Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073250.t1 | KEH25312.1 | 48.1 | 420 | 45 | 7 | 10 | 286 | 1 | 390 | 1.20E-85 | 326.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073250.t1 | Q9FWQ5 | 33.2 | 229 | 80 | 4 | 141 | 296 | 1464 | 1692 | 1.7e-27 | 124.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073250.t1 | A0A072U6L9 | 48.1 | 420 | 45 | 7 | 10 | 286 | 1 | 390 | 8.7e-86 | 326.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene073250.t1 | TR | TAZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073250.t1 | MTR_6g017130 | 60.300 | 267 | 61 | 7 | 35 | 286 | 154 | 390 | 8.23e-94 | 283 |
| MS.gene073250.t1 | MTR_6g017130 | 81.651 | 109 | 20 | 0 | 10 | 118 | 1 | 109 | 8.20e-54 | 180 |
| MS.gene073250.t1 | MTR_6g017130 | 72.222 | 90 | 24 | 1 | 30 | 118 | 84 | 173 | 5.76e-35 | 130 |
| MS.gene073250.t1 | MTR_5g085310 | 60.294 | 204 | 42 | 4 | 120 | 288 | 826 | 1025 | 1.05e-64 | 219 |
| MS.gene073250.t1 | MTR_6g017010 | 56.757 | 222 | 52 | 5 | 120 | 305 | 556 | 769 | 1.02e-63 | 214 |
| MS.gene073250.t1 | MTR_0299s0030 | 49.333 | 225 | 73 | 8 | 9 | 200 | 85 | 301 | 4.08e-48 | 164 |
| MS.gene073250.t1 | MTR_5g017020 | 46.073 | 191 | 73 | 4 | 120 | 302 | 390 | 558 | 2.40e-37 | 140 |
| MS.gene073250.t1 | MTR_1g047940 | 48.387 | 155 | 50 | 3 | 143 | 294 | 71 | 198 | 1.57e-33 | 122 |
| MS.gene073250.t1 | MTR_3g107960 | 68.966 | 87 | 27 | 0 | 216 | 302 | 1118 | 1204 | 2.10e-33 | 130 |
| MS.gene073250.t1 | MTR_3g107960 | 68.354 | 79 | 21 | 1 | 120 | 198 | 947 | 1021 | 5.96e-26 | 108 |
| MS.gene073250.t1 | MTR_3g101100 | 68.966 | 87 | 27 | 0 | 216 | 302 | 1307 | 1393 | 9.45e-33 | 128 |
| MS.gene073250.t1 | MTR_3g101100 | 89.474 | 57 | 6 | 0 | 142 | 198 | 1146 | 1202 | 1.18e-25 | 107 |
| MS.gene073250.t1 | MTR_5g017020 | 70.886 | 79 | 19 | 1 | 120 | 198 | 390 | 464 | 3.80e-26 | 108 |
| MS.gene073250.t1 | MTR_6g017000 | 59.494 | 79 | 28 | 1 | 120 | 198 | 865 | 939 | 3.71e-21 | 94.4 |
| MS.gene073250.t1 | MTR_4g005050 | 46.914 | 81 | 43 | 0 | 216 | 296 | 1615 | 1695 | 5.32e-19 | 88.2 |
| MS.gene073250.t1 | MTR_4g005050 | 53.448 | 58 | 27 | 0 | 141 | 198 | 1468 | 1525 | 4.70e-13 | 70.1 |
| MS.gene073250.t1 | MTR_6g017120 | 80.435 | 46 | 9 | 0 | 73 | 118 | 95 | 140 | 1.33e-16 | 75.9 |
| MS.gene073250.t1 | MTR_6g017120 | 44.000 | 75 | 32 | 2 | 2 | 67 | 80 | 153 | 4.62e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073250.t1 | AT1G79000 | 30.568 | 229 | 86 | 6 | 141 | 296 | 1455 | 1683 | 1.61e-22 | 98.6 |
| MS.gene073250.t1 | AT1G79000 | 30.568 | 229 | 86 | 6 | 141 | 296 | 1431 | 1659 | 1.76e-22 | 98.2 |
| MS.gene073250.t1 | AT1G79000 | 30.568 | 229 | 86 | 6 | 141 | 296 | 1455 | 1683 | 1.98e-22 | 98.2 |
| MS.gene073250.t1 | AT1G16710 | 48.718 | 78 | 40 | 0 | 219 | 296 | 1589 | 1666 | 8.06e-20 | 90.5 |
| MS.gene073250.t1 | AT1G16710 | 55.172 | 58 | 26 | 0 | 141 | 198 | 1438 | 1495 | 3.98e-14 | 73.6 |
| MS.gene073250.t1 | AT1G16710 | 48.718 | 78 | 40 | 0 | 219 | 296 | 1589 | 1666 | 8.06e-20 | 90.5 |
| MS.gene073250.t1 | AT1G16710 | 55.172 | 58 | 26 | 0 | 141 | 198 | 1438 | 1495 | 3.98e-14 | 73.6 |
| MS.gene073250.t1 | AT1G16710 | 48.718 | 78 | 40 | 0 | 219 | 296 | 1589 | 1666 | 8.06e-20 | 90.5 |
| MS.gene073250.t1 | AT1G16710 | 55.172 | 58 | 26 | 0 | 141 | 198 | 1438 | 1495 | 3.98e-14 | 73.6 |
| MS.gene073250.t1 | AT1G16710 | 48.718 | 78 | 40 | 0 | 219 | 296 | 1589 | 1666 | 8.06e-20 | 90.5 |
| MS.gene073250.t1 | AT1G16710 | 55.172 | 58 | 26 | 0 | 141 | 198 | 1438 | 1495 | 3.98e-14 | 73.6 |
| MS.gene073250.t1 | AT1G16710 | 48.718 | 78 | 40 | 0 | 219 | 296 | 1550 | 1627 | 8.34e-20 | 90.5 |
| MS.gene073250.t1 | AT1G16710 | 55.172 | 58 | 26 | 0 | 141 | 198 | 1399 | 1456 | 4.11e-14 | 73.6 |
| MS.gene073250.t1 | AT1G16710 | 48.718 | 78 | 40 | 0 | 219 | 296 | 1550 | 1627 | 8.34e-20 | 90.5 |
| MS.gene073250.t1 | AT1G16710 | 55.172 | 58 | 26 | 0 | 141 | 198 | 1399 | 1456 | 4.11e-14 | 73.6 |
| MS.gene073250.t1 | AT1G16710 | 48.718 | 78 | 40 | 0 | 219 | 296 | 1550 | 1627 | 8.34e-20 | 90.5 |
| MS.gene073250.t1 | AT1G16710 | 55.172 | 58 | 26 | 0 | 141 | 198 | 1399 | 1456 | 4.11e-14 | 73.6 |
| MS.gene073250.t1 | AT1G16710 | 48.718 | 78 | 40 | 0 | 219 | 296 | 1586 | 1663 | 8.36e-20 | 90.5 |
| MS.gene073250.t1 | AT1G16710 | 55.172 | 58 | 26 | 0 | 141 | 198 | 1435 | 1492 | 4.09e-14 | 73.6 |
| MS.gene073250.t1 | AT1G16710 | 48.718 | 78 | 40 | 0 | 219 | 296 | 1615 | 1692 | 8.70e-20 | 90.5 |
| MS.gene073250.t1 | AT1G16710 | 55.172 | 58 | 26 | 0 | 141 | 198 | 1464 | 1521 | 4.49e-14 | 73.2 |
| MS.gene073250.t1 | AT3G12980 | 51.724 | 58 | 28 | 0 | 141 | 198 | 1435 | 1492 | 1.08e-13 | 72.0 |
| MS.gene073250.t1 | AT3G12980 | 39.506 | 81 | 46 | 1 | 216 | 296 | 1578 | 1655 | 2.81e-13 | 70.9 |
| MS.gene073250.t1 | AT3G12980 | 51.724 | 58 | 28 | 0 | 141 | 198 | 1354 | 1411 | 1.12e-13 | 72.0 |
| MS.gene073250.t1 | AT3G12980 | 39.506 | 81 | 46 | 1 | 216 | 296 | 1497 | 1574 | 3.47e-13 | 70.5 |
| MS.gene073250.t1 | AT1G55970 | 50.000 | 58 | 29 | 0 | 141 | 198 | 1217 | 1274 | 5.76e-11 | 63.9 |
| MS.gene073250.t1 | AT1G55970 | 50.000 | 58 | 29 | 0 | 141 | 198 | 1231 | 1288 | 6.38e-11 | 63.9 |
Find 57 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTGGATTGTTTGAAAAT+AGG | 0.216587 | 4.3:+55239776 | MS.gene073250:CDS |
| GCTCTCCAATCTTACGGTTT+TGG | 0.244128 | 4.3:-55238420 | None:intergenic |
| AAGGAAGTTAATCCGAAAAT+TGG | 0.254613 | 4.3:+55238448 | MS.gene073250:CDS |
| GAGTGGATTGTTTGAAAATA+GGG | 0.256306 | 4.3:+55239777 | MS.gene073250:CDS |
| TCCACAATTGTAAAATGATA+TGG | 0.258955 | 4.3:+55240198 | MS.gene073250:CDS |
| TTCCGAGTCTTTGCAATTCC+TGG | 0.259668 | 4.3:-55240240 | None:intergenic |
| CATCAACAACAGCCTGAAAA+TGG | 0.309428 | 4.3:-55239714 | None:intergenic |
| AATGTAGAATACCGCGTTGC+AGG | 0.320641 | 4.3:+55240261 | MS.gene073250:CDS |
| TCGGGATTTGAAAGCGATTC+GGG | 0.330124 | 4.3:+55238591 | MS.gene073250:CDS |
| TTGTCATAGAGCTGAAGTTT+TGG | 0.349357 | 4.3:+55240463 | MS.gene073250:CDS |
| CCGAAAATTGGATACAATAC+TGG | 0.359569 | 4.3:+55238460 | MS.gene073250:CDS |
| GAATGTGTTTGTCAGAACTA+TGG | 0.367679 | 4.3:-55239583 | None:intergenic |
| CCGAAAATTAGATACAATAT+TGG | 0.391268 | 4.3:+55238652 | MS.gene073250:CDS |
| TTCTAGCACGTAGGAGTAGA+TGG | 0.392986 | 4.3:-55239885 | None:intergenic |
| AAAGTTGGGAAGACATCAAT+TGG | 0.408372 | 4.3:+55238536 | MS.gene073250:CDS |
| GTCGGGATTTGAAAGCGATT+CGG | 0.419586 | 4.3:+55238590 | MS.gene073250:CDS |
| TGGGAAGCTCTCCAATCTTA+CGG | 0.420073 | 4.3:-55238426 | None:intergenic |
| AAGTGCAAAATTCGAGTGAA+TGG | 0.447991 | 4.3:+55240170 | MS.gene073250:CDS |
| TCAGGAGTCAAACAAGGAAA+TGG | 0.466664 | 4.3:+55239974 | MS.gene073250:intron |
| CAAACTGAAACTGAGACTTC+TGG | 0.468204 | 4.3:-55239819 | None:intergenic |
| GTTCATCATGGAGGAATACT+TGG | 0.469438 | 4.3:-55239857 | None:intergenic |
| CGAGGTGCATACACTTTGTC+AGG | 0.471850 | 4.3:+55239615 | MS.gene073250:CDS |
| TGGGACATCGCATTGTTAGT+TGG | 0.474676 | 4.3:-55238400 | None:intergenic |
| ACATCAATTGGAAAGACATC+AGG | 0.481094 | 4.3:+55238548 | MS.gene073250:CDS |
| ACAATCAATCTACAGGATAA+TGG | 0.484640 | 4.3:+55238363 | MS.gene073250:intron |
| AGCGACGGAGCAGTCGTCAT+TGG | 0.485206 | 4.3:+55240488 | MS.gene073250:CDS |
| AGTGCAAAATTCGAGTGAAT+GGG | 0.490592 | 4.3:+55240171 | MS.gene073250:CDS |
| ATGTCCCAAAACCGTAAGAT+TGG | 0.496680 | 4.3:+55238415 | MS.gene073250:CDS |
| TTCTTGATTTGTGAACAGTT+TGG | 0.501758 | 4.3:-55240128 | None:intergenic |
| TTTGAAAGCGATTCGGGACA+AGG | 0.523517 | 4.3:+55238597 | MS.gene073250:CDS |
| ATCATTATGTTTAGTGTCGG+AGG | 0.527772 | 4.3:-55239743 | None:intergenic |
| CTCCAGGAATTGCAAAGACT+CGG | 0.528433 | 4.3:+55240238 | MS.gene073250:CDS |
| TTAAACTAACTACGCACTCC+AGG | 0.537234 | 4.3:+55240222 | MS.gene073250:CDS |
| CACGTAGGAGTAGATGGTAG+AGG | 0.540697 | 4.3:-55239879 | None:intergenic |
| TCATTATGTTTAGTGTCGGA+GGG | 0.558079 | 4.3:-55239742 | None:intergenic |
| GGTACGCGATGGTCAGATGA+TGG | 0.562903 | 4.3:+55238673 | MS.gene073250:CDS |
| TTTCAAACAATCCACTCTCA+AGG | 0.566291 | 4.3:-55239771 | None:intergenic |
| AAGCGATTCGGGACAAGGCA+AGG | 0.568591 | 4.3:+55238602 | MS.gene073250:CDS |
| GATATCATTATGTTTAGTGT+CGG | 0.573794 | 4.3:-55239746 | None:intergenic |
| AATGATATCGTCCTTGAGAG+TGG | 0.592327 | 4.3:+55239760 | MS.gene073250:CDS |
| CGGCGTAGCTTATCATTCAT+CGG | 0.597169 | 4.3:-55237724 | None:intergenic |
| ATCTGAAGAAGCATGTAGAA+CGG | 0.598774 | 4.3:+55240420 | MS.gene073250:CDS |
| GTGCAAAATTCGAGTGAATG+GGG | 0.599551 | 4.3:+55240172 | MS.gene073250:CDS |
| TGAATGATAAGCTACGCCGC+TGG | 0.600980 | 4.3:+55237728 | MS.gene073250:CDS |
| TGCAAAATTCGAGTGAATGG+GGG | 0.616814 | 4.3:+55240173 | MS.gene073250:CDS |
| CATTATGTTTAGTGTCGGAG+GGG | 0.617166 | 4.3:-55239741 | None:intergenic |
| TAGATGGTAGAGGTTCATCA+TGG | 0.623945 | 4.3:-55239869 | None:intergenic |
| GATACAATACTGGTAAGCGT+TGG | 0.634031 | 4.3:+55238470 | MS.gene073250:CDS |
| TGAAAACAATGTGCTCAAGT+CGG | 0.634872 | 4.3:+55238501 | MS.gene073250:CDS |
| TCGGAATCAGGAGTCAAACA+AGG | 0.641106 | 4.3:+55239968 | MS.gene073250:intron |
| GATACAATATTGGTACGCGA+TGG | 0.641120 | 4.3:+55238662 | MS.gene073250:CDS |
| TAAGATTGGAGAGCTTCCCA+AGG | 0.665492 | 4.3:+55238429 | MS.gene073250:CDS |
| TGGAGGAATACTTGGCACGA+CGG | 0.668087 | 4.3:-55239849 | None:intergenic |
| ATCAATCTACAGGATAATGG+CGG | 0.702413 | 4.3:+55238366 | MS.gene073250:intron |
| ATGGTAGAGGTTCATCATGG+AGG | 0.705017 | 4.3:-55239866 | None:intergenic |
| ATTGTAACACACCTGCAACG+CGG | 0.761234 | 4.3:-55240272 | None:intergenic |
| AACACATTCAAAGAACGACG+AGG | 0.780969 | 4.3:+55239597 | MS.gene073250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCATAATTTTGATT+AGG | + | chr4.3:55239328-55239347 | MS.gene073250:intron | 10.0% |
| !! | AAAAAAATGATCATATATGT+CGG | - | chr4.3:55237936-55237955 | None:intergenic | 15.0% |
| !! | AAAATTATATGAAAAACATC+AGG | - | chr4.3:55239653-55239672 | None:intergenic | 15.0% |
| !! | ATTATGAAAATAACATACAT+TGG | - | chr4.3:55239321-55239340 | None:intergenic | 15.0% |
| !! | TTATTAGATGAAAATAATGT+GGG | + | chr4.3:55238129-55238148 | MS.gene073250:intron | 15.0% |
| !!! | ACAACAAGAAATTTTTTTAT+TGG | - | chr4.3:55238832-55238851 | None:intergenic | 15.0% |
| !!! | TCTTTCTAATACTTTTTTTT+GGG | + | chr4.3:55238078-55238097 | MS.gene073250:intron | 15.0% |
| !! | CTTATTAGATGAAAATAATG+TGG | + | chr4.3:55238128-55238147 | MS.gene073250:intron | 20.0% |
| !! | TATGAACAAATGATAAAAGA+AGG | - | chr4.3:55237844-55237863 | None:intergenic | 20.0% |
| !! | TTCATAATATTTATTTGTGC+AGG | + | chr4.3:55237858-55237877 | MS.gene073250:intron | 20.0% |
| !! | TTCATTCAAAACATTGAATT+AGG | + | chr4.3:55239689-55239708 | MS.gene073250:intron | 20.0% |
| !!! | AGCATTGAATGAAATAAAAA+GGG | + | chr4.3:55239523-55239542 | MS.gene073250:intron | 20.0% |
| !!! | CAAAAAAAAGTATTAGAAAG+AGG | - | chr4.3:55238079-55238098 | None:intergenic | 20.0% |
| !!! | CATATAATTTTCTCATCATT+AGG | + | chr4.3:55239662-55239681 | MS.gene073250:intron | 20.0% |
| !!! | CCAATATTGTATCTAATTTT+CGG | - | chr4.3:55238655-55238674 | None:intergenic | 20.0% |
| !!! | CTCTTTCTAATACTTTTTTT+TGG | + | chr4.3:55238077-55238096 | MS.gene073250:intron | 20.0% |
| !!! | GATTCAATAAATTCTTTTCT+GGG | + | chr4.3:55238933-55238952 | MS.gene073250:intron | 20.0% |
| !!! | TAGCATTGAATGAAATAAAA+AGG | + | chr4.3:55239522-55239541 | MS.gene073250:intron | 20.0% |
| !!! | TGATTCAATAAATTCTTTTC+TGG | + | chr4.3:55238932-55238951 | MS.gene073250:intron | 20.0% |
| !!! | TTTCATAATTTTGATTAGGT+TGG | + | chr4.3:55239332-55239351 | MS.gene073250:intron | 20.0% |
| !!! | TTTTAAATCTTTCAACTCAT+TGG | + | chr4.3:55238875-55238894 | MS.gene073250:intron | 20.0% |
| ! | AGGAATGAAGAAAAATTGTT+TGG | + | chr4.3:55238568-55238587 | MS.gene073250:CDS | 25.0% |
| ! | ATATGAAAAACATCAGGTTT+AGG | - | chr4.3:55239647-55239666 | None:intergenic | 25.0% |
| ! | ATGAAGAAAAATTGTTTGGT+CGG | + | chr4.3:55238572-55238591 | MS.gene073250:CDS | 25.0% |
| ! | CCGAAAATTAGATACAATAT+TGG | + | chr4.3:55238652-55238671 | MS.gene073250:CDS | 25.0% |
| ! | GATATCATTATGTTTAGTGT+CGG | - | chr4.3:55239749-55239768 | None:intergenic | 25.0% |
| ! | GTAGAATATCAAAATTCTCT+AGG | - | chr4.3:55240313-55240332 | None:intergenic | 25.0% |
| ! | GTATCTTTCAATGCTAAAAA+AGG | + | chr4.3:55237880-55237899 | MS.gene073250:intron | 25.0% |
| ! | TCCACAATTGTAAAATGATA+TGG | + | chr4.3:55240198-55240217 | MS.gene073250:CDS | 25.0% |
| ! | TTATTGTGTGAAATCAATGT+GGG | - | chr4.3:55238191-55238210 | None:intergenic | 25.0% |
| ! | TTGGAAATACATCAATTGAA+AGG | + | chr4.3:55238732-55238751 | MS.gene073250:intron | 25.0% |
| ! | TTTAATATCTCTCTTTCCTA+TGG | + | chr4.3:55238337-55238356 | MS.gene073250:intron | 25.0% |
| ! | TTTATTGTGTGAAATCAATG+TGG | - | chr4.3:55238192-55238211 | None:intergenic | 25.0% |
| !! | ACCATATCATTTTACAATTG+TGG | - | chr4.3:55240202-55240221 | None:intergenic | 25.0% |
| !! | CTCTTGTAGGAAATATATTT+TGG | - | chr4.3:55239358-55239377 | None:intergenic | 25.0% |
| !! | TTTTTCTTCCTACTGAAAAA+GGG | + | chr4.3:55237951-55237970 | MS.gene073250:intron | 25.0% |
| !!! | TCTTCTACATCCTTTTTTAT+AGG | + | chr4.3:55239295-55239314 | MS.gene073250:intron | 25.0% |
| !!! | TTTTTTCTTCCTACTGAAAA+AGG | + | chr4.3:55237950-55237969 | MS.gene073250:intron | 25.0% |
| AAATAGAACAGTAAAGGACT+TGG | + | chr4.3:55239199-55239218 | MS.gene073250:intron | 30.0% | |
| AAGATTTAGAGAATGAGTCA+GGG | - | chr4.3:55239079-55239098 | None:intergenic | 30.0% | |
| AAGGAAGTTAATCCGAAAAT+TGG | + | chr4.3:55238448-55238467 | MS.gene073250:CDS | 30.0% | |
| AATAGAACAGTAAAGGACTT+GGG | + | chr4.3:55239200-55239219 | MS.gene073250:intron | 30.0% | |
| AATCACAATAGTGAAATGCT+AGG | - | chr4.3:55238241-55238260 | None:intergenic | 30.0% | |
| ACAATCAATCTACAGGATAA+TGG | + | chr4.3:55238363-55238382 | MS.gene073250:intron | 30.0% | |
| AGTGTCAAATAGAACAGTAA+AGG | + | chr4.3:55239193-55239212 | MS.gene073250:intron | 30.0% | |
| ATTCTCTAAATCTTCCTAAG+TGG | + | chr4.3:55239085-55239104 | MS.gene073250:intron | 30.0% | |
| TGAAGAAAAATTGTTTGGTC+GGG | + | chr4.3:55238573-55238592 | MS.gene073250:CDS | 30.0% | |
| ! | AATTTTCGGATTAACTTCCT+TGG | - | chr4.3:55238449-55238468 | None:intergenic | 30.0% |
| ! | ACATCAATTGAAAGGCATAA+GGG | + | chr4.3:55238740-55238759 | MS.gene073250:intron | 30.0% |
| ! | ACCGACGACAATATTTTATT+CGG | - | chr4.3:55237909-55237928 | None:intergenic | 30.0% |
| ! | ATTTTCGGATTAACTTCCTT+GGG | - | chr4.3:55238448-55238467 | None:intergenic | 30.0% |
| ! | CATACATTGGCCTATAAAAA+AGG | - | chr4.3:55239308-55239327 | None:intergenic | 30.0% |
| ! | CCAGTATTGTATCCAATTTT+CGG | - | chr4.3:55238463-55238482 | None:intergenic | 30.0% |
| ! | TACATCAATTGAAAGGCATA+AGG | + | chr4.3:55238739-55238758 | MS.gene073250:intron | 30.0% |
| !! | AGAGTGGATTGTTTGAAAAT+AGG | + | chr4.3:55239776-55239795 | MS.gene073250:CDS | 30.0% |
| !! | GAGTGGATTGTTTGAAAATA+GGG | + | chr4.3:55239777-55239796 | MS.gene073250:CDS | 30.0% |
| !! | GATTTGTTAAAAGAGAGTAG+AGG | + | chr4.3:55239146-55239165 | MS.gene073250:intron | 30.0% |
| !! | GGCAAGGAAACTTTTAAAAA+AGG | + | chr4.3:55238618-55238637 | MS.gene073250:CDS | 30.0% |
| !! | TTCTTGATTTGTGAACAGTT+TGG | - | chr4.3:55240131-55240150 | None:intergenic | 30.0% |
| !! | TTGAACACTTTTGAGTCAAT+TGG | - | chr4.3:55239932-55239951 | None:intergenic | 30.0% |
| AAAGTTGGGAAGACATCAAT+TGG | + | chr4.3:55238536-55238555 | MS.gene073250:CDS | 35.0% | |
| AAGTGCAAAATTCGAGTGAA+TGG | + | chr4.3:55240170-55240189 | MS.gene073250:CDS | 35.0% | |
| AATACACACAGACACATAAG+GGG | - | chr4.3:55237767-55237786 | None:intergenic | 35.0% | |
| AATGTGGGTTTGACCATTTA+AGG | + | chr4.3:55238144-55238163 | MS.gene073250:intron | 35.0% | |
| ACATCAATTGGAAAGACATC+AGG | + | chr4.3:55238548-55238567 | MS.gene073250:CDS | 35.0% | |
| AGACTCTCAAGATGAAAATG+AGG | - | chr4.3:55238973-55238992 | None:intergenic | 35.0% | |
| AGTGCAAAATTCGAGTGAAT+GGG | + | chr4.3:55240171-55240190 | MS.gene073250:CDS | 35.0% | |
| ATAGATCAAGCATAGTCTGA+TGG | - | chr4.3:55239111-55239130 | None:intergenic | 35.0% | |
| CAATACACACAGACACATAA+GGG | - | chr4.3:55237768-55237787 | None:intergenic | 35.0% | |
| CCGAAAATTGGATACAATAC+TGG | + | chr4.3:55238460-55238479 | MS.gene073250:CDS | 35.0% | |
| CCTTCTTAGATGCAAAAAGT+TGG | + | chr4.3:55238713-55238732 | MS.gene073250:intron | 35.0% | |
| GAAGATTTAGAGAATGAGTC+AGG | - | chr4.3:55239080-55239099 | None:intergenic | 35.0% | |
| GAATGTGTTTGTCAGAACTA+TGG | - | chr4.3:55239586-55239605 | None:intergenic | 35.0% | |
| GATCTATCTTCTGAACTTGT+TGG | + | chr4.3:55239124-55239143 | MS.gene073250:intron | 35.0% | |
| GCCGAATAAAATATTGTCGT+CGG | + | chr4.3:55237905-55237924 | MS.gene073250:intron | 35.0% | |
| GGCAACTGAAATATGTGAAA+TGG | - | chr4.3:55239565-55239584 | None:intergenic | 35.0% | |
| GGTCTTAGAGACAAAAAGTT+GGG | + | chr4.3:55238522-55238541 | MS.gene073250:CDS | 35.0% | |
| GTCGAAAATGAGTCCTTAAA+TGG | - | chr4.3:55238160-55238179 | None:intergenic | 35.0% | |
| GTCTGATAAGGATGATGTTA+AGG | - | chr4.3:55239057-55239076 | None:intergenic | 35.0% | |
| TCAATACACACAGACACATA+AGG | - | chr4.3:55237769-55237788 | None:intergenic | 35.0% | |
| TGAAAACAATGTGCTCAAGT+CGG | + | chr4.3:55238501-55238520 | MS.gene073250:CDS | 35.0% | |
| TGTTAAGGATGAAGCAAATG+TGG | - | chr4.3:55239042-55239061 | None:intergenic | 35.0% | |
| TTTCAAACAATCCACTCTCA+AGG | - | chr4.3:55239774-55239793 | None:intergenic | 35.0% | |
| ! | ATCAATCTACAGGATAATGG+CGG | + | chr4.3:55238366-55238385 | MS.gene073250:intron | 35.0% |
| ! | ATCATTATGTTTAGTGTCGG+AGG | - | chr4.3:55239746-55239765 | None:intergenic | 35.0% |
| ! | ATCTGAAGAAGCATGTAGAA+CGG | + | chr4.3:55240420-55240439 | MS.gene073250:CDS | 35.0% |
| ! | CCAACTTTTTGCATCTAAGA+AGG | - | chr4.3:55238716-55238735 | None:intergenic | 35.0% |
| ! | GACGACAATATTTTATTCGG+CGG | - | chr4.3:55237906-55237925 | None:intergenic | 35.0% |
| ! | TCATTATGTTTAGTGTCGGA+GGG | - | chr4.3:55239745-55239764 | None:intergenic | 35.0% |
| ! | TCATTTTCATCTTGAGAGTC+TGG | + | chr4.3:55238972-55238991 | MS.gene073250:intron | 35.0% |
| ! | TTGTCATAGAGCTGAAGTTT+TGG | + | chr4.3:55240463-55240482 | MS.gene073250:CDS | 35.0% |
| !!! | TTGAATTAGGTGCCATTTTC+AGG | + | chr4.3:55239702-55239721 | MS.gene073250:intron | 35.0% |
| AACACATTCAAAGAACGACG+AGG | + | chr4.3:55239597-55239616 | MS.gene073250:CDS | 40.0% | |
| AATGATATCGTCCTTGAGAG+TGG | + | chr4.3:55239760-55239779 | MS.gene073250:CDS | 40.0% | |
| AGTATGTCAATCTCGGAATC+AGG | + | chr4.3:55239956-55239975 | MS.gene073250:intron | 40.0% | |
| ATGAAGCAAATGTGGTTGTG+GGG | - | chr4.3:55239034-55239053 | None:intergenic | 40.0% | |
| ATGGTGCACAATCAATCTAC+AGG | + | chr4.3:55238356-55238375 | MS.gene073250:intron | 40.0% | |
| ATGTCCCAAAACCGTAAGAT+TGG | + | chr4.3:55238415-55238434 | MS.gene073250:CDS | 40.0% | |
| CAAACTGAAACTGAGACTTC+TGG | - | chr4.3:55239822-55239841 | None:intergenic | 40.0% | |
| CAACACCAGTATGTCAATCT+CGG | + | chr4.3:55239949-55239968 | MS.gene073250:intron | 40.0% | |
| CAAGTCTTCCAAAGACATTC+TGG | + | chr4.3:55239229-55239248 | MS.gene073250:intron | 40.0% | |
| CACTGAATGCGAGAAATTTC+TGG | + | chr4.3:55239457-55239476 | MS.gene073250:intron | 40.0% | |
| CATCAACAACAGCCTGAAAA+TGG | - | chr4.3:55239717-55239736 | None:intergenic | 40.0% | |
| CGGTCTTAGAGACAAAAAGT+TGG | + | chr4.3:55238521-55238540 | MS.gene073250:CDS | 40.0% | |
| CTTACTGACATACACACAGA+TGG | + | chr4.3:55240065-55240084 | MS.gene073250:intron | 40.0% | |
| GATACAATACTGGTAAGCGT+TGG | + | chr4.3:55238470-55238489 | MS.gene073250:CDS | 40.0% | |
| GATACAATATTGGTACGCGA+TGG | + | chr4.3:55238662-55238681 | MS.gene073250:CDS | 40.0% | |
| GATGAAGCAAATGTGGTTGT+GGG | - | chr4.3:55239035-55239054 | None:intergenic | 40.0% | |
| GTAGATTGATTGTGCACCAT+AGG | - | chr4.3:55238356-55238375 | None:intergenic | 40.0% | |
| GTGCAAAATTCGAGTGAATG+GGG | + | chr4.3:55240172-55240191 | MS.gene073250:CDS | 40.0% | |
| GTTCATCATGGAGGAATACT+TGG | - | chr4.3:55239860-55239879 | None:intergenic | 40.0% | |
| TACTGAAAAAGGGAACTCCA+AGG | + | chr4.3:55237961-55237980 | MS.gene073250:intron | 40.0% | |
| TAGATGGTAGAGGTTCATCA+TGG | - | chr4.3:55239872-55239891 | None:intergenic | 40.0% | |
| TCAGGAGTCAAACAAGGAAA+TGG | + | chr4.3:55239974-55239993 | MS.gene073250:intron | 40.0% | |
| TCCAAGACACAATCACTTCA+CGG | - | chr4.3:55239424-55239443 | None:intergenic | 40.0% | |
| TCTCGTTTGCCATACTTTGA+TGG | + | chr4.3:55237992-55238011 | MS.gene073250:intron | 40.0% | |
| TGATTCCGAGATTGACATAC+TGG | - | chr4.3:55239957-55239976 | None:intergenic | 40.0% | |
| TGCAAAATTCGAGTGAATGG+GGG | + | chr4.3:55240173-55240192 | MS.gene073250:CDS | 40.0% | |
| TTAAACTAACTACGCACTCC+AGG | + | chr4.3:55240222-55240241 | MS.gene073250:CDS | 40.0% | |
| TTCTGTGTTCAAAGTGTGTG+AGG | + | chr4.3:55238898-55238917 | MS.gene073250:intron | 40.0% | |
| TTGCATCACCAGAATGTCTT+TGG | - | chr4.3:55239240-55239259 | None:intergenic | 40.0% | |
| ! | ACGAGGAAGTTTTCTCTTGT+AGG | - | chr4.3:55239371-55239390 | None:intergenic | 40.0% |
| ! | CAGAATGTCTTTGGAAGACT+TGG | - | chr4.3:55239231-55239250 | None:intergenic | 40.0% |
| ! | CATTATGTTTAGTGTCGGAG+GGG | - | chr4.3:55239744-55239763 | None:intergenic | 40.0% |
| ! | CTCTCCAATCTTACGGTTTT+GGG | - | chr4.3:55238422-55238441 | None:intergenic | 40.0% |
| !! | ATCTGAAAGCATCTGAGGAA+GGG | - | chr4.3:55238809-55238828 | None:intergenic | 40.0% |
| !! | ATTGGATCTGAAAGCATCTG+AGG | - | chr4.3:55238814-55238833 | None:intergenic | 40.0% |
| !!! | TTGGAGTTCCCTTTTTCAGT+AGG | - | chr4.3:55237962-55237981 | None:intergenic | 40.0% |
| AACAGTAAAGGACTTGGGAC+AGG | + | chr4.3:55239205-55239224 | MS.gene073250:intron | 45.0% | |
| AACTGAGACTTCTAGCACGT+AGG | - | chr4.3:55239897-55239916 | None:intergenic | 45.0% | |
| AAGAACGCAAATGAGCTACG+AGG | - | chr4.3:55239388-55239407 | None:intergenic | 45.0% | |
| AATGTAGAATACCGCGTTGC+AGG | + | chr4.3:55240261-55240280 | MS.gene073250:CDS | 45.0% | |
| ATGGTAGAGGTTCATCATGG+AGG | - | chr4.3:55239869-55239888 | None:intergenic | 45.0% | |
| ATTGTAACACACCTGCAACG+CGG | - | chr4.3:55240275-55240294 | None:intergenic | 45.0% | |
| CTCCAGGAATTGCAAAGACT+CGG | + | chr4.3:55240238-55240257 | MS.gene073250:CDS | 45.0% | |
| GAATGAGTCAGGGTCTGATA+AGG | - | chr4.3:55239069-55239088 | None:intergenic | 45.0% | |
| GGATGAAGCAAATGTGGTTG+TGG | - | chr4.3:55239036-55239055 | None:intergenic | 45.0% | |
| GGGAAAGTAAGACTAACCAG+CGG | - | chr4.3:55237747-55237766 | None:intergenic | 45.0% | |
| GTCGGGATTTGAAAGCGATT+CGG | + | chr4.3:55238590-55238609 | MS.gene073250:CDS | 45.0% | |
| TAAGATTGGAGAGCTTCCCA+AGG | + | chr4.3:55238429-55238448 | MS.gene073250:CDS | 45.0% | |
| TCGGAATCAGGAGTCAAACA+AGG | + | chr4.3:55239968-55239987 | MS.gene073250:intron | 45.0% | |
| TCGGGATTTGAAAGCGATTC+GGG | + | chr4.3:55238591-55238610 | MS.gene073250:CDS | 45.0% | |
| TGATTGTGTCTTGGAAGCGA+TGG | + | chr4.3:55239429-55239448 | MS.gene073250:intron | 45.0% | |
| TGGGAAGCTCTCCAATCTTA+CGG | - | chr4.3:55238429-55238448 | None:intergenic | 45.0% | |
| TGGGACATCGCATTGTTAGT+TGG | - | chr4.3:55238403-55238422 | None:intergenic | 45.0% | |
| TTCCGAGTCTTTGCAATTCC+TGG | - | chr4.3:55240243-55240262 | None:intergenic | 45.0% | |
| TTCTAGCACGTAGGAGTAGA+TGG | - | chr4.3:55239888-55239907 | None:intergenic | 45.0% | |
| ! | GCTCTCCAATCTTACGGTTT+TGG | - | chr4.3:55238423-55238442 | None:intergenic | 45.0% |
| ! | TTTGAAAGCGATTCGGGACA+AGG | + | chr4.3:55238597-55238616 | MS.gene073250:CDS | 45.0% |
| !! | GATCTGAAAGCATCTGAGGA+AGG | - | chr4.3:55238810-55238829 | None:intergenic | 45.0% |
| !!! | GCTGAAGTTTTGGAAAGCGA+CGG | + | chr4.3:55240473-55240492 | MS.gene073250:CDS | 45.0% |
| ACATAGCATTACCGCACCAG+CGG | - | chr4.3:55238021-55238040 | None:intergenic | 50.0% | |
| CAAACGAGAAGCTGTCACCT+TGG | - | chr4.3:55237981-55238000 | None:intergenic | 50.0% | |
| CACGTAGGAGTAGATGGTAG+AGG | - | chr4.3:55239882-55239901 | None:intergenic | 50.0% | |
| CAGCGGTCTCCATCAAAGTA+TGG | - | chr4.3:55238004-55238023 | None:intergenic | 50.0% | |
| CATACTTTGATGGAGACCGC+TGG | + | chr4.3:55238002-55238021 | MS.gene073250:intron | 50.0% | |
| CGAGGTGCATACACTTTGTC+AGG | + | chr4.3:55239615-55239634 | MS.gene073250:CDS | 50.0% | |
| GCATAGTCTGATGGCCACTT+AGG | - | chr4.3:55239102-55239121 | None:intergenic | 50.0% | |
| GCATCTGAGGAAGGGTTTAG+AGG | - | chr4.3:55238801-55238820 | None:intergenic | 50.0% | |
| GCCGTGAAGTGATTGTGTCT+TGG | + | chr4.3:55239420-55239439 | MS.gene073250:intron | 50.0% | |
| TGAATGATAAGCTACGCCGC+TGG | + | chr4.3:55237728-55237747 | MS.gene073250:CDS | 50.0% | |
| TGGAGGAATACTTGGCACGA+CGG | - | chr4.3:55239852-55239871 | None:intergenic | 50.0% | |
| ! | TGTGGGGTTAGTAGCTACAG+TGG | - | chr4.3:55239018-55239037 | None:intergenic | 50.0% |
| GGTACGCGATGGTCAGATGA+TGG | + | chr4.3:55238673-55238692 | MS.gene073250:CDS | 55.0% | |
| TTTGATGGAGACCGCTGGTG+CGG | + | chr4.3:55238007-55238026 | MS.gene073250:intron | 55.0% | |
| ! | AAGCGATTCGGGACAAGGCA+AGG | + | chr4.3:55238602-55238621 | MS.gene073250:CDS | 55.0% |
| AGCGACGGAGCAGTCGTCAT+TGG | + | chr4.3:55240488-55240507 | MS.gene073250:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 55237727 | 55240517 | 55237727 | ID=MS.gene073250 |
| chr4.3 | mRNA | 55237727 | 55240517 | 55237727 | ID=MS.gene073250.t1;Parent=MS.gene073250 |
| chr4.3 | exon | 55237727 | 55237749 | 55237727 | ID=MS.gene073250.t1.exon1;Parent=MS.gene073250.t1 |
| chr4.3 | CDS | 55237727 | 55237749 | 55237727 | ID=cds.MS.gene073250.t1;Parent=MS.gene073250.t1 |
| chr4.3 | exon | 55238378 | 55238710 | 55238378 | ID=MS.gene073250.t1.exon2;Parent=MS.gene073250.t1 |
| chr4.3 | CDS | 55238378 | 55238710 | 55238378 | ID=cds.MS.gene073250.t1;Parent=MS.gene073250.t1 |
| chr4.3 | exon | 55239580 | 55239636 | 55239580 | ID=MS.gene073250.t1.exon3;Parent=MS.gene073250.t1 |
| chr4.3 | CDS | 55239580 | 55239636 | 55239580 | ID=cds.MS.gene073250.t1;Parent=MS.gene073250.t1 |
| chr4.3 | exon | 55239711 | 55239898 | 55239711 | ID=MS.gene073250.t1.exon4;Parent=MS.gene073250.t1 |
| chr4.3 | CDS | 55239711 | 55239898 | 55239711 | ID=cds.MS.gene073250.t1;Parent=MS.gene073250.t1 |
| chr4.3 | exon | 55239978 | 55239995 | 55239978 | ID=MS.gene073250.t1.exon5;Parent=MS.gene073250.t1 |
| chr4.3 | CDS | 55239978 | 55239995 | 55239978 | ID=cds.MS.gene073250.t1;Parent=MS.gene073250.t1 |
| chr4.3 | exon | 55240084 | 55240282 | 55240084 | ID=MS.gene073250.t1.exon6;Parent=MS.gene073250.t1 |
| chr4.3 | CDS | 55240084 | 55240282 | 55240084 | ID=cds.MS.gene073250.t1;Parent=MS.gene073250.t1 |
| chr4.3 | exon | 55240418 | 55240517 | 55240418 | ID=MS.gene073250.t1.exon7;Parent=MS.gene073250.t1 |
| chr4.3 | CDS | 55240418 | 55240517 | 55240418 | ID=cds.MS.gene073250.t1;Parent=MS.gene073250.t1 |
| Gene Sequence |
| Protein sequence |
