AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073361

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073361.t1 MTR_8g040560 58.031 193 73 2 2 186 749 941 8.12e-66 228
MS.gene073361.t1 MTR_8g040560 64.286 140 50 0 308 447 744 883 6.99e-52 188
MS.gene073361.t1 MTR_8g040560 59.140 93 30 2 181 269 744 832 3.49e-23 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073361.t1 AT3G12280 47.150 193 83 5 2 186 740 921 4.27e-43 162
MS.gene073361.t1 AT3G12280 58.955 134 51 2 308 441 735 864 5.94e-40 153
MS.gene073361.t1 AT3G12280 53.763 93 35 2 181 269 735 823 3.64e-19 90.9
MS.gene073361.t1 AT3G12280 47.150 193 83 5 2 186 740 921 4.27e-43 162
MS.gene073361.t1 AT3G12280 58.955 134 51 2 308 441 735 864 5.94e-40 153
MS.gene073361.t1 AT3G12280 53.763 93 35 2 181 269 735 823 3.64e-19 90.9

Find 92 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTAGAGCCACTGCTTT+TGG 0.194717 2.4:+54764450 MS.gene073361:CDS
AGAGATGTGTTCGCTCATTT+AGG 0.300406 2.4:-54762149 None:intergenic
TGTTGGGTGAAGTCAGAATT+AGG 0.300929 2.4:+54764010 MS.gene073361:CDS
AGAGATGGGGCTGTTGAGTT+AGG 0.313908 2.4:-54763169 None:intergenic
TTGGGAGCAGTCAGAATAAA+TGG 0.315321 2.4:+54763068 MS.gene073361:CDS
GGCCATCTAGCTCAATATCT+TGG 0.322146 2.4:+54762691 MS.gene073361:intron
AAGCCTTTCTGTTATGTTTG+TGG 0.348328 2.4:+54763739 MS.gene073361:CDS
GCTCGGAACATTGAGTTAAA+TGG 0.368695 2.4:-54763694 None:intergenic
TTTCTCCTAGATCATTATGT+TGG 0.375290 2.4:+54763993 MS.gene073361:intron
CGTACCTCTGATGATGATAA+TGG 0.381250 2.4:-54762796 None:intergenic
CGTATTTGTTGATTGGTCAT+TGG 0.390654 2.4:+54764345 MS.gene073361:CDS
TTGATAGCGTATTTGTTGAT+TGG 0.394006 2.4:+54764338 MS.gene073361:CDS
AGAAGCAACACAACATGATT+TGG 0.399003 2.4:-54762191 None:intergenic
TGATGCATAACAGGAAATCT+TGG 0.404678 2.4:-54762736 None:intergenic
GGAAGCAAAACAAAATGATT+AGG 0.405318 2.4:-54763211 None:intergenic
TCTGTCGATGTAGGATTCTC+TGG 0.407643 2.4:-54764092 None:intergenic
AAGATTTCCTGTTATGCATC+AGG 0.417025 2.4:+54762738 MS.gene073361:CDS
TTCTCCTAGATCATTATGTT+GGG 0.426785 2.4:+54763994 MS.gene073361:intron
TCAGCATCTGGTAAAACAAT+AGG 0.435290 2.4:+54764379 MS.gene073361:CDS
TTCGCTCATTTAGGATTCGC+TGG 0.448904 2.4:-54762140 None:intergenic
CATTCCATCTGTACGGCCAC+TGG 0.448964 2.4:+54762489 MS.gene073361:CDS
ACAAGATAGAGGAGAATGTA+GGG 0.450042 2.4:+54763117 MS.gene073361:CDS
TTATAACCTCCTTAAAAGTC+AGG 0.453306 2.4:-54764276 None:intergenic
ACCCAAGATATTGAGCTAGA+TGG 0.454692 2.4:-54762693 None:intergenic
GCATGCAAGGACTCAGCATC+TGG 0.460162 2.4:+54764367 MS.gene073361:CDS
CTGTGGTTGCATTCTATAGC+TGG 0.465799 2.4:-54763349 None:intergenic
TGTTTCCTAGATCATTATGT+TGG 0.470021 2.4:+54763049 MS.gene073361:intron
ATCTGTACGGCCACTGGTGT+TGG 0.471107 2.4:+54762495 MS.gene073361:CDS
ACCTCCTTAAAAGTCAGGCT+TGG 0.471643 2.4:-54764271 None:intergenic
GTTTCCTAGATCATTATGTT+GGG 0.473365 2.4:+54763050 MS.gene073361:intron
TATGAAAATCAGAGAAGAGA+TGG 0.474821 2.4:-54763184 None:intergenic
GCCATCTAGCTCAATATCTT+GGG 0.477261 2.4:+54762692 MS.gene073361:CDS
GATGCATAACAGGAAATCTT+GGG 0.487318 2.4:-54762735 None:intergenic
AGGAGCATGGTTGAAATGCT+AGG 0.489518 2.4:+54764030 MS.gene073361:CDS
TGTTGGAACTTGACACTGAT+GGG 0.497947 2.4:+54762512 MS.gene073361:CDS
AGAATTATCTCACAAGATAG+AGG 0.499854 2.4:+54763106 MS.gene073361:CDS
CTATAATCTCTCGATAAGTT+AGG 0.501635 2.4:-54763326 None:intergenic
TTGCTTCCATGGAGTTGCAA+AGG 0.505678 2.4:+54763226 MS.gene073361:CDS
GATTCCCCACCATGGCCTGC+GGG 0.509562 2.4:-54762409 None:intergenic
GCTGTTGAGTTAGGATTCGC+TGG 0.511854 2.4:-54763160 None:intergenic
ATCCACCCGCAGGCCATGGT+GGG 0.516966 2.4:+54762404 MS.gene073361:CDS
GATTATCCACCCGCAGGCCA+TGG 0.517608 2.4:+54762400 MS.gene073361:CDS
TAGGGTTATCTCAGCAGATA+AGG 0.519446 2.4:+54764049 MS.gene073361:CDS
AACACCAGTGGCCGTACAGA+TGG 0.519653 2.4:-54762493 None:intergenic
GAGAAACCTTTGCAACTCCA+TGG 0.522428 2.4:-54763232 None:intergenic
CAAACATAACAGAAAGGCTT+GGG 0.525576 2.4:-54763736 None:intergenic
CTTCCACAAACATAACAGAA+AGG 0.528987 2.4:-54763742 None:intergenic
ATGAAAATCAGAGAAGAGAT+GGG 0.529988 2.4:-54763183 None:intergenic
CTATGCATGTGTCTCTCCAA+TGG 0.533378 2.4:+54763781 MS.gene073361:CDS
TATGCATGTGTCTCTCCAAT+GGG 0.533482 2.4:+54763782 MS.gene073361:CDS
TACAATTATCTCAGAGGACA+AGG 0.535986 2.4:+54762097 MS.gene073361:CDS
GTGTTGGAACTTGACACTGA+TGG 0.536302 2.4:+54762511 MS.gene073361:CDS
GAATACGCAGCATGGTTGAA+AGG 0.536616 2.4:+54762073 MS.gene073361:CDS
TTGTTTCTGTGCAGTTGCAA+AGG 0.537353 2.4:+54764158 MS.gene073361:CDS
CACAAGATAGAGGAGAATGT+AGG 0.540522 2.4:+54763116 MS.gene073361:CDS
AAAACGGGTGGTCTGCACTC+TGG 0.541524 2.4:-54762361 None:intergenic
AGAGAGATGTCTGTCGATGT+AGG 0.544858 2.4:-54764101 None:intergenic
GTTTCTCAGATCAGTATGCT+GGG 0.545307 2.4:+54762042 None:intergenic
AGGGTTATCTCAGCAGATAA+GGG 0.550907 2.4:+54764050 MS.gene073361:CDS
TATCCACCCGCAGGCCATGG+TGG 0.554294 2.4:+54762403 MS.gene073361:CDS
GAAGTTGATAATACAAAGGA+TGG 0.555096 2.4:+54762562 MS.gene073361:CDS
TCCCCACCATGGCCTGCGGG+TGG 0.558516 2.4:-54762406 None:intergenic
GGAGCATGGTTGAAATGCTA+GGG 0.563018 2.4:+54764031 MS.gene073361:CDS
GGGGAATCTACAAGTAAGAC+AGG 0.563554 2.4:+54762424 MS.gene073361:CDS
AAAAGCAGTGGCTCTACAGA+AGG 0.569508 2.4:-54764448 None:intergenic
TTTGTTGATTATCCACCCGC+AGG 0.570800 2.4:+54762394 MS.gene073361:CDS
TGATTGGTCATTGGCATGCA+AGG 0.572680 2.4:+54764354 MS.gene073361:CDS
TTTGGAACTTGGCGCTGAAG+GGG 0.574775 2.4:+54764468 MS.gene073361:CDS
AGATTCCCCACCATGGCCTG+CGG 0.579031 2.4:-54762410 None:intergenic
ACAAACATAACAGAAAGGCT+TGG 0.584566 2.4:-54763737 None:intergenic
TCCACCCGCAGGCCATGGTG+GGG 0.593690 2.4:+54762405 MS.gene073361:CDS
ATCTACAAGTAAGACAGGAC+AGG 0.597971 2.4:+54762429 MS.gene073361:CDS
CTCTCCAATGGGATCATCTG+AGG 0.599886 2.4:+54763793 MS.gene073361:CDS
CTCTCCATTATCATCATCAG+AGG 0.605230 2.4:+54762792 MS.gene073361:CDS
AGCAATCAGAATACGCAGCA+TGG 0.611965 2.4:+54762065 MS.gene073361:CDS
TTGCTTCTATATAGTCACAC+AGG 0.612064 2.4:+54762206 MS.gene073361:CDS
TACTTGTAGATTCCCCACCA+TGG 0.614021 2.4:-54762417 None:intergenic
AGTACCTCAGATGATCCCAT+TGG 0.619413 2.4:-54763797 None:intergenic
ATAACAGGAAATCTTGGGAA+AGG 0.622579 2.4:-54762730 None:intergenic
AGCAGTCAGAATAAATGGCA+TGG 0.631825 2.4:+54763073 MS.gene073361:CDS
AGCTGAAGTTGATAATACAA+AGG 0.636932 2.4:+54762558 MS.gene073361:CDS
CAAGATAGAGGAGAATGTAG+GGG 0.637690 2.4:+54763118 MS.gene073361:CDS
TGAAGTCAGAATTAGGAGCA+TGG 0.644566 2.4:+54764017 MS.gene073361:CDS
GCGCCAAGTTCCAAAAGCAG+TGG 0.653587 2.4:-54764460 None:intergenic
TGAAAATCAGAGAAGAGATG+GGG 0.664198 2.4:-54763182 None:intergenic
ACAATTATCTCAGAGGACAA+GGG 0.675707 2.4:+54762098 MS.gene073361:CDS
AAATGATGTTGTCAATATGA+CGG 0.676022 2.4:-54764131 None:intergenic
GTGTCAAGTTCCAACACCAG+TGG 0.676314 2.4:-54762505 None:intergenic
AAAGGCTACAATTATCTCAG+AGG 0.680336 2.4:+54762091 MS.gene073361:CDS
GTTGGAACTTGACACTGATG+GGG 0.723181 2.4:+54762513 MS.gene073361:CDS
AGAGACACATGCATAGTGTG+TGG 0.766106 2.4:-54763774 None:intergenic
AAAACTGGTGGTGTGCACTG+TGG 0.770580 2.4:-54763366 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAACTATGAAAAAC+TGG - chr2.4:54763384-54763403 None:intergenic 15.0%
!!! TATAGATAATTTTATGTCAA+AGG + chr2.4:54763946-54763965 MS.gene073361:intron 15.0%
!!! TTCATAGTTAATTTTTTGAT+TGG + chr2.4:54763388-54763407 MS.gene073361:intron 15.0%
!! AAAAGAAAAGAATGAGAAAA+CGG - chr2.4:54763299-54763318 None:intergenic 20.0%
!! AAAAGAATAGAATGAGAAAA+TGG - chr2.4:54762279-54762298 None:intergenic 20.0%
!! AAAATGGGCAAAAAAAAAAA+AGG - chr2.4:54762836-54762855 None:intergenic 20.0%
!! TTGTTTAAATTGAGAAACTT+GGG + chr2.4:54764184-54764203 MS.gene073361:intron 20.0%
!! TTTGTTTAAATTGAGAAACT+TGG + chr2.4:54764183-54764202 MS.gene073361:intron 20.0%
! AAATGATGTTGTCAATATGA+CGG - chr2.4:54764134-54764153 None:intergenic 25.0%
! AACAAATACACTACGAAAAA+CGG - chr2.4:54762380-54762399 None:intergenic 25.0%
! AATTAACTATGAAAAACTGG+TGG - chr2.4:54763381-54763400 None:intergenic 25.0%
! ACCAACTAGAAATAGTATAT+GGG - chr2.4:54763862-54763881 None:intergenic 25.0%
! TAATTCAATAACGAAAACGA+TGG + chr2.4:54763570-54763589 MS.gene073361:intron 25.0%
!! CTTGGGAAACTTAATATTTT+AGG - chr2.4:54763722-54763741 None:intergenic 25.0%
!! TATGTCAAAGGTTTACATTT+TGG + chr2.4:54763958-54763977 MS.gene073361:intron 25.0%
!!! TTAATTTTTTGATTGGCCAT+TGG + chr2.4:54763395-54763414 MS.gene073361:intron 25.0%
AAAGAATAGGATGAGAAAAC+GGG - chr2.4:54764235-54764254 None:intergenic 30.0%
AAATATAGCACACAAGTCAA+TGG - chr2.4:54763669-54763688 None:intergenic 30.0%
AATTGAAAGTAAACTTAGCC+AGG - chr2.4:54762606-54762625 None:intergenic 30.0%
ACAAATACACTACGAAAAAC+GGG - chr2.4:54762379-54762398 None:intergenic 30.0%
ACATAATGATCTAGGAAACA+CGG - chr2.4:54763049-54763068 None:intergenic 30.0%
AGAATTATCTCACAAGATAG+AGG + chr2.4:54763106-54763125 MS.gene073361:CDS 30.0%
ATAGAAAATCACACAAGTCA+AGG - chr2.4:54762666-54762685 None:intergenic 30.0%
ATGAAAATCAGAGAAGAGAT+GGG - chr2.4:54763186-54763205 None:intergenic 30.0%
CAATTGAAAGTAACTTAGCT+AGG - chr2.4:54763610-54763629 None:intergenic 30.0%
CACCAACTAGAAATAGTATA+TGG - chr2.4:54763863-54763882 None:intergenic 30.0%
CTATAATCTCTCGATAAGTT+AGG - chr2.4:54763329-54763348 None:intergenic 30.0%
GAAAGAATAGGATGAGAAAA+CGG - chr2.4:54764236-54764255 None:intergenic 30.0%
GGAAGCAAAACAAAATGATT+AGG - chr2.4:54763214-54763233 None:intergenic 30.0%
GTAATAGACGATGTTATCAA+TGG + chr2.4:54762913-54762932 MS.gene073361:intron 30.0%
GTATAATCTCCCTAAAACTT+AGG - chr2.4:54762322-54762341 None:intergenic 30.0%
GTTTCCTAGATCATTATGTT+GGG + chr2.4:54763050-54763069 MS.gene073361:intron 30.0%
TAGAAAATCACACAAGTCAA+GGG - chr2.4:54762665-54762684 None:intergenic 30.0%
TATGAAAATCAGAGAAGAGA+TGG - chr2.4:54763187-54763206 None:intergenic 30.0%
TGAAATCTGCAAGAAAGAAT+AGG - chr2.4:54764248-54764267 None:intergenic 30.0%
TGTTTCCTAGATCATTATGT+TGG + chr2.4:54763049-54763068 MS.gene073361:intron 30.0%
TTATAACCTCCTTAAAAGTC+AGG - chr2.4:54764279-54764298 None:intergenic 30.0%
TTCGCTTATAAGTCGTAATT+TGG + chr2.4:54762994-54763013 MS.gene073361:intron 30.0%
TTCTCCTAGATCATTATGTT+GGG + chr2.4:54763994-54764013 MS.gene073361:intron 30.0%
TTTACTTTCAATTGCTTTCC+AGG + chr2.4:54762613-54762632 MS.gene073361:intron 30.0%
TTTCTCCTAGATCATTATGT+TGG + chr2.4:54763993-54764012 MS.gene073361:intron 30.0%
! ACATTTTCATTCCATCTGTA+CGG + chr2.4:54762482-54762501 MS.gene073361:CDS 30.0%
! CAAACTGAACCTAAGTTTTA+GGG + chr2.4:54762310-54762329 MS.gene073361:intron 30.0%
! TTGTGTGATTTTCTATTCAC+AGG + chr2.4:54762670-54762689 MS.gene073361:intron 30.0%
!! ACTTAATATTTTAGGAGGCT+CGG - chr2.4:54763714-54763733 None:intergenic 30.0%
!! AGCTGAAGTTGATAATACAA+AGG + chr2.4:54762558-54762577 MS.gene073361:CDS 30.0%
!! GAAGTTGATAATACAAAGGA+TGG + chr2.4:54762562-54762581 MS.gene073361:CDS 30.0%
!! GGGAAACTTAATATTTTAGG+AGG - chr2.4:54763719-54763738 None:intergenic 30.0%
!! TCTCCTATTGTTTTTCCATT+TGG - chr2.4:54763435-54763454 None:intergenic 30.0%
!! TTGATAGCGTATTTGTTGAT+TGG + chr2.4:54764338-54764357 MS.gene073361:CDS 30.0%
!! TTTTTAGTATGGCTTTCCTT+GGG + chr2.4:54763823-54763842 MS.gene073361:intron 30.0%
!!! ACAGGTTTCTCTTTTAACTT+TGG + chr2.4:54762224-54762243 MS.gene073361:intron 30.0%
!!! ATCATTTTGTTTTGCTTCCA+TGG + chr2.4:54763215-54763234 MS.gene073361:CDS 30.0%
!!! GAGGTACTAAGTTTTTAGTA+TGG + chr2.4:54763812-54763831 MS.gene073361:intron 30.0%
AAAGGCTACAATTATCTCAG+AGG + chr2.4:54762091-54762110 MS.gene073361:CDS 35.0%
AAGATTTCCTGTTATGCATC+AGG + chr2.4:54762738-54762757 MS.gene073361:CDS 35.0%
AAGCCTTTCTGTTATGTTTG+TGG + chr2.4:54763739-54763758 MS.gene073361:CDS 35.0%
AATACGCTATCAAAAACTCG+TGG - chr2.4:54764331-54764350 None:intergenic 35.0%
ACAAACATAACAGAAAGGCT+TGG - chr2.4:54763740-54763759 None:intergenic 35.0%
ACAAGATAGAGGAGAATGTA+GGG + chr2.4:54763117-54763136 MS.gene073361:CDS 35.0%
ACAATTATCTCAGAGGACAA+GGG + chr2.4:54762098-54762117 MS.gene073361:CDS 35.0%
AGAAGCAACACAACATGATT+TGG - chr2.4:54762194-54762213 None:intergenic 35.0%
ATAACAGGAAATCTTGGGAA+AGG - chr2.4:54762733-54762752 None:intergenic 35.0%
ATACGCTATCAAAAACTCGT+GGG - chr2.4:54764330-54764349 None:intergenic 35.0%
ATCACTTTCCAGGAAAAGAT+CGG - chr2.4:54762884-54762903 None:intergenic 35.0%
CAAACATAACAGAAAGGCTT+GGG - chr2.4:54763739-54763758 None:intergenic 35.0%
CATAATGATCTAGGAAACAC+GGG - chr2.4:54763048-54763067 None:intergenic 35.0%
CCTAAAACTTAGGTTCAGTT+TGG - chr2.4:54762312-54762331 None:intergenic 35.0%
CTTCCACAAACATAACAGAA+AGG - chr2.4:54763745-54763764 None:intergenic 35.0%
GACTTGTGTGCTATATTTAC+AGG + chr2.4:54763671-54763690 MS.gene073361:intron 35.0%
GATGCATAACAGGAAATCTT+GGG - chr2.4:54762738-54762757 None:intergenic 35.0%
TACAATTATCTCAGAGGACA+AGG + chr2.4:54762097-54762116 MS.gene073361:CDS 35.0%
TCAGCATCTGGTAAAACAAT+AGG + chr2.4:54764379-54764398 MS.gene073361:CDS 35.0%
TGAAAATCAGAGAAGAGATG+GGG - chr2.4:54763185-54763204 None:intergenic 35.0%
TGATGCATAACAGGAAATCT+TGG - chr2.4:54762739-54762758 None:intergenic 35.0%
TGCACCAGTAGGAAAAAAAT+GGG - chr2.4:54762851-54762870 None:intergenic 35.0%
TGGCCAAATGGAAAAACAAT+AGG + chr2.4:54763429-54763448 MS.gene073361:intron 35.0%
TTCACCCAACATAATGATCT+AGG - chr2.4:54764001-54764020 None:intergenic 35.0%
TTGCACCAGTAGGAAAAAAA+TGG - chr2.4:54762852-54762871 None:intergenic 35.0%
TTGCTTCTATATAGTCACAC+AGG + chr2.4:54762206-54762225 MS.gene073361:CDS 35.0%
! AAAACCAAGCCTGACTTTTA+AGG + chr2.4:54764267-54764286 MS.gene073361:CDS 35.0%
! AGTTTTTCCTGATGCATAAC+AGG - chr2.4:54762748-54762767 None:intergenic 35.0%
! CCAAACTGAACCTAAGTTTT+AGG + chr2.4:54762309-54762328 MS.gene073361:intron 35.0%
! CGTATTTGTTGATTGGTCAT+TGG + chr2.4:54764345-54764364 MS.gene073361:CDS 35.0%
! GGAAGTGCAAAAAAAGAGAA+CGG - chr2.4:54763027-54763046 None:intergenic 35.0%
!! GCCCATATACTATTTCTAGT+TGG + chr2.4:54763858-54763877 MS.gene073361:intron 35.0%
!!! AGAGACGCGTAAATTTTTTG+TGG - chr2.4:54762776-54762795 None:intergenic 35.0%
!!! CTTGGGAAAGGTACTATTTT+AGG - chr2.4:54762721-54762740 None:intergenic 35.0%
!!! GAGACGCGTAAATTTTTTGT+GGG - chr2.4:54762775-54762794 None:intergenic 35.0%
!!! GTTTTTAGTATGGCTTTCCT+TGG + chr2.4:54763822-54763841 MS.gene073361:intron 35.0%
!!! TTTGCCCATTTTTTTCCTAC+TGG + chr2.4:54762844-54762863 MS.gene073361:intron 35.0%
AATACACTACGAAAAACGGG+TGG - chr2.4:54762376-54762395 None:intergenic 40.0%
ACCCAAGATATTGAGCTAGA+TGG - chr2.4:54762696-54762715 None:intergenic 40.0%
AGAGATGTGTTCGCTCATTT+AGG - chr2.4:54762152-54762171 None:intergenic 40.0%
AGCAGTCAGAATAAATGGCA+TGG + chr2.4:54763073-54763092 MS.gene073361:CDS 40.0%
AGGGTTATCTCAGCAGATAA+GGG + chr2.4:54764050-54764069 MS.gene073361:CDS 40.0%
ATCTACAAGTAAGACAGGAC+AGG + chr2.4:54762429-54762448 MS.gene073361:CDS 40.0%
CAAGATAGAGGAGAATGTAG+GGG + chr2.4:54763118-54763137 MS.gene073361:CDS 40.0%
CACAAGATAGAGGAGAATGT+AGG + chr2.4:54763116-54763135 MS.gene073361:CDS 40.0%
CTCTCCATTATCATCATCAG+AGG + chr2.4:54762792-54762811 MS.gene073361:CDS 40.0%
GCTCGGAACATTGAGTTAAA+TGG - chr2.4:54763697-54763716 None:intergenic 40.0%
TAGGGTTATCTCAGCAGATA+AGG + chr2.4:54764049-54764068 MS.gene073361:CDS 40.0%
TATGCATGTGTCTCTCCAAT+GGG + chr2.4:54763782-54763801 MS.gene073361:CDS 40.0%
TGAAGTCAGAATTAGGAGCA+TGG + chr2.4:54764017-54764036 MS.gene073361:CDS 40.0%
TGCTCCCAACATAATGATCT+AGG - chr2.4:54763057-54763076 None:intergenic 40.0%
TGTTGGAACTTGACACTGAT+GGG + chr2.4:54762512-54762531 MS.gene073361:CDS 40.0%
TGTTGGGTGAAGTCAGAATT+AGG + chr2.4:54764010-54764029 MS.gene073361:CDS 40.0%
TTGGGAGCAGTCAGAATAAA+TGG + chr2.4:54763068-54763087 MS.gene073361:CDS 40.0%
! CGTACCTCTGATGATGATAA+TGG - chr2.4:54762799-54762818 None:intergenic 40.0%
! GCCATCTAGCTCAATATCTT+GGG + chr2.4:54762692-54762711 MS.gene073361:CDS 40.0%
!! GCTATTTTGTAACTCCTTGC+AGG - chr2.4:54763549-54763568 None:intergenic 40.0%
!! TTGTTTCTGTGCAGTTGCAA+AGG + chr2.4:54764158-54764177 MS.gene073361:CDS 40.0%
ACCTCCTTAAAAGTCAGGCT+TGG - chr2.4:54764274-54764293 None:intergenic 45.0%
ACTTAGCCAGGCAAACAACA+CGG - chr2.4:54762594-54762613 None:intergenic 45.0%
AGAGACACATGCATAGTGTG+TGG - chr2.4:54763777-54763796 None:intergenic 45.0%
AGAGAGATGTCTGTCGATGT+AGG - chr2.4:54764104-54764123 None:intergenic 45.0%
AGCAATCAGAATACGCAGCA+TGG + chr2.4:54762065-54762084 MS.gene073361:CDS 45.0%
AGTACCTCAGATGATCCCAT+TGG - chr2.4:54763800-54763819 None:intergenic 45.0%
CTATGCATGTGTCTCTCCAA+TGG + chr2.4:54763781-54763800 MS.gene073361:CDS 45.0%
CTGCACAAGAATCACTTTCC+AGG - chr2.4:54762894-54762913 None:intergenic 45.0%
CTGGCATAACAATAGAAGCC+TGG - chr2.4:54762634-54762653 None:intergenic 45.0%
CTGTGGTTGCATTCTATAGC+TGG - chr2.4:54763352-54763371 None:intergenic 45.0%
GAATACGCAGCATGGTTGAA+AGG + chr2.4:54762073-54762092 MS.gene073361:CDS 45.0%
GAGAAACCTTTGCAACTCCA+TGG - chr2.4:54763235-54763254 None:intergenic 45.0%
GGAGCATGGTTGAAATGCTA+GGG + chr2.4:54764031-54764050 MS.gene073361:CDS 45.0%
GGGCAAAATGAAAAAGCCCA+AGG - chr2.4:54763842-54763861 None:intergenic 45.0%
GGGGAATCTACAAGTAAGAC+AGG + chr2.4:54762424-54762443 MS.gene073361:CDS 45.0%
GTGTTGGAACTTGACACTGA+TGG + chr2.4:54762511-54762530 MS.gene073361:CDS 45.0%
GTTGGAACTTGACACTGATG+GGG + chr2.4:54762513-54762532 MS.gene073361:CDS 45.0%
GTTGGTGCAAAACACTCAAC+TGG + chr2.4:54763876-54763895 MS.gene073361:intron 45.0%
TACTTGTAGATTCCCCACCA+TGG - chr2.4:54762420-54762439 None:intergenic 45.0%
TCTGTCGATGTAGGATTCTC+TGG - chr2.4:54764095-54764114 None:intergenic 45.0%
TTGCAGGACTTGCATAGCAT+TGG - chr2.4:54763645-54763664 None:intergenic 45.0%
TTGCTTCCATGGAGTTGCAA+AGG + chr2.4:54763226-54763245 MS.gene073361:CDS 45.0%
! AAAAGCAGTGGCTCTACAGA+AGG - chr2.4:54764451-54764470 None:intergenic 45.0%
! ACACTCAACTGGCATTTTCC+TGG + chr2.4:54763887-54763906 MS.gene073361:intron 45.0%
! ACAGCAAACCGATCTTTTCC+TGG + chr2.4:54762873-54762892 MS.gene073361:intron 45.0%
! AGGAGCATGGTTGAAATGCT+AGG + chr2.4:54764030-54764049 MS.gene073361:CDS 45.0%
! CTTGCATAGCATTGGAAGTC+AGG - chr2.4:54763637-54763656 None:intergenic 45.0%
! GGCCATCTAGCTCAATATCT+TGG + chr2.4:54762691-54762710 MS.gene073361:intron 45.0%
! TGATTGGTCATTGGCATGCA+AGG + chr2.4:54764354-54764373 MS.gene073361:CDS 45.0%
! TTCGCTCATTTAGGATTCGC+TGG - chr2.4:54762143-54762162 None:intergenic 45.0%
! TTCTGTAGAGCCACTGCTTT+TGG + chr2.4:54764450-54764469 MS.gene073361:CDS 45.0%
! TTTGTTGATTATCCACCCGC+AGG + chr2.4:54762394-54762413 MS.gene073361:CDS 45.0%
!! ACCAAGCCTGACTTTTAAGG+AGG + chr2.4:54764270-54764289 MS.gene073361:CDS 45.0%
!! CACACAAGTCAATGGATTGC+AGG - chr2.4:54763661-54763680 None:intergenic 45.0%
!! TACTTACCGTGTTGTTTGCC+TGG + chr2.4:54762585-54762604 MS.gene073361:intron 45.0%
!!! GTTTGCTGTTTTGCACCAGT+AGG - chr2.4:54762862-54762881 None:intergenic 45.0%
!!! TTTTGGAACTTGGCGCTGAA+GGG + chr2.4:54764467-54764486 MS.gene073361:CDS 45.0%
AAGAGCAGTGGCTTCACACA+GGG - chr2.4:54763504-54763523 None:intergenic 50.0%
AGAGATGGGGCTGTTGAGTT+AGG - chr2.4:54763172-54763191 None:intergenic 50.0%
CAAGTCAAGGGTTGCAGAAC+TGG - chr2.4:54762653-54762672 None:intergenic 50.0%
CTCTCCAATGGGATCATCTG+AGG + chr2.4:54763793-54763812 MS.gene073361:CDS 50.0%
CTGCTCTTGGAACTTGACAC+TGG + chr2.4:54763516-54763535 MS.gene073361:intron 50.0%
GCTGTTGAGTTAGGATTCGC+TGG - chr2.4:54763163-54763182 None:intergenic 50.0%
GTGTCAAGTTCCAACACCAG+TGG - chr2.4:54762508-54762527 None:intergenic 50.0%
GTGTCAAGTTCCAAGAGCAG+TGG - chr2.4:54763516-54763535 None:intergenic 50.0%
! AAAACTGGTGGTGTGCACTG+TGG - chr2.4:54763369-54763388 None:intergenic 50.0%
! CCTCGTGTACTTCTTTTGCC+AGG - chr2.4:54763908-54763927 None:intergenic 50.0%
! CCTGGCAAAAGAAGTACACG+AGG + chr2.4:54763905-54763924 MS.gene073361:intron 50.0%
! TTTGGAACTTGGCGCTGAAG+GGG + chr2.4:54764468-54764487 MS.gene073361:CDS 50.0%
!!! CTTTTGGAACTTGGCGCTGA+AGG + chr2.4:54764466-54764485 MS.gene073361:CDS 50.0%
!!! GAGCCACTGCTTTTGGAACT+TGG + chr2.4:54764457-54764476 MS.gene073361:CDS 50.0%
AAAACGGGTGGTCTGCACTC+TGG - chr2.4:54762364-54762383 None:intergenic 55.0%
AACACCAGTGGCCGTACAGA+TGG - chr2.4:54762496-54762515 None:intergenic 55.0%
ACACTGGTGTGACACCTGCA+AGG + chr2.4:54763532-54763551 MS.gene073361:intron 55.0%
ATCTGTACGGCCACTGGTGT+TGG + chr2.4:54762495-54762514 MS.gene073361:CDS 55.0%
CAAGAGCAGTGGCTTCACAC+AGG - chr2.4:54763505-54763524 None:intergenic 55.0%
CATTCCATCTGTACGGCCAC+TGG + chr2.4:54762489-54762508 MS.gene073361:CDS 55.0%
CTGTGTGAAGCCACTGCTCT+TGG + chr2.4:54763503-54763522 MS.gene073361:intron 55.0%
GCATGCAAGGACTCAGCATC+TGG + chr2.4:54764367-54764386 MS.gene073361:CDS 55.0%
GCGCCAAGTTCCAAAAGCAG+TGG - chr2.4:54764463-54764482 None:intergenic 55.0%
! TGATTGGCCATTGGCACGCA+TGG + chr2.4:54763404-54763423 MS.gene073361:intron 55.0%
AGATTCCCCACCATGGCCTG+CGG - chr2.4:54762413-54762432 None:intergenic 60.0%
GATTATCCACCCGCAGGCCA+TGG + chr2.4:54762400-54762419 MS.gene073361:CDS 60.0%
!! GCACGCATGGACTGGCCAAA+TGG + chr2.4:54763417-54763436 MS.gene073361:intron 60.0%
ATCCACCCGCAGGCCATGGT+GGG + chr2.4:54762404-54762423 MS.gene073361:CDS 65.0%
GATTCCCCACCATGGCCTGC+GGG - chr2.4:54762412-54762431 None:intergenic 65.0%
GGCCAGTCCATGCGTGCCAA+TGG - chr2.4:54763414-54763433 None:intergenic 65.0%
GGCCATTGGCACGCATGGAC+TGG + chr2.4:54763409-54763428 MS.gene073361:intron 65.0%
TATCCACCCGCAGGCCATGG+TGG + chr2.4:54762403-54762422 MS.gene073361:CDS 65.0%
TCCACCCGCAGGCCATGGTG+GGG + chr2.4:54762405-54762424 MS.gene073361:CDS 70.0%
TCCCCACCATGGCCTGCGGG+TGG - chr2.4:54762409-54762428 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 54762057 54764501 54762057 ID=MS.gene073361
chr2.4 mRNA 54762057 54764501 54762057 ID=MS.gene073361.t1;Parent=MS.gene073361
chr2.4 exon 54762057 54762227 54762057 ID=MS.gene073361.t1.exon1;Parent=MS.gene073361.t1
chr2.4 CDS 54762057 54762227 54762057 ID=cds.MS.gene073361.t1;Parent=MS.gene073361.t1
chr2.4 exon 54762331 54762583 54762331 ID=MS.gene073361.t1.exon2;Parent=MS.gene073361.t1
chr2.4 CDS 54762331 54762583 54762331 ID=cds.MS.gene073361.t1;Parent=MS.gene073361.t1
chr2.4 exon 54762692 54762813 54762692 ID=MS.gene073361.t1.exon3;Parent=MS.gene073361.t1
chr2.4 CDS 54762692 54762813 54762692 ID=cds.MS.gene073361.t1;Parent=MS.gene073361.t1
chr2.4 exon 54763059 54763247 54763059 ID=MS.gene073361.t1.exon4;Parent=MS.gene073361.t1
chr2.4 CDS 54763059 54763247 54763059 ID=cds.MS.gene073361.t1;Parent=MS.gene073361.t1
chr2.4 exon 54763324 54763393 54763324 ID=MS.gene073361.t1.exon5;Parent=MS.gene073361.t1
chr2.4 CDS 54763324 54763393 54763324 ID=cds.MS.gene073361.t1;Parent=MS.gene073361.t1
chr2.4 exon 54763693 54763814 54763693 ID=MS.gene073361.t1.exon6;Parent=MS.gene073361.t1
chr2.4 CDS 54763693 54763814 54763693 ID=cds.MS.gene073361.t1;Parent=MS.gene073361.t1
chr2.4 exon 54764003 54764179 54764003 ID=MS.gene073361.t1.exon7;Parent=MS.gene073361.t1
chr2.4 CDS 54764003 54764179 54764003 ID=cds.MS.gene073361.t1;Parent=MS.gene073361.t1
chr2.4 exon 54764262 54764501 54764262 ID=MS.gene073361.t1.exon8;Parent=MS.gene073361.t1
chr2.4 CDS 54764262 54764501 54764262 ID=cds.MS.gene073361.t1;Parent=MS.gene073361.t1
Gene Sequence

>MS.gene073361

ATGCTGGGAGCAATCAGAATACGCAGCATGGTTGAAAGGCTACAATTATCTCAGAGGACAAGGGAGAACGTATACAGTCTTTTCCAGCGAATCCTAAATGAGCGAACACATCTCTTCTTCAATCGTCATATTGACCAAATCATGTTGTGTTGCTTCTATATAGTCACACAGGTTTCTCTTTTAACTTTGGAAACACGAGAGTGCGTTGTGCTTCGATTACCATTTTCTCATTCTATTCTTTTTTGCAGTTTTCCAAACTGAACCTAAGTTTTAGGGAGATTATACACACAGATACAAACAGCAACCAGAGTGCAGACCACCCGTTTTTCGTAGTGTATTTGTTGATTATCCACCCGCAGGCCATGGTGGGGAATCTACAAGTAAGACAGGACAGGAGCGTGTCGACATTATTACGTTTTACAATGACATTTTCATTCCATCTGTACGGCCACTGGTGTTGGAACTTGACACTGATGGGGAAACTCTAAAAAGTGATCAATTAGCTGAAGTTGATAATACAAAGGATGGTACTTACCGTGTTGTTTGCCTGGCTAAGTTTACTTTCAATTGCTTTCCAGGCTTCTATTGTTATGCCAGTTCTGCAACCCTTGACTTGTGTGATTTTCTATTCACAGGCCATCTAGCTCAATATCTTGGGTCTCCTAAAATAGTACCTTTCCCAAGATTTCCTGTTATGCATCAGGAAAAACTATATCCCACAAAAAATTTACGCGTCTCTCCATTATCATCATCAGAGGTACGAAGTTTCATGTTTGCCTTTTTTTTTTTTGCCCATTTTTTTCCTACTGGTGCAAAACAGCAAACCGATCTTTTCCTGGAAAGTGATTCTTGTGCAGTAATAGACGATGTTATCAATGGTTACGTGAAAGATTTACATTTTCACAGACAATATTTTTAAATTTAATTATTTTGTTGCTTCGCTTATAAGTCGTAATTTGGAGCAATACCGTTCTCTTTTTTTGCACTTCCCGTGTTTCCTAGATCATTATGTTGGGAGCAGTCAGAATAAATGGCATGGCTGAAAAGCTAGAATTATCTCACAAGATAGAGGAGAATGTAGGGGAGAATGTATACTATCTTTTCCAGCGAATCCTAACTCAACAGCCCCATCTCTTCTCTGATTTTCATATTAACCTAATCATTTTGTTTTGCTTCCATGGAGTTGCAAAGGTTTCTCTTTAAGTTTTAGTAATCTGAGAGTGTAATGTGCTTCAATTGCCGTTTTCTCATTCTTTTCTTTTTGCAGAGCCTAACTTATCGAGAGATTATAGCCAGCTATAGAATGCAACCACAGTGCACACCACCAGTTTTTCATAGTTAATTTTTTGATTGGCCATTGGCACGCATGGACTGGCCAAATGGAAAAACAATAGGAGACACACATATCACTAGCATTGCTAAATTTTACAACGATATATTCTTTCCCTGTGTGAAGCCACTGCTCTTGGAACTTGACACTGGTGTGACACCTGCAAGGAGTTACAAAATAGCTTAATTCAATAACGAAAACGATGGTACTTGTTCATTTTCCTAGCTAAGTTACTTTCAATTGTTTTCCTGACTTCCAATGCTATGCAAGTCCTGCAATCCATTGACTTGTGTGCTATATTTACAGGCCATTTAACTCAATGTTCCGAGCCTCCTAAAATATTAAGTTTCCCAAGCCTTTCTGTTATGTTTGTGGAAGAAGTGTCTGCCACACACTATGCATGTGTCTCTCCAATGGGATCATCTGAGGTACTAAGTTTTTAGTATGGCTTTCCTTGGGCTTTTTCATTTTGCCCATATACTATTTCTAGTTGGTGCAAAACACTCAACTGGCATTTTCCTGGCAAAAGAAGTACACGAGGCTGTGACTCTCATGCGCTTATAGATAATTTTATGTCAAAGGTTTACATTTTGGTTGCATTTCTTATTTCTCCTAGATCATTATGTTGGGTGAAGTCAGAATTAGGAGCATGGTTGAAATGCTAGGGTTATCTCAGCAGATAAGGGAGAATGTATACAGTCTATTCCAGAGAATCCTACATCGACAGACATCTCTCTTCTTCAACCGTCATATTGACAACATCATTTTGTGTTGTTTCTGTGCAGTTGCAAAGGTTTTTGTTTAAATTGAGAAACTTGGGTGTATAAATTAATGTGTGTTCAATTCCCGTTTTCTCATCCTATTCTTTCTTGCAGATTTCAAAACCAAGCCTGACTTTTAAGGAGGTTATAAGCATCTATAAGAAGCAACTGCAATGCAACCCACGAGTTTTTGATAGCGTATTTGTTGATTGGTCATTGGCATGCAAGGACTCAGCATCTGGTAAAACAATAGGACATGAGCATGTCGACATTGTTACATTCTGCAATGATATATTTGTTCCTTCTGTAGAGCCACTGCTTTTGGAACTTGGCGCTGAAGGGGAAGCTGTCTAA
Protein sequence

>MS.gene073361.t1

MLGAIRIRSMVERLQLSQRTRENVYSLFQRILNERTHLFFNRHIDQIMLCCFYIVTQGDYTHRYKQQPECRPPVFRSVFVDYPPAGHGGESTSKTGQERVDIITFYNDIFIPSVRPLVLELDTDGETLKSDQLAEVDNTKDGHLAQYLGSPKIVPFPRFPVMHQEKLYPTKNLRVSPLSSSEIIMLGAVRINGMAEKLELSHKIEENVGENVYYLFQRILTQQPHLFSDFHINLIILFCFHGVAKSLTYREIIASYRMQPQCTPPVFHSHLTQCSEPPKILSFPSLSVMFVEEVSATHYACVSPMGSSEIIMLGEVRIRSMVEMLGLSQQIRENVYSLFQRILHRQTSLFFNRHIDNIILCCFCAVAKISKPSLTFKEVISIYKKQLQCNPRVFDSVFVDWSLACKDSASGKTIGHEHVDIVTFCNDIFVPSVEPLLLELGAEGEAV