AlfalfaGEDB | MS.gene073017

M. sativa cultivar XinJiangDaYe / MS.gene073017

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18 PF10533.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073017.t1	XP_003603547.1	77.5	453	48	4	1	451	1	401	1.20E-113	420.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073017.t1	Q9SJA8	38.9	434	118	10	1	419	1	302	2.5e-48	194.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073017.t1	G7J2S9	77.5	453	48	4	1	451	1	401	8.5e-114	420.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene073017.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073017.t1	MTR_3g108960	82.040	451	31	4	1	451	1	401	0.0	666
MS.gene073017.t1	MTR_1g009613	61.635	159	51	5	279	432	178	331	1.03e-56	191
MS.gene073017.t1	MTR_1g009613	43.192	213	84	9	1	179	1	210	4.33e-29	117
MS.gene073017.t1	MTR_4g127040	62.143	140	43	4	281	419	174	304	1.00e-51	177
MS.gene073017.t1	MTR_4g127040	33.178	214	89	8	1	179	1	195	3.99e-13	70.5
MS.gene073017.t1	MTR_0117s0040	92.593	81	5	1	339	419	53	132	7.46e-47	162
MS.gene073017.t1	MTR_4g094908	58.871	124	49	1	296	417	200	323	5.34e-42	152
MS.gene073017.t1	MTR_5g016610	59.483	116	46	1	303	417	141	256	6.14e-40	144
MS.gene073017.t1	MTR_1g070455	62.500	80	30	0	338	417	271	350	3.18e-31	123
MS.gene073017.t1	MTR_0229s0060	43.192	213	84	9	1	179	1	210	1.78e-29	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073017.t1	AT4G31550	63.690	168	52	4	272	434	152	315	3.20e-63	207
MS.gene073017.t1	AT4G31550	39.512	205	82	6	1	179	1	189	4.20e-30	119
MS.gene073017.t1	AT4G31550	63.314	169	52	5	272	434	152	316	1.84e-61	203
MS.gene073017.t1	AT4G31550	39.512	205	82	6	1	179	1	189	3.95e-30	119
MS.gene073017.t1	AT2G24570	58.084	167	57	6	278	436	154	315	5.01e-53	181
MS.gene073017.t1	AT2G24570	37.705	244	118	11	1	219	1	235	2.11e-23	100
MS.gene073017.t1	AT4G24240	51.923	156	58	5	267	417	195	338	2.26e-42	153
MS.gene073017.t1	AT4G31550	64.912	114	35	3	272	380	152	265	8.53e-38	139
MS.gene073017.t1	AT4G31550	39.512	205	82	6	1	179	1	189	2.05e-30	119
MS.gene073017.t1	AT2G30590	58.879	107	41	2	321	424	271	377	5.81e-37	139

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Find 165 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGTCACAATCACTC+CGG	0.649448	3.4:-94341552	MS.gene073017:CDS
AAAATTGTCCAGCTAGGAAA+AGG	0.409042	3.4:-94340968	MS.gene073017:CDS
AAAGATGAGTAAGATGTAAG+AGG	0.475709	3.4:+94341693	None:intergenic
AAAGGTTGGTTATGGCTCTT+AGG	0.300408	3.4:+94342173	None:intergenic
AAATTGTCCAGCTAGGAAAA+GGG	0.578813	3.4:-94340967	MS.gene073017:CDS
AACACTGCCGTCGCCGGTGA+TGG	0.454613	3.4:+94342046	None:intergenic
AACGCTTCTATCGCCGGTGA+TGG	0.481498	3.4:+94341659	None:intergenic
AAGAAAGAGGCTGTTTACCA+CGG	0.623906	3.4:+94341835	None:intergenic
AAGTGAGTTTAAGCCTTGTG+TGG	0.663342	3.4:+94342424	None:intergenic
AATAATTCTGGTTCAGGTTC+AGG	0.270724	3.4:-94340849	MS.gene073017:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATGAGTAAGATGTAAG+AGG	+	chr3.4:94341598-94341617	None:intergenic	30.0%
AGAATTATTCTCTTGCATTG+GGG	+	chr3.4:94342428-94342447	None:intergenic	30.0%
CAGAATTATTCTCTTGCATT+GGG	+	chr3.4:94342429-94342448	None:intergenic	30.0%
GAAAACTAAATGTTTCCTTG+GGG	+	chr3.4:94341204-94341223	None:intergenic	30.0%
GGAAAACTAAATGTTTCCTT+GGG	+	chr3.4:94341205-94341224	None:intergenic	30.0%
TAAAATCGAGAGTTAAAGGT+TGG	+	chr3.4:94341132-94341151	None:intergenic	30.0%
TGGAAAACTAAATGTTTCCT+TGG	+	chr3.4:94341206-94341225	None:intergenic	30.0%
AAAATTGTCCAGCTAGGAAA+AGG	-	chr3.4:94342320-94342339	MS.gene073017:CDS	35.0%
AAATCAATCATCAGTCACCT+TGG	+	chr3.4:94342194-94342213	None:intergenic	35.0%
AAATTGTCCAGCTAGGAAAA+GGG	-	chr3.4:94342321-94342340	MS.gene073017:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	94340797	94342513	94340797	ID=MS.gene073017
chr3.4	mRNA	94340797	94342513	94340797	ID=MS.gene073017.t1;Parent=MS.gene073017
chr3.4	exon	94341501	94342513	94341501	ID=MS.gene073017.t1.exon1;Parent=MS.gene073017.t1
chr3.4	CDS	94341501	94342513	94341501	ID=cds.MS.gene073017.t1;Parent=MS.gene073017.t1
chr3.4	exon	94341115	94341240	94341115	ID=MS.gene073017.t1.exon2;Parent=MS.gene073017.t1
chr3.4	CDS	94341115	94341240	94341115	ID=cds.MS.gene073017.t1;Parent=MS.gene073017.t1
chr3.4	exon	94340797	94341016	94340797	ID=MS.gene073017.t1.exon3;Parent=MS.gene073017.t1
chr3.4	CDS	94340797	94341016	94340797	ID=cds.MS.gene073017.t1;Parent=MS.gene073017.t1

Gene Sequence

>MS.gene073017

ATGACTTTGAGATTGATGGATTTTCCAAACATGGATGAGGAAAAAGAAAAGGCAATATTAGAAACTGCCACACAAGGCTTAAACTCACTTGCCAACTTCGCTAATAATGTCTCTCCCCAACCCTCTCTTCAAAACACTGAACTCACCAACATCACTGTTTCAGACCTCAAGAAACTATCCAACTTACTCCACCGTAAAGGCCACGCTCGCTTCCGCCGCAATCCAAATGCAACCCCTGATCAACCGCTGCCACAAACTTCCACTCCCTCCACCTCTACTCAGCCACCTCCACCACCACCACTTCAAATTCAAATTCCTCCTAAGAGCCATAACCAACCTTTAACTCTCGATTTTACTAAACCTTACACCTTTAAATCTAACCCTAAATCCTTAGATCTAGAAATCCCCAAGGAAACATTTAGTTTTCCATCACTCCTATCCTCCGCCATCACCGGCGACGGCAGTGTTTCCAATGGCAGACTTGGTCCATCTCAAATTCTCACCCCTGCTGTCTCCAGCGGTAAACCACCTCTTTCACCTAACTCATCATTCATGTCATCTGCCTTTGCTCGCGATATCACCGGCGACGGCAGTGTCTCCAATGGCAGGCTAGGTCCATGTCCAATGCCATCTACCACCCCCACCCCCGCTGTCTCCCGTGGTAAACAGCCTCTTTCTTCTATCTCACCATTCATGTCCTCCCCCATCACCGGCCATTACACCGGCGAAGCCAGTGTTTCCAATGGCAGACTAGTACCATCTCCACTCCTCACCCCTTCTATCTCCCGTGGTAAACAGCCTCTTACATCTTACTCATCTTTCATGTCCTCCGCCATCACCGGCGATAGAAGCGTTTCCAGCGGCAGGATCGGTCCATCTTATACCCTCACCCCTGCTGTCTCTGGTGGTAAACCGCCTCTTTCATCGCCGTCATTGAAGAAAAGCTGTCACAATCACTCCGGCGATGTCTCTGGGAAAACCTCCGCATCTAAGAAATGCCACTGCCAGAAAAGGTAAAATTAATTTACGAGAATCATTTGTTAATAGTCAACATTCAATGGTCACGGCACGCGTGAAAACGACAACATGAGTTTCTTTGTTATGTTTCGCGTTTGTCGTAAAAAAGACAAGGAAAACAAATGTCACAAACAGAATCTTGACCCCGCATATTTTATTTGTCATTTAGTCATTATTCTTTGCTTTTGACTGCTGTCTGACTTGTGCATGTTAGCAACAATGACATATTATAACGTTTTGATTTTATTTTTTTTAGGAAAAATCGGAACAGGAGACAAGTGAGAGTCCCGTGCATAAGTTCAAGGATTGCTGATATACCAGCAGATGAGTATTCATGGAGGAAGTATGGCTCCAAACCGATTAAGGGAACACCACATCCAAGGTGACTGATGATTGATTTATAGCCGTTGATTTATTTGAATATGGTAAAAGGAATGTTTAATAAGGTTGAATATGTTTGTTTTGTTTTGTTTATTTCAGGGGTTATTATAGGTGCACTATGTCTAAAAATTGTCCAGCTAGGAAAAGGGTGGAGAAGGCGAAAGATGATCCAAATATACTAGTTGTAACGTATGAGTTTGAGCATCGTCACCACCAGCTTCATAATCAAGCCCCAATGCAAGAGAATAATTCTGGTTCAGGTTCAGGGAGTGGGAGCATGGATTTGGGGGTGTTTGAGCTAACCTTAGGAGGGAATTAG

Protein sequence

>MS.gene073017.t1

MTLRLMDFPNMDEEKEKAILETATQGLNSLANFANNVSPQPSLQNTELTNITVSDLKKLSNLLHRKGHARFRRNPNATPDQPLPQTSTPSTSTQPPPPPPLQIQIPPKSHNQPLTLDFTKPYTFKSNPKSLDLEIPKETFSFPSLLSSAITGDGSVSNGRLGPSQILTPAVSSGKPPLSPNSSFMSSAFARDITGDGSVSNGRLGPCPMPSTTPTPAVSRGKQPLSSISPFMSSPITGHYTGEASVSNGRLVPSPLLTPSISRGKQPLTSYSSFMSSAITGDRSVSSGRIGPSYTLTPAVSGGKPPLSSPSLKKSCHNHSGDVSGKTSASKKCHCQKRKNRNRRQVRVPCISSRIADIPADEYSWRKYGSKPIKGTPHPRGYYRCTMSKNCPARKRVEKAKDDPNILVVTYEFEHRHHQLHNQAPMQENNSGSGSGSGSMDLGVFELTLGGN