AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073351

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073351.t1 MTR_1g054265 94.643 168 9 0 1 168 1 168 7.97e-115 323
MS.gene073351.t1 MTR_1g063160 79.762 168 34 0 1 168 1 168 1.44e-97 279
MS.gene073351.t1 MTR_1g047550 79.167 168 35 0 1 168 1 168 1.26e-95 275
MS.gene073351.t1 MTR_4g131030 71.351 185 36 1 1 168 1 185 1.60e-90 263
MS.gene073351.t1 MTR_8g079502 77.844 167 37 0 1 167 1 167 2.83e-90 261
MS.gene073351.t1 MTR_8g051580 59.524 168 68 0 1 168 1 168 3.24e-69 207
MS.gene073351.t1 MTR_8g046350 51.786 168 75 2 1 168 1 162 1.15e-53 167
MS.gene073351.t1 MTR_4g094632 39.634 164 87 2 1 164 1 152 3.95e-29 105
MS.gene073351.t1 MTR_3g080940 41.538 130 74 1 1 128 8 137 1.26e-28 105
MS.gene073351.t1 MTR_3g052870 41.304 138 78 2 2 136 9 146 2.22e-27 102
MS.gene073351.t1 MTR_1g106070 47.619 105 45 2 2 100 9 109 1.66e-26 99.4
MS.gene073351.t1 MTR_1g105920 48.515 101 50 1 2 100 9 109 3.60e-26 99.8
MS.gene073351.t1 MTR_3g052920 46.535 101 52 2 2 100 9 109 1.02e-25 98.6
MS.gene073351.t1 MTR_1g012570 40.625 128 73 2 2 127 9 135 3.15e-25 97.4
MS.gene073351.t1 MTR_1g105910 47.525 101 51 1 2 100 9 109 4.56e-25 97.1
MS.gene073351.t1 MTR_5g045560 52.500 80 38 0 1 80 8 87 4.66e-25 97.1
MS.gene073351.t1 MTR_1g108510 44.554 101 54 1 2 100 9 109 1.67e-24 95.1
MS.gene073351.t1 MTR_1g077360 44.554 101 54 1 2 100 9 109 3.08e-24 94.7
MS.gene073351.t1 MTR_3g030770 44.554 101 54 1 2 100 9 109 3.20e-24 94.7
MS.gene073351.t1 MTR_0121s0100 44.554 101 54 1 2 100 9 109 4.61e-24 91.7
MS.gene073351.t1 MTR_2g030740 45.545 101 53 1 2 100 9 109 8.07e-24 93.6
MS.gene073351.t1 MTR_2g093190 44.554 101 54 1 2 100 9 109 1.94e-23 92.4
MS.gene073351.t1 MTR_8g043650 45.545 101 53 1 2 100 9 109 1.96e-23 92.8
MS.gene073351.t1 MTR_1g108580 42.574 101 56 1 2 100 9 109 3.48e-23 91.7
MS.gene073351.t1 MTR_4g094638 55.714 70 31 0 1 70 1 70 6.18e-23 90.1
MS.gene073351.t1 MTR_1g075600 51.899 79 38 0 2 80 9 87 1.97e-22 90.1
MS.gene073351.t1 MTR_3g030780 41.818 110 62 1 2 109 9 118 2.51e-22 87.0
MS.gene073351.t1 MTR_8g086290 44.144 111 55 3 2 110 12 117 2.53e-22 88.2
MS.gene073351.t1 MTR_0121s0080 42.373 118 63 2 2 117 9 123 3.04e-22 89.7
MS.gene073351.t1 MTR_5g053390 55.072 69 31 0 2 70 9 77 7.66e-22 88.6
MS.gene073351.t1 MTR_2g085280 49.367 79 40 0 2 80 9 87 7.83e-22 88.6
MS.gene073351.t1 MTR_2g085250 49.367 79 40 0 2 80 9 87 7.83e-22 88.6
MS.gene073351.t1 MTR_2g105290 53.521 71 33 0 1 71 11 81 1.24e-21 86.7
MS.gene073351.t1 MTR_5g055100 46.835 79 42 0 2 80 9 87 2.71e-20 84.3
MS.gene073351.t1 MTR_0003s0590 50.704 71 35 0 1 71 1 71 2.73e-19 82.0
MS.gene073351.t1 MTR_1g105905 48.235 85 42 1 18 100 8 92 6.72e-19 80.5
MS.gene073351.t1 MTR_7g062350 56.716 67 29 0 13 79 32 98 1.20e-18 80.1
MS.gene073351.t1 MTR_7g028448 56.140 57 25 0 14 70 24 80 3.05e-18 77.4
MS.gene073351.t1 MTR_4g036915 56.140 57 25 0 14 70 24 80 3.05e-18 77.4
MS.gene073351.t1 MTR_2g009890 52.055 73 35 0 1 73 1 73 1.16e-17 78.2
MS.gene073351.t1 MTR_3g452380 41.346 104 57 1 1 100 16 119 1.18e-17 77.4
MS.gene073351.t1 MTR_5g066960 55.000 60 27 0 1 60 1 60 1.39e-17 72.8
MS.gene073351.t1 MTR_5g066180 47.826 69 36 0 1 69 1 69 1.92e-17 76.6
MS.gene073351.t1 MTR_8g033220 41.667 96 54 1 1 96 1 94 4.49e-17 75.5
MS.gene073351.t1 MTR_1g053070 49.275 69 35 0 1 69 1 69 4.78e-17 75.9
MS.gene073351.t1 MTR_8g033220 41.667 96 54 1 1 96 1 94 5.27e-17 75.5
MS.gene073351.t1 MTR_8g033270 46.667 75 40 0 1 75 1 75 6.49e-17 75.9
MS.gene073351.t1 MTR_3g005530 49.296 71 36 0 1 71 1 71 6.99e-17 75.1
MS.gene073351.t1 MTR_2g017865 50.704 71 35 0 1 71 16 86 9.29e-17 75.5
MS.gene073351.t1 MTR_1g101970 44.444 81 45 0 1 81 1 81 1.29e-16 73.6
MS.gene073351.t1 MTR_7g075870 37.143 105 63 1 1 105 1 102 1.31e-16 74.3
MS.gene073351.t1 MTR_4g127140 52.113 71 34 0 1 71 11 81 3.59e-16 72.4
MS.gene073351.t1 MTR_4g102530 47.826 69 36 0 1 69 1 69 3.95e-16 72.8
MS.gene073351.t1 MTR_8g087860 49.296 71 36 0 1 71 17 87 4.78e-16 73.2
MS.gene073351.t1 MTR_6g464720 35.971 139 79 4 1 134 1 134 6.85e-16 72.8
MS.gene073351.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 6.88e-16 72.8
MS.gene073351.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 7.40e-16 72.4
MS.gene073351.t1 MTR_7g075870 55.172 58 26 0 1 58 1 58 8.02e-16 72.0
MS.gene073351.t1 MTR_3g067875 50.820 61 29 1 18 77 8 68 8.76e-16 68.6
MS.gene073351.t1 MTR_4g093970 45.588 68 37 0 1 68 27 94 1.46e-15 72.0
MS.gene073351.t1 MTR_5g021270 37.895 95 50 2 1 93 1 88 1.83e-15 71.6
MS.gene073351.t1 MTR_5g021270 37.895 95 50 2 1 93 1 88 1.94e-15 71.2
MS.gene073351.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 2.87e-15 67.0
MS.gene073351.t1 MTR_1g108500 64.583 48 17 0 18 65 113 160 3.16e-15 72.0
MS.gene073351.t1 MTR_3g113030 38.889 90 40 1 1 75 1 90 3.38e-15 70.9
MS.gene073351.t1 MTR_5g046790 50.000 58 29 0 1 58 1 58 4.23e-15 70.1
MS.gene073351.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 4.62e-15 67.8
MS.gene073351.t1 MTR_1g038300 37.778 90 54 1 1 88 1 90 5.16e-15 70.5
MS.gene073351.t1 MTR_5g032150 52.632 57 27 0 1 57 1 57 6.45e-15 70.1
MS.gene073351.t1 MTR_5g032520 52.632 57 27 0 1 57 1 57 7.27e-15 69.7
MS.gene073351.t1 MTR_4g109830 42.857 70 39 1 1 69 1 70 8.47e-15 69.7
MS.gene073351.t1 MTR_7g016630 31.579 114 72 2 1 113 1 109 1.02e-14 69.7
MS.gene073351.t1 MTR_4g093030 53.448 58 27 0 1 58 1 58 1.26e-14 67.8
MS.gene073351.t1 MTR_1g029670 40.000 65 39 0 1 65 1 65 1.44e-14 68.2
MS.gene073351.t1 MTR_4g084740 45.205 73 39 1 1 72 1 73 1.62e-14 70.1
MS.gene073351.t1 MTR_3g067910 49.206 63 32 0 18 80 6 68 2.02e-14 65.9
MS.gene073351.t1 MTR_3g102570 35.644 101 64 1 1 100 1 101 2.24e-14 69.7
MS.gene073351.t1 MTR_7g016600 52.632 57 27 0 1 57 1 57 2.25e-14 68.9
MS.gene073351.t1 MTR_8g066260 50.000 58 29 0 1 58 1 58 2.25e-14 68.6
MS.gene073351.t1 MTR_3g088615 41.538 65 38 0 1 65 1 65 2.64e-14 67.4
MS.gene073351.t1 MTR_3g109930 34.146 123 74 2 1 122 1 117 2.65e-14 67.4
MS.gene073351.t1 MTR_3g084980 54.386 57 26 0 1 57 1 57 4.41e-14 67.8
MS.gene073351.t1 MTR_8g097090 52.632 57 27 0 1 57 1 57 6.55e-14 67.4
MS.gene073351.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 6.67e-14 66.6
MS.gene073351.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 7.49e-14 66.2
MS.gene073351.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 8.14e-14 66.6
MS.gene073351.t1 MTR_6g015975 52.632 57 27 0 1 57 1 57 8.20e-14 67.4
MS.gene073351.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 8.39e-14 66.2
MS.gene073351.t1 MTR_4g109810 50.877 57 28 0 1 57 1 57 1.67e-13 66.2
MS.gene073351.t1 MTR_5g041650 50.000 54 27 0 1 54 38 91 1.77e-13 67.4
MS.gene073351.t1 MTR_7g075850 57.143 49 21 0 1 49 1 49 2.77e-13 65.9
MS.gene073351.t1 MTR_1g041615 65.909 44 15 0 15 58 19 62 3.38e-13 63.5
MS.gene073351.t1 MTR_4g108720 38.158 76 45 1 1 74 1 76 2.39e-12 63.9
MS.gene073351.t1 MTR_8g022970 42.647 68 39 0 3 70 19 86 9.39e-12 60.8
MS.gene073351.t1 MTR_3g067870 50.000 52 26 0 18 69 92 143 1.63e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073351.t1 AT2G34440 43.860 171 86 4 1 161 1 171 2.05e-37 127
MS.gene073351.t1 AT3G66656 72.464 69 19 0 1 69 1 69 2.12e-32 114
MS.gene073351.t1 AT2G24840 45.161 124 62 4 1 121 62 182 3.62e-28 105
MS.gene073351.t1 AT5G60440 46.154 130 63 3 2 127 7 133 2.24e-26 101
MS.gene073351.t1 AT1G01530 40.288 139 79 2 1 139 6 140 1.44e-21 88.2
MS.gene073351.t1 AT1G65360 39.450 109 66 0 1 109 6 114 1.02e-20 85.5
MS.gene073351.t1 AT4G36590 33.929 168 85 4 2 160 7 157 1.61e-20 85.5
MS.gene073351.t1 AT3G61120 46.835 79 42 0 1 79 1 79 3.75e-20 84.3
MS.gene073351.t1 AT1G47760 56.061 66 28 1 1 65 1 66 3.76e-20 82.8
MS.gene073351.t1 AT4G22950 42.391 92 49 1 1 92 1 88 1.92e-19 80.9
MS.gene073351.t1 AT5G13790 52.174 69 33 0 1 69 1 69 2.81e-19 82.4
MS.gene073351.t1 AT5G13790 52.174 69 33 0 1 69 1 69 3.02e-19 82.4
MS.gene073351.t1 AT2G45660 37.037 108 65 1 1 108 1 105 4.64e-19 79.3
MS.gene073351.t1 AT1G72350 38.462 130 76 2 2 129 43 170 5.58e-19 80.9
MS.gene073351.t1 AT3G57230 50.725 69 34 0 1 69 1 69 7.13e-19 78.6
MS.gene073351.t1 AT4G37940 52.055 73 35 0 1 73 1 73 9.02e-19 80.1
MS.gene073351.t1 AT4G37940 52.055 73 35 0 1 73 1 73 1.21e-18 79.7
MS.gene073351.t1 AT4G37940 52.055 73 35 0 1 73 1 73 1.64e-18 78.6
MS.gene073351.t1 AT4G22950 42.391 92 49 1 1 92 1 88 1.86e-18 79.3
MS.gene073351.t1 AT4G22950 42.391 92 49 1 1 92 1 88 1.86e-18 79.3
MS.gene073351.t1 AT2G45660 37.037 108 65 1 1 108 1 105 2.86e-18 78.6
MS.gene073351.t1 AT3G57230 50.725 69 34 0 1 69 1 69 2.94e-18 79.3
MS.gene073351.t1 AT3G57230 50.725 69 34 0 1 69 1 69 2.94e-18 79.3
MS.gene073351.t1 AT3G57390 49.275 69 35 0 1 69 1 69 7.97e-18 77.8
MS.gene073351.t1 AT4G09960 46.835 79 42 0 1 79 1 79 1.08e-17 77.4
MS.gene073351.t1 AT4G09960 46.835 79 42 0 1 79 1 79 1.11e-17 77.0
MS.gene073351.t1 AT4G09960 46.835 79 42 0 1 79 2 80 1.12e-17 77.4
MS.gene073351.t1 AT3G57390 49.275 69 35 0 1 69 1 69 1.61e-17 77.4
MS.gene073351.t1 AT4G09960 46.835 79 42 0 1 79 11 89 1.74e-17 77.0
MS.gene073351.t1 AT2G22630 49.275 69 35 0 1 69 1 69 2.12e-17 76.6
MS.gene073351.t1 AT2G22630 49.275 69 35 0 1 69 1 69 2.12e-17 76.6
MS.gene073351.t1 AT4G09960 42.268 97 52 1 1 93 96 192 2.41e-17 77.8
MS.gene073351.t1 AT4G09960 46.835 79 42 0 1 79 27 105 2.65e-17 77.0
MS.gene073351.t1 AT2G45650 49.275 69 35 0 1 69 1 69 3.83e-17 76.3
MS.gene073351.t1 AT4G24540 38.947 95 57 1 1 95 1 94 3.93e-17 75.9
MS.gene073351.t1 AT3G04100 47.692 65 34 0 2 66 14 78 4.24e-17 75.5
MS.gene073351.t1 AT2G14210 42.353 85 48 1 1 84 1 85 6.94e-17 75.5
MS.gene073351.t1 AT2G14210 42.353 85 48 1 1 84 1 85 8.49e-17 75.1
MS.gene073351.t1 AT1G28460 31.613 155 91 3 2 141 8 162 1.33e-16 73.6
MS.gene073351.t1 AT1G29962 44.928 69 38 0 2 70 8 76 1.37e-16 73.6
MS.gene073351.t1 AT3G54340 39.560 91 40 1 1 76 1 91 2.90e-16 73.6
MS.gene073351.t1 AT2G42830 38.462 104 60 1 1 100 16 119 3.14e-16 73.9
MS.gene073351.t1 AT2G42830 38.462 104 60 1 1 100 16 119 3.33e-16 73.9
MS.gene073351.t1 AT5G51860 36.190 105 65 1 1 105 1 103 3.80e-16 73.2
MS.gene073351.t1 AT5G51860 36.190 105 65 1 1 105 1 103 4.00e-16 72.8
MS.gene073351.t1 AT5G10140 54.386 57 26 0 1 57 1 57 4.22e-16 72.0
MS.gene073351.t1 AT5G51870 45.833 72 39 0 1 72 1 72 4.48e-16 72.0
MS.gene073351.t1 AT3G58780 38.462 104 60 1 1 100 16 119 4.53e-16 73.6
MS.gene073351.t1 AT3G58780 38.462 104 60 1 1 100 22 125 5.11e-16 73.6
MS.gene073351.t1 AT5G20240 43.038 79 43 1 1 77 1 79 5.95e-16 71.2
MS.gene073351.t1 AT5G51870 45.833 72 39 0 1 72 1 72 6.23e-16 72.4
MS.gene073351.t1 AT5G10140 53.448 58 27 0 1 58 1 58 6.91e-16 71.6
MS.gene073351.t1 AT5G10140 54.386 57 26 0 1 57 1 57 7.04e-16 71.6
MS.gene073351.t1 AT5G65070 50.000 58 29 0 1 58 1 58 7.25e-16 70.9
MS.gene073351.t1 AT3G58780 38.462 104 60 1 1 100 16 119 7.37e-16 73.2
MS.gene073351.t1 AT5G51870 45.833 72 39 0 1 72 24 95 7.91e-16 72.0
MS.gene073351.t1 AT1G46408 48.684 76 33 2 1 70 1 76 8.22e-16 73.2
MS.gene073351.t1 AT4G11880 55.172 58 26 0 1 58 1 58 8.28e-16 71.2
MS.gene073351.t1 AT4G11880 55.172 58 26 0 1 58 1 58 8.28e-16 71.2
MS.gene073351.t1 AT2G22540 54.386 57 26 0 1 57 1 57 8.62e-16 72.4
MS.gene073351.t1 AT2G22540 54.386 57 26 0 1 57 1 57 8.62e-16 72.4
MS.gene073351.t1 AT5G10140 54.386 57 26 0 1 57 1 57 9.04e-16 71.6
MS.gene073351.t1 AT5G51870 45.833 72 39 0 1 72 1 72 1.06e-15 72.0
MS.gene073351.t1 AT5G51870 45.833 72 39 0 1 72 11 82 1.40e-15 71.6
MS.gene073351.t1 AT5G20240 43.038 79 43 1 1 77 1 79 1.85e-15 71.2
MS.gene073351.t1 AT5G65070 50.000 58 29 0 1 58 1 58 1.89e-15 70.9
MS.gene073351.t1 AT4G11880 55.172 58 26 0 1 58 1 58 2.19e-15 71.2
MS.gene073351.t1 AT4G11880 55.172 58 26 0 1 58 1 58 2.19e-15 71.2
MS.gene073351.t1 AT4G18960 38.835 103 59 1 2 100 18 120 2.25e-15 71.6
MS.gene073351.t1 AT3G30260 54.386 57 26 0 1 57 1 57 2.48e-15 71.6
MS.gene073351.t1 AT1G77980 46.575 73 38 1 1 72 1 73 2.91e-15 72.0
MS.gene073351.t1 AT5G65070 47.692 65 32 1 1 63 1 65 3.13e-15 70.9
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 3.39e-15 69.3
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 3.39e-15 69.3
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 3.39e-15 69.3
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 4.70e-15 68.9
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 4.70e-15 68.9
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 4.70e-15 68.9
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 4.70e-15 68.9
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 4.70e-15 68.9
MS.gene073351.t1 AT5G65070 50.000 58 29 0 1 58 1 58 4.81e-15 70.5
MS.gene073351.t1 AT1G71692 47.222 72 37 1 1 71 1 72 5.39e-15 70.1
MS.gene073351.t1 AT5G65070 50.000 58 29 0 1 58 1 58 5.59e-15 69.7
MS.gene073351.t1 AT2G22540 60.000 50 20 0 1 50 1 50 5.70e-15 70.1
MS.gene073351.t1 AT1G22130 45.205 73 39 1 1 72 1 73 6.68e-15 71.2
MS.gene073351.t1 AT3G58780 54.237 59 27 0 1 59 16 74 7.74e-15 70.1
MS.gene073351.t1 AT1G77950 45.205 73 39 1 1 72 1 73 8.34e-15 70.1
MS.gene073351.t1 AT1G77950 45.205 73 39 1 1 72 1 73 8.34e-15 70.1
MS.gene073351.t1 AT1G77950 45.205 73 39 1 1 72 1 73 8.34e-15 70.1
MS.gene073351.t1 AT1G77950 45.205 73 39 1 1 72 1 73 8.34e-15 70.1
MS.gene073351.t1 AT3G58780 55.172 58 26 0 1 58 16 73 9.21e-15 70.1
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 1.10e-14 68.9
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 1.10e-14 68.9
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 1.10e-14 68.9
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 1.17e-14 68.9
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 1.17e-14 68.9
MS.gene073351.t1 AT5G62165 38.554 83 51 0 1 83 1 83 1.37e-14 66.2
MS.gene073351.t1 AT1G17310 52.055 73 33 1 2 74 48 118 1.46e-14 68.9
MS.gene073351.t1 AT1G69120 51.724 58 28 0 1 58 1 58 1.49e-14 69.3
MS.gene073351.t1 AT1G17310 52.055 73 33 1 2 74 59 129 1.73e-14 68.9
MS.gene073351.t1 AT5G60910 50.877 57 28 0 1 57 1 57 1.99e-14 68.9
MS.gene073351.t1 AT2G03710 52.632 57 27 0 1 57 1 57 2.03e-14 67.8
MS.gene073351.t1 AT1G18750 40.789 76 43 1 1 74 1 76 2.34e-14 70.1
MS.gene073351.t1 AT1G18750 40.789 76 43 1 1 74 1 76 2.73e-14 69.7
MS.gene073351.t1 AT1G18750 40.789 76 43 1 1 74 1 76 2.74e-14 69.7
MS.gene073351.t1 AT1G69120 51.724 58 28 0 1 58 1 58 3.12e-14 68.6
MS.gene073351.t1 AT1G26310 50.000 58 29 0 1 58 1 58 3.71e-14 68.6
MS.gene073351.t1 AT5G15800 52.632 57 27 0 1 57 1 57 4.22e-14 68.2
MS.gene073351.t1 AT5G65060 50.909 55 27 0 1 55 1 55 4.42e-14 67.0
MS.gene073351.t1 AT1G69540 44.000 75 41 1 1 74 1 75 4.97e-14 68.9
MS.gene073351.t1 AT1G69540 44.000 75 41 1 1 74 1 75 5.13e-14 68.9
MS.gene073351.t1 AT5G23260 59.184 49 20 0 1 49 1 49 6.34e-14 67.4
MS.gene073351.t1 AT5G15800 52.632 57 27 0 1 57 1 57 6.51e-14 67.8
MS.gene073351.t1 AT3G02310 52.632 57 27 0 1 57 1 57 6.58e-14 67.0
MS.gene073351.t1 AT5G23260 59.184 49 20 0 1 49 1 49 6.81e-14 67.8
MS.gene073351.t1 AT1G24260 52.632 57 27 0 1 57 1 57 6.86e-14 67.4
MS.gene073351.t1 AT1G24260 52.632 57 27 0 1 57 1 57 7.30e-14 67.4
MS.gene073351.t1 AT5G65060 50.909 55 27 0 1 55 1 55 7.68e-14 66.2
MS.gene073351.t1 AT1G24260 52.632 57 27 0 1 57 1 57 7.69e-14 67.4
MS.gene073351.t1 AT4G37435 29.605 152 85 5 1 151 1 131 7.98e-14 66.2
MS.gene073351.t1 AT5G23260 59.184 49 20 0 1 49 17 65 8.38e-14 67.4
MS.gene073351.t1 AT3G02310 52.632 57 27 0 1 57 1 57 8.42e-14 67.4
MS.gene073351.t1 AT5G23260 59.184 49 20 0 1 49 17 65 8.63e-14 67.4
MS.gene073351.t1 AT5G65060 50.909 55 27 0 1 55 1 55 9.44e-14 66.2
MS.gene073351.t1 AT2G03710 52.632 57 27 0 1 57 1 57 1.01e-13 67.4
MS.gene073351.t1 AT2G03710 52.632 57 27 0 1 57 1 57 1.05e-13 67.0
MS.gene073351.t1 AT5G65050 49.091 55 28 0 1 55 1 55 1.10e-13 65.9
MS.gene073351.t1 AT5G65080 49.091 55 28 0 1 55 8 62 1.82e-13 65.5
MS.gene073351.t1 AT5G65080 49.091 55 28 0 1 55 8 62 2.19e-13 65.5
MS.gene073351.t1 AT1G28450 29.448 163 95 4 2 146 8 168 2.49e-13 65.1
MS.gene073351.t1 AT5G65050 49.091 55 28 0 1 55 1 55 2.74e-13 64.7
MS.gene073351.t1 AT5G65050 49.091 55 28 0 1 55 1 55 2.91e-13 64.7
MS.gene073351.t1 AT5G65050 49.091 55 28 0 1 55 1 55 2.92e-13 65.1
MS.gene073351.t1 AT2G03060 42.105 76 42 2 1 74 1 76 1.85e-12 64.3
MS.gene073351.t1 AT2G03060 42.105 76 42 2 1 74 1 76 1.97e-12 64.3
MS.gene073351.t1 AT2G03060 42.105 76 42 2 1 74 1 76 1.97e-12 64.3
MS.gene073351.t1 AT2G03060 42.105 76 42 2 1 74 1 76 1.97e-12 64.3
MS.gene073351.t1 AT2G26320 43.103 58 33 0 1 58 17 74 2.29e-12 60.8
MS.gene073351.t1 AT5G49490 43.056 72 37 1 3 70 46 117 2.84e-12 63.5
MS.gene073351.t1 AT1G60920 42.466 73 37 2 3 70 5 77 3.36e-12 62.0
MS.gene073351.t1 AT5G38620 40.000 75 41 1 3 73 6 80 1.44e-11 62.0
MS.gene073351.t1 AT5G49420 40.278 72 39 1 3 70 8 79 1.79e-11 61.6
MS.gene073351.t1 AT1G77080 64.103 39 14 0 1 39 1 39 4.73e-11 58.5
MS.gene073351.t1 AT1G77080 64.103 39 14 0 1 39 1 39 5.15e-11 58.2
MS.gene073351.t1 AT1G77080 64.103 39 14 0 1 39 1 39 5.21e-11 58.5
MS.gene073351.t1 AT1G77080 64.103 39 14 0 1 39 1 39 8.71e-11 58.5

Find 32 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAACAATCCTTATTCTTT+TGG 0.240671 1.4:+43306163 MS.gene073351:CDS
CTCATCTTATTCTCCAAATA+TGG 0.248298 1.4:+43306261 MS.gene073351:CDS
CCTGGGTGACCAAAAGAATA+AGG 0.337629 1.4:-43306172 None:intergenic
CCTATGGAATTCATGCGATT+AGG 0.390950 1.4:-43306232 None:intergenic
CTAGAACTTGTTGAGGTGTT+GGG 0.408328 1.4:+43306295 MS.gene073351:CDS
ATGTTTGATGCTTCTAGCTC+AGG 0.413597 1.4:+43306474 MS.gene073351:CDS
GCTATTGTTGTGTTCTCTCC+AGG 0.420934 1.4:+43306142 MS.gene073351:CDS
AGGCTTTAGTTTCAAATACT+TGG 0.421254 1.4:-43306212 None:intergenic
GCAGCAACAACATCAACTCC+TGG 0.473203 1.4:-43306190 None:intergenic
CACTTTCTCAAAGCGCCGGA+CGG 0.491100 1.4:+43306069 MS.gene073351:CDS
ACTTTCTCAAAGCGCCGGAC+GGG 0.500307 1.4:+43306070 MS.gene073351:CDS
CTCTCAATTCTTTAAGCTCG+AGG 0.514790 1.4:-43306390 None:intergenic
CTTTCTTGAATAAGCCCGTC+CGG 0.521875 1.4:-43306084 None:intergenic
CTAGCTCAGGATCCAGTTGT+GGG 0.528788 1.4:+43306487 MS.gene073351:CDS
ATAAGATGAGGAGTTTCCTA+TGG 0.532335 1.4:-43306248 None:intergenic
TCTAGAACTTGTTGAGGTGT+TGG 0.548141 1.4:+43306294 MS.gene073351:CDS
GAAAGACTCCAACACGAGGC+AGG 0.554822 1.4:+43306045 MS.gene073351:CDS
TCTAGCTCAGGATCCAGTTG+TGG 0.556222 1.4:+43306486 MS.gene073351:CDS
CTATTGTTGTGTTCTCTCCA+GGG 0.556447 1.4:+43306143 MS.gene073351:CDS
CCTAATCGCATGAATTCCAT+AGG 0.557834 1.4:+43306232 MS.gene073351:CDS
AAAGAATAAGGATTGTTCCC+TGG 0.565551 1.4:-43306160 None:intergenic
GTCGCAAAATTAAAATAGAG+AGG 0.572448 1.4:+43306020 MS.gene073351:CDS
ATTGAATCTAGAACTTGTTG+AGG 0.572715 1.4:+43306288 MS.gene073351:CDS
AGGTCACTTTCTCAAAGCGC+CGG 0.595572 1.4:+43306065 MS.gene073351:CDS
CAGCAACAACATCAACTCCT+GGG 0.611229 1.4:-43306189 None:intergenic
CATATTTGGAGAATAAGATG+AGG 0.620665 1.4:-43306260 None:intergenic
TCGCAAAATTAAAATAGAGA+GGG 0.620927 1.4:+43306021 MS.gene073351:CDS
GAAAGTGACCTGCCTCGTGT+TGG 0.631102 1.4:-43306053 None:intergenic
GACTTCAGCTCCGCACAACA+TGG 0.644720 1.4:-43306119 None:intergenic
GTGTTGGGACAAGTTCAAGA+AGG 0.657260 1.4:+43306310 MS.gene073351:CDS
AATGAATTGTCCATGTTGTG+CGG 0.683772 1.4:+43306109 MS.gene073351:CDS
GGGTGAAAGACTCCAACACG+AGG 0.715970 1.4:+43306041 MS.gene073351:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTCAATTTTTCCATATT+TGG - chr1.4:43306277-43306296 None:intergenic 20.0%
! TCGCAAAATTAAAATAGAGA+GGG + chr1.4:43306021-43306040 MS.gene073351:CDS 25.0%
CATATTTGGAGAATAAGATG+AGG - chr1.4:43306263-43306282 None:intergenic 30.0%
CTCATCTTATTCTCCAAATA+TGG + chr1.4:43306261-43306280 MS.gene073351:CDS 30.0%
GTCGCAAAATTAAAATAGAG+AGG + chr1.4:43306020-43306039 MS.gene073351:CDS 30.0%
! AGGCTTTAGTTTCAAATACT+TGG - chr1.4:43306215-43306234 None:intergenic 30.0%
!! ATTGAATCTAGAACTTGTTG+AGG + chr1.4:43306288-43306307 MS.gene073351:CDS 30.0%
AAAGAATAAGGATTGTTCCC+TGG - chr1.4:43306163-43306182 None:intergenic 35.0%
AATGAATTGTCCATGTTGTG+CGG + chr1.4:43306109-43306128 MS.gene073351:CDS 35.0%
ATAAGATGAGGAGTTTCCTA+TGG - chr1.4:43306251-43306270 None:intergenic 35.0%
! GGGAACAATCCTTATTCTTT+TGG + chr1.4:43306163-43306182 MS.gene073351:CDS 35.0%
CCTAATCGCATGAATTCCAT+AGG + chr1.4:43306232-43306251 MS.gene073351:CDS 40.0%
CCTATGGAATTCATGCGATT+AGG - chr1.4:43306235-43306254 None:intergenic 40.0%
CTATTGTTGTGTTCTCTCCA+GGG + chr1.4:43306143-43306162 MS.gene073351:CDS 40.0%
CTCTCAATTCTTTAAGCTCG+AGG - chr1.4:43306393-43306412 None:intergenic 40.0%
!! ATGTTTGATGCTTCTAGCTC+AGG + chr1.4:43306474-43306493 MS.gene073351:CDS 40.0%
!! CTAGAACTTGTTGAGGTGTT+GGG + chr1.4:43306295-43306314 MS.gene073351:CDS 40.0%
!! TCTAGAACTTGTTGAGGTGT+TGG + chr1.4:43306294-43306313 MS.gene073351:CDS 40.0%
CAGCAACAACATCAACTCCT+GGG - chr1.4:43306192-43306211 None:intergenic 45.0%
CCTGGGTGACCAAAAGAATA+AGG - chr1.4:43306175-43306194 None:intergenic 45.0%
CTTTCTTGAATAAGCCCGTC+CGG - chr1.4:43306087-43306106 None:intergenic 45.0%
GCTATTGTTGTGTTCTCTCC+AGG + chr1.4:43306142-43306161 MS.gene073351:CDS 45.0%
GTGTTGGGACAAGTTCAAGA+AGG + chr1.4:43306310-43306329 MS.gene073351:CDS 45.0%
! CCTTATTCTTTTGGTCACCC+AGG + chr1.4:43306172-43306191 MS.gene073351:CDS 45.0%
CTAGCTCAGGATCCAGTTGT+GGG + chr1.4:43306487-43306506 MS.gene073351:CDS 50.0%
GCAGCAACAACATCAACTCC+TGG - chr1.4:43306193-43306212 None:intergenic 50.0%
! AGGTCACTTTCTCAAAGCGC+CGG + chr1.4:43306065-43306084 MS.gene073351:CDS 50.0%
! TCTAGCTCAGGATCCAGTTG+TGG + chr1.4:43306486-43306505 MS.gene073351:CDS 50.0%
GAAAGACTCCAACACGAGGC+AGG + chr1.4:43306045-43306064 MS.gene073351:CDS 55.0%
GAAAGTGACCTGCCTCGTGT+TGG - chr1.4:43306056-43306075 None:intergenic 55.0%
GACTTCAGCTCCGCACAACA+TGG - chr1.4:43306122-43306141 None:intergenic 55.0%
GGGTGAAAGACTCCAACACG+AGG + chr1.4:43306041-43306060 MS.gene073351:CDS 55.0%
!! ACTTTCTCAAAGCGCCGGAC+GGG + chr1.4:43306070-43306089 MS.gene073351:CDS 55.0%
!! CACTTTCTCAAAGCGCCGGA+CGG + chr1.4:43306069-43306088 MS.gene073351:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 43306013 43306518 43306013 ID=MS.gene073351
chr1.4 mRNA 43306013 43306518 43306013 ID=MS.gene073351.t1;Parent=MS.gene073351
chr1.4 exon 43306013 43306518 43306013 ID=MS.gene073351.t1.exon1;Parent=MS.gene073351.t1
chr1.4 CDS 43306013 43306518 43306013 ID=cds.MS.gene073351.t1;Parent=MS.gene073351.t1
Gene Sequence

>MS.gene073351

ATGGGTCGTCGCAAAATTAAAATAGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACTTTCTCAAAGCGCCGGACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATGTTGTGCGGAGCTGAAGTCGCTATTGTTGTGTTCTCTCCAGGGAACAATCCTTATTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGTATTTGAAACTAAAGCCTAATCGCATGAATTCCATAGGAAACTCCTCATCTTATTCTCCAAATATGGAAAAATTGAATCTAGAACTTGTTGAGGTGTTGGGACAAGTTCAAGAAGGTGAAAAGCAAGCTAAGAATCATGATGAGATTCTGAAGCAAAACAACGTGACAAAACTCCTCGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATCGAGATATCAGAATGTTTGATGCTTCTAGCTCAGGATCCAGTTGTGGGAATAAAAGA
Protein sequence

>MS.gene073351.t1

MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSMLCGAEVAIVVFSPGNNPYSFGHPGVDVVAAKYLKLKPNRMNSIGNSSSYSPNMEKLNLELVEVLGQVQEGEKQAKNHDEILKQNNVTKLLELKELRDSYKELQDCIKLRLSDIEISECLMLLAQDPVVGIK