AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07295

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07295.t1 MTR_1g086970 97.500 480 12 0 8 487 1 480 0.0 976
MS.gene07295.t1 MTR_7g109580 58.761 468 172 9 29 487 101 556 0.0 525
MS.gene07295.t1 MTR_2g034250 45.272 497 242 10 15 487 97 587 1.57e-130 391
MS.gene07295.t1 MTR_2g034260 44.534 494 250 10 6 487 105 586 4.30e-130 390
MS.gene07295.t1 MTR_2g034280 44.490 490 241 9 20 487 97 577 5.74e-127 381
MS.gene07295.t1 MTR_4g104020 30.691 391 244 13 108 485 144 520 3.65e-41 154
MS.gene07295.t1 MTR_7g027190 28.967 397 261 11 100 485 287 673 1.77e-39 152
MS.gene07295.t1 MTR_3g065980 26.161 409 256 10 99 486 158 541 1.47e-38 147
MS.gene07295.t1 MTR_8g442410 29.136 405 263 12 92 485 134 525 2.02e-38 147
MS.gene07295.t1 MTR_7g062120 28.351 388 254 11 108 485 367 740 2.47e-34 137
MS.gene07295.t1 MTR_4g102790 23.590 390 276 10 105 484 284 661 4.95e-32 130
MS.gene07295.t1 MTR_5g009080 26.078 464 253 15 91 485 36 478 2.07e-30 124
MS.gene07295.t1 MTR_4g064200 24.936 393 257 12 108 484 279 649 2.64e-29 122
MS.gene07295.t1 MTR_4g064150 25.879 398 263 11 103 484 351 732 1.55e-28 120
MS.gene07295.t1 MTR_2g026250 25.714 350 237 9 146 485 260 596 1.46e-27 116
MS.gene07295.t1 MTR_4g064120 24.422 389 264 9 102 475 243 616 2.20e-27 116
MS.gene07295.t1 MTR_7g074650 26.558 369 251 11 118 485 443 792 2.53e-27 116
MS.gene07295.t1 MTR_2g097410 25.127 394 259 12 108 484 366 740 1.63e-26 114
MS.gene07295.t1 MTR_3g056110 27.042 355 226 15 146 485 206 542 3.14e-26 112
MS.gene07295.t1 MTR_4g064160 24.936 389 264 12 108 484 311 683 3.43e-26 112
MS.gene07295.t1 MTR_2g097310 24.235 392 261 14 108 484 267 637 5.59e-26 112
MS.gene07295.t1 MTR_4g064180 24.235 392 261 11 102 475 243 616 2.09e-25 110
MS.gene07295.t1 MTR_2g097463 23.350 394 261 10 108 484 285 654 1.17e-24 107
MS.gene07295.t1 MTR_4g133660 24.069 349 242 8 146 484 207 542 4.98e-24 105
MS.gene07295.t1 MTR_2g097390 24.318 440 284 15 67 484 228 640 2.21e-23 103
MS.gene07295.t1 MTR_2g097473 22.905 358 251 9 137 484 311 653 3.93e-23 103
MS.gene07295.t1 MTR_4g097080 24.090 357 254 7 138 485 155 503 6.35e-23 102
MS.gene07295.t1 MTR_2g097467 22.680 388 271 9 108 484 284 653 1.17e-22 102
MS.gene07295.t1 MTR_2g097380 24.202 376 232 15 118 484 229 560 1.32e-22 101
MS.gene07295.t1 MTR_5g094450 25.000 392 263 14 109 485 157 532 2.16e-22 100
MS.gene07295.t1 MTR_2g082090 25.256 293 197 9 206 484 294 578 2.33e-22 100
MS.gene07295.t1 MTR_1g069725 25.513 341 231 11 147 484 142 462 5.16e-22 99.0
MS.gene07295.t1 MTR_2g097350 24.051 395 258 13 108 484 269 639 3.02e-21 97.4
MS.gene07295.t1 MTR_3g022830 24.685 397 228 11 146 486 56 437 2.10e-20 94.0
MS.gene07295.t1 MTR_4g076020 23.577 369 253 9 118 485 89 429 3.39e-20 93.2
MS.gene07295.t1 MTR_5g097480 23.143 350 246 10 146 485 208 544 3.42e-20 94.0
MS.gene07295.t1 MTR_4g076140 32.919 161 100 4 329 485 313 469 7.00e-20 92.4
MS.gene07295.t1 MTR_3g089055 27.526 287 186 9 213 485 287 565 1.77e-19 91.7
MS.gene07295.t1 MTR_3g089055 27.526 287 186 9 213 485 292 570 2.12e-19 91.7
MS.gene07295.t1 MTR_1g029420 27.431 288 183 11 214 485 315 592 9.08e-19 89.7
MS.gene07295.t1 MTR_4g077760 22.099 362 248 10 137 485 215 555 1.55e-18 89.0
MS.gene07295.t1 MTR_3g072710 22.829 403 277 12 103 484 110 499 1.84e-17 85.5
MS.gene07295.t1 MTR_5g015490 23.416 363 255 9 138 485 136 490 4.79e-17 84.0
MS.gene07295.t1 MTR_7g057230 23.684 380 267 11 112 484 293 656 4.97e-16 81.3
MS.gene07295.t1 MTR_4g026485 24.912 285 196 8 210 485 349 624 7.55e-15 77.4
MS.gene07295.t1 MTR_8g093070 24.557 395 251 15 106 484 132 495 9.77e-15 77.0
MS.gene07295.t1 MTR_5g058860 21.975 405 278 11 102 484 108 496 1.43e-14 76.3
MS.gene07295.t1 MTR_1g096030 23.262 374 232 16 146 487 111 461 1.06e-11 67.4
MS.gene07295.t1 MTR_2g099110 20.548 365 264 9 138 485 96 451 3.01e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07295.t1 AT3G03450 27.068 399 259 8 99 486 169 546 3.55e-43 160
MS.gene07295.t1 AT1G66350 25.907 386 263 7 102 486 144 507 1.72e-42 158
MS.gene07295.t1 AT2G01570 25.954 393 266 8 99 486 210 582 3.39e-40 153
MS.gene07295.t1 AT5G17490 27.806 392 249 10 104 486 151 517 1.21e-39 150
MS.gene07295.t1 AT1G14920 26.768 396 259 9 99 486 158 530 3.22e-39 149
MS.gene07295.t1 AT3G46600 26.750 400 243 14 105 485 3 371 5.88e-35 134
MS.gene07295.t1 AT2G29065 26.703 367 239 9 136 484 273 627 6.97e-35 138
MS.gene07295.t1 AT5G59450 27.250 400 246 14 108 485 222 598 1.07e-34 137
MS.gene07295.t1 AT3G46600 26.799 403 245 14 102 485 176 547 1.32e-34 136
MS.gene07295.t1 AT3G46600 26.799 403 245 14 102 485 208 579 2.36e-34 136
MS.gene07295.t1 AT1G63100 24.935 385 258 10 121 484 279 653 3.22e-30 124
MS.gene07295.t1 AT1G63100 24.935 385 258 10 121 484 254 628 3.95e-30 124
MS.gene07295.t1 AT3G54220 27.273 374 243 13 118 484 298 649 2.50e-29 122
MS.gene07295.t1 AT1G07530 24.505 404 262 11 101 484 384 764 8.21e-29 120
MS.gene07295.t1 AT4G17230 25.000 396 262 12 105 485 150 525 5.50e-28 117
MS.gene07295.t1 AT4G17230 25.000 396 262 12 105 485 150 525 5.50e-28 117
MS.gene07295.t1 AT5G41920 26.221 389 266 12 100 485 30 400 6.88e-28 115
MS.gene07295.t1 AT1G50420 24.889 450 252 15 104 485 48 479 4.90e-27 114
MS.gene07295.t1 AT2G29060 25.990 404 242 14 109 484 280 654 8.33e-27 114
MS.gene07295.t1 AT2G29060 25.990 404 242 14 109 484 317 691 1.04e-26 114
MS.gene07295.t1 AT1G07520 24.100 361 237 9 145 484 184 528 3.17e-26 112
MS.gene07295.t1 AT1G07520 24.100 361 237 9 145 484 184 528 3.17e-26 112
MS.gene07295.t1 AT1G07520 24.586 362 234 10 145 484 349 693 3.34e-26 112
MS.gene07295.t1 AT1G07520 24.586 362 234 10 145 484 348 692 3.72e-26 112
MS.gene07295.t1 AT1G50600 25.496 353 234 11 146 485 190 526 2.33e-24 106
MS.gene07295.t1 AT1G50600 25.496 353 234 11 146 485 265 601 4.18e-24 106
MS.gene07295.t1 AT1G50600 25.496 353 234 11 146 485 261 597 4.28e-24 106
MS.gene07295.t1 AT1G55580 25.668 374 241 11 146 485 75 445 1.94e-23 103
MS.gene07295.t1 AT2G37650 24.679 389 265 9 108 485 342 713 4.53e-23 103
MS.gene07295.t1 AT2G37650 24.679 389 265 9 108 485 330 701 4.58e-23 103
MS.gene07295.t1 AT2G04890 24.251 367 249 11 130 485 65 413 1.25e-22 100
MS.gene07295.t1 AT5G48150 23.499 383 265 10 118 485 121 490 7.14e-22 99.0
MS.gene07295.t1 AT5G48150 23.499 383 265 10 118 485 121 490 7.14e-22 99.0
MS.gene07295.t1 AT5G48150 23.499 383 265 10 118 485 121 490 7.14e-22 99.0
MS.gene07295.t1 AT5G48150 23.499 383 265 10 118 485 121 490 7.14e-22 99.0
MS.gene07295.t1 AT4G37650 22.821 390 276 8 114 485 147 529 7.71e-21 95.9
MS.gene07295.t1 AT5G66770 22.380 353 245 10 145 485 249 584 1.57e-17 85.9
MS.gene07295.t1 AT3G50650 22.526 293 213 7 206 485 251 542 3.18e-15 78.6
MS.gene07295.t1 AT3G49950 24.749 299 199 8 206 484 115 407 1.51e-14 75.9
MS.gene07295.t1 AT4G08250 24.519 416 275 17 87 484 82 476 2.76e-14 75.5
MS.gene07295.t1 AT4G36710 22.946 353 237 15 146 486 157 486 1.57e-11 67.0
MS.gene07295.t1 AT1G21450 23.183 289 197 9 213 485 314 593 2.32e-11 66.6

Find 68 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGTAAGTGTTTAATAAT+TGG 0.167586 1.4:-69315808 MS.gene07295:CDS
CATTTGATTCATCTTAATAT+TGG 0.236657 1.4:-69316513 MS.gene07295:CDS
GACGGAATTGATTGATAAAA+TGG 0.247556 1.4:-69316649 MS.gene07295:CDS
AATAATCTTTACATTCCTTA+TGG 0.249550 1.4:-69316945 MS.gene07295:CDS
CATGCCACAGTGATGAGTTT+TGG 0.263501 1.4:+69316970 None:intergenic
ATTCCTTATGGAACTGTTCT+TGG 0.265945 1.4:-69316933 MS.gene07295:CDS
TCGCAAACAAGGGTGAATTA+TGG 0.302490 1.4:+69316127 None:intergenic
AAGGCTAAGTTAGAAGAAAT+TGG 0.303167 1.4:-69316393 MS.gene07295:CDS
ATGAATGAAAGTGGAAATAT+TGG 0.333082 1.4:-69316786 MS.gene07295:CDS
TCCATGTTCACTTAGGACTA+TGG 0.336208 1.4:-69316238 MS.gene07295:CDS
GATAAGAAACATTGTTGGTT+TGG 0.346018 1.4:-69315992 MS.gene07295:CDS
ATTCTGAAGATCACAGCTAT+TGG 0.354564 1.4:-69316426 MS.gene07295:CDS
AATCAAGTAATGCAATTTGC+TGG 0.354696 1.4:-69316579 MS.gene07295:CDS
TTATGAGTGTAGAGTGATAA+TGG 0.355610 1.4:-69316034 MS.gene07295:CDS
GAAGATATAATAACACTTGC+AGG 0.358002 1.4:-69317005 MS.gene07295:CDS
ATTCACCCTTGTTTGCGAAT+AGG 0.360715 1.4:-69316122 MS.gene07295:CDS
CTTGAAGTGCTTGAGAGAAA+TGG 0.363368 1.4:+69316739 None:intergenic
CAAGCTGAGACTGAATGAAT+TGG 0.383878 1.4:+69315772 None:intergenic
AGGTATAGAATGGTAGAAAC+TGG 0.390006 1.4:-69315910 MS.gene07295:CDS
GGAATGTGAAGATTGATGTT+TGG 0.392726 1.4:-69315948 MS.gene07295:CDS
TCAAGTACTATCATAATAAA+CGG 0.431397 1.4:+69316162 None:intergenic
CGGACGAGGAAAGATGAAAC+TGG 0.435732 1.4:-69316697 MS.gene07295:CDS
TTTCATCTCATGAATGAAAG+TGG 0.437460 1.4:-69316795 MS.gene07295:CDS
CAGTTTCATCTTTCCTCGTC+CGG 0.439195 1.4:+69316698 None:intergenic
GAGAGAATCAACAGAGAAAC+CGG 0.442776 1.4:-69316717 MS.gene07295:CDS
CAATATTAAGATGAATCAAA+TGG 0.442889 1.4:+69316514 None:intergenic
AATTGCATTACTTGATTGAA+AGG 0.446453 1.4:+69316585 None:intergenic
ATTCATCTTAATATTGGATG+TGG 0.448243 1.4:-69316507 MS.gene07295:CDS
TTTATTCTCCATGTTCACTT+AGG 0.457172 1.4:-69316245 MS.gene07295:CDS
TGTTGATACTTGTATAAAAG+AGG 0.464976 1.4:-69316058 MS.gene07295:CDS
GGTATCAAATTCTGATGGCT+TGG 0.468081 1.4:-69316217 MS.gene07295:CDS
GTGATCTTCAGAATTTCAAC+CGG 0.468897 1.4:+69316435 None:intergenic
ATCAATTCCACGGCTTAAGC+AGG 0.469908 1.4:-69317153 MS.gene07295:CDS
TGCTGGTGTACAAGCTATAG+TGG 0.474092 1.4:-69316562 MS.gene07295:CDS
GAAGGGATAAGAAACATTGT+TGG 0.474796 1.4:-69315997 MS.gene07295:CDS
TGTTCTTGGAAGCTTGTTGT+CGG 0.475836 1.4:-69316919 MS.gene07295:CDS
GTTCTTTGCAAGGTATAGAA+TGG 0.484270 1.4:-69315920 MS.gene07295:CDS
AAGATGAAGAAAGGAAGGTT+AGG 0.502253 1.4:-69315969 MS.gene07295:CDS
TGTTTAATAATTGGATGGAA+GGG 0.503361 1.4:-69315799 MS.gene07295:CDS
CAATTCATTCAGTCTCAGCT+TGG 0.509421 1.4:-69315771 MS.gene07295:CDS
TTGGTTTGGAAGATGAAGAA+AGG 0.515913 1.4:-69315978 MS.gene07295:CDS
GTGTTTAATAATTGGATGGA+AGG 0.523650 1.4:-69315800 MS.gene07295:CDS
GTTTAATAATTGGATGGAAG+GGG 0.527241 1.4:-69315798 MS.gene07295:CDS
TTTGGAAGATGAAGAAAGGA+AGG 0.529462 1.4:-69315974 MS.gene07295:CDS
CTTCCAAGAACAGTTCCATA+AGG 0.531300 1.4:+69316930 None:intergenic
AACAAACCTATTCGCAAACA+AGG 0.532041 1.4:+69316116 None:intergenic
GTAAGTGTTTAATAATTGGA+TGG 0.532866 1.4:-69315804 MS.gene07295:CDS
AAGCCGTGGAATTGATATCA+TGG 0.533713 1.4:+69317160 None:intergenic
TCAAGTGATGCTAAAGAAGA+TGG 0.542006 1.4:+69317116 None:intergenic
TTTGGAGAAGGTTCTTTGCA+AGG 0.543910 1.4:-69315930 MS.gene07295:CDS
ATGGAAGCAATATTATCTGA+AGG 0.550756 1.4:-69316015 MS.gene07295:CDS
AGTAGACCGCAAGGAAAAGC+CGG 0.553680 1.4:-69316454 MS.gene07295:CDS
CTAGCAGCAGCTGAGAGAGT+AGG 0.586422 1.4:-69316858 MS.gene07295:CDS
ACCATAGTCCTAAGTGAACA+TGG 0.589256 1.4:+69316237 None:intergenic
TGGAAGCAATATTATCTGAA+GGG 0.593391 1.4:-69316014 MS.gene07295:CDS
TGAAGATTGATGTTTGGAGA+AGG 0.596614 1.4:-69315942 MS.gene07295:CDS
TGGCTTGGAGAATTTGATGA+AGG 0.603211 1.4:-69316202 MS.gene07295:CDS
ACTATGGTATCAAATTCTGA+TGG 0.608580 1.4:-69316222 MS.gene07295:CDS
AAATGAGAGAAACAAGGAGA+CGG 0.612044 1.4:-69316667 MS.gene07295:CDS
ATCAACAGAGAAACCGGACG+AGG 0.613864 1.4:-69316711 MS.gene07295:CDS
AAGCCATGATATCAATTCCA+CGG 0.616214 1.4:-69317163 MS.gene07295:CDS
ATTTGCACCTGCTTAAGCCG+TGG 0.626082 1.4:+69317146 None:intergenic
GCAAGCATTAGTAGACCGCA+AGG 0.627501 1.4:-69316463 MS.gene07295:CDS
ACAAACCTATTCGCAAACAA+GGG 0.673185 1.4:+69316117 None:intergenic
TAGATCAAATGAGAGAAACA+AGG 0.680410 1.4:-69316673 MS.gene07295:CDS
GATGCTAAAGAAGATGGTGG+TGG 0.682167 1.4:+69317122 None:intergenic
AGTGATGCTAAAGAAGATGG+TGG 0.725977 1.4:+69317119 None:intergenic
ATATCCAAAACTCATCACTG+TGG 0.776374 1.4:-69316974 MS.gene07295:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACTATGTTATATAAAA+AGG + chr1.4:69316630-69316649 None:intergenic 10.0%
!! AAAACTATGTTATATAAAAA+GGG + chr1.4:69316629-69316648 None:intergenic 10.0%
!! AATAATCTTTACATTCCTTA+TGG - chr1.4:69316014-69316033 MS.gene07295:CDS 20.0%
!! AATGGTAAGTGTTTAATAAT+TGG - chr1.4:69317151-69317170 MS.gene07295:CDS 20.0%
!! CAATATTAAGATGAATCAAA+TGG + chr1.4:69316448-69316467 None:intergenic 20.0%
!! CATTTGATTCATCTTAATAT+TGG - chr1.4:69316446-69316465 MS.gene07295:CDS 20.0%
!! TCAAGTACTATCATAATAAA+CGG + chr1.4:69316800-69316819 None:intergenic 20.0%
!!! TTTTGTACTATAGACAAAAA+TGG - chr1.4:69317133-69317152 MS.gene07295:CDS 20.0%
! AATTGCATTACTTGATTGAA+AGG + chr1.4:69316377-69316396 None:intergenic 25.0%
! ATGAATGAAAGTGGAAATAT+TGG - chr1.4:69316173-69316192 MS.gene07295:CDS 25.0%
! ATTCATCTTAATATTGGATG+TGG - chr1.4:69316452-69316471 MS.gene07295:CDS 25.0%
! CTTGAGCTATTGAAAAATTA+TGG - chr1.4:69315861-69315880 MS.gene07295:CDS 25.0%
! GTAAGTGTTTAATAATTGGA+TGG - chr1.4:69317155-69317174 MS.gene07295:CDS 25.0%
! TGTTGATACTTGTATAAAAG+AGG - chr1.4:69316901-69316920 MS.gene07295:CDS 25.0%
! TGTTTAATAATTGGATGGAA+GGG - chr1.4:69317160-69317179 MS.gene07295:CDS 25.0%
! TTACTAAAAAGTTTGACTGT+GGG - chr1.4:69317107-69317126 MS.gene07295:CDS 25.0%
!! ATATAAAAAGGGTATGTTCA+AGG + chr1.4:69316618-69316637 None:intergenic 25.0%
AAGGCTAAGTTAGAAGAAAT+TGG - chr1.4:69316566-69316585 MS.gene07295:CDS 30.0%
AATCAAGTAATGCAATTTGC+TGG - chr1.4:69316380-69316399 MS.gene07295:CDS 30.0%
ACTATGGTATCAAATTCTGA+TGG - chr1.4:69316737-69316756 MS.gene07295:CDS 30.0%
ATGGAAGCAATATTATCTGA+AGG - chr1.4:69316944-69316963 MS.gene07295:CDS 30.0%
GAAGATATAATAACACTTGC+AGG - chr1.4:69315954-69315973 MS.gene07295:CDS 30.0%
GACGGAATTGATTGATAAAA+TGG - chr1.4:69316310-69316329 MS.gene07295:CDS 30.0%
GTGTTTAATAATTGGATGGA+AGG - chr1.4:69317159-69317178 MS.gene07295:CDS 30.0%
GTTACTAAAAAGTTTGACTG+TGG - chr1.4:69317106-69317125 MS.gene07295:CDS 30.0%
GTTTAATAATTGGATGGAAG+GGG - chr1.4:69317161-69317180 MS.gene07295:CDS 30.0%
TAGATCAAATGAGAGAAACA+AGG - chr1.4:69316286-69316305 MS.gene07295:CDS 30.0%
TGGAAGCAATATTATCTGAA+GGG - chr1.4:69316945-69316964 MS.gene07295:CDS 30.0%
TTATGAGTGTAGAGTGATAA+TGG - chr1.4:69316925-69316944 MS.gene07295:CDS 30.0%
TTTATTCTCCATGTTCACTT+AGG - chr1.4:69316714-69316733 MS.gene07295:CDS 30.0%
TTTCATCTCATGAATGAAAG+TGG - chr1.4:69316164-69316183 MS.gene07295:CDS 30.0%
! AGCTATTGGATTTTCTAACA+AGG - chr1.4:69316547-69316566 MS.gene07295:CDS 30.0%
! AGTTTTTGTTGAAGATGCTA+TGG - chr1.4:69316643-69316662 MS.gene07295:CDS 30.0%
! GATAAGAAACATTGTTGGTT+TGG - chr1.4:69316967-69316986 MS.gene07295:CDS 30.0%
AAATGAGAGAAACAAGGAGA+CGG - chr1.4:69316292-69316311 MS.gene07295:CDS 35.0%
AACAAACCTATTCGCAAACA+AGG + chr1.4:69316846-69316865 None:intergenic 35.0%
AAGATGAAGAAAGGAAGGTT+AGG - chr1.4:69316990-69317009 MS.gene07295:CDS 35.0%
AAGCCATGATATCAATTCCA+CGG - chr1.4:69315796-69315815 MS.gene07295:CDS 35.0%
ACAAACCTATTCGCAAACAA+GGG + chr1.4:69316845-69316864 None:intergenic 35.0%
AGGTATAGAATGGTAGAAAC+TGG - chr1.4:69317049-69317068 MS.gene07295:CDS 35.0%
ATATCCAAAACTCATCACTG+TGG - chr1.4:69315985-69316004 MS.gene07295:CDS 35.0%
ATTCCTTATGGAACTGTTCT+TGG - chr1.4:69316026-69316045 MS.gene07295:CDS 35.0%
GAAGGGATAAGAAACATTGT+TGG - chr1.4:69316962-69316981 MS.gene07295:CDS 35.0%
GGAATGTGAAGATTGATGTT+TGG - chr1.4:69317011-69317030 MS.gene07295:CDS 35.0%
GTGATCTTCAGAATTTCAAC+CGG + chr1.4:69316527-69316546 None:intergenic 35.0%
GTTCTTTGCAAGGTATAGAA+TGG - chr1.4:69317039-69317058 MS.gene07295:CDS 35.0%
TCAAGTGATGCTAAAGAAGA+TGG + chr1.4:69315846-69315865 None:intergenic 35.0%
TGAAGATTGATGTTTGGAGA+AGG - chr1.4:69317017-69317036 MS.gene07295:CDS 35.0%
TTTGGAAGATGAAGAAAGGA+AGG - chr1.4:69316985-69317004 MS.gene07295:CDS 35.0%
! ATTCTGAAGATCACAGCTAT+TGG - chr1.4:69316533-69316552 MS.gene07295:CDS 35.0%
! TCTTCAGTTGACAACTTTTG+TGG + chr1.4:69315939-69315958 None:intergenic 35.0%
!! TTGGTTTGGAAGATGAAGAA+AGG - chr1.4:69316981-69317000 MS.gene07295:CDS 35.0%
AAGCCGTGGAATTGATATCA+TGG + chr1.4:69315802-69315821 None:intergenic 40.0%
ACCATAGTCCTAAGTGAACA+TGG + chr1.4:69316725-69316744 None:intergenic 40.0%
AGTGATGCTAAAGAAGATGG+TGG + chr1.4:69315843-69315862 None:intergenic 40.0%
CAAGCTGAGACTGAATGAAT+TGG + chr1.4:69317190-69317209 None:intergenic 40.0%
CAATTCATTCAGTCTCAGCT+TGG - chr1.4:69317188-69317207 MS.gene07295:CDS 40.0%
CTTCCAAGAACAGTTCCATA+AGG + chr1.4:69316032-69316051 None:intergenic 40.0%
GAGAGAATCAACAGAGAAAC+CGG - chr1.4:69316242-69316261 MS.gene07295:CDS 40.0%
GGTATCAAATTCTGATGGCT+TGG - chr1.4:69316742-69316761 MS.gene07295:CDS 40.0%
TCCATGTTCACTTAGGACTA+TGG - chr1.4:69316721-69316740 MS.gene07295:CDS 40.0%
TCGCAAACAAGGGTGAATTA+TGG + chr1.4:69316835-69316854 None:intergenic 40.0%
TTTGGAGAAGGTTCTTTGCA+AGG - chr1.4:69317029-69317048 MS.gene07295:CDS 40.0%
! ATTCACCCTTGTTTGCGAAT+AGG - chr1.4:69316837-69316856 MS.gene07295:CDS 40.0%
! CTTGAAGTGCTTGAGAGAAA+TGG + chr1.4:69316223-69316242 None:intergenic 40.0%
! TGGCTTGGAGAATTTGATGA+AGG - chr1.4:69316757-69316776 MS.gene07295:CDS 40.0%
!! TGTTCTTGGAAGCTTGTTGT+CGG - chr1.4:69316040-69316059 MS.gene07295:CDS 40.0%
ATCAATTCCACGGCTTAAGC+AGG - chr1.4:69315806-69315825 MS.gene07295:CDS 45.0%
CAGTTTCATCTTTCCTCGTC+CGG + chr1.4:69316264-69316283 None:intergenic 45.0%
TGCTGGTGTACAAGCTATAG+TGG - chr1.4:69316397-69316416 MS.gene07295:CDS 45.0%
! CATGCCACAGTGATGAGTTT+TGG + chr1.4:69315992-69316011 None:intergenic 45.0%
! GATGCTAAAGAAGATGGTGG+TGG + chr1.4:69315840-69315859 None:intergenic 45.0%
!! TTTCAACCGGCTTTTCCTTG+CGG + chr1.4:69316514-69316533 None:intergenic 45.0%
AGTAGACCGCAAGGAAAAGC+CGG - chr1.4:69316505-69316524 MS.gene07295:CDS 50.0%
ATCAACAGAGAAACCGGACG+AGG - chr1.4:69316248-69316267 MS.gene07295:CDS 50.0%
ATTTGCACCTGCTTAAGCCG+TGG + chr1.4:69315816-69315835 None:intergenic 50.0%
CGGACGAGGAAAGATGAAAC+TGG - chr1.4:69316262-69316281 MS.gene07295:CDS 50.0%
GCAAGCATTAGTAGACCGCA+AGG - chr1.4:69316496-69316515 MS.gene07295:CDS 50.0%
CTAGCAGCAGCTGAGAGAGT+AGG - chr1.4:69316101-69316120 MS.gene07295:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 69315759 69317222 69315759 ID=MS.gene07295
chr1.4 mRNA 69315759 69317222 69315759 ID=MS.gene07295.t1;Parent=MS.gene07295
chr1.4 exon 69315759 69317222 69315759 ID=MS.gene07295.t1.exon1;Parent=MS.gene07295.t1
chr1.4 CDS 69315759 69317222 69315759 ID=cds.MS.gene07295.t1;Parent=MS.gene07295.t1
Gene Sequence

>MS.gene07295

ATGGAGAAGTTACTACAAGATCTAGAGCAAGAAAATCAAGCCATGATATCAATTCCACGGCTTAAGCAGGTGCAAATGCCACCACCATCTTCTTTAGCATCACTTGAGCTATTGAAAAATTATGGAAGCAAGTTCAATAAGCAAAAAAGCAAAAGCAATGTTGAAACTTGTGTAAGTCCACAAAAGTTGTCAACTGAAGATATAATAACACTTGCAGGAACGAAGTATATCCAAAACTCATCACTGTGGCATGATAATAATCTTTACATTCCTTATGGAACTGTTCTTGGAAGCTTGTTGTCGGACGAAGAAAATAAACAAGTTGAACTAGCTCAGTTTGTTCTAGCAGCAGCTGAGAGAGTAGGTTGTCAACAATTTGAACGTGCAAACATGTTACTTTCACATTTTCATCTCATGAATGAAAGTGGAAATATTGGAAGCACAGTTCAGAGACTTCTTTTCCATTTCTCTCAAGCACTTCAAGAGAGAATCAACAGAGAAACCGGACGAGGAAAGATGAAACTGGATAGATCAAATGAGAGAAACAAGGAGACGGAATTGATTGATAAAATGGAATTAGATACTAACATAGTAGTTAAATGTCATCAAAAAATTCCTTTCAATCAAGTAATGCAATTTGCTGGTGTACAAGCTATAGTGGAACATGTTGCATCACAAACAAAAATCCATTTGATTCATCTTAATATTGGATGTGGAGTGATGAGTACATGTTTCATGCAAGCATTAGTAGACCGCAAGGAAAAGCCGGTTGAAATTCTGAAGATCACAGCTATTGGATTTTCTAACAAGGCTAAGTTAGAAGAAATTGGCAAAAGTTTAATGAGTTTTGCTGAATCCTTGAACATACCCTTTTTATATAACATAGTTTTTGTTGAAGATGCTATGGAGATTAAGTTAGATCAATTTGAAATTGAATATGATGAAGCTGTTGCTATTTATTCTCCATGTTCACTTAGGACTATGGTATCAAATTCTGATGGCTTGGAGAATTTGATGAAGGTGATAAGAAAAATGAAACCGTTTATTATGATAGTACTTGAACTTGAAGCAAACCATAATTCACCCTTGTTTGCGAATAGGTTTGTTGAAGCATTGTTCTTTTACTCAGCATTTTTTGACTGTGTTGATACTTGTATAAAAGAGGATTATGAGTGTAGAGTGATAATGGAAGCAATATTATCTGAAGGGATAAGAAACATTGTTGGTTTGGAAGATGAAGAAAGGAAGGTTAGGAATGTGAAGATTGATGTTTGGAGAAGGTTCTTTGCAAGGTATAGAATGGTAGAAACTGGATTCAGTGAGTCTTCAATTTATCAAGCTAATTTAGTTACTAAAAAGTTTGACTGTGGGAAGTTTTGTACTATAGACAAAAATGGTAAGTGTTTAATAATTGGATGGAAGGGGACTCCAATTCATTCAGTCTCAGCTTGGAAGTTTCTTTGA
Protein sequence

>MS.gene07295.t1

MEKLLQDLEQENQAMISIPRLKQVQMPPPSSLASLELLKNYGSKFNKQKSKSNVETCVSPQKLSTEDIITLAGTKYIQNSSLWHDNNLYIPYGTVLGSLLSDEENKQVELAQFVLAAAERVGCQQFERANMLLSHFHLMNESGNIGSTVQRLLFHFSQALQERINRETGRGKMKLDRSNERNKETELIDKMELDTNIVVKCHQKIPFNQVMQFAGVQAIVEHVASQTKIHLIHLNIGCGVMSTCFMQALVDRKEKPVEILKITAIGFSNKAKLEEIGKSLMSFAESLNIPFLYNIVFVEDAMEIKLDQFEIEYDEAVAIYSPCSLRTMVSNSDGLENLMKVIRKMKPFIMIVLELEANHNSPLFANRFVEALFFYSAFFDCVDTCIKEDYECRVIMEAILSEGIRNIVGLEDEERKVRNVKIDVWRRFFARYRMVETGFSESSIYQANLVTKKFDCGKFCTIDKNGKCLIIGWKGTPIHSVSAWKFL