Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072816.t1 | XP_024632961.1 | 84.7 | 536 | 58 | 2 | 1 | 512 | 1 | 536 | 1.50E-264 | 921.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072816.t1 | Q9SWG3 | 24.8 | 479 | 333 | 8 | 32 | 507 | 48 | 502 | 3.3e-39 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072816.t1 | D3YBB9 | 78.7 | 512 | 109 | 0 | 1 | 512 | 49 | 560 | 7.3e-242 | 845.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene072816.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072816.t1 | MTR_0558s0020 | 87.500 | 296 | 36 | 1 | 1 | 295 | 1 | 296 | 0.0 | 545 |
| MS.gene072816.t1 | MTR_1g083640 | 83.099 | 284 | 32 | 1 | 1 | 268 | 1 | 284 | 1.81e-174 | 493 |
| MS.gene072816.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 1.80e-154 | 441 |
| MS.gene072816.t1 | MTR_2g014100 | 83.128 | 243 | 32 | 1 | 1 | 234 | 1 | 243 | 3.15e-145 | 417 |
| MS.gene072816.t1 | MTR_6g090505 | 83.122 | 237 | 40 | 0 | 65 | 301 | 1 | 237 | 9.69e-144 | 418 |
| MS.gene072816.t1 | MTR_6g090505 | 66.667 | 102 | 7 | 2 | 396 | 495 | 230 | 306 | 3.73e-34 | 132 |
| MS.gene072816.t1 | MTR_0337s0040 | 72.308 | 260 | 32 | 2 | 1 | 259 | 1 | 221 | 3.04e-126 | 368 |
| MS.gene072816.t1 | MTR_3g008240 | 84.729 | 203 | 30 | 1 | 1 | 202 | 1 | 203 | 6.98e-121 | 353 |
| MS.gene072816.t1 | MTR_4g040430 | 83.663 | 202 | 29 | 1 | 1 | 202 | 1 | 198 | 8.86e-120 | 350 |
| MS.gene072816.t1 | MTR_5g071590 | 73.889 | 180 | 34 | 2 | 1 | 167 | 1 | 180 | 1.17e-91 | 278 |
| MS.gene072816.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 2.60e-88 | 268 |
| MS.gene072816.t1 | MTR_0019s0290 | 82.237 | 152 | 27 | 0 | 82 | 233 | 9 | 160 | 1.91e-87 | 266 |
| MS.gene072816.t1 | MTR_1281s0010 | 80.734 | 109 | 21 | 0 | 19 | 127 | 1 | 109 | 4.90e-58 | 188 |
| MS.gene072816.t1 | MTR_6g051425 | 31.761 | 318 | 186 | 6 | 40 | 341 | 22 | 324 | 3.53e-39 | 146 |
| MS.gene072816.t1 | MTR_0337s0060 | 92.424 | 66 | 5 | 0 | 447 | 512 | 21 | 86 | 3.81e-35 | 132 |
| MS.gene072816.t1 | MTR_4g008820 | 71.717 | 99 | 27 | 1 | 1 | 98 | 125 | 223 | 4.37e-33 | 134 |
| MS.gene072816.t1 | MTR_8g046060 | 78.409 | 88 | 10 | 2 | 1 | 79 | 91 | 178 | 1.65e-32 | 124 |
| MS.gene072816.t1 | MTR_1g070355 | 27.052 | 329 | 209 | 10 | 41 | 362 | 80 | 384 | 1.04e-18 | 89.7 |
| MS.gene072816.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 4.79e-15 | 78.2 |
| MS.gene072816.t1 | MTR_4g035820 | 22.759 | 290 | 191 | 7 | 17 | 299 | 61 | 324 | 5.79e-14 | 75.1 |
| MS.gene072816.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.39e-13 | 66.6 |
| MS.gene072816.t1 | MTR_1g013060 | 28.704 | 216 | 135 | 6 | 40 | 253 | 29 | 227 | 2.75e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072816.t1 | AT4G38180 | 28.085 | 470 | 315 | 6 | 32 | 499 | 70 | 518 | 4.10e-60 | 212 |
| MS.gene072816.t1 | AT3G06250 | 26.273 | 491 | 285 | 11 | 34 | 521 | 189 | 605 | 1.08e-41 | 159 |
| MS.gene072816.t1 | AT3G06250 | 26.273 | 491 | 285 | 11 | 34 | 521 | 189 | 605 | 1.08e-41 | 159 |
| MS.gene072816.t1 | AT3G06250 | 26.273 | 491 | 285 | 11 | 34 | 521 | 189 | 605 | 1.08e-41 | 159 |
| MS.gene072816.t1 | AT4G15090 | 25.380 | 461 | 317 | 8 | 50 | 507 | 66 | 502 | 3.43e-41 | 158 |
| MS.gene072816.t1 | AT4G15090 | 25.380 | 461 | 317 | 8 | 50 | 507 | 66 | 502 | 3.43e-41 | 158 |
| MS.gene072816.t1 | AT4G15090 | 25.380 | 461 | 317 | 8 | 50 | 507 | 66 | 502 | 3.43e-41 | 158 |
| MS.gene072816.t1 | AT4G15090 | 25.380 | 461 | 317 | 8 | 50 | 507 | 66 | 502 | 3.43e-41 | 158 |
| MS.gene072816.t1 | AT4G15090 | 25.380 | 461 | 317 | 8 | 50 | 507 | 66 | 502 | 3.43e-41 | 158 |
| MS.gene072816.t1 | AT1G76320 | 26.049 | 453 | 293 | 11 | 50 | 496 | 12 | 428 | 2.68e-40 | 155 |
| MS.gene072816.t1 | AT1G76320 | 26.049 | 453 | 293 | 11 | 50 | 496 | 12 | 428 | 6.07e-40 | 154 |
| MS.gene072816.t1 | AT1G76320 | 26.049 | 453 | 293 | 11 | 50 | 496 | 12 | 428 | 6.13e-40 | 154 |
| MS.gene072816.t1 | AT1G76320 | 26.049 | 453 | 293 | 11 | 50 | 496 | 12 | 428 | 6.13e-40 | 154 |
| MS.gene072816.t1 | AT1G10240 | 26.226 | 469 | 299 | 14 | 49 | 497 | 62 | 503 | 4.31e-38 | 149 |
| MS.gene072816.t1 | AT1G10240 | 26.226 | 469 | 299 | 14 | 49 | 497 | 62 | 503 | 4.31e-38 | 149 |
| MS.gene072816.t1 | AT2G27110 | 27.321 | 377 | 249 | 7 | 127 | 499 | 108 | 463 | 4.75e-38 | 149 |
| MS.gene072816.t1 | AT2G27110 | 27.321 | 377 | 249 | 7 | 127 | 499 | 108 | 463 | 4.75e-38 | 149 |
| MS.gene072816.t1 | AT4G38170 | 28.727 | 275 | 185 | 4 | 236 | 507 | 25 | 291 | 7.25e-38 | 146 |
| MS.gene072816.t1 | AT2G27110 | 29.758 | 289 | 195 | 3 | 213 | 499 | 36 | 318 | 1.33e-37 | 147 |
| MS.gene072816.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 1.53e-37 | 147 |
| MS.gene072816.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 1.64e-37 | 147 |
| MS.gene072816.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 1.64e-37 | 147 |
| MS.gene072816.t1 | AT5G18960 | 25.249 | 503 | 298 | 13 | 24 | 521 | 200 | 629 | 6.44e-37 | 145 |
| MS.gene072816.t1 | AT5G18960 | 25.249 | 503 | 298 | 13 | 24 | 521 | 200 | 629 | 6.44e-37 | 145 |
| MS.gene072816.t1 | AT3G22170 | 22.129 | 479 | 332 | 9 | 34 | 507 | 69 | 511 | 2.83e-33 | 135 |
| MS.gene072816.t1 | AT3G22170 | 22.129 | 479 | 332 | 9 | 34 | 507 | 69 | 511 | 2.83e-33 | 135 |
| MS.gene072816.t1 | AT2G32250 | 24.453 | 503 | 300 | 14 | 1 | 496 | 8 | 437 | 2.31e-32 | 132 |
| MS.gene072816.t1 | AT2G32250 | 24.453 | 503 | 300 | 14 | 1 | 496 | 8 | 437 | 3.19e-32 | 132 |
| MS.gene072816.t1 | AT2G32250 | 24.453 | 503 | 300 | 14 | 1 | 496 | 8 | 437 | 3.19e-32 | 132 |
| MS.gene072816.t1 | AT2G32250 | 24.453 | 503 | 300 | 14 | 1 | 496 | 8 | 437 | 4.10e-32 | 131 |
| MS.gene072816.t1 | AT2G32250 | 24.453 | 503 | 300 | 14 | 1 | 496 | 8 | 437 | 4.10e-32 | 131 |
| MS.gene072816.t1 | AT2G32250 | 24.453 | 503 | 300 | 14 | 1 | 496 | 8 | 437 | 4.10e-32 | 131 |
| MS.gene072816.t1 | AT2G32250 | 24.890 | 454 | 265 | 12 | 50 | 496 | 12 | 396 | 1.00e-31 | 130 |
| MS.gene072816.t1 | AT2G32250 | 24.890 | 454 | 265 | 12 | 50 | 496 | 12 | 396 | 1.08e-31 | 130 |
| MS.gene072816.t1 | AT1G80010 | 25.551 | 454 | 287 | 15 | 41 | 478 | 101 | 519 | 2.46e-31 | 129 |
| MS.gene072816.t1 | AT1G52520 | 23.431 | 478 | 323 | 12 | 41 | 512 | 91 | 531 | 1.83e-28 | 120 |
| MS.gene072816.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 106 | 369 | 3.08e-27 | 116 |
| MS.gene072816.t1 | AT4G19990 | 23.620 | 453 | 283 | 11 | 41 | 483 | 27 | 426 | 3.26e-27 | 116 |
| MS.gene072816.t1 | AT4G19990 | 23.620 | 453 | 283 | 11 | 41 | 483 | 27 | 426 | 3.30e-27 | 116 |
| MS.gene072816.t1 | AT4G19990 | 23.620 | 453 | 283 | 11 | 41 | 483 | 27 | 426 | 3.30e-27 | 116 |
| MS.gene072816.t1 | AT4G19990 | 23.620 | 453 | 283 | 11 | 41 | 483 | 41 | 440 | 3.43e-27 | 116 |
| MS.gene072816.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 4.55e-27 | 116 |
| MS.gene072816.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 4.55e-27 | 116 |
| MS.gene072816.t1 | AT5G28530 | 22.970 | 431 | 245 | 15 | 40 | 462 | 60 | 411 | 1.03e-17 | 87.0 |
| MS.gene072816.t1 | AT5G28530 | 22.970 | 431 | 245 | 15 | 40 | 462 | 60 | 411 | 1.05e-17 | 86.7 |
Find 73 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5.3:-4320737 | MS.gene072816:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5.3:-4320470 | MS.gene072816:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 5.3:-4321018 | MS.gene072816:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5.3:-4321530 | MS.gene072816:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5.3:-4320985 | MS.gene072816:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5.3:+4320891 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5.3:-4320696 | MS.gene072816:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 5.3:+4320873 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5.3:+4321480 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 5.3:-4320437 | MS.gene072816:CDS |
| ACAATTGACGGTTGAAAATT+CGG | 0.360529 | 5.3:-4322302 | MS.gene072816:CDS |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5.3:-4320596 | MS.gene072816:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5.3:-4321473 | MS.gene072816:intron |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 5.3:-4320428 | MS.gene072816:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5.3:-4321481 | MS.gene072816:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5.3:-4320597 | MS.gene072816:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5.3:+4322010 | None:intergenic |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 5.3:+4322249 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5.3:-4322239 | MS.gene072816:CDS |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 5.3:-4322168 | MS.gene072816:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5.3:-4321833 | MS.gene072816:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5.3:-4321951 | MS.gene072816:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 5.3:-4321919 | MS.gene072816:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 5.3:+4320880 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5.3:-4321968 | MS.gene072816:CDS |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 5.3:-4322085 | MS.gene072816:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5.3:-4321803 | MS.gene072816:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 5.3:-4322314 | MS.gene072816:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5.3:-4320806 | MS.gene072816:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5.3:-4320642 | MS.gene072816:CDS |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 5.3:+4321863 | None:intergenic |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5.3:-4322119 | MS.gene072816:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.480334 | 5.3:-4320695 | MS.gene072816:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5.3:-4321758 | MS.gene072816:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5.3:+4321974 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 5.3:-4322181 | MS.gene072816:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5.3:-4321690 | MS.gene072816:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5.3:-4322125 | MS.gene072816:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5.3:+4321005 | None:intergenic |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5.3:-4321677 | MS.gene072816:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5.3:-4320456 | MS.gene072816:CDS |
| GACCGCATAAGCTGACTGTT+AGG | 0.495843 | 5.3:+4320376 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5.3:-4321771 | MS.gene072816:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5.3:+4321585 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5.3:-4320609 | MS.gene072816:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5.3:+4321719 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5.3:-4320591 | MS.gene072816:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5.3:+4320488 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 5.3:-4321915 | MS.gene072816:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 5.3:-4322074 | MS.gene072816:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5.3:+4320493 | None:intergenic |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 5.3:-4322249 | MS.gene072816:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5.3:-4322073 | MS.gene072816:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 5.3:+4321875 | None:intergenic |
| TGAAAATTCGGTTATTGATG+CGG | 0.556330 | 5.3:-4322290 | MS.gene072816:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5.3:+4320860 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5.3:-4321623 | MS.gene072816:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5.3:-4321755 | MS.gene072816:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5.3:-4321764 | MS.gene072816:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 5.3:-4320874 | MS.gene072816:CDS |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5.3:-4321684 | MS.gene072816:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5.3:-4321770 | MS.gene072816:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5.3:-4321681 | MS.gene072816:CDS |
| ATCCTAACAGTCAGCTTATG+CGG | 0.608857 | 5.3:-4320378 | MS.gene072816:intron |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 5.3:-4322325 | MS.gene072816:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 5.3:+4322025 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5.3:+4320640 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5.3:-4321750 | MS.gene072816:CDS |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5.3:-4320805 | MS.gene072816:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5.3:-4320455 | MS.gene072816:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 5.3:-4321916 | MS.gene072816:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5.3:+4319905 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 5.3:-4320878 | MS.gene072816:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATGAAAAATTGTTTTAA+TGG | - | chr5.3:4321576-4321595 | MS.gene072816:CDS | 15.0% |
| !!! | TTAATGTTTATATTGATTGA+AGG | - | chr5.3:4320917-4320936 | MS.gene072816:CDS | 15.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr5.3:4320118-4320137 | MS.gene072816:intron | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr5.3:4320324-4320343 | MS.gene072816:intron | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr5.3:4320062-4320081 | MS.gene072816:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr5.3:4320945-4320964 | MS.gene072816:CDS | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | - | chr5.3:4321580-4321599 | MS.gene072816:CDS | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr5.3:4321414-4321433 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr5.3:4320124-4320143 | MS.gene072816:intron | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr5.3:4320762-4320781 | MS.gene072816:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr5.3:4320788-4320807 | None:intergenic | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr5.3:4320327-4320346 | MS.gene072816:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr5.3:4321947-4321966 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr5.3:4321773-4321792 | MS.gene072816:CDS | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr5.3:4320835-4320854 | MS.gene072816:CDS | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr5.3:4321912-4321931 | None:intergenic | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr5.3:4320328-4320347 | MS.gene072816:intron | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr5.3:4321947-4321966 | MS.gene072816:CDS | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr5.3:4321506-4321525 | MS.gene072816:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr5.3:4320937-4320956 | MS.gene072816:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr5.3:4321196-4321215 | MS.gene072816:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr5.3:4320675-4320694 | MS.gene072816:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr5.3:4320676-4320695 | MS.gene072816:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr5.3:4322048-4322067 | MS.gene072816:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr5.3:4320114-4320133 | None:intergenic | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr5.3:4320944-4320963 | MS.gene072816:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr5.3:4320440-4320459 | MS.gene072816:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr5.3:4322049-4322068 | MS.gene072816:CDS | 25.0% |
| AAACACATATGATCTTTCCA+TGG | + | chr5.3:4321008-4321027 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr5.3:4320170-4320189 | MS.gene072816:intron | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr5.3:4320770-4320789 | MS.gene072816:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr5.3:4321547-4321566 | MS.gene072816:CDS | 30.0% | |
| ACAATTGACGGTTGAAAATT+CGG | - | chr5.3:4319941-4319960 | MS.gene072816:intron | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr5.3:4320473-4320492 | MS.gene072816:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr5.3:4321548-4321567 | MS.gene072816:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr5.3:4321241-4321260 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | + | chr5.3:4322120-4322139 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr5.3:4320713-4320732 | MS.gene072816:CDS | 30.0% | |
| CCATGATTCTTTATCACTAA+AGG | + | chr5.3:4319997-4320016 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr5.3:4319994-4320013 | MS.gene072816:intron | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr5.3:4321952-4321971 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | - | chr5.3:4320874-4320893 | MS.gene072816:CDS | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr5.3:4321950-4321969 | MS.gene072816:CDS | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr5.3:4321462-4321481 | MS.gene072816:intron | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr5.3:4322121-4322140 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr5.3:4320766-4320785 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr5.3:4320259-4320278 | MS.gene072816:intron | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr5.3:4320004-4320023 | MS.gene072816:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr5.3:4321758-4321777 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr5.3:4320169-4320188 | MS.gene072816:intron | 30.0% | |
| TGAAAATTCGGTTATTGATG+CGG | - | chr5.3:4319953-4319972 | MS.gene072816:intron | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr5.3:4320641-4320660 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr5.3:4321892-4321911 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr5.3:4320527-4320546 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr5.3:4321155-4321174 | MS.gene072816:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr5.3:4320371-4320390 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr5.3:4320292-4320311 | MS.gene072816:intron | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr5.3:4322007-4322026 | MS.gene072816:CDS | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr5.3:4320517-4320536 | MS.gene072816:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr5.3:4321355-4321374 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr5.3:4321405-4321424 | MS.gene072816:intron | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr5.3:4322232-4322251 | MS.gene072816:CDS | 30.0% |
| !! | AGACATCAACTACTTTTGAT+TGG | - | chr5.3:4321301-4321320 | MS.gene072816:intron | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr5.3:4322132-4322151 | MS.gene072816:CDS | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr5.3:4320849-4320868 | MS.gene072816:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr5.3:4322133-4322152 | MS.gene072816:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr5.3:4322229-4322248 | MS.gene072816:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr5.3:4322297-4322316 | MS.gene072816:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr5.3:4321417-4321436 | MS.gene072816:intron | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr5.3:4321787-4321806 | MS.gene072816:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr5.3:4320075-4320094 | MS.gene072816:intron | 35.0% | |
| ATATCAACTTCATCTGAGAG+TGG | - | chr5.3:4319918-4319937 | MS.gene072816:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr5.3:4321788-4321807 | MS.gene072816:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr5.3:4320410-4320429 | MS.gene072816:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | chr5.3:4322122-4322141 | None:intergenic | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr5.3:4320158-4320177 | MS.gene072816:intron | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr5.3:4320258-4320277 | MS.gene072816:intron | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | - | chr5.3:4321634-4321653 | MS.gene072816:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr5.3:4320253-4320272 | MS.gene072816:intron | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr5.3:4320472-4320491 | MS.gene072816:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr5.3:4320195-4320214 | MS.gene072816:intron | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr5.3:4320553-4320572 | MS.gene072816:CDS | 35.0% | |
| TGTACAGAGCACAAATTCTA+AGG | + | chr5.3:4320984-4321003 | None:intergenic | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr5.3:4320236-4320255 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr5.3:4321258-4321277 | MS.gene072816:intron | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr5.3:4322070-4322089 | MS.gene072816:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr5.3:4321717-4321736 | MS.gene072816:CDS | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr5.3:4320855-4320874 | MS.gene072816:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr5.3:4321590-4321609 | MS.gene072816:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr5.3:4321430-4321449 | MS.gene072816:intron | 35.0% |
| !! | CACAAATTCTAAGGCAAGAT+AGG | + | chr5.3:4320975-4320994 | None:intergenic | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr5.3:4322299-4322318 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr5.3:4321647-4321666 | MS.gene072816:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr5.3:4322239-4322258 | MS.gene072816:CDS | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr5.3:4322300-4322319 | MS.gene072816:CDS | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr5.3:4321753-4321772 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr5.3:4321106-4321125 | None:intergenic | 40.0% | |
| ATCCTAACAGTCAGCTTATG+CGG | - | chr5.3:4321865-4321884 | MS.gene072816:CDS | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr5.3:4319929-4319948 | MS.gene072816:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr5.3:4321964-4321983 | MS.gene072816:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr5.3:4322196-4322215 | MS.gene072816:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr5.3:4322195-4322214 | MS.gene072816:CDS | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr5.3:4321225-4321244 | MS.gene072816:intron | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr5.3:4321963-4321982 | MS.gene072816:CDS | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr5.3:4321365-4321384 | MS.gene072816:intron | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr5.3:4321102-4321121 | MS.gene072816:intron | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr5.3:4321366-4321385 | None:intergenic | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr5.3:4322102-4322121 | MS.gene072816:CDS | 40.0% | |
| ! | GAGGGATAATCATGCTGATT+TGG | - | chr5.3:4321806-4321825 | MS.gene072816:CDS | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr5.3:4322242-4322261 | MS.gene072816:CDS | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr5.3:4321646-4321665 | MS.gene072816:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr5.3:4320209-4320228 | None:intergenic | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | - | chr5.3:4321815-4321834 | MS.gene072816:CDS | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr5.3:4320479-4320498 | MS.gene072816:CDS | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr5.3:4320683-4320702 | MS.gene072816:CDS | 40.0% |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr5.3:4320562-4320581 | MS.gene072816:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr5.3:4320620-4320639 | MS.gene072816:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr5.3:4320221-4320240 | None:intergenic | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr5.3:4321606-4321625 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | - | chr5.3:4320988-4321007 | MS.gene072816:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr5.3:4322217-4322236 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr5.3:4320263-4320282 | MS.gene072816:intron | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr5.3:4320559-4320578 | MS.gene072816:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr5.3:4322115-4322134 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr5.3:4322197-4322216 | MS.gene072816:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr5.3:4320661-4320680 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr5.3:4320272-4320291 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr5.3:4321669-4321688 | MS.gene072816:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr5.3:4321652-4321671 | MS.gene072816:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr5.3:4320275-4320294 | MS.gene072816:intron | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr5.3:4321373-4321392 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr5.3:4321369-4321388 | MS.gene072816:intron | 50.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | + | chr5.3:4320383-4320402 | None:intergenic | 50.0% | |
| GACCGCATAAGCTGACTGTT+AGG | + | chr5.3:4321870-4321889 | None:intergenic | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr5.3:4321601-4321620 | MS.gene072816:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr5.3:4322153-4322172 | MS.gene072816:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr5.3:4321438-4321457 | MS.gene072816:intron | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr5.3:4321437-4321456 | MS.gene072816:intron | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr5.3:4320485-4320504 | MS.gene072816:CDS | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr5.3:4321386-4321405 | None:intergenic | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr5.3:4320566-4320585 | MS.gene072816:CDS | 55.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr5.3:4320488-4320507 | MS.gene072816:CDS | 55.0% |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr5.3:4320493-4320512 | MS.gene072816:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 4319909 | 4322356 | 4319909 | ID=MS.gene072816 |
| chr5.3 | mRNA | 4319909 | 4322356 | 4319909 | ID=MS.gene072816.t1;Parent=MS.gene072816 |
| chr5.3 | exon | 4321474 | 4322356 | 4321474 | ID=MS.gene072816.t1.exon1;Parent=MS.gene072816.t1 |
| chr5.3 | CDS | 4321474 | 4322356 | 4321474 | ID=cds.MS.gene072816.t1;Parent=MS.gene072816.t1 |
| chr5.3 | exon | 4320379 | 4321030 | 4320379 | ID=MS.gene072816.t1.exon2;Parent=MS.gene072816.t1 |
| chr5.3 | CDS | 4320379 | 4321030 | 4320379 | ID=cds.MS.gene072816.t1;Parent=MS.gene072816.t1 |
| chr5.3 | exon | 4319909 | 4319948 | 4319909 | ID=MS.gene072816.t1.exon3;Parent=MS.gene072816.t1 |
| chr5.3 | CDS | 4319909 | 4319948 | 4319909 | ID=cds.MS.gene072816.t1;Parent=MS.gene072816.t1 |
| Gene Sequence |
| Protein sequence |
