AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07299

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07299.t1 MTR_1g086970 97.500 480 12 0 8 487 1 480 0.0 976
MS.gene07299.t1 MTR_7g109580 58.761 468 172 9 29 487 101 556 0.0 525
MS.gene07299.t1 MTR_2g034250 45.272 497 242 10 15 487 97 587 1.57e-130 391
MS.gene07299.t1 MTR_2g034260 44.534 494 250 10 6 487 105 586 4.30e-130 390
MS.gene07299.t1 MTR_2g034280 44.490 490 241 9 20 487 97 577 5.74e-127 381
MS.gene07299.t1 MTR_4g104020 30.691 391 244 13 108 485 144 520 3.65e-41 154
MS.gene07299.t1 MTR_7g027190 28.967 397 261 11 100 485 287 673 1.77e-39 152
MS.gene07299.t1 MTR_3g065980 26.161 409 256 10 99 486 158 541 1.47e-38 147
MS.gene07299.t1 MTR_8g442410 29.136 405 263 12 92 485 134 525 2.02e-38 147
MS.gene07299.t1 MTR_7g062120 28.351 388 254 11 108 485 367 740 2.47e-34 137
MS.gene07299.t1 MTR_4g102790 23.590 390 276 10 105 484 284 661 4.95e-32 130
MS.gene07299.t1 MTR_5g009080 26.078 464 253 15 91 485 36 478 2.07e-30 124
MS.gene07299.t1 MTR_4g064200 24.936 393 257 12 108 484 279 649 2.64e-29 122
MS.gene07299.t1 MTR_4g064150 25.879 398 263 11 103 484 351 732 1.55e-28 120
MS.gene07299.t1 MTR_2g026250 25.714 350 237 9 146 485 260 596 1.46e-27 116
MS.gene07299.t1 MTR_4g064120 24.422 389 264 9 102 475 243 616 2.20e-27 116
MS.gene07299.t1 MTR_7g074650 26.558 369 251 11 118 485 443 792 2.53e-27 116
MS.gene07299.t1 MTR_2g097410 25.127 394 259 12 108 484 366 740 1.63e-26 114
MS.gene07299.t1 MTR_3g056110 27.042 355 226 15 146 485 206 542 3.14e-26 112
MS.gene07299.t1 MTR_4g064160 24.936 389 264 12 108 484 311 683 3.43e-26 112
MS.gene07299.t1 MTR_2g097310 24.235 392 261 14 108 484 267 637 5.59e-26 112
MS.gene07299.t1 MTR_4g064180 24.235 392 261 11 102 475 243 616 2.09e-25 110
MS.gene07299.t1 MTR_2g097463 23.350 394 261 10 108 484 285 654 1.17e-24 107
MS.gene07299.t1 MTR_4g133660 24.069 349 242 8 146 484 207 542 4.98e-24 105
MS.gene07299.t1 MTR_2g097390 24.318 440 284 15 67 484 228 640 2.21e-23 103
MS.gene07299.t1 MTR_2g097473 22.905 358 251 9 137 484 311 653 3.93e-23 103
MS.gene07299.t1 MTR_4g097080 24.090 357 254 7 138 485 155 503 6.35e-23 102
MS.gene07299.t1 MTR_2g097467 22.680 388 271 9 108 484 284 653 1.17e-22 102
MS.gene07299.t1 MTR_2g097380 24.202 376 232 15 118 484 229 560 1.32e-22 101
MS.gene07299.t1 MTR_5g094450 25.000 392 263 14 109 485 157 532 2.16e-22 100
MS.gene07299.t1 MTR_2g082090 25.256 293 197 9 206 484 294 578 2.33e-22 100
MS.gene07299.t1 MTR_1g069725 25.513 341 231 11 147 484 142 462 5.16e-22 99.0
MS.gene07299.t1 MTR_2g097350 24.051 395 258 13 108 484 269 639 3.02e-21 97.4
MS.gene07299.t1 MTR_3g022830 24.685 397 228 11 146 486 56 437 2.10e-20 94.0
MS.gene07299.t1 MTR_4g076020 23.577 369 253 9 118 485 89 429 3.39e-20 93.2
MS.gene07299.t1 MTR_5g097480 23.143 350 246 10 146 485 208 544 3.42e-20 94.0
MS.gene07299.t1 MTR_4g076140 32.919 161 100 4 329 485 313 469 7.00e-20 92.4
MS.gene07299.t1 MTR_3g089055 27.526 287 186 9 213 485 287 565 1.77e-19 91.7
MS.gene07299.t1 MTR_3g089055 27.526 287 186 9 213 485 292 570 2.12e-19 91.7
MS.gene07299.t1 MTR_1g029420 27.431 288 183 11 214 485 315 592 9.08e-19 89.7
MS.gene07299.t1 MTR_4g077760 22.099 362 248 10 137 485 215 555 1.55e-18 89.0
MS.gene07299.t1 MTR_3g072710 22.829 403 277 12 103 484 110 499 1.84e-17 85.5
MS.gene07299.t1 MTR_5g015490 23.416 363 255 9 138 485 136 490 4.79e-17 84.0
MS.gene07299.t1 MTR_7g057230 23.684 380 267 11 112 484 293 656 4.97e-16 81.3
MS.gene07299.t1 MTR_4g026485 24.912 285 196 8 210 485 349 624 7.55e-15 77.4
MS.gene07299.t1 MTR_8g093070 24.557 395 251 15 106 484 132 495 9.77e-15 77.0
MS.gene07299.t1 MTR_5g058860 21.975 405 278 11 102 484 108 496 1.43e-14 76.3
MS.gene07299.t1 MTR_1g096030 23.262 374 232 16 146 487 111 461 1.06e-11 67.4
MS.gene07299.t1 MTR_2g099110 20.548 365 264 9 138 485 96 451 3.01e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07299.t1 AT3G03450 27.068 399 259 8 99 486 169 546 3.55e-43 160
MS.gene07299.t1 AT1G66350 25.907 386 263 7 102 486 144 507 1.72e-42 158
MS.gene07299.t1 AT2G01570 25.954 393 266 8 99 486 210 582 3.39e-40 153
MS.gene07299.t1 AT5G17490 27.806 392 249 10 104 486 151 517 1.21e-39 150
MS.gene07299.t1 AT1G14920 26.768 396 259 9 99 486 158 530 3.22e-39 149
MS.gene07299.t1 AT3G46600 26.750 400 243 14 105 485 3 371 5.88e-35 134
MS.gene07299.t1 AT2G29065 26.703 367 239 9 136 484 273 627 6.97e-35 138
MS.gene07299.t1 AT5G59450 27.250 400 246 14 108 485 222 598 1.07e-34 137
MS.gene07299.t1 AT3G46600 26.799 403 245 14 102 485 176 547 1.32e-34 136
MS.gene07299.t1 AT3G46600 26.799 403 245 14 102 485 208 579 2.36e-34 136
MS.gene07299.t1 AT1G63100 24.935 385 258 10 121 484 279 653 3.22e-30 124
MS.gene07299.t1 AT1G63100 24.935 385 258 10 121 484 254 628 3.95e-30 124
MS.gene07299.t1 AT3G54220 27.273 374 243 13 118 484 298 649 2.50e-29 122
MS.gene07299.t1 AT1G07530 24.505 404 262 11 101 484 384 764 8.21e-29 120
MS.gene07299.t1 AT4G17230 25.000 396 262 12 105 485 150 525 5.50e-28 117
MS.gene07299.t1 AT4G17230 25.000 396 262 12 105 485 150 525 5.50e-28 117
MS.gene07299.t1 AT5G41920 26.221 389 266 12 100 485 30 400 6.88e-28 115
MS.gene07299.t1 AT1G50420 24.889 450 252 15 104 485 48 479 4.90e-27 114
MS.gene07299.t1 AT2G29060 25.990 404 242 14 109 484 280 654 8.33e-27 114
MS.gene07299.t1 AT2G29060 25.990 404 242 14 109 484 317 691 1.04e-26 114
MS.gene07299.t1 AT1G07520 24.100 361 237 9 145 484 184 528 3.17e-26 112
MS.gene07299.t1 AT1G07520 24.100 361 237 9 145 484 184 528 3.17e-26 112
MS.gene07299.t1 AT1G07520 24.586 362 234 10 145 484 349 693 3.34e-26 112
MS.gene07299.t1 AT1G07520 24.586 362 234 10 145 484 348 692 3.72e-26 112
MS.gene07299.t1 AT1G50600 25.496 353 234 11 146 485 190 526 2.33e-24 106
MS.gene07299.t1 AT1G50600 25.496 353 234 11 146 485 265 601 4.18e-24 106
MS.gene07299.t1 AT1G50600 25.496 353 234 11 146 485 261 597 4.28e-24 106
MS.gene07299.t1 AT1G55580 25.668 374 241 11 146 485 75 445 1.94e-23 103
MS.gene07299.t1 AT2G37650 24.679 389 265 9 108 485 342 713 4.53e-23 103
MS.gene07299.t1 AT2G37650 24.679 389 265 9 108 485 330 701 4.58e-23 103
MS.gene07299.t1 AT2G04890 24.251 367 249 11 130 485 65 413 1.25e-22 100
MS.gene07299.t1 AT5G48150 23.499 383 265 10 118 485 121 490 7.14e-22 99.0
MS.gene07299.t1 AT5G48150 23.499 383 265 10 118 485 121 490 7.14e-22 99.0
MS.gene07299.t1 AT5G48150 23.499 383 265 10 118 485 121 490 7.14e-22 99.0
MS.gene07299.t1 AT5G48150 23.499 383 265 10 118 485 121 490 7.14e-22 99.0
MS.gene07299.t1 AT4G37650 22.821 390 276 8 114 485 147 529 7.71e-21 95.9
MS.gene07299.t1 AT5G66770 22.380 353 245 10 145 485 249 584 1.57e-17 85.9
MS.gene07299.t1 AT3G50650 22.526 293 213 7 206 485 251 542 3.18e-15 78.6
MS.gene07299.t1 AT3G49950 24.749 299 199 8 206 484 115 407 1.51e-14 75.9
MS.gene07299.t1 AT4G08250 24.519 416 275 17 87 484 82 476 2.76e-14 75.5
MS.gene07299.t1 AT4G36710 22.946 353 237 15 146 486 157 486 1.57e-11 67.0
MS.gene07299.t1 AT1G21450 23.183 289 197 9 213 485 314 593 2.32e-11 66.6

Find 68 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGTAAGTGTTTAATAAT+TGG 0.167586 1.2:+65403012 MS.gene07299:CDS
CATTTGATTCATCTTAATAT+TGG 0.236657 1.2:+65402307 MS.gene07299:CDS
GACGGAATTGATTGATAAAA+TGG 0.247556 1.2:+65402171 MS.gene07299:CDS
AATAATCTTTACATTCCTTA+TGG 0.249550 1.2:+65401875 MS.gene07299:CDS
CATGCCACAGTGATGAGTTT+TGG 0.263501 1.2:-65401850 None:intergenic
ATTCCTTATGGAACTGTTCT+TGG 0.265945 1.2:+65401887 MS.gene07299:CDS
TCGCAAACAAGGGTGAATTA+TGG 0.302490 1.2:-65402693 None:intergenic
AAGGCTAAGTTAGAAGAAAT+TGG 0.303167 1.2:+65402427 MS.gene07299:CDS
ATGAATGAAAGTGGAAATAT+TGG 0.333082 1.2:+65402034 MS.gene07299:CDS
TCCATGTTCACTTAGGACTA+TGG 0.336208 1.2:+65402582 MS.gene07299:CDS
GATAAGAAACATTGTTGGTT+TGG 0.346018 1.2:+65402828 MS.gene07299:CDS
ATTCTGAAGATCACAGCTAT+TGG 0.354564 1.2:+65402394 MS.gene07299:CDS
AATCAAGTAATGCAATTTGC+TGG 0.354696 1.2:+65402241 MS.gene07299:CDS
TTATGAGTGTAGAGTGATAA+TGG 0.355610 1.2:+65402786 MS.gene07299:CDS
GAAGATATAATAACACTTGC+AGG 0.358002 1.2:+65401815 MS.gene07299:CDS
ATTCACCCTTGTTTGCGAAT+AGG 0.360715 1.2:+65402698 MS.gene07299:CDS
CTTGAAGTGCTTGAGAGAAA+TGG 0.363368 1.2:-65402081 None:intergenic
CAAGCTGAGACTGAATGAAT+TGG 0.383878 1.2:-65403048 None:intergenic
AGGTATAGAATGGTAGAAAC+TGG 0.390006 1.2:+65402910 MS.gene07299:CDS
GGAATGTGAAGATTGATGTT+TGG 0.392726 1.2:+65402872 MS.gene07299:CDS
TCAAGTACTATCATAATAAA+CGG 0.431397 1.2:-65402658 None:intergenic
CGGACGAGGAAAGATGAAAC+TGG 0.435732 1.2:+65402123 MS.gene07299:CDS
TTTCATCTCATGAATGAAAG+TGG 0.437460 1.2:+65402025 MS.gene07299:CDS
CAGTTTCATCTTTCCTCGTC+CGG 0.439195 1.2:-65402122 None:intergenic
GAGAGAATCAACAGAGAAAC+CGG 0.442776 1.2:+65402103 MS.gene07299:CDS
CAATATTAAGATGAATCAAA+TGG 0.442889 1.2:-65402306 None:intergenic
AATTGCATTACTTGATTGAA+AGG 0.446453 1.2:-65402235 None:intergenic
ATTCATCTTAATATTGGATG+TGG 0.448243 1.2:+65402313 MS.gene07299:CDS
TTTATTCTCCATGTTCACTT+AGG 0.457172 1.2:+65402575 MS.gene07299:CDS
TGTTGATACTTGTATAAAAG+AGG 0.464976 1.2:+65402762 MS.gene07299:CDS
GGTATCAAATTCTGATGGCT+TGG 0.468081 1.2:+65402603 MS.gene07299:CDS
GTGATCTTCAGAATTTCAAC+CGG 0.468897 1.2:-65402385 None:intergenic
ATCAATTCCACGGCTTAAGC+AGG 0.469908 1.2:+65401667 MS.gene07299:CDS
TGCTGGTGTACAAGCTATAG+TGG 0.474092 1.2:+65402258 MS.gene07299:CDS
GAAGGGATAAGAAACATTGT+TGG 0.474796 1.2:+65402823 MS.gene07299:CDS
TGTTCTTGGAAGCTTGTTGT+CGG 0.475836 1.2:+65401901 MS.gene07299:CDS
GTTCTTTGCAAGGTATAGAA+TGG 0.484270 1.2:+65402900 MS.gene07299:CDS
AAGATGAAGAAAGGAAGGTT+AGG 0.502253 1.2:+65402851 MS.gene07299:CDS
TGTTTAATAATTGGATGGAA+GGG 0.503361 1.2:+65403021 MS.gene07299:CDS
CAATTCATTCAGTCTCAGCT+TGG 0.509421 1.2:+65403049 MS.gene07299:CDS
TTGGTTTGGAAGATGAAGAA+AGG 0.515913 1.2:+65402842 MS.gene07299:CDS
GTGTTTAATAATTGGATGGA+AGG 0.523650 1.2:+65403020 MS.gene07299:CDS
GTTTAATAATTGGATGGAAG+GGG 0.527241 1.2:+65403022 MS.gene07299:CDS
TTTGGAAGATGAAGAAAGGA+AGG 0.529462 1.2:+65402846 MS.gene07299:CDS
CTTCCAAGAACAGTTCCATA+AGG 0.531300 1.2:-65401890 None:intergenic
AACAAACCTATTCGCAAACA+AGG 0.532041 1.2:-65402704 None:intergenic
GTAAGTGTTTAATAATTGGA+TGG 0.532866 1.2:+65403016 MS.gene07299:CDS
AAGCCGTGGAATTGATATCA+TGG 0.533713 1.2:-65401660 None:intergenic
TCAAGTGATGCTAAAGAAGA+TGG 0.542006 1.2:-65401704 None:intergenic
TTTGGAGAAGGTTCTTTGCA+AGG 0.543910 1.2:+65402890 MS.gene07299:CDS
ATGGAAGCAATATTATCTGA+AGG 0.550756 1.2:+65402805 MS.gene07299:CDS
AGTAGACCGCAAGGAAAAGC+CGG 0.553680 1.2:+65402366 MS.gene07299:CDS
CTAGCAGCAGCTGAGAGAGT+AGG 0.586422 1.2:+65401962 MS.gene07299:CDS
ACCATAGTCCTAAGTGAACA+TGG 0.589256 1.2:-65402583 None:intergenic
TGGAAGCAATATTATCTGAA+GGG 0.593391 1.2:+65402806 MS.gene07299:CDS
TGAAGATTGATGTTTGGAGA+AGG 0.596614 1.2:+65402878 MS.gene07299:CDS
TGGCTTGGAGAATTTGATGA+AGG 0.603211 1.2:+65402618 MS.gene07299:CDS
ACTATGGTATCAAATTCTGA+TGG 0.608580 1.2:+65402598 MS.gene07299:CDS
AAATGAGAGAAACAAGGAGA+CGG 0.612044 1.2:+65402153 MS.gene07299:CDS
ATCAACAGAGAAACCGGACG+AGG 0.613864 1.2:+65402109 MS.gene07299:CDS
AAGCCATGATATCAATTCCA+CGG 0.616214 1.2:+65401657 MS.gene07299:CDS
ATTTGCACCTGCTTAAGCCG+TGG 0.626082 1.2:-65401674 None:intergenic
GCAAGCATTAGTAGACCGCA+AGG 0.627501 1.2:+65402357 MS.gene07299:CDS
ACAAACCTATTCGCAAACAA+GGG 0.673185 1.2:-65402703 None:intergenic
TAGATCAAATGAGAGAAACA+AGG 0.680410 1.2:+65402147 MS.gene07299:CDS
GATGCTAAAGAAGATGGTGG+TGG 0.682167 1.2:-65401698 None:intergenic
AGTGATGCTAAAGAAGATGG+TGG 0.725977 1.2:-65401701 None:intergenic
ATATCCAAAACTCATCACTG+TGG 0.776374 1.2:+65401846 MS.gene07299:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACTATGTTATATAAAA+AGG - chr1.2:65402491-65402510 None:intergenic 10.0%
!! AAAACTATGTTATATAAAAA+GGG - chr1.2:65402490-65402509 None:intergenic 10.0%
!! AATAATCTTTACATTCCTTA+TGG + chr1.2:65401875-65401894 MS.gene07299:CDS 20.0%
!! AATGGTAAGTGTTTAATAAT+TGG + chr1.2:65403012-65403031 MS.gene07299:CDS 20.0%
!! CAATATTAAGATGAATCAAA+TGG - chr1.2:65402309-65402328 None:intergenic 20.0%
!! CATTTGATTCATCTTAATAT+TGG + chr1.2:65402307-65402326 MS.gene07299:CDS 20.0%
!! TCAAGTACTATCATAATAAA+CGG - chr1.2:65402661-65402680 None:intergenic 20.0%
!!! TTTTGTACTATAGACAAAAA+TGG + chr1.2:65402994-65403013 MS.gene07299:CDS 20.0%
! AATTGCATTACTTGATTGAA+AGG - chr1.2:65402238-65402257 None:intergenic 25.0%
! ATGAATGAAAGTGGAAATAT+TGG + chr1.2:65402034-65402053 MS.gene07299:CDS 25.0%
! ATTCATCTTAATATTGGATG+TGG + chr1.2:65402313-65402332 MS.gene07299:CDS 25.0%
! CTTGAGCTATTGAAAAATTA+TGG + chr1.2:65401722-65401741 MS.gene07299:CDS 25.0%
! GTAAGTGTTTAATAATTGGA+TGG + chr1.2:65403016-65403035 MS.gene07299:CDS 25.0%
! TGTTGATACTTGTATAAAAG+AGG + chr1.2:65402762-65402781 MS.gene07299:CDS 25.0%
! TGTTTAATAATTGGATGGAA+GGG + chr1.2:65403021-65403040 MS.gene07299:CDS 25.0%
! TTACTAAAAAGTTTGACTGT+GGG + chr1.2:65402968-65402987 MS.gene07299:CDS 25.0%
!! ATATAAAAAGGGTATGTTCA+AGG - chr1.2:65402479-65402498 None:intergenic 25.0%
AAGGCTAAGTTAGAAGAAAT+TGG + chr1.2:65402427-65402446 MS.gene07299:CDS 30.0%
AATCAAGTAATGCAATTTGC+TGG + chr1.2:65402241-65402260 MS.gene07299:CDS 30.0%
ACTATGGTATCAAATTCTGA+TGG + chr1.2:65402598-65402617 MS.gene07299:CDS 30.0%
ATGGAAGCAATATTATCTGA+AGG + chr1.2:65402805-65402824 MS.gene07299:CDS 30.0%
GAAGATATAATAACACTTGC+AGG + chr1.2:65401815-65401834 MS.gene07299:CDS 30.0%
GACGGAATTGATTGATAAAA+TGG + chr1.2:65402171-65402190 MS.gene07299:CDS 30.0%
GTGTTTAATAATTGGATGGA+AGG + chr1.2:65403020-65403039 MS.gene07299:CDS 30.0%
GTTACTAAAAAGTTTGACTG+TGG + chr1.2:65402967-65402986 MS.gene07299:CDS 30.0%
GTTTAATAATTGGATGGAAG+GGG + chr1.2:65403022-65403041 MS.gene07299:CDS 30.0%
TAGATCAAATGAGAGAAACA+AGG + chr1.2:65402147-65402166 MS.gene07299:CDS 30.0%
TGGAAGCAATATTATCTGAA+GGG + chr1.2:65402806-65402825 MS.gene07299:CDS 30.0%
TTATGAGTGTAGAGTGATAA+TGG + chr1.2:65402786-65402805 MS.gene07299:CDS 30.0%
TTTATTCTCCATGTTCACTT+AGG + chr1.2:65402575-65402594 MS.gene07299:CDS 30.0%
TTTCATCTCATGAATGAAAG+TGG + chr1.2:65402025-65402044 MS.gene07299:CDS 30.0%
! AGCTATTGGATTTTCTAACA+AGG + chr1.2:65402408-65402427 MS.gene07299:CDS 30.0%
! AGTTTTTGTTGAAGATGCTA+TGG + chr1.2:65402504-65402523 MS.gene07299:CDS 30.0%
! GATAAGAAACATTGTTGGTT+TGG + chr1.2:65402828-65402847 MS.gene07299:CDS 30.0%
AAATGAGAGAAACAAGGAGA+CGG + chr1.2:65402153-65402172 MS.gene07299:CDS 35.0%
AACAAACCTATTCGCAAACA+AGG - chr1.2:65402707-65402726 None:intergenic 35.0%
AAGATGAAGAAAGGAAGGTT+AGG + chr1.2:65402851-65402870 MS.gene07299:CDS 35.0%
AAGCCATGATATCAATTCCA+CGG + chr1.2:65401657-65401676 MS.gene07299:CDS 35.0%
ACAAACCTATTCGCAAACAA+GGG - chr1.2:65402706-65402725 None:intergenic 35.0%
AGGTATAGAATGGTAGAAAC+TGG + chr1.2:65402910-65402929 MS.gene07299:CDS 35.0%
ATATCCAAAACTCATCACTG+TGG + chr1.2:65401846-65401865 MS.gene07299:CDS 35.0%
ATTCCTTATGGAACTGTTCT+TGG + chr1.2:65401887-65401906 MS.gene07299:CDS 35.0%
GAAGGGATAAGAAACATTGT+TGG + chr1.2:65402823-65402842 MS.gene07299:CDS 35.0%
GGAATGTGAAGATTGATGTT+TGG + chr1.2:65402872-65402891 MS.gene07299:CDS 35.0%
GTGATCTTCAGAATTTCAAC+CGG - chr1.2:65402388-65402407 None:intergenic 35.0%
GTTCTTTGCAAGGTATAGAA+TGG + chr1.2:65402900-65402919 MS.gene07299:CDS 35.0%
TCAAGTGATGCTAAAGAAGA+TGG - chr1.2:65401707-65401726 None:intergenic 35.0%
TGAAGATTGATGTTTGGAGA+AGG + chr1.2:65402878-65402897 MS.gene07299:CDS 35.0%
TTTGGAAGATGAAGAAAGGA+AGG + chr1.2:65402846-65402865 MS.gene07299:CDS 35.0%
! ATTCTGAAGATCACAGCTAT+TGG + chr1.2:65402394-65402413 MS.gene07299:CDS 35.0%
! TCTTCAGTTGACAACTTTTG+TGG - chr1.2:65401800-65401819 None:intergenic 35.0%
!! TTGGTTTGGAAGATGAAGAA+AGG + chr1.2:65402842-65402861 MS.gene07299:CDS 35.0%
AAGCCGTGGAATTGATATCA+TGG - chr1.2:65401663-65401682 None:intergenic 40.0%
ACCATAGTCCTAAGTGAACA+TGG - chr1.2:65402586-65402605 None:intergenic 40.0%
AGTGATGCTAAAGAAGATGG+TGG - chr1.2:65401704-65401723 None:intergenic 40.0%
CAAGCTGAGACTGAATGAAT+TGG - chr1.2:65403051-65403070 None:intergenic 40.0%
CAATTCATTCAGTCTCAGCT+TGG + chr1.2:65403049-65403068 MS.gene07299:CDS 40.0%
CTTCCAAGAACAGTTCCATA+AGG - chr1.2:65401893-65401912 None:intergenic 40.0%
GAGAGAATCAACAGAGAAAC+CGG + chr1.2:65402103-65402122 MS.gene07299:CDS 40.0%
GGTATCAAATTCTGATGGCT+TGG + chr1.2:65402603-65402622 MS.gene07299:CDS 40.0%
TCCATGTTCACTTAGGACTA+TGG + chr1.2:65402582-65402601 MS.gene07299:CDS 40.0%
TCGCAAACAAGGGTGAATTA+TGG - chr1.2:65402696-65402715 None:intergenic 40.0%
TTTGGAGAAGGTTCTTTGCA+AGG + chr1.2:65402890-65402909 MS.gene07299:CDS 40.0%
! ATTCACCCTTGTTTGCGAAT+AGG + chr1.2:65402698-65402717 MS.gene07299:CDS 40.0%
! CTTGAAGTGCTTGAGAGAAA+TGG - chr1.2:65402084-65402103 None:intergenic 40.0%
! TGGCTTGGAGAATTTGATGA+AGG + chr1.2:65402618-65402637 MS.gene07299:CDS 40.0%
!! TGTTCTTGGAAGCTTGTTGT+CGG + chr1.2:65401901-65401920 MS.gene07299:CDS 40.0%
ATCAATTCCACGGCTTAAGC+AGG + chr1.2:65401667-65401686 MS.gene07299:CDS 45.0%
CAGTTTCATCTTTCCTCGTC+CGG - chr1.2:65402125-65402144 None:intergenic 45.0%
TGCTGGTGTACAAGCTATAG+TGG + chr1.2:65402258-65402277 MS.gene07299:CDS 45.0%
! CATGCCACAGTGATGAGTTT+TGG - chr1.2:65401853-65401872 None:intergenic 45.0%
! GATGCTAAAGAAGATGGTGG+TGG - chr1.2:65401701-65401720 None:intergenic 45.0%
!! TTTCAACCGGCTTTTCCTTG+CGG - chr1.2:65402375-65402394 None:intergenic 45.0%
AGTAGACCGCAAGGAAAAGC+CGG + chr1.2:65402366-65402385 MS.gene07299:CDS 50.0%
ATCAACAGAGAAACCGGACG+AGG + chr1.2:65402109-65402128 MS.gene07299:CDS 50.0%
ATTTGCACCTGCTTAAGCCG+TGG - chr1.2:65401677-65401696 None:intergenic 50.0%
CGGACGAGGAAAGATGAAAC+TGG + chr1.2:65402123-65402142 MS.gene07299:CDS 50.0%
GCAAGCATTAGTAGACCGCA+AGG + chr1.2:65402357-65402376 MS.gene07299:CDS 50.0%
CTAGCAGCAGCTGAGAGAGT+AGG + chr1.2:65401962-65401981 MS.gene07299:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 65401620 65403083 65401620 ID=MS.gene07299
chr1.2 mRNA 65401620 65403083 65401620 ID=MS.gene07299.t1;Parent=MS.gene07299
chr1.2 exon 65401620 65403083 65401620 ID=MS.gene07299.t1.exon1;Parent=MS.gene07299.t1
chr1.2 CDS 65401620 65403083 65401620 ID=cds.MS.gene07299.t1;Parent=MS.gene07299.t1
Gene Sequence

>MS.gene07299

ATGGAGAAGTTACTACAAGATCTAGAGCAAGAAAATCAAGCCATGATATCAATTCCACGGCTTAAGCAGGTGCAAATGCCACCACCATCTTCTTTAGCATCACTTGAGCTATTGAAAAATTATGGAAGCAAGTTCAATAAGCAAAAAAGCAAAAGCAATGTTGAAACTTGTGTAAGTCCACAAAAGTTGTCAACTGAAGATATAATAACACTTGCAGGAACGAAGTATATCCAAAACTCATCACTGTGGCATGATAATAATCTTTACATTCCTTATGGAACTGTTCTTGGAAGCTTGTTGTCGGACGAAGAAAATAAACAAGTTGAACTAGCTCAGTTTGTTCTAGCAGCAGCTGAGAGAGTAGGTTGTCAACAATTTGAACGTGCAAACATGTTACTTTCACATTTTCATCTCATGAATGAAAGTGGAAATATTGGAAGCACAGTTCAGAGACTTCTTTTCCATTTCTCTCAAGCACTTCAAGAGAGAATCAACAGAGAAACCGGACGAGGAAAGATGAAACTGGATAGATCAAATGAGAGAAACAAGGAGACGGAATTGATTGATAAAATGGAATTAGATACTAACATAGTAGTTAAATGTCATCAAAAAATTCCTTTCAATCAAGTAATGCAATTTGCTGGTGTACAAGCTATAGTGGAACATGTTGCATCACAAACAAAAATCCATTTGATTCATCTTAATATTGGATGTGGAGTGATGAGTACATGTTTCATGCAAGCATTAGTAGACCGCAAGGAAAAGCCGGTTGAAATTCTGAAGATCACAGCTATTGGATTTTCTAACAAGGCTAAGTTAGAAGAAATTGGCAAAAGTTTAATGAGTTTTGCTGAATCCTTGAACATACCCTTTTTATATAACATAGTTTTTGTTGAAGATGCTATGGAGATTAAGTTAGATCAATTTGAAATTGAATATGATGAAGCTGTTGCTATTTATTCTCCATGTTCACTTAGGACTATGGTATCAAATTCTGATGGCTTGGAGAATTTGATGAAGGTGATAAGAAAAATGAAACCGTTTATTATGATAGTACTTGAACTTGAAGCAAACCATAATTCACCCTTGTTTGCGAATAGGTTTGTTGAAGCATTGTTCTTTTACTCAGCATTTTTTGACTGTGTTGATACTTGTATAAAAGAGGATTATGAGTGTAGAGTGATAATGGAAGCAATATTATCTGAAGGGATAAGAAACATTGTTGGTTTGGAAGATGAAGAAAGGAAGGTTAGGAATGTGAAGATTGATGTTTGGAGAAGGTTCTTTGCAAGGTATAGAATGGTAGAAACTGGATTCAGTGAGTCTTCAATTTATCAAGCTAATTTAGTTACTAAAAAGTTTGACTGTGGGAAGTTTTGTACTATAGACAAAAATGGTAAGTGTTTAATAATTGGATGGAAGGGGACTCCAATTCATTCAGTCTCAGCTTGGAAGTTTCTTTGA
Protein sequence

>MS.gene07299.t1

MEKLLQDLEQENQAMISIPRLKQVQMPPPSSLASLELLKNYGSKFNKQKSKSNVETCVSPQKLSTEDIITLAGTKYIQNSSLWHDNNLYIPYGTVLGSLLSDEENKQVELAQFVLAAAERVGCQQFERANMLLSHFHLMNESGNIGSTVQRLLFHFSQALQERINRETGRGKMKLDRSNERNKETELIDKMELDTNIVVKCHQKIPFNQVMQFAGVQAIVEHVASQTKIHLIHLNIGCGVMSTCFMQALVDRKEKPVEILKITAIGFSNKAKLEEIGKSLMSFAESLNIPFLYNIVFVEDAMEIKLDQFEIEYDEAVAIYSPCSLRTMVSNSDGLENLMKVIRKMKPFIMIVLELEANHNSPLFANRFVEALFFYSAFFDCVDTCIKEDYECRVIMEAILSEGIRNIVGLEDEERKVRNVKIDVWRRFFARYRMVETGFSESSIYQANLVTKKFDCGKFCTIDKNGKCLIIGWKGTPIHSVSAWKFL