene072775.t1.exon3;Parent=MS.gene072775.t1 |
chr5.3 | CDS | 3845216 | 3845350 | 3845216 | ID=cds.MS.gene072775.t1;Parent=MS.gene072775.t1 |
chr5.3 | exon | 3845473 | 3845514 | 3845473 | ID=MS.gene072775.t1.exon4;Parent=MS.gene072775.t1 |
chr5.3 | CDS | 3845473 | 3845514 | 3845473 | ID=cds.MS.gene072775.t1;Parent=MS.gene072775.t1 |
Gene Sequence |
Protein sequence |