Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072878.t1 | XP_024634855.1 | 62.4 | 790 | 37 | 4 | 1 | 530 | 1 | 790 | 1.50E-245 | 858.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072878.t1 | Q9LIE5 | 30.2 | 262 | 176 | 3 | 122 | 377 | 398 | 658 | 1.9e-26 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072878.t1 | A0A151RX65 | 43.0 | 698 | 138 | 4 | 1 | 438 | 1 | 698 | 1.6e-135 | 492.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene072878.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072878.t1 | MTR_4g102720 | 37.584 | 149 | 33 | 3 | 1 | 122 | 1 | 116 | 2.04e-21 | 93.6 |
| MS.gene072878.t1 | MTR_0402s0040 | 30.137 | 219 | 103 | 7 | 45 | 250 | 92 | 273 | 3.74e-18 | 87.8 |
| MS.gene072878.t1 | MTR_0337s0060 | 30.282 | 142 | 94 | 3 | 168 | 307 | 14 | 152 | 7.58e-14 | 71.6 |
| MS.gene072878.t1 | MTR_7g061980 | 38.053 | 113 | 42 | 3 | 4 | 88 | 7 | 119 | 1.11e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072878.t1 | AT3G22170 | 29.927 | 274 | 184 | 4 | 110 | 377 | 387 | 658 | 1.31e-29 | 124 |
| MS.gene072878.t1 | AT3G22170 | 29.927 | 274 | 184 | 4 | 110 | 377 | 387 | 658 | 1.31e-29 | 124 |
| MS.gene072878.t1 | AT4G38180 | 32.727 | 220 | 140 | 3 | 122 | 337 | 413 | 628 | 1.58e-26 | 114 |
| MS.gene072878.t1 | AT4G15090 | 24.859 | 354 | 226 | 5 | 110 | 435 | 377 | 718 | 2.80e-26 | 114 |
| MS.gene072878.t1 | AT4G15090 | 24.859 | 354 | 226 | 5 | 110 | 435 | 377 | 718 | 2.80e-26 | 114 |
| MS.gene072878.t1 | AT4G15090 | 24.859 | 354 | 226 | 5 | 110 | 435 | 377 | 718 | 2.80e-26 | 114 |
| MS.gene072878.t1 | AT4G15090 | 24.859 | 354 | 226 | 5 | 110 | 435 | 377 | 718 | 2.80e-26 | 114 |
| MS.gene072878.t1 | AT4G15090 | 24.859 | 354 | 226 | 5 | 110 | 435 | 377 | 718 | 2.80e-26 | 114 |
| MS.gene072878.t1 | AT4G38170 | 29.148 | 223 | 150 | 3 | 124 | 342 | 180 | 398 | 8.60e-26 | 111 |
| MS.gene072878.t1 | AT5G18960 | 31.081 | 222 | 138 | 6 | 122 | 337 | 510 | 722 | 1.04e-22 | 102 |
| MS.gene072878.t1 | AT5G18960 | 31.081 | 222 | 138 | 6 | 122 | 337 | 510 | 722 | 1.04e-22 | 102 |
| MS.gene072878.t1 | AT1G80010 | 26.692 | 266 | 176 | 7 | 81 | 337 | 400 | 655 | 2.02e-22 | 102 |
| MS.gene072878.t1 | AT3G06250 | 31.982 | 222 | 136 | 6 | 122 | 337 | 486 | 698 | 4.14e-22 | 100 |
| MS.gene072878.t1 | AT3G06250 | 31.982 | 222 | 136 | 6 | 122 | 337 | 486 | 698 | 4.14e-22 | 100 |
| MS.gene072878.t1 | AT3G06250 | 31.982 | 222 | 136 | 6 | 122 | 337 | 486 | 698 | 4.14e-22 | 100 |
| MS.gene072878.t1 | AT1G76320 | 29.767 | 215 | 148 | 2 | 123 | 337 | 327 | 538 | 6.35e-22 | 100 |
| MS.gene072878.t1 | AT1G76320 | 29.767 | 215 | 148 | 2 | 123 | 337 | 327 | 538 | 6.77e-22 | 100 |
| MS.gene072878.t1 | AT1G76320 | 29.767 | 215 | 148 | 2 | 123 | 337 | 327 | 538 | 6.77e-22 | 100 |
| MS.gene072878.t1 | AT1G76320 | 29.767 | 215 | 148 | 2 | 123 | 337 | 327 | 538 | 1.51e-21 | 99.0 |
| MS.gene072878.t1 | AT4G19990 | 31.004 | 229 | 154 | 3 | 124 | 350 | 339 | 565 | 3.79e-21 | 97.8 |
| MS.gene072878.t1 | AT4G19990 | 31.004 | 229 | 154 | 3 | 124 | 350 | 339 | 565 | 3.79e-21 | 97.8 |
| MS.gene072878.t1 | AT4G19990 | 31.004 | 229 | 154 | 3 | 124 | 350 | 282 | 508 | 4.34e-21 | 97.8 |
| MS.gene072878.t1 | AT4G19990 | 31.004 | 229 | 154 | 3 | 124 | 350 | 339 | 565 | 4.57e-21 | 97.8 |
| MS.gene072878.t1 | AT4G19990 | 31.004 | 229 | 154 | 3 | 124 | 350 | 339 | 565 | 4.57e-21 | 97.8 |
| MS.gene072878.t1 | AT4G19990 | 31.004 | 229 | 154 | 3 | 124 | 350 | 339 | 565 | 6.06e-21 | 97.4 |
| MS.gene072878.t1 | AT2G27110 | 28.372 | 215 | 150 | 3 | 124 | 337 | 217 | 428 | 6.58e-21 | 97.1 |
| MS.gene072878.t1 | AT4G19990 | 31.004 | 229 | 154 | 3 | 124 | 350 | 353 | 579 | 7.10e-21 | 97.1 |
| MS.gene072878.t1 | AT2G27110 | 28.372 | 215 | 150 | 3 | 124 | 337 | 362 | 573 | 8.81e-21 | 97.1 |
| MS.gene072878.t1 | AT2G27110 | 28.372 | 215 | 150 | 3 | 124 | 337 | 362 | 573 | 8.81e-21 | 97.1 |
| MS.gene072878.t1 | AT2G32250 | 25.610 | 246 | 178 | 2 | 124 | 369 | 294 | 534 | 8.85e-21 | 96.7 |
| MS.gene072878.t1 | AT2G32250 | 25.610 | 246 | 178 | 2 | 124 | 369 | 335 | 575 | 9.25e-21 | 96.7 |
| MS.gene072878.t1 | AT2G32250 | 25.610 | 246 | 178 | 2 | 124 | 369 | 335 | 575 | 9.25e-21 | 96.7 |
| MS.gene072878.t1 | AT2G32250 | 25.610 | 246 | 178 | 2 | 124 | 369 | 335 | 575 | 9.25e-21 | 96.7 |
| MS.gene072878.t1 | AT2G32250 | 25.610 | 246 | 178 | 2 | 124 | 369 | 335 | 575 | 9.57e-21 | 96.7 |
| MS.gene072878.t1 | AT2G32250 | 25.610 | 246 | 178 | 2 | 124 | 369 | 335 | 575 | 9.57e-21 | 96.7 |
| MS.gene072878.t1 | AT2G32250 | 25.610 | 246 | 178 | 2 | 124 | 369 | 294 | 534 | 9.69e-21 | 96.7 |
| MS.gene072878.t1 | AT2G32250 | 25.610 | 246 | 178 | 2 | 124 | 369 | 335 | 575 | 1.40e-20 | 96.3 |
| MS.gene072878.t1 | AT1G52520 | 27.103 | 214 | 146 | 3 | 133 | 337 | 420 | 632 | 1.13e-18 | 90.1 |
| MS.gene072878.t1 | AT1G10240 | 25.692 | 253 | 164 | 8 | 125 | 369 | 394 | 630 | 2.40e-14 | 76.3 |
| MS.gene072878.t1 | AT1G10240 | 25.692 | 253 | 164 | 8 | 125 | 369 | 394 | 630 | 2.40e-14 | 76.3 |
| MS.gene072878.t1 | AT5G28530 | 23.643 | 258 | 183 | 6 | 81 | 337 | 371 | 615 | 1.79e-13 | 73.6 |
| MS.gene072878.t1 | AT5G28530 | 23.643 | 258 | 183 | 6 | 81 | 337 | 308 | 552 | 1.83e-13 | 73.6 |
| MS.gene072878.t1 | AT5G28530 | 24.031 | 258 | 178 | 7 | 81 | 337 | 371 | 611 | 6.41e-13 | 72.0 |
| MS.gene072878.t1 | AT5G28530 | 24.031 | 258 | 178 | 7 | 81 | 337 | 371 | 611 | 6.41e-13 | 72.0 |
| MS.gene072878.t1 | AT5G28530 | 24.031 | 258 | 178 | 7 | 81 | 337 | 308 | 548 | 7.10e-13 | 71.6 |
Find 83 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCACCTCTTTAAAATATA+AGG | 0.176322 | 3.2:-87358283 | None:intergenic |
| TCTGAACACCATACTTTATA+AGG | 0.212221 | 3.2:-87357712 | None:intergenic |
| TTGAAGATGCTTGGGAGTTC+TGG | 0.234863 | 3.2:+87356684 | MS.gene072878:CDS |
| TTACGAAACTCGACAGCTTC+TGG | 0.243237 | 3.2:-87358442 | None:intergenic |
| GACAACATATGAGTTGTTTC+TGG | 0.253501 | 3.2:-87356951 | None:intergenic |
| CTGAAAACCATATCAACTTT+TGG | 0.256089 | 3.2:-87356656 | None:intergenic |
| TATCTCTTTAATATTGTTAG+AGG | 0.283905 | 3.2:-87358542 | None:intergenic |
| TATTGCCAAGAAAAGGAATA+TGG | 0.289005 | 3.2:+87358126 | MS.gene072878:CDS |
| CCTTGCTTCACAATTTGTTC+TGG | 0.300300 | 3.2:-87356853 | None:intergenic |
| CATATAGGTGCACTTGTAAT+TGG | 0.302297 | 3.2:-87358934 | None:intergenic |
| CTTAAAAGTCTTCATTCATA+TGG | 0.313141 | 3.2:+87358240 | MS.gene072878:CDS |
| TTGGAAGCCAAAAGTTGATA+TGG | 0.315145 | 3.2:+87356649 | MS.gene072878:CDS |
| TTGGATTCTTTGTGCTTGTC+TGG | 0.326800 | 3.2:-87356821 | None:intergenic |
| CTTTGCGCGTTTCTTTCTCT+TGG | 0.329292 | 3.2:-87358665 | None:intergenic |
| ATGAAGAAGACTTTGACATT+AGG | 0.337357 | 3.2:+87357791 | MS.gene072878:CDS |
| CAATTACAAGTGCACCTATA+TGG | 0.342061 | 3.2:+87358935 | MS.gene072878:CDS |
| TGTACAATATAAAGGAGAAA+TGG | 0.347671 | 3.2:+87357756 | MS.gene072878:CDS |
| TGTCGTAAATTTGAGAGCTT+TGG | 0.348811 | 3.2:+87358199 | MS.gene072878:CDS |
| ACATCCCTCCTTATAAAGTA+TGG | 0.358569 | 3.2:+87357704 | MS.gene072878:CDS |
| TGTTATTAGCTAACCATAGA+TGG | 0.362982 | 3.2:-87358979 | None:intergenic |
| GATGGAACATCTAGTCAATT+TGG | 0.363982 | 3.2:+87359070 | MS.gene072878:CDS |
| TGCATACAATCAACCATCTA+TGG | 0.365263 | 3.2:+87358966 | MS.gene072878:CDS |
| TGAAGAAGACTTTGACATTA+GGG | 0.366463 | 3.2:+87357792 | MS.gene072878:CDS |
| ATGGCAAGTGACCTTCGATT+TGG | 0.384310 | 3.2:+87358153 | MS.gene072878:CDS |
| TTTGTTCTGGTCTCTAGTCT+TGG | 0.387348 | 3.2:-87356840 | None:intergenic |
| GCAAAGAATGTACAATATAA+AGG | 0.392434 | 3.2:+87357748 | MS.gene072878:CDS |
| CAGTAGCTTTGAAGATGCTT+GGG | 0.400724 | 3.2:+87356676 | MS.gene072878:CDS |
| GATACAAGATGAATGAAGAT+TGG | 0.401677 | 3.2:+87356630 | None:intergenic |
| TAAGGAAGTTGCTGATGAAT+TGG | 0.406007 | 3.2:+87358462 | MS.gene072878:CDS |
| TATGCATTATTAAGCCATAT+AGG | 0.412953 | 3.2:-87358949 | None:intergenic |
| TCAGTAGCTTTGAAGATGCT+TGG | 0.418263 | 3.2:+87356675 | MS.gene072878:CDS |
| GACTTTAAGAAATGCATGTA+TGG | 0.419899 | 3.2:+87357647 | MS.gene072878:intron |
| GTACAATATAAAGGAGAAAT+GGG | 0.433816 | 3.2:+87357757 | MS.gene072878:CDS |
| GATGGTGCAACACAAGTAAA+GGG | 0.435850 | 3.2:+87358577 | MS.gene072878:CDS |
| AAGAACAATTTGAAGATGGT+TGG | 0.449713 | 3.2:+87357681 | MS.gene072878:CDS |
| GTTCAAAACGTTGGAAAGGT+TGG | 0.454209 | 3.2:+87358626 | MS.gene072878:CDS |
| CTTATGTTATTGCCAAGAAA+AGG | 0.457771 | 3.2:+87358119 | MS.gene072878:CDS |
| AGGTTTGTTTGCTGCAAAGA+AGG | 0.468354 | 3.2:+87356788 | MS.gene072878:intron |
| TGATGGTGCAACACAAGTAA+AGG | 0.471729 | 3.2:+87358576 | MS.gene072878:CDS |
| ACAAATTGTGAAGCAAGGTT+AGG | 0.474466 | 3.2:+87356858 | MS.gene072878:CDS |
| GAATACGAGTTCTTCAGTCT+TGG | 0.477905 | 3.2:-87357974 | None:intergenic |
| TTCACAAATTCAAGAACCTA+TGG | 0.484743 | 3.2:+87358696 | MS.gene072878:CDS |
| ACATTGTAAATCACTAATGT+TGG | 0.488437 | 3.2:-87358893 | None:intergenic |
| TTCAAAACGTTGGAAAGGTT+GGG | 0.489068 | 3.2:+87358627 | MS.gene072878:CDS |
| TGGGAGTTCTGGAAAACTTA+CGG | 0.491418 | 3.2:+87356695 | MS.gene072878:CDS |
| CTTGTAATTGGCGATGCATA+TGG | 0.492051 | 3.2:-87358922 | None:intergenic |
| GAATGTGGATGGAAAATTGA+TGG | 0.494783 | 3.2:+87356887 | MS.gene072878:CDS |
| CAGGCCTCCATTCAAGTCTC+TGG | 0.496457 | 3.2:-87359212 | None:intergenic |
| CTCTTTAAAATATAAGGCTC+AGG | 0.500537 | 3.2:-87358277 | None:intergenic |
| GAGATATCAAGTACTAATGA+TGG | 0.502322 | 3.2:+87358559 | MS.gene072878:CDS |
| GATGAAGAACAATTTGAAGA+TGG | 0.510431 | 3.2:+87357677 | MS.gene072878:CDS |
| TTCTTGAATTTGTGAAGCAG+TGG | 0.516062 | 3.2:-87358689 | None:intergenic |
| ATTGCCAAGAAAAGGAATAT+GGG | 0.518068 | 3.2:+87358127 | MS.gene072878:CDS |
| AGAAAAGGAATATGGGAGAA+TGG | 0.522592 | 3.2:+87358134 | MS.gene072878:CDS |
| AATAGTAGGAGTATAAAGCT+TGG | 0.523378 | 3.2:-87358017 | None:intergenic |
| ATAAGTAGTGAACAAGTGAA+TGG | 0.530525 | 3.2:+87358517 | MS.gene072878:CDS |
| AGGTTGGGTAGAAACGAAAC+TGG | 0.532288 | 3.2:+87358642 | MS.gene072878:CDS |
| CGATTTCCTTTGTTGTACAC+CGG | 0.540939 | 3.2:-87357030 | None:intergenic |
| GTAGAAGAACAAAGCTAAGC+AGG | 0.541747 | 3.2:+87358795 | MS.gene072878:intron |
| TTAGGACTTAAGAATGTGGA+TGG | 0.548535 | 3.2:+87356876 | MS.gene072878:CDS |
| AAGATGTTGTAGAAGAAAAG+CGG | 0.551004 | 3.2:+87357909 | MS.gene072878:CDS |
| AAGGGGTTTAAGAACAAAGA+AGG | 0.557368 | 3.2:+87358595 | MS.gene072878:CDS |
| GATGGTACCAGAGACTTGAA+TGG | 0.557463 | 3.2:+87359205 | MS.gene072878:CDS |
| AAGAACAAAGAAGGTCCAAA+GGG | 0.561141 | 3.2:+87358604 | MS.gene072878:CDS |
| GCAAATGTAACTCGTGGTTG+TGG | 0.569974 | 3.2:-87356929 | None:intergenic |
| TTATAGGAGCAACTTGATGA+TGG | 0.570385 | 3.2:+87359187 | MS.gene072878:intron |
| GAACACCATACTTTATAAGG+AGG | 0.576736 | 3.2:-87357709 | None:intergenic |
| TAAGAACAAAGAAGGTCCAA+AGG | 0.577271 | 3.2:+87358603 | MS.gene072878:CDS |
| AAGGGTTCAAAACGTTGGAA+AGG | 0.583511 | 3.2:+87358622 | MS.gene072878:CDS |
| GTCCAAAGGGTTCAAAACGT+TGG | 0.588871 | 3.2:+87358617 | MS.gene072878:CDS |
| TTTATTAGGATCGTCACAGA+AGG | 0.594701 | 3.2:+87358409 | MS.gene072878:intron |
| AACACCATACTTTATAAGGA+GGG | 0.603443 | 3.2:-87357708 | None:intergenic |
| AGAAGCTGTCGAGTTTCGTA+AGG | 0.604501 | 3.2:+87358444 | MS.gene072878:CDS |
| CCAGAACAAATTGTGAAGCA+AGG | 0.610911 | 3.2:+87356853 | MS.gene072878:CDS |
| ATTGAACTAGCTGATAGTGC+CGG | 0.644559 | 3.2:+87357011 | MS.gene072878:CDS |
| ATAGTGCCGGTGTACAACAA+AGG | 0.660446 | 3.2:+87357024 | MS.gene072878:CDS |
| TTTCTGGCAAATGTAACTCG+TGG | 0.662245 | 3.2:-87356935 | None:intergenic |
| CAAACAACTCATACTCACGT+TGG | 0.665525 | 3.2:-87358051 | None:intergenic |
| AGCATGCTTTGTGAAAAGCA+TGG | 0.679180 | 3.2:+87358075 | MS.gene072878:CDS |
| ATGGTGCAACACAAGTAAAG+GGG | 0.679306 | 3.2:+87358578 | MS.gene072878:CDS |
| AAGGTTAGGACTTAAGAATG+TGG | 0.679784 | 3.2:+87356872 | MS.gene072878:CDS |
| GGTACCAGAGACTTGAATGG+AGG | 0.689295 | 3.2:+87359208 | MS.gene072878:CDS |
| GAGTTCTGGAAAACTTACGG+TGG | 0.762461 | 3.2:+87356698 | MS.gene072878:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTAATAATACCAT+AGG | - | chr3.2:87358715-87358734 | None:intergenic | 10.0% |
| !!! | TATTAAAAATTTTATGAGTA+AGG | + | chr3.2:87357853-87357872 | MS.gene072878:CDS | 10.0% |
| !!! | AATTATTTTGGTTTTTATGT+AGG | + | chr3.2:87359042-87359061 | MS.gene072878:intron | 15.0% |
| !!! | ACTTGCATTTTTTAAATTAT+AGG | + | chr3.2:87359171-87359190 | MS.gene072878:intron | 15.0% |
| !!! | ATTATTTTGGTTTTTATGTA+GGG | + | chr3.2:87359043-87359062 | MS.gene072878:intron | 15.0% |
| !!! | GTTTAGTGTTTAAATTATTT+TGG | + | chr3.2:87359030-87359049 | MS.gene072878:intron | 15.0% |
| !! | AAAAAAAAGAGAAAGAAGTT+TGG | + | chr3.2:87357130-87357149 | MS.gene072878:intron | 20.0% |
| !! | ACGAAAAAAAAGGAATATAA+AGG | - | chr3.2:87358775-87358794 | None:intergenic | 20.0% |
| !! | TATCTCTTTAATATTGTTAG+AGG | - | chr3.2:87358545-87358564 | None:intergenic | 20.0% |
| !! | TTAAACACTAAACATAGTTA+AGG | - | chr3.2:87359023-87359042 | None:intergenic | 20.0% |
| !!! | TTGATTGATTACAGTTATTT+TGG | + | chr3.2:87357284-87357303 | MS.gene072878:intron | 20.0% |
| ! | ACACTTAGGAAATTTAATGA+AGG | + | chr3.2:87357604-87357623 | MS.gene072878:intron | 25.0% |
| ! | ACATTGTAAATCACTAATGT+TGG | - | chr3.2:87358896-87358915 | None:intergenic | 25.0% |
| ! | ACTTAGGAAATTTAATGAAG+GGG | + | chr3.2:87357606-87357625 | MS.gene072878:intron | 25.0% |
| ! | AGATTATACACACAGAAAAA+TGG | + | chr3.2:87356745-87356764 | MS.gene072878:intron | 25.0% |
| ! | CAAAATGGAATTAAACACTT+AGG | + | chr3.2:87357590-87357609 | MS.gene072878:intron | 25.0% |
| ! | CACTTAGGAAATTTAATGAA+GGG | + | chr3.2:87357605-87357624 | MS.gene072878:intron | 25.0% |
| ! | CTTAAAAGTCTTCATTCATA+TGG | + | chr3.2:87358240-87358259 | MS.gene072878:CDS | 25.0% |
| ! | GCAAAGAATGTACAATATAA+AGG | + | chr3.2:87357748-87357767 | MS.gene072878:CDS | 25.0% |
| ! | GTACAATATAAAGGAGAAAT+GGG | + | chr3.2:87357757-87357776 | MS.gene072878:CDS | 25.0% |
| ! | TATGCATTATTAAGCCATAT+AGG | - | chr3.2:87358952-87358971 | None:intergenic | 25.0% |
| ! | TGGAATAAGTCAAAAATAGT+AGG | - | chr3.2:87358034-87358053 | None:intergenic | 25.0% |
| ! | TGTACAATATAAAGGAGAAA+TGG | + | chr3.2:87357756-87357775 | MS.gene072878:CDS | 25.0% |
| !! | AAATTTTATGAGTAAGGACT+TGG | + | chr3.2:87357859-87357878 | MS.gene072878:CDS | 25.0% |
| !!! | TAGTTTTACTAGCTTATTGA+TGG | + | chr3.2:87359099-87359118 | MS.gene072878:CDS | 25.0% |
| AACACCATACTTTATAAGGA+GGG | - | chr3.2:87357711-87357730 | None:intergenic | 30.0% | |
| AAGAACAATTTGAAGATGGT+TGG | + | chr3.2:87357681-87357700 | MS.gene072878:CDS | 30.0% | |
| AAGATGTTGTAGAAGAAAAG+CGG | + | chr3.2:87357909-87357928 | MS.gene072878:CDS | 30.0% | |
| AGGTTTCCAAAAATGTAATG+AGG | + | chr3.2:87358815-87358834 | MS.gene072878:CDS | 30.0% | |
| AGTAGAGCTTAACAAACTAT+TGG | + | chr3.2:87358319-87358338 | MS.gene072878:intron | 30.0% | |
| ATAAGTAGTGAACAAGTGAA+TGG | + | chr3.2:87358517-87358536 | MS.gene072878:CDS | 30.0% | |
| ATGAAGAAGACTTTGACATT+AGG | + | chr3.2:87357791-87357810 | MS.gene072878:CDS | 30.0% | |
| ATGGTGTTCAGAAAAATGAT+TGG | + | chr3.2:87357723-87357742 | MS.gene072878:CDS | 30.0% | |
| ATTGCCAAGAAAAGGAATAT+GGG | + | chr3.2:87358127-87358146 | MS.gene072878:CDS | 30.0% | |
| ATTTCCTTATAACATTGTGC+TGG | - | chr3.2:87358379-87358398 | None:intergenic | 30.0% | |
| CTTAGGAAATTTAATGAAGG+GGG | + | chr3.2:87357607-87357626 | MS.gene072878:intron | 30.0% | |
| CTTATGTTATTGCCAAGAAA+AGG | + | chr3.2:87358119-87358138 | MS.gene072878:CDS | 30.0% | |
| GAGATATCAAGTACTAATGA+TGG | + | chr3.2:87358559-87358578 | MS.gene072878:CDS | 30.0% | |
| GATGAAGAACAATTTGAAGA+TGG | + | chr3.2:87357677-87357696 | MS.gene072878:CDS | 30.0% | |
| GATTTACTGAGTAAAGAAGT+AGG | + | chr3.2:87357056-87357075 | MS.gene072878:intron | 30.0% | |
| GTTCTTCTACACGAAAAAAA+AGG | - | chr3.2:87358785-87358804 | None:intergenic | 30.0% | |
| TACTGATCAAGACAAATCAA+TGG | + | chr3.2:87357505-87357524 | MS.gene072878:intron | 30.0% | |
| TATACACACAGAAAAATGGA+TGG | + | chr3.2:87356749-87356768 | MS.gene072878:intron | 30.0% | |
| TATTGCCAAGAAAAGGAATA+TGG | + | chr3.2:87358126-87358145 | MS.gene072878:CDS | 30.0% | |
| TCTGAACACCATACTTTATA+AGG | - | chr3.2:87357715-87357734 | None:intergenic | 30.0% | |
| TGAAGAAGACTTTGACATTA+GGG | + | chr3.2:87357792-87357811 | MS.gene072878:CDS | 30.0% | |
| TGATCAGTAAAAACTGTTTG+AGG | - | chr3.2:87357494-87357513 | None:intergenic | 30.0% | |
| TGTTATTAGCTAACCATAGA+TGG | - | chr3.2:87358982-87359001 | None:intergenic | 30.0% | |
| TTCACAAATTCAAGAACCTA+TGG | + | chr3.2:87358696-87358715 | MS.gene072878:CDS | 30.0% | |
| TTTCCAAAAATGTAATGAGG+CGG | + | chr3.2:87358818-87358837 | MS.gene072878:CDS | 30.0% | |
| ! | AATAGTAGGAGTATAAAGCT+TGG | - | chr3.2:87358020-87358039 | None:intergenic | 30.0% |
| ! | CTGAAAACCATATCAACTTT+TGG | - | chr3.2:87356659-87356678 | None:intergenic | 30.0% |
| ! | GACTTTAAGAAATGCATGTA+TGG | + | chr3.2:87357647-87357666 | MS.gene072878:intron | 30.0% |
| ! | TGTATTCTTTTCCAAATCGA+AGG | - | chr3.2:87358167-87358186 | None:intergenic | 30.0% |
| !! | AGCCTTATATTTTAAAGAGG+TGG | + | chr3.2:87358281-87358300 | MS.gene072878:intron | 30.0% |
| !! | CTCTTTAAAATATAAGGCTC+AGG | - | chr3.2:87358280-87358299 | None:intergenic | 30.0% |
| !! | CTGAGCCTTATATTTTAAAG+AGG | + | chr3.2:87358278-87358297 | MS.gene072878:CDS | 30.0% |
| !! | GTCCACCTCTTTAAAATATA+AGG | - | chr3.2:87358286-87358305 | None:intergenic | 30.0% |
| !!! | TCTTCAGTCTTGGAATTTTT+TGG | - | chr3.2:87357967-87357986 | None:intergenic | 30.0% |
| AAGAACAAAGAAGGTCCAAA+GGG | + | chr3.2:87358604-87358623 | MS.gene072878:CDS | 35.0% | |
| AAGGGGTTTAAGAACAAAGA+AGG | + | chr3.2:87358595-87358614 | MS.gene072878:CDS | 35.0% | |
| AAGGTTAGGACTTAAGAATG+TGG | + | chr3.2:87356872-87356891 | MS.gene072878:CDS | 35.0% | |
| ACAAATTGTGAAGCAAGGTT+AGG | + | chr3.2:87356858-87356877 | MS.gene072878:CDS | 35.0% | |
| ACATCCCTCCTTATAAAGTA+TGG | + | chr3.2:87357704-87357723 | MS.gene072878:CDS | 35.0% | |
| AGAAAAGGAATATGGGAGAA+TGG | + | chr3.2:87358134-87358153 | MS.gene072878:CDS | 35.0% | |
| AGAAAGAAGTTTGGTACAAG+GGG | + | chr3.2:87357139-87357158 | MS.gene072878:intron | 35.0% | |
| AGAGAAAGAAGTTTGGTACA+AGG | + | chr3.2:87357137-87357156 | MS.gene072878:intron | 35.0% | |
| ATCTCCAGCACAATGTTATA+AGG | + | chr3.2:87358372-87358391 | MS.gene072878:intron | 35.0% | |
| ATGGTTCAGTTTCTTCTTGT+AGG | + | chr3.2:87356768-87356787 | MS.gene072878:intron | 35.0% | |
| CAATATCTAGCTGATAAGCA+TGG | - | chr3.2:87357223-87357242 | None:intergenic | 35.0% | |
| CAATTACAAGTGCACCTATA+TGG | + | chr3.2:87358935-87358954 | MS.gene072878:CDS | 35.0% | |
| CATATAGGTGCACTTGTAAT+TGG | - | chr3.2:87358937-87358956 | None:intergenic | 35.0% | |
| GAACACCATACTTTATAAGG+AGG | - | chr3.2:87357712-87357731 | None:intergenic | 35.0% | |
| GAATGTGGATGGAAAATTGA+TGG | + | chr3.2:87356887-87356906 | MS.gene072878:CDS | 35.0% | |
| GAGAAAGAAGTTTGGTACAA+GGG | + | chr3.2:87357138-87357157 | MS.gene072878:intron | 35.0% | |
| GATGGAACATCTAGTCAATT+TGG | + | chr3.2:87359070-87359089 | MS.gene072878:CDS | 35.0% | |
| TAAGAACAAAGAAGGTCCAA+AGG | + | chr3.2:87358603-87358622 | MS.gene072878:CDS | 35.0% | |
| TAAGGAAGTTGCTGATGAAT+TGG | + | chr3.2:87358462-87358481 | MS.gene072878:CDS | 35.0% | |
| TAGTCATGTTGTAGAAGACT+TGG | + | chr3.2:87358345-87358364 | MS.gene072878:intron | 35.0% | |
| TGATAAGCATGGTAGAAAGT+TGG | - | chr3.2:87357212-87357231 | None:intergenic | 35.0% | |
| TGCATACAATCAACCATCTA+TGG | + | chr3.2:87358966-87358985 | MS.gene072878:CDS | 35.0% | |
| TGTCGTAAATTTGAGAGCTT+TGG | + | chr3.2:87358199-87358218 | MS.gene072878:CDS | 35.0% | |
| TTACTGAGTAAAGAAGTAGG+AGG | + | chr3.2:87357059-87357078 | MS.gene072878:intron | 35.0% | |
| TTAGGACTTAAGAATGTGGA+TGG | + | chr3.2:87356876-87356895 | MS.gene072878:CDS | 35.0% | |
| TTATAGGAGCAACTTGATGA+TGG | + | chr3.2:87359187-87359206 | MS.gene072878:intron | 35.0% | |
| TTCAAAACGTTGGAAAGGTT+GGG | + | chr3.2:87358627-87358646 | MS.gene072878:CDS | 35.0% | |
| TTCCAAAAATGTAATGAGGC+GGG | + | chr3.2:87358819-87358838 | MS.gene072878:CDS | 35.0% | |
| TTCTTGAATTTGTGAAGCAG+TGG | - | chr3.2:87358692-87358711 | None:intergenic | 35.0% | |
| TTTATTAGGATCGTCACAGA+AGG | + | chr3.2:87358409-87358428 | MS.gene072878:intron | 35.0% | |
| ! | AAATTTGTCCCCGCTTTATT+AGG | + | chr3.2:87358395-87358414 | MS.gene072878:intron | 35.0% |
| ! | ATCAGATCACCAATGTGTTT+TGG | + | chr3.2:87357246-87357265 | MS.gene072878:intron | 35.0% |
| ! | GACAACATATGAGTTGTTTC+TGG | - | chr3.2:87356954-87356973 | None:intergenic | 35.0% |
| ! | TCAGATCACCAATGTGTTTT+GGG | + | chr3.2:87357247-87357266 | MS.gene072878:intron | 35.0% |
| ! | TTCTCCCATATTCCTTTTCT+TGG | - | chr3.2:87358134-87358153 | None:intergenic | 35.0% |
| !! | TTGGAAGCCAAAAGTTGATA+TGG | + | chr3.2:87356649-87356668 | MS.gene072878:CDS | 35.0% |
| !!! | ATTGATGGTGCATGATTTTG+TGG | + | chr3.2:87356902-87356921 | MS.gene072878:CDS | 35.0% |
| AAAACTTACGGTGGTAAGGT+TGG | + | chr3.2:87356707-87356726 | MS.gene072878:intron | 40.0% | |
| AAGGGTTCAAAACGTTGGAA+AGG | + | chr3.2:87358622-87358641 | MS.gene072878:CDS | 40.0% | |
| AATCCTGAGATGATTGCTAG+TGG | - | chr3.2:87357359-87357378 | None:intergenic | 40.0% | |
| ACATAAACCATGGTAAGCTC+CGG | - | chr3.2:87357555-87357574 | None:intergenic | 40.0% | |
| AGCATGCTTTGTGAAAAGCA+TGG | + | chr3.2:87358075-87358094 | MS.gene072878:CDS | 40.0% | |
| ATGGTGCAACACAAGTAAAG+GGG | + | chr3.2:87358578-87358597 | MS.gene072878:CDS | 40.0% | |
| CAAAAATTACAGCTCCTCGA+TGG | - | chr3.2:87357388-87357407 | None:intergenic | 40.0% | |
| CAAACAACTCATACTCACGT+TGG | - | chr3.2:87358054-87358073 | None:intergenic | 40.0% | |
| CCAGAACAAATTGTGAAGCA+AGG | + | chr3.2:87356853-87356872 | MS.gene072878:CDS | 40.0% | |
| CTGTGACGATCCTAATAAAG+CGG | - | chr3.2:87358408-87358427 | None:intergenic | 40.0% | |
| CTTACCATGGTTTATGTACG+TGG | + | chr3.2:87357558-87357577 | MS.gene072878:intron | 40.0% | |
| CTTGTAATTGGCGATGCATA+TGG | - | chr3.2:87358925-87358944 | None:intergenic | 40.0% | |
| GAATACGAGTTCTTCAGTCT+TGG | - | chr3.2:87357977-87357996 | None:intergenic | 40.0% | |
| GATGGTGCAACACAAGTAAA+GGG | + | chr3.2:87358577-87358596 | MS.gene072878:CDS | 40.0% | |
| GTAGAAGAACAAAGCTAAGC+AGG | + | chr3.2:87358795-87358814 | MS.gene072878:intron | 40.0% | |
| GTTCAAAACGTTGGAAAGGT+TGG | + | chr3.2:87358626-87358645 | MS.gene072878:CDS | 40.0% | |
| TGTGACGATCCTAATAAAGC+GGG | - | chr3.2:87358407-87358426 | None:intergenic | 40.0% | |
| TTGGATTCTTTGTGCTTGTC+TGG | - | chr3.2:87356824-87356843 | None:intergenic | 40.0% | |
| TTTGTTCTGGTCTCTAGTCT+TGG | - | chr3.2:87356843-87356862 | None:intergenic | 40.0% | |
| ! | AGGTTTGTTTGCTGCAAAGA+AGG | + | chr3.2:87356788-87356807 | MS.gene072878:intron | 40.0% |
| ! | ATCCCGCCTCATTACATTTT+TGG | - | chr3.2:87358824-87358843 | None:intergenic | 40.0% |
| ! | ATTGAACTAGCTGATAGTGC+CGG | + | chr3.2:87357011-87357030 | MS.gene072878:CDS | 40.0% |
| ! | CATCGAGGAGCTGTAATTTT+TGG | + | chr3.2:87357386-87357405 | MS.gene072878:intron | 40.0% |
| ! | CCTTGCTTCACAATTTGTTC+TGG | - | chr3.2:87356856-87356875 | None:intergenic | 40.0% |
| ! | CGATTTCCTTTGTTGTACAC+CGG | - | chr3.2:87357033-87357052 | None:intergenic | 40.0% |
| ! | GTTTTTATGTAGGGAGACGA+TGG | + | chr3.2:87359052-87359071 | MS.gene072878:intron | 40.0% |
| ! | TGATGGTGCAACACAAGTAA+AGG | + | chr3.2:87358576-87358595 | MS.gene072878:CDS | 40.0% |
| ! | TTTCTGGCAAATGTAACTCG+TGG | - | chr3.2:87356938-87356957 | None:intergenic | 40.0% |
| !! | CAGTAGCTTTGAAGATGCTT+GGG | + | chr3.2:87356676-87356695 | MS.gene072878:CDS | 40.0% |
| !! | TCAGTAGCTTTGAAGATGCT+TGG | + | chr3.2:87356675-87356694 | MS.gene072878:CDS | 40.0% |
| !! | TGGGAGTTCTGGAAAACTTA+CGG | + | chr3.2:87356695-87356714 | MS.gene072878:CDS | 40.0% |
| !! | TTCCAACGTTTTGAACCCTT+TGG | - | chr3.2:87358622-87358641 | None:intergenic | 40.0% |
| AAACTGCTGAGTCATACGAG+TGG | + | chr3.2:87357429-87357448 | MS.gene072878:intron | 45.0% | |
| AAATTACAGCTCCTCGATGG+TGG | - | chr3.2:87357385-87357404 | None:intergenic | 45.0% | |
| AAGAAGTTTGGTACAAGGGG+AGG | + | chr3.2:87357142-87357161 | MS.gene072878:intron | 45.0% | |
| ACGTGGCACTTGATGCAAAA+TGG | + | chr3.2:87357575-87357594 | MS.gene072878:intron | 45.0% | |
| AGAAGCTGTCGAGTTTCGTA+AGG | + | chr3.2:87358444-87358463 | MS.gene072878:CDS | 45.0% | |
| AGACCACTAGCAATCATCTC+AGG | + | chr3.2:87357353-87357372 | MS.gene072878:intron | 45.0% | |
| AGCATCTGCCCAAAACACAT+TGG | - | chr3.2:87357258-87357277 | None:intergenic | 45.0% | |
| AGGTTGGGTAGAAACGAAAC+TGG | + | chr3.2:87358642-87358661 | MS.gene072878:CDS | 45.0% | |
| AGTAGGAGGCAGAACTAACT+TGG | + | chr3.2:87357073-87357092 | MS.gene072878:intron | 45.0% | |
| AGTGCCACGTACATAAACCA+TGG | - | chr3.2:87357565-87357584 | None:intergenic | 45.0% | |
| ATGGCAAGTGACCTTCGATT+TGG | + | chr3.2:87358153-87358172 | MS.gene072878:CDS | 45.0% | |
| CATAAACCATGGTAAGCTCC+GGG | - | chr3.2:87357554-87357573 | None:intergenic | 45.0% | |
| CTGGAAAACTTACGGTGGTA+AGG | + | chr3.2:87356703-87356722 | MS.gene072878:intron | 45.0% | |
| CTTTGCGCGTTTCTTTCTCT+TGG | - | chr3.2:87358668-87358687 | None:intergenic | 45.0% | |
| GATGGTACCAGAGACTTGAA+TGG | + | chr3.2:87359205-87359224 | MS.gene072878:CDS | 45.0% | |
| GCAAATGTAACTCGTGGTTG+TGG | - | chr3.2:87356932-87356951 | None:intergenic | 45.0% | |
| GTAGGAGGCAGAACTAACTT+GGG | + | chr3.2:87357074-87357093 | MS.gene072878:intron | 45.0% | |
| GTCCAAAGGGTTCAAAACGT+TGG | + | chr3.2:87358617-87358636 | MS.gene072878:CDS | 45.0% | |
| GTGACGATCCTAATAAAGCG+GGG | - | chr3.2:87358406-87358425 | None:intergenic | 45.0% | |
| TACGGTGGTAAGGTTGGATT+CGG | + | chr3.2:87356713-87356732 | MS.gene072878:intron | 45.0% | |
| TCAGGATTTAACCACCATCG+AGG | + | chr3.2:87357371-87357390 | MS.gene072878:intron | 45.0% | |
| TTACGAAACTCGACAGCTTC+TGG | - | chr3.2:87358445-87358464 | None:intergenic | 45.0% | |
| TTGAAGATGCTTGGGAGTTC+TGG | + | chr3.2:87356684-87356703 | MS.gene072878:CDS | 45.0% | |
| ! | AATGGCAAAAGCGTAAGCTG+AGG | + | chr3.2:87357523-87357542 | MS.gene072878:intron | 45.0% |
| !! | ATAGTGCCGGTGTACAACAA+AGG | + | chr3.2:87357024-87357043 | MS.gene072878:CDS | 45.0% |
| !! | ATGTGTTTTGGGCAGATGCT+AGG | + | chr3.2:87357258-87357277 | MS.gene072878:intron | 45.0% |
| !! | GAGTTCTGGAAAACTTACGG+TGG | + | chr3.2:87356698-87356717 | MS.gene072878:CDS | 45.0% |
| ACGGTGGTAAGGTTGGATTC+GGG | + | chr3.2:87356714-87356733 | MS.gene072878:intron | 50.0% | |
| GGTACCAGAGACTTGAATGG+AGG | + | chr3.2:87359208-87359227 | MS.gene072878:CDS | 50.0% | |
| AGTTTGGTACAAGGGGAGGC+TGG | + | chr3.2:87357146-87357165 | MS.gene072878:intron | 55.0% | |
| CAGGCCTCCATTCAAGTCTC+TGG | - | chr3.2:87359215-87359234 | None:intergenic | 55.0% | |
| CGGTGGTAAGGTTGGATTCG+GGG | + | chr3.2:87356715-87356734 | MS.gene072878:intron | 55.0% | |
| GCGTAAGCTGAGGTTATGCC+CGG | + | chr3.2:87357533-87357552 | MS.gene072878:intron | 55.0% | |
| GTAAGGTTGGATTCGGGGTG+AGG | + | chr3.2:87356720-87356739 | MS.gene072878:intron | 55.0% | |
| GTTATGCCCGGAGCTTACCA+TGG | + | chr3.2:87357545-87357564 | MS.gene072878:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 87356638 | 87359237 | 87356638 | ID=MS.gene072878 |
| chr3.2 | mRNA | 87356638 | 87359237 | 87356638 | ID=MS.gene072878.t1;Parent=MS.gene072878 |
| chr3.2 | exon | 87356638 | 87356719 | 87356638 | ID=MS.gene072878.t1.exon1;Parent=MS.gene072878.t1 |
| chr3.2 | CDS | 87356638 | 87356719 | 87356638 | ID=cds.MS.gene072878.t1;Parent=MS.gene072878.t1 |
| chr3.2 | exon | 87356790 | 87357073 | 87356790 | ID=MS.gene072878.t1.exon2;Parent=MS.gene072878.t1 |
| chr3.2 | CDS | 87356790 | 87357073 | 87356790 | ID=cds.MS.gene072878.t1;Parent=MS.gene072878.t1 |
| chr3.2 | exon | 87357656 | 87358299 | 87357656 | ID=MS.gene072878.t1.exon3;Parent=MS.gene072878.t1 |
| chr3.2 | CDS | 87357656 | 87358299 | 87357656 | ID=cds.MS.gene072878.t1;Parent=MS.gene072878.t1 |
| chr3.2 | exon | 87358417 | 87358717 | 87358417 | ID=MS.gene072878.t1.exon4;Parent=MS.gene072878.t1 |
| chr3.2 | CDS | 87358417 | 87358717 | 87358417 | ID=cds.MS.gene072878.t1;Parent=MS.gene072878.t1 |
| chr3.2 | exon | 87358799 | 87358987 | 87358799 | ID=MS.gene072878.t1.exon5;Parent=MS.gene072878.t1 |
| chr3.2 | CDS | 87358799 | 87358987 | 87358799 | ID=cds.MS.gene072878.t1;Parent=MS.gene072878.t1 |
| chr3.2 | exon | 87359064 | 87359120 | 87359064 | ID=MS.gene072878.t1.exon6;Parent=MS.gene072878.t1 |
| chr3.2 | CDS | 87359064 | 87359120 | 87359064 | ID=cds.MS.gene072878.t1;Parent=MS.gene072878.t1 |
| chr3.2 | exon | 87359193 | 87359237 | 87359193 | ID=MS.gene072878.t1.exon7;Parent=MS.gene072878.t1 |
| chr3.2 | CDS | 87359193 | 87359237 | 87359193 | ID=cds.MS.gene072878.t1;Parent=MS.gene072878.t1 |
| Gene Sequence |
| Protein sequence |
