AlfalfaGEDB | MS.gene073362

M. sativa cultivar XinJiangDaYe / MS.gene073362

KEGG: K04681
GO: GO:0005575 GO:0005634 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0110165
PFAM: PF01857.23 PF01858.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073362.t1	GAU16807.1	82.2	332	47	5	1	331	1	321	9.30E-142	514.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073362.t1	A9UL14	40.8	525	185	12	5	417	428	938	3.3e-87	324.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073362.t1	A0A2K3NW83	63.2	340	45	6	229	542	1	286	5.4e-99	371.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene073362.t1	TR	RB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073362.t1	MTR_8g040560	55.556	207	90	1	216	420	735	941	1.31e-62	226
MS.gene073362.t1	MTR_8g040560	56.875	160	66	1	543	699	726	885	8.40e-49	185
MS.gene073362.t1	MTR_8g040560	41.991	231	100	9	5	213	428	646	2.63e-39	156
MS.gene073362.t1	MTR_8g040560	67.213	61	20	0	415	475	744	804	2.88e-16	83.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073362.t1	AT3G12280	48.077	208	93	4	216	420	726	921	3.42e-48	183
MS.gene073362.t1	AT3G12280	44.749	219	87	7	11	207	426	632	1.91e-42	166
MS.gene073362.t1	AT3G12280	53.947	152	63	4	543	691	717	864	1.05e-39	157
MS.gene073362.t1	AT3G12280	60.656	61	24	0	415	475	735	795	1.41e-13	75.1
MS.gene073362.t1	AT3G12280	48.077	208	93	4	216	420	726	921	3.43e-48	183
MS.gene073362.t1	AT3G12280	44.749	219	87	7	11	207	426	632	1.91e-42	166
MS.gene073362.t1	AT3G12280	53.947	152	63	4	543	691	717	864	1.05e-39	157
MS.gene073362.t1	AT3G12280	60.656	61	24	0	415	475	735	795	1.41e-13	75.1

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Find 157 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACGTGGGTTGCACCG+TGG	0.697661	2.4:-54758658	None:intergenic
AAAACGGGTGACCTGCACTC+TGG	0.568545	2.4:-54755326	None:intergenic
AAAACTGAACCTGAGTTTCT+GGG	0.413033	2.4:+54755277	MS.gene073362:CDS
AAAAGCAGTGGCTCTACAGA+GGG	0.599947	2.4:-54758790	None:intergenic
AAAGGCTACAATTATCCCAA+AGG	0.645341	2.4:+54755054	MS.gene073362:CDS
AAGAGCATGGTTGAAATGCT+AGG	0.508698	2.4:+54758372	MS.gene073362:CDS
AAGATTTCCTGTTATGCATT+GGG	0.406154	2.4:+54755698	MS.gene073362:CDS
AAGCCTTCCTGTTATGTCTG+TGG	0.553212	2.4:+54756674	MS.gene073362:CDS
AAGTAAGTGTATCAAATCTT+CGG	0.469338	2.4:-54754108	None:intergenic
AATCAACAACTTCAGCTAAT+TGG	0.265538	2.4:-54755511	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATACACTGCGAAAAA+CGG	-	chr2.4:54755345-54755364	None:intergenic	30.0%
AACGAAACAAATAGTTGGTT+TGG	-	chr2.4:54757327-54757346	None:intergenic	30.0%
AAGATTTCCTGTTATGCATT+GGG	+	chr2.4:54755698-54755717	MS.gene073362:CDS	30.0%
AATCAACAACTTCAGCTAAT+TGG	-	chr2.4:54755514-54755533	None:intergenic	30.0%
AATCTTCGGATCTTTCTATT+CGG	-	chr2.4:54754097-54754116	None:intergenic	30.0%
AATGCATAACAGGAAATCTT+GGG	-	chr2.4:54755698-54755717	None:intergenic	30.0%
AATTCACTATGAAAAACTGG+TGG	-	chr2.4:54756316-54756335	None:intergenic	30.0%
ACTTGAGTGTATCATTTACT+CGG	-	chr2.4:54757705-54757724	None:intergenic	30.0%
AGAAAATCACACAAGTCAAA+GGG	-	chr2.4:54755624-54755643	None:intergenic	30.0%
AGAAGAAGTTAACATTGCAT+TGG	+	chr2.4:54757154-54757173	MS.gene073362:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	54753938	54758852	54753938	ID=MS.gene073362
chr2.4	mRNA	54753938	54758852	54753938	ID=MS.gene073362.t1;Parent=MS.gene073362
chr2.4	exon	54753938	54754615	54753938	ID=MS.gene073362.t1.exon1;Parent=MS.gene073362.t1
chr2.4	CDS	54753938	54754615	54753938	ID=cds.MS.gene073362.t1;Parent=MS.gene073362.t1
chr2.4	exon	54755014	54755190	54755014	ID=MS.gene073362.t1.exon2;Parent=MS.gene073362.t1
chr2.4	CDS	54755014	54755190	54755014	ID=cds.MS.gene073362.t1;Parent=MS.gene073362.t1
chr2.4	exon	54755272	54755542	54755272	ID=MS.gene073362.t1.exon3;Parent=MS.gene073362.t1
chr2.4	CDS	54755272	54755542	54755272	ID=cds.MS.gene073362.t1;Parent=MS.gene073362.t1
chr2.4	exon	54755652	54755773	54755652	ID=MS.gene073362.t1.exon4;Parent=MS.gene073362.t1
chr2.4	CDS	54755652	54755773	54755652	ID=cds.MS.gene073362.t1;Parent=MS.gene073362.t1
chr2.4	exon	54755981	54756157	54755981	ID=MS.gene073362.t1.exon5;Parent=MS.gene073362.t1
chr2.4	CDS	54755981	54756157	54755981	ID=cds.MS.gene073362.t1;Parent=MS.gene073362.t1
chr2.4	exon	54756448	54756526	54756448	ID=MS.gene073362.t1.exon6;Parent=MS.gene073362.t1
chr2.4	CDS	54756448	54756526	54756448	ID=cds.MS.gene073362.t1;Parent=MS.gene073362.t1
chr2.4	exon	54756628	54756749	54756628	ID=MS.gene073362.t1.exon7;Parent=MS.gene073362.t1
chr2.4	CDS	54756628	54756749	54756628	ID=cds.MS.gene073362.t1;Parent=MS.gene073362.t1
chr2.4	exon	54757636	54757705	54757636	ID=MS.gene073362.t1.exon8;Parent=MS.gene073362.t1
chr2.4	CDS	54757636	54757705	54757636	ID=cds.MS.gene073362.t1;Parent=MS.gene073362.t1
chr2.4	exon	54758364	54758521	54758364	ID=MS.gene073362.t1.exon9;Parent=MS.gene073362.t1
chr2.4	CDS	54758364	54758521	54758364	ID=cds.MS.gene073362.t1;Parent=MS.gene073362.t1
chr2.4	exon	54758604	54758852	54758604	ID=MS.gene073362.t1.exon10;Parent=MS.gene073362.t1
chr2.4	CDS	54758604	54758852	54758604	ID=cds.MS.gene073362.t1;Parent=MS.gene073362.t1

Gene Sequence

>MS.gene073362

ATGGCACCTGGTAAGACATTGATGTGGGAAATCCCAACTTCAAAACGAAATGTAGATTACTTCTTGAAATCATACGCATCATGGGGCGAGGATGTTACAGATGTTTTGAGTTCCAGAGCACATAATATAGTGCAGACTATATTTCCTGATAATTGGCCGAATAGAAAGATCCGAAGATTTGATACACTTACTTTATACTATACAGTATTGGAACGTGTGTGCCGAGCCAAGAAGAAGGAGCCCGAAACACTACATGAAATACTAACTTCTGATATCTTCCATAGATGTTTGCTTGCATGTGCTGCTGCCGATCAAGTACTCCAAATAACTCGCACCAGCAGCACTGTGACAAAGATGTTCCCTGCTGATGATGTATTGGAGAGCTCTGGAATTACAGCTTTTGATCTTAGTCATACCATCACCACAAGTTTCATTACACATGAAGACTCTTTCCCAGGATACTTCAGTCGACTTCTCAATTCATTCAAAGAACAACTTTTGGAGAGCATGGCATGGAAAAAGGGTTCCTCATTGTATAACTCTTTGTCACTTGCTAGACCGTCCCTTTCAGAGGAAATCAACCGTCTTGGACTGTTTGCTCAACCAATGCCATCATTCAATGAAACTATTCTCGACCTGGAGGCAGCAGAAACTATGATTGACCTATTTTTCCGTGAGGTAATAATACTGTTTGTTATACCAACCCCCTTGTAGAACAGGAATTGCAAGCTGTATATGAATGAAATAGCTGTTGATAATACTTCTTTTCATAACTGATATTTACTCTCCAAATTCCATTTACATCCTTTTTTTTATTGTGGCAAGACATCAATCTGTTAGTCTGAAGCTCCATCTTAATCATGTTCAACAACTATTGGATGTGTTTGGATTTTATGTTAAGAATTCAAGTTTCCTTTCAAATTGGATTCTTATATCACTTCCATTTTGCTTGTTTCCTTCTGAAACTTATGGGACATTTTTTTTGGTTCGCCTGTTTCTTTTTGATTTCGTTCTTTTGCTGCTTCCCTAAGTCACTTTAAGCATTCCATATTGTTTGCACTTCTTGTGTTTCTCAGATCAGTATGTTGGGAGCGGTCAGAATACGCGGCATGGCTGAAAGGCTACAATTATCCCAAAGGACAAGGGAGGACGTATACAGTCTTTTTCAGCGAATCCTAAACCAGCGGACACACCTCTTCTTCAATCGTCATATTGACCAAATCATGTTGTGTTGCTTCTATGTAGTCGCGCAGGTTTCTCTTTTAACTTTGAAAACATGAGAGTGCATTGTGCTTCATTTACCATTTTCTCATTCTATTCTTTTTTATTTGCAGTTTTCAAAACTGAACCTGAGTTTCTGGGAGATTGTACACAGCTACAAACAGCAACCAGAGTGCAGGTCACCCGTTTTTCGCAGTGTATTTGTTGATTGCCCATTGGCGGGCGCGGGCCATAATGATGATAAGCCACAGAAGCGTGTTGGAATTATTACATTTTACAATGACATATTCGCTCCATCTGTATGGCCACTGGTGATGGAACTTATCACTGATGAAGAAACTGTGAAAAGTGACCAATTAGCTGAAGTTGTTGATTCAAAGGATGGTACTTACCTCTTTGTTTGCCTGGCTAAGTTTGCTTTCAATTGTTTGCCCGACTTCCATTGCTATGCCAGTTCTGCAACCCTTTGACTTGTGTGATTTTCTATTCACAGGCCATCTAGCTCAATGTCTTGTGTCTCCAAAAATAGTACCTTTCCCAAGATTTCCTGTTATGCATTGGGAAAAACGATACCCCACAAAAAACTTACGCGTCTCTCCATTTTCATCATCTGAGGTACTAAGTTTCATGTCTGGCTTTCTTTTGACTATTTCTCTTTTCCTACTATGTTTCATGTTTGGCTTTTTTTTTGTTACCATGTTTGGCTTTCTTGTGCTGTAATATTTTCACGGTCCATATTTTTAAATTTAATTATTTTTTTGCTTCACTAAGTCATTTTGAGCATTACATTTTTTTTTTTGTTGCACTTCCGGTGTTTCCTAGATCATTATGTTGGGAGCAGTCAGAATAAATGGCATGGTTGAAAAGCTACAACTATCTCAGCAGACAGGAGAGAATGTATACCATCTCTTCCAGGGAATCCTAACTCTACGACCCCATATCTTCTCCGATTTTCATATTGACCAAATCATTTTGTGTTGCTTCCGTGCAGTTGCAAAGGTTCTTGTAAATCTGAGAGTTGTTTCTCTTTAAGTTTTAGTAATCTGAGAGTGTAATGTGATTCCATTGCTGTTTTCTCTTTTTTTTTTTTTTTTTTGCAGGACCTAACTTTTCCAGGGATTATAGCCAGCTATAAACTGCAACCACAGTACACACCACCAGTTTTTCATAGTGAATTTGCTGATTGGCCATTGGCATGCCTAGACCCGTCATATGGGAAAACAAAGGGACTGGCACATATCACTAACATTGTAAAATATTACAATGATATATTCTTTCCCTATGTAAAGCCGCTGCTGTCGGAACTTTACACTGTTGTGACACCTGCGAGGAGTTACAAAATAGCTGAATTCATTAACAAAGCCGATGGTACTTGTTTATCTGCCTAGCTAAGTTACTTTCAATTGTTTTCCTGACTTCCATTGCTATGCAAGTCCTGCAATCCATTGACTTGTATGCTCCATTTACAGGCCATCTAGCTCAATGTCCTGAGCCTCCTGAAATATTAACTTTCCCAAGCCTTCCTGTTATGTCTGTGGAAGAAAAGTCTGCCGCACACTATGCATGTGTCTCTCCAATAGGATCATCTGAGGTACTAAGTTTCAAGTATGGCTTTCCATGGACTTTTATATTTTTCCCATATTCTATTTCTTGTTGGTCAAAACATTCAACTGGCATTTTCTTGGGAAAAGAAGCACATGACGCTGTGACTCGTGCAGTTATAGATAAGTTTATGTCAAATGTTGACATTTACAAGGTCAATGTTTTCAATTTTGTACAAAGACTTTAAATTTTGTACTCCCTCCGTTTCAAAATGAATGTTGTTGAAGGTTTTTACACATATATGAAGAAATGCAATGATTAGAAGAATGAGAATTGTTATTTTACTCACCAAATTATCCTTTTTAACTATTGGTTTGTTTTCTGCTAAAGTAAAAAAAATGCTCTGGGAGTAATGTACATAGGATTATTAATTGGAGGGTTCAGTTGGAAAAAAGAAGAAGTTAACATTGCATTGGAAGCTGAAAATGACCTTCATTTTTAAACAATTTTTTATTTATTTTTTGCTAAAATGACACTCATTTTGAAATGGAGGCAACGATTTTTAAACTTTTGATTTCTAGTAGACAAATTTGTATCTGCAATAAAATTGTTGACTTAGAGAACCAAACCAACTATTTGTTTCGTTGATCGAGAAATTTCTGCAACGCGTCATTGATGTAACCACCATTTCTCTTGCTTGAGAATCTCTCACTGTTATATGATGCTGGCTGGAACTGTAACATTTCTTTTGGGCACTGATTCTGCAACTCCTCTGGGAACTTGATTTGAATTGTGTGATAATTTAAGCCCTATTCCCACTTAATGAACATCAGCCCACAACAAAAATTGATTTTGGTTGGGCCACTACATTTTCTTTACCCAGTAGAAATGAAGGCTTTGAAAGTCTTATCCGTGTTTTAATCGGTCGAATGCAGAGTCCAAAGGGAATAGGACAGAAACTAGCTGGTACTAGAGAAGAAGTGAAGGAATTCACTATTGAACCGAGTAAATGATACACTCAAGTTGTTCGAGAACCTGAACTCTTCGAGCCCAAATCTGATTCACTAACCGATTCCCTCCCTTTAGTCAAACCGCTACAATTACCTACTAGCAGACCTATAACAGAGCCCACTGAGGCACATATGAAACAATGGACTAAGCACAGTCAACTAATGTTTCCATTTATGTTAAGGGGAATTGCGTTTTTATTGCTTCTTACCACTAAACAGTGGTTTCTTTTTGCTTTGCTGCAAGATTGAAAAATCGTGAAAGTGCAGTTATATAGTAATGTTGTTTGAAACCATTAAACAGAACCCGTTAACAGACTGAATGCAGTGCTTTAAGATGGCCGATGACATTAGCGAAGGCTAATCATGTTCAATGTGGCAAGACATCTATCTGTGAATTTGAAGCTGTTCAACATGATTTCAGGAACTATTGAATTTGTTTGTCTTTAAAACTAAGAATTTAAGTTTCCTATTGAATTGAATTGGATTGTTACATCACTTCCATTTGACTTATTTTGTTGTGATACTTGTGGGGCTGCTTTTCTGGTTCATGTGTTTCTTTTAGTTTTGATCATTTTGTTGCTTCCCTAAGTCATTCTAAGCATTGCATTTTGTTTGCATTTCTTGTGTCTCCTAGATCATTATGTTGGGTGCAGTCAGAATCAAGAGCATGGTTGAAATGCTAGGGTTATCTCAGGAAATAAGGGAGAATGTATACGGTCTGTTCCAGAGAATCCTACATCATCAGACATCTCTCTTCTTCAACCGTCATATTGACCACATCATTGTGTGTTGCTTCTATGCAGTCGCAAAGGTTTTTTGTTTAAATTGAGAAACTTGGGAGTATAAATTAATGTGCTTCAATACCCTTTTTCTCATTCTATTCTTTCTTGCAGATTTCAAAACCGAGTCTGAGTTTTAAGGAGATTATAGGCAGCTATAAGAAGCAACCACGGTGCAACCCACGTGTTTTTGATAGCGTATTTGTCGATTGGTCATTGGCATGCCAGGACCTAGAATCTGGTAAAATAATAGGACATGAGCATGTCGACATTGTTACATTCTGCAATGATATATTTGTTCCCTCTGTAGAGCCACTGCTTTTGGAACTTGGCGCTGAAGGGGAAGCTGTGAAAAGTTGCTGA

Protein sequence

>MS.gene073362.t1

MAPGKTLMWEIPTSKRNVDYFLKSYASWGEDVTDVLSSRAHNIVQTIFPDNWPNRKIRRFDTLTLYYTVLERVCRAKKKEPETLHEILTSDIFHRCLLACAAADQVLQITRTSSTVTKMFPADDVLESSGITAFDLSHTITTSFITHEDSFPGYFSRLLNSFKEQLLESMAWKKGSSLYNSLSLARPSLSEEINRLGLFAQPMPSFNETILDLEAAETMIDLFFREISMLGAVRIRGMAERLQLSQRTREDVYSLFQRILNQRTHLFFNRHIDQIMLCCFYVVAQFSKLNLSFWEIVHSYKQQPECRSPVFRSVFVDCPLAGAGHNDDKPQKRVGIITFYNDIFAPSVWPLVMELITDEETVKSDQLAEVVDSKDGHLAQCLVSPKIVPFPRFPVMHWEKRYPTKNLRVSPFSSSEIIMLGAVRINGMVEKLQLSQQTGENVYHLFQGILTLRPHIFSDFHIDQIILCCFRAVAKPLLSELYTVVTPARSYKIAEFINKADGHLAQCPEPPEILTFPSLPVMSVEEKSAAHYACVSPIGSSESPKGIGQKLAGTREEVKEFTIEPIRIKSMVEMLGLSQEIRENVYGLFQRILHHQTSLFFNRHIDHIIVCCFYAVAKISKPSLSFKEIIGSYKKQPRCNPRVFDSVFVDWSLACQDLESGKIIGHEHVDIVTFCNDIFVPSVEPLLLELGAEGEAVKSC